6QIK Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_6QIK_001 | 1/A/38:45 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.2 | |
HL_6QIK_002 | 1/A/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
HL_6QIK_003 | 1/A/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
HL_6QIK_004 | 1/A/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_98426.1 | |
HL_6QIK_005 | 1/A/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
HL_6QIK_006 | 1/A/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
HL_6QIK_007 | 1/A/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.9 | |
HL_6QIK_008 | 1/A/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
HL_6QIK_010 | 1/A/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.2 | |
HL_6QIK_011 | 1/A/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.2 | |
HL_6QIK_012 | 1/A/540:551 | No text annotation Not in a motif group | ||
HL_6QIK_013 | 1/A/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.2 | |
HL_6QIK_014 | 1/A/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
HL_6QIK_015 | 1/A/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
HL_6QIK_017 | 1/A/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.2 | |
HL_6QIK_022 | 1/A/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
HL_6QIK_026 | 1/A/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
HL_6QIK_029 | 1/A/1347:1357 | No text annotation Not in a motif group | geometric HL_4OOG_001 HL_28980.1 | |
HL_6QIK_030 | 1/A/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.2 | |
HL_6QIK_065 | 1/A/3025:3030 | GNRA Not in a motif group | geometric HL_6CB3_004 HL_42097.2 | |
HL_6QIK_066 | 1/A/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_46680.1 | |
HL_6QIK_067 | 1/A/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
HL_6QIK_068 | 1/A/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
HL_6QIK_070 | 1/A/3303:3311 | No text annotation Not in a motif group | geometric HL_5TBW_070 HL_27930.1 | |
HL_6QIK_072 | 1/x/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
HL_6QIK_073 | 1/x/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.2 | |
HL_6QIK_074 | 1/y/69:89 | No text annotation Not in a motif group | ||
HL_6QIK_075 | 1/y/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
HL_6QIK_076 | 1/y/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_6QIK_009 | No text annotation | ||
HL_6QIK_016 | No text annotation | ||
HL_6QIK_018 | No text annotation | ||
HL_6QIK_019 | GNRA | ||
HL_6QIK_020 | No text annotation | ||
HL_6QIK_021 | No text annotation | ||
HL_6QIK_023 | No text annotation | ||
HL_6QIK_024 | No text annotation | ||
HL_6QIK_025 | No text annotation | ||
HL_6QIK_027 | No text annotation | ||
HL_6QIK_028 | No text annotation | ||
HL_6QIK_031 | T-loop with 2 stacked bulged bases | ||
HL_6QIK_032 | No text annotation | ||
HL_6QIK_033 | No text annotation | ||
HL_6QIK_034 | No text annotation | ||
HL_6QIK_035 | No text annotation | ||
HL_6QIK_036 | No text annotation | ||
HL_6QIK_037 | No text annotation | ||
HL_6QIK_038 | No text annotation | ||
HL_6QIK_039 | No text annotation | ||
HL_6QIK_040 | No text annotation | ||
HL_6QIK_041 | No text annotation | ||
HL_6QIK_042 | GNRA with one bulged base | ||
HL_6QIK_043 | UNCG | ||
HL_6QIK_044 | No text annotation | ||
HL_6QIK_045 | No text annotation | ||
HL_6QIK_046 | No text annotation | ||
HL_6QIK_047 | No text annotation | ||
HL_6QIK_048 | No text annotation | ||
HL_6QIK_049 | No text annotation | ||
HL_6QIK_050 | No text annotation | ||
HL_6QIK_051 | No text annotation | ||
HL_6QIK_052 | No text annotation | ||
HL_6QIK_053 | No text annotation | ||
HL_6QIK_054 | No text annotation | ||
HL_6QIK_055 | No text annotation | ||
HL_6QIK_056 | No text annotation | ||
HL_6QIK_057 | No text annotation | ||
HL_6QIK_058 | No text annotation | ||
HL_6QIK_059 | No text annotation | ||
HL_6QIK_060 | No text annotation | ||
HL_6QIK_061 | Other HL | ||
HL_6QIK_062 | No text annotation | ||
HL_6QIK_063 | No text annotation | ||
HL_6QIK_064 | GNRA | ||
HL_6QIK_069 | No text annotation | ||
HL_6QIK_071 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_6QIK_001 | 1/A/7:8, 1/y/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
IL_6QIK_002 | 1/A/12:15, 1/y/144:146 | No text annotation Not in a motif group | geometric IL_5TBW_079 IL_95997.1 | |
IL_6QIK_003 | 1/A/27:28, 1/A/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
IL_6QIK_004 | 1/A/31:38, 1/A/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
IL_6QIK_005 | 1/A/82:89, 1/A/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
IL_6QIK_006 | 1/A/123:124, 1/A/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
IL_6QIK_007 | 1/A/125:127, 1/A/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
IL_6QIK_009 | 1/A/169:173, 1/A/245:253 | No text annotation Not in a motif group | ||
IL_6QIK_010 | 1/A/177:178, 1/A/238:241 | Minor groove platform Not in a motif group | geometric IL_4KQY_004 IL_95601.3 | |
IL_6QIK_011 | 1/A/189:191, 1/A/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.14 | |
IL_6QIK_012 | 1/A/337:339, 1/y/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.3 | |
IL_6QIK_013 | 1/A/376:379, 1/A/390:403 | No text annotation Not in a motif group | homologous IL_8C3A_015 IL_60992.6 | |
IL_6QIK_014 | 1/A/404:410, 1/y/13:19 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5TBW_015 IL_66414.6 | |
IL_6QIK_015 | 1/A/429:431, 1/A/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
IL_6QIK_017 | 1/A/512:513, 1/A/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.3 | |
IL_6QIK_018 | 1/A/517:525, 1/A/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
IL_6QIK_019 | 1/A/531:538, 1/A/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
IL_6QIK_020 | 1/A/668:670, 1/A/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
IL_6QIK_021 | 1/A/680:684, 1/A/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
IL_6QIK_022 | 1/A/725:728, 1/A/741:745 | No text annotation Not in a motif group | homologous IL_8C3A_025 IL_07235.1 | |
IL_6QIK_023 | 1/A/752:753, 1/A/779:781 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.3 | |
IL_6QIK_024 | 1/A/755:756, 1/A/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.14 | |
IL_6QIK_026 | 1/A/803:805, 1/A/938:940 | No text annotation Not in a motif group | homologous IL_8C3A_029 IL_95997.1 | |
IL_6QIK_027 | 1/A/805:809, 1/A/931:938 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
IL_6QIK_033 | 1/A/954:956, 1/A/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
IL_6QIK_034 | 1/A/969:970, 1/A/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
IL_6QIK_035 | 1/A/977:981, 1/A/1102:1104 | No text annotation Not in a motif group | ||
IL_6QIK_036 | 1/A/983:985, 1/A/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.3 | |
IL_6QIK_042 | 1/A/1120:1122, 1/A/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
IL_6QIK_043 | 1/A/1167:1171, 1/A/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
IL_6QIK_044 | 1/A/1173:1180, 1/A/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.7 | |
IL_6QIK_045 | 1/A/1180:1182, 1/A/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.14 | |
IL_6QIK_048 | 1/A/1207:1209, 1/A/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.14 | |
IL_6QIK_052 | 1/A/1376:1378, 1/A/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
IL_6QIK_054 | 1/A/1388:1395, 1/A/1415:1419 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.2 | |
IL_6QIK_056 | 1/A/1444:1450, 1/A/2354:2359 | No text annotation Not in a motif group | homologous IL_8C3A_065 IL_76042.2 | |
IL_6QIK_112 | 1/A/3004:3007, 1/A/3139:3144 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.9 | |
IL_6QIK_113 | 1/A/3012:3014, 1/A/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
IL_6QIK_114 | 1/A/3018:3025, 1/A/3030:3036 | No text annotation Not in a motif group | homologous IL_8C3A_125 IL_04346.7 | |
IL_6QIK_115 | 1/A/3047:3051, 1/A/3091:3094 | No text annotation Not in a motif group | homologous IL_8C3A_126 IL_37712.2 | |
IL_6QIK_116 | 1/A/3054:3059, 1/A/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
IL_6QIK_118 | 1/A/3103:3107, 1/A/3127:3131 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.2 | |
IL_6QIK_119 | 1/A/3164:3166, 1/A/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
IL_6QIK_121 | 1/A/3177:3179, 1/A/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.3 | |
IL_6QIK_122 | 1/A/3179:3188, 1/A/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
IL_6QIK_123 | 1/A/3193:3194, 1/A/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.14 | |
IL_6QIK_124 | 1/A/3300:3303, 1/A/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_129 IL_30621.3 | |
IL_6QIK_125 | 1/A/3318:3320, 1/A/3387:3388 | No text annotation Not in a motif group | homologous IL_8C3A_136 IL_83039.14 | |
IL_6QIK_126 | 1/A/3324:3325, 1/A/3381:3383 | No text annotation Not in a motif group | ||
IL_6QIK_128 | 1/A/3332:3337, 1/A/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.5 | |
IL_6QIK_132 | 1/x/15:16, 1/x/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.3 | |
IL_6QIK_133 | 1/x/21:27, 1/x/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
IL_6QIK_134 | 1/x/28:29, 1/x/49:52 | Minor groove platform Not in a motif group | homologous IL_5TBW_374 IL_63797.2 | |
IL_6QIK_135 | 1/x/29:30, 1/x/47:49 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
IL_6QIK_136 | 1/x/32:36, 1/x/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
IL_6QIK_137 | 1/x/72:80, 1/x/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
IL_6QIK_138 | 1/x/84:87, 1/x/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
IL_6QIK_139 | 1/y/44:64, 1/y/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
IL_6QIK_140 | 1/y/64:66, 1/y/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
IL_6QIK_141 | 1/y/68:69, 1/y/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.14 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_6QIK_008 | Single stack bend | ||
IL_6QIK_016 | No text annotation | ||
IL_6QIK_025 | No text annotation | ||
IL_6QIK_028 | No text annotation | ||
IL_6QIK_029 | Triple sheared | ||
IL_6QIK_030 | No text annotation | ||
IL_6QIK_031 | No text annotation | ||
IL_6QIK_032 | No text annotation | ||
IL_6QIK_037 | No text annotation | ||
IL_6QIK_038 | No text annotation | ||
IL_6QIK_039 | No text annotation | ||
IL_6QIK_040 | No text annotation | ||
IL_6QIK_041 | No text annotation | ||
IL_6QIK_046 | No text annotation | ||
IL_6QIK_047 | No text annotation | ||
IL_6QIK_049 | No text annotation | ||
IL_6QIK_050 | No text annotation | ||
IL_6QIK_051 | No text annotation | ||
IL_6QIK_053 | No text annotation | ||
IL_6QIK_055 | Single bulged A | ||
IL_6QIK_057 | No text annotation | ||
IL_6QIK_058 | No text annotation | ||
IL_6QIK_059 | No text annotation | ||
IL_6QIK_060 | Other IL | ||
IL_6QIK_061 | Multiple bulged bases | ||
IL_6QIK_062 | No text annotation | ||
IL_6QIK_063 | No text annotation | ||
IL_6QIK_064 | No text annotation | ||
IL_6QIK_065 | Single bulged C | ||
IL_6QIK_066 | No text annotation | ||
IL_6QIK_067 | No text annotation | ||
IL_6QIK_068 | No text annotation | ||
IL_6QIK_069 | Kink-turn | ||
IL_6QIK_070 | No text annotation | ||
IL_6QIK_071 | No text annotation | ||
IL_6QIK_072 | Major groove platform; stack outside cWW | ||
IL_6QIK_073 | No text annotation | ||
IL_6QIK_074 | No text annotation | ||
IL_6QIK_075 | No text annotation | ||
IL_6QIK_076 | No text annotation | ||
IL_6QIK_077 | No text annotation | ||
IL_6QIK_078 | Kink-turn related | ||
IL_6QIK_079 | No text annotation | ||
IL_6QIK_080 | No text annotation | ||
IL_6QIK_081 | Single bulged U | ||
IL_6QIK_082 | Other IL | ||
IL_6QIK_083 | No text annotation | ||
IL_6QIK_084 | No text annotation | ||
IL_6QIK_085 | No text annotation | ||
IL_6QIK_086 | No text annotation | ||
IL_6QIK_087 | Minor groove platform with intercalation | ||
IL_6QIK_088 | No text annotation | ||
IL_6QIK_089 | Minor groove platform | ||
IL_6QIK_090 | No text annotation | ||
IL_6QIK_091 | UU cWW water inserted | ||
IL_6QIK_092 | No text annotation | ||
IL_6QIK_093 | No text annotation | ||
IL_6QIK_094 | No text annotation | ||
IL_6QIK_095 | No text annotation | ||
IL_6QIK_096 | Single bulged A | ||
IL_6QIK_097 | Isolated tHS basepair with bulges | ||
IL_6QIK_098 | Single bulged A | ||
IL_6QIK_099 | Tandem non-canonical cWW pairs | ||
IL_6QIK_100 | No text annotation | ||
IL_6QIK_101 | No text annotation | ||
IL_6QIK_102 | Major groove platform | ||
IL_6QIK_103 | No text annotation | ||
IL_6QIK_104 | Triple sheared | ||
IL_6QIK_105 | No text annotation | ||
IL_6QIK_106 | Isolated non-canonical cWW with bulges | ||
IL_6QIK_107 | No text annotation | ||
IL_6QIK_108 | No text annotation | ||
IL_6QIK_109 | No text annotation | ||
IL_6QIK_110 | No text annotation | ||
IL_6QIK_111 | No text annotation | ||
IL_6QIK_117 | No text annotation | ||
IL_6QIK_120 | No text annotation | ||
IL_6QIK_127 | No text annotation | ||
IL_6QIK_129 | Single bulged U | ||
IL_6QIK_130 | Double sheared | ||
IL_6QIK_131 | Multiple bulged bases |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_6QIK_002 | 1/A/369:376, 1/A/403:404, 1/y/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
J3_6QIK_003 | 1/A/502:503, 1/A/588:597, 1/A/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
J3_6QIK_006 | 1/A/986:987, 1/A/1062:1066, 1/A/1092:1098 | No text annotation Not in a motif group | ||
J3_6QIK_015 | 1/A/3298:3300, 1/A/3314:3318, 1/A/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
J3_6QIK_016 | 1/x/9:14, 1/x/66:67, 1/x/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_6QIK_001 | No text annotation | ||
J3_6QIK_004 | No text annotation | ||
J3_6QIK_005 | No text annotation | ||
J3_6QIK_007 | No text annotation | ||
J3_6QIK_008 | No text annotation | ||
J3_6QIK_009 | No text annotation | ||
J3_6QIK_010 | No text annotation | ||
J3_6QIK_011 | No text annotation | ||
J3_6QIK_012 | No text annotation | ||
J3_6QIK_013 | No text annotation | ||
J3_6QIK_014 | No text annotation |
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