1NJM Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1NJM_001 | 1/0/57:68 | No text annotation Not in a motif group | ||
| HL_1NJM_002 | 1/0/85:95 | No text annotation Not in a motif group | homologous HL_7A0S_002 HL_05727.1 | |
| HL_1NJM_003 | 1/0/121:126 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_1NJM_004 | 1/0/133:138 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_1NJM_005 | 1/0/146:151 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_1NJM_006 | 1/0/172:177 | No text annotation Not in a motif group | ||
| HL_1NJM_007 | 1/0/202:207 | No text annotation Not in a motif group | homologous HL_4WF9_007 HL_02862.2 | |
| HL_1NJM_008 | 1/0/223:229 | No text annotation Not in a motif group | homologous HL_4WF9_008 HL_67216.7 | |
| HL_1NJM_009 | 1/0/316:323 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_1NJM_010 | 1/0/330:334 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_1NJM_011 | 1/0/338:346 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_1NJM_014 | 1/0/473:478 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_1NJM_015 | 1/0/498:503 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_1NJM_016 | 1/0/552:560 | No text annotation Not in a motif group | ||
| HL_1NJM_017 | 1/0/575:584 | No text annotation Not in a motif group | homologous HL_7A0S_018 HL_89380.2 | |
| HL_1NJM_018 | 1/0/621:628 | No text annotation Not in a motif group | ||
| HL_1NJM_019 | 1/0/640:645 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_1NJM_020 | 1/0/652:658 | No text annotation Not in a motif group | ||
| HL_1NJM_021 | 1/0/725:732 | No text annotation Not in a motif group | ||
| HL_1NJM_022 | 1/0/757:766 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_1NJM_023 | 1/0/791:799 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_24068.2 | |
| HL_1NJM_024 | 1/0/839:844 | No text annotation Not in a motif group | geometric HL_5J7L_157 HL_64365.1 | |
| HL_1NJM_026 | 1/0/966:973 | No text annotation Not in a motif group | homologous HL_7A0S_026 HL_42097.1 | |
| HL_1NJM_027 | 1/0/989:996 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_64430.2 | |
| HL_1NJM_028 | 1/0/1074:1086 | No text annotation Not in a motif group | homologous HL_7RQB_029 NA | |
| HL_1NJM_029 | 1/0/1103:1110 | No text annotation Not in a motif group | homologous HL_7A0S_029 HL_56691.2 | |
| HL_1NJM_030 | 1/0/1184:1190 | No text annotation Not in a motif group | ||
| HL_1NJM_031 | 1/0/1235:1240 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
| HL_1NJM_032 | 1/0/1294:1302 | No text annotation Not in a motif group | ||
| HL_1NJM_033 | 1/0/1337:1343 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_1NJM_034 | 1/0/1376:1381 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_1NJM_035 | 1/0/1401:1412 | No text annotation Not in a motif group | ||
| HL_1NJM_036 | 1/0/1466:1476 | No text annotation Not in a motif group | ||
| HL_1NJM_037 | 1/0/1508:1514 | No text annotation Not in a motif group | geometric HL_7RQB_038 HL_46680.1 | |
| HL_1NJM_039 | 1/0/1628:1635 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_1NJM_040 | 1/0/1646:1653 | No text annotation Not in a motif group | homologous HL_7A0S_041 HL_26881.1 | |
| HL_1NJM_041 | 1/0/1708:1713 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_1NJM_042 | 1/0/1731:1735 | No text annotation Not in a motif group | homologous HL_7A0S_043 NA | |
| HL_1NJM_043 | 1/0/1743:1747 | No text annotation Not in a motif group | homologous HL_7A0S_044 HL_76539.2 | |
| HL_1NJM_044 | 1/0/1767:1779 | No text annotation Not in a motif group | homologous HL_7A0S_045 HL_43667.1 | |
| HL_1NJM_045 | 1/0/1797:1803 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_1NJM_046 | 1/0/1856:1861 | No text annotation Not in a motif group | homologous HL_7A0S_047 HL_42097.1 | |
| HL_1NJM_047 | 1/0/1893:1903 | No text annotation Not in a motif group | ||
| HL_1NJM_048 | 1/0/1932:1940 | No text annotation Not in a motif group | homologous HL_7A0S_048 HL_51824.1 | |
| HL_1NJM_049 | 1/0/2009:2020 | No text annotation Not in a motif group | ||
| HL_1NJM_050 | 1/0/2189:2196 | No text annotation Not in a motif group | ||
| HL_1NJM_051 | 1/0/2227:2235 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_1NJM_052 | 1/0/2243:2255 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_1NJM_053 | 1/0/2282:2292 | No text annotation Not in a motif group | ||
| HL_1NJM_054 | 1/0/2303:2310 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_1NJM_055 | 1/0/2334:2341 | No text annotation Not in a motif group | homologous HL_7A0S_056 HL_84085.2 | |
| HL_1NJM_056 | 1/0/2353:2358 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_1NJM_057 | 1/0/2383:2392 | No text annotation Not in a motif group | homologous HL_4WF9_055 HL_30784.2 | |
| HL_1NJM_058 | 1/0/2450:2458 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_1NJM_059 | 1/0/2506:2515 | tRNA anticodon loop Not in a motif group | geometric HL_3W3S_002 HL_53597.2 | |
| HL_1NJM_060 | 1/0/2530:2536 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_1NJM_061 | 1/0/2573:2578 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_1NJM_062 | 1/0/2637:2642 | GNRA Not in a motif group | geometric HL_5X2G_001 HL_42097.1 | |
| HL_1NJM_063 | 1/0/2680:2685 | Ribsomal LSU H95 Not in a motif group | homologous HL_7A0S_064 HL_46680.1 | |
| HL_1NJM_064 | 1/0/2725:2739 | No text annotation Not in a motif group | homologous HL_7A0S_065 HL_56677.7 | |
| HL_1NJM_066 | 1/0/2794:2802 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_1NJM_067 | 1/0/2831:2836 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1NJM_012 | No text annotation | ||
| HL_1NJM_013 | No text annotation | ||
| HL_1NJM_025 | No text annotation | ||
| HL_1NJM_038 | No text annotation | ||
| HL_1NJM_065 | No text annotation | ||
| HL_1NJM_068 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1NJM_001 | 1/0/24:30, 1/0/520:526 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_1NJM_002 | 1/0/35:37, 1/0/454:457 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_1NJM_003 | 1/0/37:39, 1/0/452:454 | No text annotation Not in a motif group | geometric IL_3LA5_001 IL_95997.1 | |
| IL_1NJM_004 | 1/0/42:43, 1/0/447:449 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_1NJM_005 | 1/0/80:84, 1/0/96:103 | Kink-turn Not in a motif group | homologous IL_7A0S_004 IL_45067.2 | |
| IL_1NJM_006 | 1/0/160:161, 1/0/189:191 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_76488.2 | |
| IL_1NJM_007 | 1/0/165:171, 1/0/178:185 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_006 IL_04346.7 | |
| IL_1NJM_009 | 1/0/215:222, 1/0/230:236 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_007 IL_04346.7 | |
| IL_1NJM_010 | 1/0/299:301, 1/0/361:363 | No text annotation Not in a motif group | ||
| IL_1NJM_011 | 1/0/303:306, 1/0/354:359 | No text annotation Not in a motif group | homologous IL_7A0S_008 IL_07235.1 | |
| IL_1NJM_012 | 1/0/391:393, 1/0/407:409 | No text annotation Not in a motif group | geometric IL_5TBW_127 IL_95997.1 | |
| IL_1NJM_013 | 1/0/543:545, 1/0/567:569 | No text annotation Not in a motif group | geometric IL_6CZR_171 IL_95997.1 | |
| IL_1NJM_014 | 1/0/573:575, 1/0/584:586 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_1NJM_015 | 1/0/600:602, 1/0/678:679 | Single bulged A Not in a motif group | homologous IL_7A0S_012 IL_37497.2 | |
| IL_1NJM_016 | 1/0/615:620, 1/0/629:634 | No text annotation Not in a motif group | ||
| IL_1NJM_017 | 1/0/685:687, 1/0/819:821 | No text annotation Not in a motif group | geometric IL_4LFB_010 IL_95997.1 | |
| IL_1NJM_018 | 1/0/687:691, 1/0/812:819 | No text annotation Not in a motif group | homologous IL_7A0S_015 IL_17470.6 | |
| IL_1NJM_019 | 1/0/703:705, 1/0/783:785 | No text annotation Not in a motif group | geometric IL_5TBW_079 IL_95997.1 | |
| IL_1NJM_020 | 1/0/706:708, 1/0/780:782 | No text annotation Not in a motif group | geometric IL_5Y7M_007 IL_95997.1 | |
| IL_1NJM_021 | 1/0/715:716, 1/0/741:743 | Single bulged G Not in a motif group | geometric IL_4WF9_023 IL_00225.2 | |
| IL_1NJM_022 | 1/0/716:721, 1/0/736:741 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7A0S_018 IL_86929.2 | |
| IL_1NJM_023 | 1/0/750:754, 1/0/769:772 | No text annotation Not in a motif group | geometric IL_1MFQ_001 IL_58502.1 | |
| IL_1NJM_024 | 1/0/754:756, 1/0/767:769 | No text annotation Not in a motif group | homologous IL_7A0S_020 IL_95997.1 | |
| IL_1NJM_025 | 1/0/836:839, 1/0/844:847 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5LQO_002 IL_30621.2 | |
| IL_1NJM_026 | 1/0/850:851, 1/0/951:953 | Single stack bend Not in a motif group | homologous IL_7A0S_022 IL_92001.1 | |
| IL_1NJM_027 | 1/0/857:860, 1/0/944:945 | Multiple bulged bases Not in a motif group | geometric IL_4V9F_021 IL_76389.1 | |
| IL_1NJM_028 | 1/0/860:862, 1/0/941:944 | No text annotation Not in a motif group | ||
| IL_1NJM_029 | 1/0/863:864, 1/0/938:940 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_1NJM_030 | 1/0/864:866, 1/0/936:938 | No text annotation Not in a motif group | geometric IL_5Y85_006 IL_95997.1 | |
| IL_1NJM_031 | 1/0/870:875, 1/0/927:932 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7A0S_027 IL_81631.1 | |
| IL_1NJM_032 | 1/0/875:877, 1/0/924:927 | No text annotation Not in a motif group | ||
| IL_1NJM_033 | 1/0/877:881, 1/0/921:924 | C-loop Not in a motif group | geometric IL_7A0S_029 IL_02509.1 | |
| IL_1NJM_034 | 1/0/883:885, 1/0/917:919 | Isolated near basepair Not in a motif group | homologous IL_7A0S_030 IL_52767.2 | |
| IL_1NJM_035 | 1/0/963:965, 1/0/974:976 | No text annotation Not in a motif group | homologous IL_7A0S_031 IL_95997.1 | |
| IL_1NJM_036 | 1/0/1005:1007, 1/0/1170:1171 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_1NJM_037 | 1/0/1009:1013, 1/0/1164:1168 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
| IL_1NJM_038 | 1/0/1015:1022, 1/0/1161:1162 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_1NJM_039 | 1/0/1022:1024, 1/0/1160:1161 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_1NJM_040 | 1/0/1029:1035, 1/0/1150:1155 | No text annotation Not in a motif group | ||
| IL_1NJM_041 | 1/0/1042:1045, 1/0/1132:1134 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_1NJM_042 | 1/0/1045:1047, 1/0/1130:1132 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_1NJM_043 | 1/0/1052:1054, 1/0/1123:1125 | No text annotation Not in a motif group | ||
| IL_1NJM_044 | 1/0/1054:1062, 1/0/1120:1123 | No text annotation Not in a motif group | ||
| IL_1NJM_045 | 1/0/1062:1063, 1/0/1118:1120 | Single stack bend Not in a motif group | geometric IL_5J7L_044 IL_76488.2 | |
| IL_1NJM_046 | 1/0/1070:1073, 1/0/1087:1090 | No text annotation Not in a motif group | ||
| IL_1NJM_047 | 1/0/1210:1212, 1/0/1260:1263 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_1NJM_050 | 1/0/1218:1220, 1/0/1252:1254 | No text annotation Not in a motif group | homologous IL_7A0S_042 IL_51629.2 | |
| IL_1NJM_051 | 1/0/1221:1228, 1/0/1247:1251 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_1NJM_052 | 1/0/1231:1234, 1/0/1241:1244 | No text annotation Not in a motif group | ||
| IL_1NJM_054 | 1/0/1332:1336, 1/0/1344:1346 | C-loop Not in a motif group | homologous IL_7A0S_047 IL_37712.2 | |
| IL_1NJM_055 | 1/0/1364:1368, 1/0/1389:1393 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_1NJM_056 | 1/0/1370:1374, 1/0/1383:1387 | tSH-tHW-tHS Not in a motif group | homologous IL_7A0S_049 IL_17136.1 | |
| IL_1NJM_057 | 1/0/1418:1420, 1/0/1611:1613 | No text annotation Not in a motif group | homologous IL_4WF9_053 NA | |
| IL_1NJM_058 | 1/0/1426:1430, 1/0/1598:1605 | Kink-turn Not in a motif group | homologous IL_7A0S_050 IL_93699.1 | |
| IL_1NJM_059 | 1/0/1431:1437, 1/0/1591:1597 | No text annotation Not in a motif group | ||
| IL_1NJM_060 | 1/0/1447:1449, 1/0/1573:1576 | No text annotation Not in a motif group | homologous IL_7A0S_052 IL_55351.2 | |
| IL_1NJM_061 | 1/0/1451:1454, 1/0/1567:1571 | tSH-tHW Not in a motif group | homologous IL_7A0S_053 IL_04059.1 | |
| IL_1NJM_062 | 1/0/1463:1466, 1/0/1476:1478 | No text annotation Not in a motif group | ||
| IL_1NJM_063 | 1/0/1488:1490, 1/0/1534:1535 | No text annotation Not in a motif group | ||
| IL_1NJM_064 | 1/0/1491:1492, 1/0/1530:1533 | No text annotation Not in a motif group | ||
| IL_1NJM_065 | 1/0/1492:1495, 1/0/1528:1530 | No text annotation Not in a motif group | geometric IL_4V9F_053 IL_46796.1 | |
| IL_1NJM_066 | 1/0/1495:1499, 1/0/1521:1528 | No text annotation Not in a motif group | ||
| IL_1NJM_067 | 1/0/1499:1501, 1/0/1519:1521 | No text annotation Not in a motif group | geometric IL_7A0S_031 IL_95997.1 | |
| IL_1NJM_068 | 1/0/1503:1508, 1/0/1514:1517 | No text annotation Not in a motif group | ||
| IL_1NJM_069 | 1/0/1668:1673, 1/0/1987:1989 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_1NJM_070 | 1/0/1679:1682, 1/0/1978:1981 | No text annotation Not in a motif group | ||
| IL_1NJM_071 | 1/0/1683:1686, 1/0/1976:1977 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_064 IL_50694.2 | |
| IL_1NJM_072 | 1/0/1686:1691, 1/0/1973:1976 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_1NJM_073 | 1/0/1703:1708, 1/0/1713:1719 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_1NJM_074 | 1/0/1760:1762, 1/0/1963:1966 | No text annotation Not in a motif group | geometric IL_1XJR_003 IL_10023.1 | |
| IL_1NJM_075 | 1/0/1786:1788, 1/0/1814:1816 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_1NJM_076 | 1/0/1789:1795, 1/0/1805:1813 | Kink-turn related Not in a motif group | homologous IL_4WF9_069 IL_17069.3 | |
| IL_1NJM_077 | 1/0/1829:1832, 1/0/1885:1886 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_1NJM_078 | 1/0/1833:1835, 1/0/1880:1884 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_1NJM_079 | 1/0/1838:1841, 1/0/1876:1877 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7A0S_068 IL_88739.1 | |
| IL_1NJM_080 | 1/0/1842:1848, 1/0/1869:1875 | No text annotation Not in a motif group | ||
| IL_1NJM_081 | 1/0/1848:1852, 1/0/1865:1869 | Triple sheared Not in a motif group | homologous IL_7A0S_070 IL_56467.8 | |
| IL_1NJM_082 | 1/0/1853:1855, 1/0/1862:1864 | No text annotation Not in a motif group | geometric IL_7A0S_031 IL_95997.1 | |
| IL_1NJM_083 | 1/0/1889:1891, 1/0/1905:1907 | Isolated cWH basepair Not in a motif group | geometric IL_5F5F_001 IL_51629.2 | |
| IL_1NJM_084 | 1/0/1916:1929, 1/0/1943:1950 | No text annotation Not in a motif group | ||
| IL_1NJM_085 | 1/0/2033:2036, 1/0/2595:2597 | No text annotation Not in a motif group | geometric IL_6CZR_136 IL_05564.2 | |
| IL_1NJM_086 | 1/0/2036:2040, 1/0/2590:2595 | No text annotation Not in a motif group | ||
| IL_1NJM_087 | 1/0/2050:2052, 1/0/2421:2422 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.13 | |
| IL_1NJM_088 | 1/0/2053:2054, 1/0/2417:2420 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_1NJM_089 | 1/0/2064:2066, 1/0/2215:2218 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_082 IL_38958.7 | |
| IL_1NJM_090 | 1/0/2068:2070, 1/0/2211:2213 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_1NJM_091 | 1/0/2077:2079, 1/0/2176:2178 | No text annotation Not in a motif group | geometric IL_5UNE_003 IL_95997.1 | |
| IL_1NJM_092 | 1/0/2080:2082, 1/0/2173:2175 | No text annotation Not in a motif group | geometric IL_5UNE_004 IL_95997.1 | |
| IL_1NJM_093 | 1/0/2082:2085, 1/0/2170:2173 | No text annotation Not in a motif group | ||
| IL_1NJM_095 | 1/0/2091:2093, 1/0/2162:2164 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_1NJM_097 | 1/0/2120:2122, 1/0/2135:2137 | No text annotation Not in a motif group | ||
| IL_1NJM_098 | 1/0/2184:2186, 1/0/2199:2201 | No text annotation Not in a motif group | geometric IL_7A0S_026 IL_51629.2 | |
| IL_1NJM_099 | 1/0/2269:2271, 1/0/2319:2321 | No text annotation Not in a motif group | geometric IL_5D0B_001 IL_95997.1 | |
| IL_1NJM_100 | 1/0/2329:2332, 1/0/2343:2346 | Double sheared Not in a motif group | homologous IL_7A0S_081 IL_09705.9 | |
| IL_1NJM_102 | 1/0/2379:2382, 1/0/2393:2395 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_82068.2 | |
| IL_1NJM_103 | 1/0/2432:2434, 1/0/2475:2479 | No text annotation Not in a motif group | ||
| IL_1NJM_104 | 1/0/2435:2440, 1/0/2468:2474 | No text annotation Not in a motif group | ||
| IL_1NJM_105 | 1/0/2445:2449, 1/0/2459:2463 | Triple sheared Not in a motif group | homologous IL_4WF9_093 IL_56467.8 | |
| IL_1NJM_106 | 1/0/2486:2487, 1/0/2559:2561 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_1NJM_107 | 1/0/2489:2491, 1/0/2553:2557 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_1NJM_108 | 1/0/2491:2492, 1/0/2550:2553 | Multiple bulged bases Not in a motif group | homologous IL_7A0S_090 IL_71530.2 | |
| IL_1NJM_109 | 1/0/2492:2494, 1/0/2548:2550 | Isolated cWH basepair Not in a motif group | geometric IL_5F5F_003 IL_51629.2 | |
| IL_1NJM_110 | 1/0/2500:2502, 1/0/2519:2523 | No text annotation Not in a motif group | ||
| IL_1NJM_111 | 1/0/2570:2571, 1/0/2580:2582 | No text annotation Not in a motif group | ||
| IL_1NJM_113 | 1/0/2615:2619, 1/0/2754:2762 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_1NJM_114 | 1/0/2625:2627, 1/0/2651:2653 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_51629.2 | |
| IL_1NJM_115 | 1/0/2631:2637, 1/0/2642:2647 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7A0S_094 IL_16458.1 | |
| IL_1NJM_116 | 1/0/2659:2665, 1/0/2703:2707 | No text annotation Not in a motif group | ||
| IL_1NJM_117 | 1/0/2666:2670, 1/0/2698:2702 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_1NJM_118 | 1/0/2674:2675, 1/0/2690:2694 | Multiple bulged bases Not in a motif group | homologous IL_7A0S_097 IL_71530.2 | |
| IL_1NJM_119 | 1/0/2717:2722, 1/0/2742:2747 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_1NJM_120 | 1/0/2813:2814, 1/0/2853:2855 | Single bulged G Not in a motif group | homologous IL_7A0S_099 IL_00225.2 | |
| IL_1NJM_121 | 1/0/2818:2820, 1/0/2846:2849 | Decoding loop related Not in a motif group | homologous IL_7A0S_100 IL_02284.5 | |
| IL_1NJM_122 | 1/0/2822:2827, 1/0/2840:2844 | No text annotation Not in a motif group | homologous IL_7A0S_101 IL_83162.5 | |
| IL_1NJM_123 | 1/0/1035:1041, 1/0/1135:1150 | No text annotation Not in a motif group | geometric IL_7A0S_037 IL_50715.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1NJM_008 | No text annotation | ||
| IL_1NJM_048 | UG cWW | ||
| IL_1NJM_049 | No text annotation | ||
| IL_1NJM_053 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_1NJM_094 | No text annotation | ||
| IL_1NJM_096 | Multiple bulged bases | ||
| IL_1NJM_101 | No text annotation | ||
| IL_1NJM_112 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_1NJM_001 | 1/0/696:702, 1/0/786:790, 1/0/800:807 | No text annotation Not in a motif group | ||
| J3_1NJM_002 | 1/0/710:713, 1/0/745:749, 1/0/773:778 | No text annotation Not in a motif group | homologous J3_7A0S_005 NA | |
| J3_1NJM_003 | 1/0/1066:1068, 1/0/1092:1102, 1/0/1111:1115 | No text annotation Not in a motif group | ||
| J3_1NJM_004 | 1/0/1311:1316, 1/0/1641:1643, 1/0/1656:1659 | No text annotation Not in a motif group | homologous J3_7A0S_006 NA | |
| J3_1NJM_005 | 1/0/1319:1322, 1/0/1621:1627, 1/0/1636:1638 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_1NJM_006 | 1/0/2073:2076, 1/0/2179:2183, 1/0/2202:2208 | No text annotation Not in a motif group | ||
| J3_1NJM_007 | 1/0/2274:2278, 1/0/2296:2303, 1/0/2310:2316 | No text annotation Not in a motif group | ||
| J3_1NJM_008 | 1/0/2496:2500, 1/0/2523:2526, 1/0/2540:2546 | No text annotation Not in a motif group | ||
| J3_1NJM_009 | 1/0/55:56, 1/0/69:75, 1/0/108:112 | No text annotation Not in a motif group | homologous J3_7A0S_002 NA | |
| J3_1NJM_010 | 1/0/1357:1363, 1/0/1394:1398, 1/0/1415:1416 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_1NJM_011 | 1/0/2789:2790, 1/0/2806:2811, 1/0/2857:2861 | No text annotation Not in a motif group | homologous J3_7A0S_013 NA |
Problematic loops
No problematic loops
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