7MSH Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7MSH_001 | 1/A/86:97 | No text annotation Not in a motif group | ||
| HL_7MSH_002 | 1/A/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
| HL_7MSH_003 | 1/A/137:144 | No text annotation Not in a motif group | homologous HL_4WF9_004 HL_84085.2 | |
| HL_7MSH_004 | 1/A/160:170 | No text annotation Not in a motif group | ||
| HL_7MSH_005 | 1/A/196:203 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_06192.2 | |
| HL_7MSH_006 | 1/A/227:232 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_7MSH_007 | 1/A/248:254 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_7MSH_008 | 1/A/292:299 | No text annotation Not in a motif group | geometric HL_6R47_001 HL_12078.2 | |
| HL_7MSH_009 | 1/A/337:346 | No text annotation Not in a motif group | geometric HL_6ORD_035 HL_14843.1 | |
| HL_7MSH_010 | 1/A/388:395 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_7MSH_011 | 1/A/402:406 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_75407.1 | |
| HL_7MSH_012 | 1/A/410:418 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.9 | |
| HL_7MSH_013 | 1/A/470:482 | No text annotation Not in a motif group | ||
| HL_7MSH_014 | 1/A/499:506 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_7MSH_015 | 1/A/551:556 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.2 | |
| HL_7MSH_016 | 1/A/576:581 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.2 | |
| HL_7MSH_017 | 1/A/633:650 | No text annotation Not in a motif group | ||
| HL_7MSH_018 | 1/A/668:677 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_4WF9_018 HL_89380.2 | |
| HL_7MSH_019 | 1/A/715:720 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_7MSH_020 | 1/A/733:738 | No text annotation Not in a motif group | homologous HL_7A0S_020 HL_42097.2 | |
| HL_7MSH_021 | 1/A/745:751 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.2 | |
| HL_7MSH_022 | 1/A/763:776 | No text annotation Not in a motif group | ||
| HL_7MSH_023 | 1/A/841:848 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_7MSH_024 | 1/A/872:883 | No text annotation Not in a motif group | ||
| HL_7MSH_025 | 1/A/908:914 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.1 | |
| HL_7MSH_026 | 1/A/955:960 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_64365.1 | |
| HL_7MSH_028 | 1/A/1083:1090 | No text annotation Not in a motif group | homologous HL_7A0S_026 HL_42097.2 | |
| HL_7MSH_029 | 1/A/1107:1114 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_7MSH_030 | 1/A/1221:1228 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.2 | |
| HL_7MSH_031 | 1/A/1303:1308 | No text annotation Not in a motif group | ||
| HL_7MSH_032 | 1/A/1353:1358 | No text annotation Not in a motif group | homologous HL_4WF9_031 HL_87030.2 | |
| HL_7MSH_033 | 1/A/1412:1420 | No text annotation Not in a motif group | homologous HL_7A0S_032 HL_89380.2 | |
| HL_7MSH_034 | 1/A/1455:1461 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_7MSH_035 | 1/A/1494:1499 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_7MSH_036 | 1/A/1520:1529 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_7MSH_037 | 1/A/1600:1605 | No text annotation Not in a motif group | geometric HL_5TBW_044 HL_09829.1 | |
| HL_7MSH_038 | 1/A/1688:1699 | No text annotation Not in a motif group | ||
| HL_7MSH_039 | 1/A/1729:1735 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_7MSH_040 | 1/A/1770:1777 | No text annotation Not in a motif group | ||
| HL_7MSH_041 | 1/A/1802:1805 | No text annotation Not in a motif group | geometric HL_7A0S_039 HL_38927.2 | |
| HL_7MSH_042 | 1/A/1847:1854 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_7MSH_043 | 1/A/1865:1871 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.2 | |
| HL_7MSH_044 | 1/A/1926:1931 | UNCG Not in a motif group | geometric HL_4LFB_011 HL_03562.2 | |
| HL_7MSH_045 | 1/A/1946:1981 | No text annotation Not in a motif group | ||
| HL_7MSH_046 | 1/A/1986:1990 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_7MSH_047 | 1/A/2011:2021 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.5 | |
| HL_7MSH_048 | 1/A/2040:2045 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.2 | |
| HL_7MSH_049 | 1/A/2104:2109 | No text annotation Not in a motif group | ||
| HL_7MSH_050 | 1/A/2148:2158 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_7MSH_051 | 1/A/2187:2195 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_7MSH_052 | 1/A/2265:2274 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_7MSH_053 | 1/A/2361:2411 | No text annotation Not in a motif group | ||
| HL_7MSH_054 | 1/A/2446:2453 | No text annotation Not in a motif group | ||
| HL_7MSH_055 | 1/A/2486:2494 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_7MSH_056 | 1/A/2502:2514 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_7MSH_057 | 1/A/2541:2551 | No text annotation Not in a motif group | homologous HL_5J7L_188 HL_11805.3 | |
| HL_7MSH_058 | 1/A/2562:2569 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_7MSH_059 | 1/A/2593:2600 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_7MSH_060 | 1/A/2612:2617 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.2 | |
| HL_7MSH_061 | 1/A/2642:2651 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_7MSH_062 | 1/A/2709:2717 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_7MSH_063 | 1/A/2766:2773 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_91104.1 | |
| HL_7MSH_064 | 1/A/2789:2795 | No text annotation Not in a motif group | homologous HL_7A0S_061 HL_43656.2 | |
| HL_7MSH_065 | 1/A/2832:2837 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.2 | |
| HL_7MSH_066 | 1/A/2896:2901 | GNRA Not in a motif group | geometric HL_5J7L_004 HL_42097.2 | |
| HL_7MSH_067 | 1/A/2939:2944 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_7MSH_068 | 1/A/2983:2997 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_7MSH_069 | 1/A/3032:3038 | Other HL Not in a motif group | homologous HL_5J7L_200 HL_34168.2 | |
| HL_7MSH_070 | 1/A/3054:3062 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_7MSH_071 | 1/A/3091:3096 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.2 | |
| HL_7MSH_072 | 1/B/37:43 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_7MSH_073 | 1/B/83:88 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_7MSH_074 | 1/a/15:25 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_7MSH_075 | 1/a/76:92 | No text annotation Not in a motif group | ||
| HL_7MSH_076 | 1/a/154:159 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.2 | |
| HL_7MSH_077 | 1/a/189:194 | No text annotation Not in a motif group | ||
| HL_7MSH_078 | 1/a/210:217 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_7MSH_079 | 1/a/258:266 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_7MSH_080 | 1/a/295:300 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.2 | |
| HL_7MSH_081 | 1/a/319:332 | No text annotation Not in a motif group | ||
| HL_7MSH_082 | 1/a/341:346 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_03562.2 | |
| HL_7MSH_083 | 1/a/378:383 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.2 | |
| HL_7MSH_084 | 1/a/418:423 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_7MSH_085 | 1/a/458:464 | No text annotation Not in a motif group | geometric HL_4WF9_037 HL_94803.2 | |
| HL_7MSH_086 | 1/a/512:519 | No text annotation Not in a motif group | homologous HL_5J7L_013 NA | |
| HL_7MSH_087 | 1/a/608:614 | No text annotation Not in a motif group | homologous HL_6CZR_085 HL_26881.1 | |
| HL_7MSH_088 | 1/a/680:689 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_7MSH_089 | 1/a/717:722 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_7MSH_090 | 1/a/777:787 | No text annotation Not in a motif group | homologous HL_6CZR_088 HL_12326.1 | |
| HL_7MSH_091 | 1/a/828:842 | No text annotation Not in a motif group | ||
| HL_7MSH_092 | 1/a/855:860 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.2 | |
| HL_7MSH_093 | 1/a/890:895 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.2 | |
| HL_7MSH_094 | 1/a/956:965 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_7MSH_095 | 1/a/1005:1010 | No text annotation Not in a motif group | geometric HL_3OXE_002 HL_42097.2 | |
| HL_7MSH_096 | 1/a/1067:1072 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.2 | |
| HL_7MSH_097 | 1/a/1080:1087 | No text annotation Not in a motif group | geometric HL_4LFB_025 HL_71554.2 | |
| HL_7MSH_098 | 1/a/1125:1132 | No text annotation Not in a motif group | ||
| HL_7MSH_099 | 1/a/1157:1163 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.2 | |
| HL_7MSH_100 | 1/a/1257:1262 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.2 | |
| HL_7MSH_101 | 1/a/1306:1315 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_7MSH_102 | 1/a/1348:1359 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_7MSH_103 | 1/a/1442:1447 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_7MSH_104 | 1/a/1508:1513 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_7MSH_105 | 1/y/13:23 | No text annotation Not in a motif group | homologous HL_3KFU_004 NA | |
| HL_7MSH_106 | 1/y/32:40 | tRNA anticodon loop Not in a motif group | homologous HL_6UFM_002 HL_53597.2 | |
| HL_7MSH_107 | 1/y/54:62 | No text annotation Not in a motif group | homologous HL_4YCP_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7MSH_027 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7MSH_001 | 1/A/24:30, 1/A/598:604 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_4WF9_001 IL_66414.6 | |
| IL_7MSH_002 | 1/A/36:37, 1/A/531:533 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.3 | |
| IL_7MSH_003 | 1/A/42:45, 1/A/522:526 | No text annotation Not in a motif group | ||
| IL_7MSH_004 | 1/A/55:76, 1/A/110:115 | No text annotation Not in a motif group | ||
| IL_7MSH_005 | 1/A/81:85, 1/A/98:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_7MSH_006 | 1/A/185:186, 1/A/214:216 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_7MSH_007 | 1/A/190:196, 1/A/203:210 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.7 | |
| IL_7MSH_008 | 1/A/241:247, 1/A/255:260 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_7MSH_009 | 1/A/285:291, 1/A/300:303 | No text annotation Not in a motif group | ||
| IL_7MSH_010 | 1/A/323:325, 1/A/451:455 | 8-nt loop receptor Not in a motif group | geometric IL_6DME_002 IL_93341.1 | |
| IL_7MSH_011 | 1/A/357:365, 1/A/439:440 | No text annotation Not in a motif group | ||
| IL_7MSH_012 | 1/A/370:372, 1/A/433:434 | Single bulged U Not in a motif group | geometric IL_5TBW_086 IL_83039.14 | |
| IL_7MSH_013 | 1/A/375:377, 1/A/426:430 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.1 | |
| IL_7MSH_014 | 1/A/383:385, 1/A/398:399 | No text annotation Not in a motif group | ||
| IL_7MSH_015 | 1/A/570:573, 1/A/584:597 | No text annotation Not in a motif group | homologous IL_4WF9_015 IL_60992.6 | |
| IL_7MSH_016 | 1/A/624:627, 1/A/656:659 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_7MSH_017 | 1/A/629:631, 1/A/652:654 | No text annotation Not in a motif group | geometric IL_4E48_001 IL_95997.1 | |
| IL_7MSH_018 | 1/A/666:668, 1/A/677:679 | No text annotation Not in a motif group | homologous IL_7RQB_015 IL_95997.1 | |
| IL_7MSH_019 | 1/A/693:695, 1/A/794:795 | Single bulged A Not in a motif group | homologous IL_7A0S_012 IL_37497.3 | |
| IL_7MSH_020 | 1/A/709:713, 1/A/722:726 | AAA cross-strand stack Not in a motif group | homologous IL_7A0S_013 IL_17136.1 | |
| IL_7MSH_021 | 1/A/801:803, 1/A/935:937 | No text annotation Not in a motif group | homologous IL_7A0S_014 IL_95997.1 | |
| IL_7MSH_022 | 1/A/803:807, 1/A/928:935 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_5J7L_260 IL_17470.6 | |
| IL_7MSH_023 | 1/A/826:827, 1/A/892:894 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.3 | |
| IL_7MSH_024 | 1/A/831:832, 1/A/857:859 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_00225.3 | |
| IL_7MSH_025 | 1/A/832:836, 1/A/853:857 | Triple sheared Not in a motif group | geometric IL_4V9F_027 IL_56467.8 | |
| IL_7MSH_026 | 1/A/867:869, 1/A/886:887 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.2 | |
| IL_7MSH_027 | 1/A/904:906, 1/A/916:920 | Multiple bulged bases Not in a motif group | geometric IL_4V9F_030 IL_90991.6 | |
| IL_7MSH_028 | 1/A/966:967, 1/A/1068:1070 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_7MSH_029 | 1/A/973:978, 1/A/1057:1062 | No text annotation Not in a motif group | ||
| IL_7MSH_030 | 1/A/985:991, 1/A/1044:1050 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_7MSH_031 | 1/A/991:992, 1/A/1042:1044 | Minor groove platform Not in a motif group | homologous IL_4WF9_032 IL_42622.2 | |
| IL_7MSH_032 | 1/A/993:998, 1/A/1038:1041 | C-loop Not in a motif group | homologous IL_4WF9_033 IL_02509.1 | |
| IL_7MSH_033 | 1/A/1000:1002, 1/A/1034:1036 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_034 IL_52767.2 | |
| IL_7MSH_034 | 1/A/1005:1010, 1/A/1026:1031 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_7MSH_035 | 1/A/1077:1078, 1/A/1095:1097 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_37497.3 | |
| IL_7MSH_036 | 1/A/1123:1125, 1/A/1289:1290 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_7MSH_037 | 1/A/1127:1131, 1/A/1283:1287 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_7MSH_038 | 1/A/1133:1140, 1/A/1280:1281 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
| IL_7MSH_039 | 1/A/1140:1142, 1/A/1279:1280 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.14 | |
| IL_7MSH_040 | 1/A/1147:1153, 1/A/1269:1274 | No text annotation Not in a motif group | homologous IL_7RQB_039 IL_57188.3 | |
| IL_7MSH_041 | 1/A/1153:1159, 1/A/1253:1269 | No text annotation Not in a motif group | geometric IL_4WF9_040 IL_50715.1 | |
| IL_7MSH_042 | 1/A/1160:1163, 1/A/1250:1252 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7A0S_038 IL_82068.2 | |
| IL_7MSH_043 | 1/A/1328:1330, 1/A/1378:1381 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_7MSH_044 | 1/A/1339:1346, 1/A/1365:1369 | Kink-turn Not in a motif group | homologous IL_7A0S_043 IL_70923.2 | |
| IL_7MSH_045 | 1/A/1393:1400, 1/A/2249:2255 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_7MSH_046 | 1/A/1449:1454, 1/A/1462:1465 | No text annotation Not in a motif group | ||
| IL_7MSH_047 | 1/A/1482:1486, 1/A/1507:1511 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_7MSH_048 | 1/A/1488:1492, 1/A/1501:1505 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_7MSH_049 | 1/A/1544:1546, 1/A/1822:1824 | No text annotation Not in a motif group | geometric IL_3DIL_006 IL_95997.1 | |
| IL_7MSH_050 | 1/A/1556:1562, 1/A/1641:1649 | No text annotation Not in a motif group | ||
| IL_7MSH_051 | 1/A/1594:1597, 1/A/1608:1611 | No text annotation Not in a motif group | geometric IL_4PHY_003 IL_23164.1 | |
| IL_7MSH_052 | 1/A/1655:1659, 1/A/1814:1817 | No text annotation Not in a motif group | ||
| IL_7MSH_053 | 1/A/1670:1673, 1/A/1794:1798 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_7MSH_054 | 1/A/1675:1678, 1/A/1788:1792 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_7MSH_055 | 1/A/1706:1709, 1/A/1759:1763 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_7MSH_056 | 1/A/1711:1716, 1/A/1752:1757 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_7MSH_057 | 1/A/1719:1720, 1/A/1743:1749 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_7MSH_058 | 1/A/1726:1728, 1/A/1736:1737 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.3 | |
| IL_7MSH_059 | 1/A/1886:1891, 1/A/2242:2244 | No text annotation Not in a motif group | ||
| IL_7MSH_060 | 1/A/1898:1900, 1/A/2233:2235 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_7MSH_061 | 1/A/1901:1904, 1/A/2231:2232 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_064 IL_50694.2 | |
| IL_7MSH_062 | 1/A/1904:1909, 1/A/2228:2231 | Intercalated tWH Not in a motif group | geometric IL_7A0S_062 IL_82842.2 | |
| IL_7MSH_063 | 1/A/1921:1926, 1/A/1931:1937 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_7MSH_064 | 1/A/2004:2005, 1/A/2218:2220 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.3 | |
| IL_7MSH_065 | 1/A/2032:2038, 1/A/2047:2055 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_7MSH_066 | 1/A/2071:2074, 1/A/2140:2141 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_7MSH_067 | 1/A/2074:2076, 1/A/2136:2140 | No text annotation Not in a motif group | ||
| IL_7MSH_068 | 1/A/2080:2083, 1/A/2131:2132 | Minor groove platform Not in a motif group | geometric IL_3IWN_005 IL_15052.1 | |
| IL_7MSH_069 | 1/A/2085:2089, 1/A/2125:2129 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_7MSH_070 | 1/A/2090:2095, 1/A/2119:2124 | No text annotation Not in a motif group | ||
| IL_7MSH_071 | 1/A/2097:2101, 1/A/2112:2117 | No text annotation Not in a motif group | ||
| IL_7MSH_072 | 1/A/2171:2172, 1/A/2202:2205 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_7MSH_073 | 1/A/2172:2183, 1/A/2199:2202 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_7MSH_074 | 1/A/2288:2290, 1/A/2855:2856 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.2 | |
| IL_7MSH_075 | 1/A/2292:2294, 1/A/2850:2853 | No text annotation Not in a motif group | ||
| IL_7MSH_076 | 1/A/2307:2308, 1/A/2676:2679 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_7MSH_077 | 1/A/2318:2321, 1/A/2473:2477 | No text annotation Not in a motif group | ||
| IL_7MSH_078 | 1/A/2322:2324, 1/A/2470:2472 | No text annotation Not in a motif group | homologous IL_7A0S_078 IL_95997.1 | |
| IL_7MSH_079 | 1/A/2344:2358, 1/A/2414:2419 | No text annotation Not in a motif group | ||
| IL_7MSH_080 | 1/A/2438:2441, 1/A/2458:2460 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_7MSH_081 | 1/A/2535:2538, 1/A/2554:2559 | No text annotation Not in a motif group | ||
| IL_7MSH_082 | 1/A/2588:2591, 1/A/2602:2605 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_7MSH_083 | 1/A/2639:2641, 1/A/2652:2653 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.2 | |
| IL_7MSH_084 | 1/A/2691:2692, 1/A/2736:2738 | Single stack bend Not in a motif group | homologous IL_4WF9_089 IL_76488.2 | |
| IL_7MSH_085 | 1/A/2692:2693, 1/A/2734:2736 | Major groove platform Not in a motif group | geometric IL_4WF9_090 IL_27635.2 | |
| IL_7MSH_086 | 1/A/2695:2697, 1/A/2731:2732 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.2 | |
| IL_7MSH_087 | 1/A/2697:2699, 1/A/2727:2731 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
| IL_7MSH_088 | 1/A/2699:2701, 1/A/2725:2727 | No text annotation Not in a motif group | geometric IL_5TBW_016 IL_51629.2 | |
| IL_7MSH_089 | 1/A/2704:2708, 1/A/2718:2722 | Triple sheared Not in a motif group | homologous IL_4WF9_093 IL_56467.8 | |
| IL_7MSH_090 | 1/A/2745:2746, 1/A/2818:2820 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_7MSH_091 | 1/A/2748:2750, 1/A/2812:2816 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
| IL_7MSH_092 | 1/A/2750:2751, 1/A/2809:2812 | No text annotation Not in a motif group | geometric IL_4WF9_096 IL_71530.2 | |
| IL_7MSH_093 | 1/A/2760:2761, 1/A/2778:2781 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_7MSH_094 | 1/A/2829:2830, 1/A/2839:2841 | Single bulged A Not in a motif group | homologous IL_4WF9_098 IL_69996.1 | |
| IL_7MSH_095 | 1/A/2874:2878, 1/A/3012:3020 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_7MSH_096 | 1/A/2890:2896, 1/A/2901:2906 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7A0S_094 IL_16458.1 | |
| IL_7MSH_097 | 1/A/2918:2922, 1/A/2963:2965 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_7MSH_098 | 1/A/2925:2929, 1/A/2956:2960 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_7MSH_099 | 1/A/2933:2934, 1/A/2949:2952 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_7MSH_100 | 1/A/2975:2980, 1/A/3000:3005 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_7MSH_101 | 1/A/3073:3074, 1/A/3113:3115 | Single bulged G Not in a motif group | homologous IL_7A0S_099 IL_00225.3 | |
| IL_7MSH_102 | 1/A/3078:3080, 1/A/3106:3109 | Decoding loop related Not in a motif group | homologous IL_7A0S_100 IL_02284.5 | |
| IL_7MSH_103 | 1/A/3082:3087, 1/A/3100:3104 | No text annotation Not in a motif group | homologous IL_7A0S_101 IL_83162.5 | |
| IL_7MSH_104 | 1/B/2:4, 1/B/111:112 | Single bulged A Not in a motif group | geometric IL_7A0S_002 IL_37497.3 | |
| IL_7MSH_105 | 1/B/16:18, 1/B/63:66 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_82068.2 | |
| IL_7MSH_106 | 1/B/22:28, 1/B/54:59 | No text annotation Not in a motif group | ||
| IL_7MSH_107 | 1/B/28:31, 1/B/49:54 | No text annotation Not in a motif group | ||
| IL_7MSH_108 | 1/B/33:37, 1/B/43:47 | Symmetric double minor groove platform Not in a motif group | geometric IL_5NS3_002 IL_58103.6 | |
| IL_7MSH_109 | 1/B/70:78, 1/B/93:101 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_7MSH_110 | 1/a/33:35, 1/a/543:544 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.3 | |
| IL_7MSH_111 | 1/a/47:48, 1/a/395:397 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.3 | |
| IL_7MSH_112 | 1/a/50:55, 1/a/358:360 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_7MSH_113 | 1/a/57:59, 1/a/355:356 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_7MSH_114 | 1/a/66:69, 1/a/98:99 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_7MSH_115 | 1/a/70:72, 1/a/94:97 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_7MSH_116 | 1/a/72:76, 1/a/92:94 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
| IL_7MSH_117 | 1/a/124:127, 1/a/230:231 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_7MSH_118 | 1/a/128:132, 1/a/226:229 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
| IL_7MSH_119 | 1/a/143:149, 1/a/164:171 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_7MSH_120 | 1/a/241:247, 1/a/275:283 | No text annotation Not in a motif group | ||
| IL_7MSH_121 | 1/a/248:252, 1/a/272:274 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
| IL_7MSH_122 | 1/a/291:292, 1/a/303:307 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_7MSH_123 | 1/a/366:368, 1/a/391:392 | Single bulged U Not in a motif group | geometric IL_3D2V_001 IL_83039.14 | |
| IL_7MSH_124 | 1/a/369:374, 1/a/388:390 | No text annotation Not in a motif group | ||
| IL_7MSH_125 | 1/a/374:375, 1/a/386:388 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.3 | |
| IL_7MSH_126 | 1/a/408:415, 1/a/426:432 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_7MSH_127 | 1/a/439:442, 1/a/482:488 | No text annotation Not in a motif group | ||
| IL_7MSH_128 | 1/a/445:449, 1/a/474:479 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
| IL_7MSH_129 | 1/a/449:452, 1/a/471:474 | No text annotation Not in a motif group | ||
| IL_7MSH_130 | 1/a/456:458, 1/a/464:467 | No text annotation Not in a motif group | ||
| IL_7MSH_131 | 1/a/493:502, 1/a/531:534 | No text annotation Not in a motif group | ||
| IL_7MSH_132 | 1/a/502:512, 1/a/519:531 | No text annotation Not in a motif group | ||
| IL_7MSH_133 | 1/a/560:566, 1/a/873:874 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_7MSH_134 | 1/a/571:575, 1/a/748:752 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_7MSH_135 | 1/a/585:587, 1/a/635:636 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.2 | |
| IL_7MSH_136 | 1/a/588:591, 1/a/629:634 | No text annotation Not in a motif group | ||
| IL_7MSH_137 | 1/a/596:602, 1/a/620:624 | No text annotation Not in a motif group | ||
| IL_7MSH_138 | 1/a/645:646, 1/a/742:745 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_7MSH_139 | 1/a/648:649, 1/a/738:740 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.2 | |
| IL_7MSH_140 | 1/a/652:658, 1/a/730:735 | No text annotation Not in a motif group | ||
| IL_7MSH_141 | 1/a/664:669, 1/a/703:708 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_7MSH_142 | 1/a/674:679, 1/a/690:698 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_7MSH_143 | 1/a/765:769, 1/a/795:796 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_7MSH_144 | 1/a/770:774, 1/a/790:794 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_7MSH_145 | 1/a/880:887, 1/a/898:903 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_7MSH_146 | 1/a/914:916, 1/a/1386:1389 | No text annotation Not in a motif group | geometric IL_5TBW_016 IL_51629.2 | |
| IL_7MSH_147 | 1/a/918:921, 1/a/1382:1384 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_7MSH_148 | 1/a/926:928, 1/a/1373:1377 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_7MSH_149 | 1/a/946:947, 1/a/1218:1220 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_7MSH_150 | 1/a/986:990, 1/a/1035:1036 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
| IL_7MSH_151 | 1/a/994:996, 1/a/1028:1031 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_7MSH_152 | 1/a/996:999, 1/a/1016:1028 | No text annotation Not in a motif group | ||
| IL_7MSH_153 | 1/a/1000:1003, 1/a/1012:1015 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_30621.3 | |
| IL_7MSH_154 | 1/a/1003:1005, 1/a/1010:1012 | CC cWW Not in a motif group | geometric IL_4KNQ_002 IL_95997.1 | |
| IL_7MSH_155 | 1/a/1038:1041, 1/a/1200:1202 | No text annotation Not in a motif group | geometric IL_7A0S_031 IL_95997.1 | |
| IL_7MSH_156 | 1/a/1043:1047, 1/a/1196:1198 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_7MSH_157 | 1/a/1048:1050, 1/a/1190:1195 | No text annotation Not in a motif group | geometric IL_3OXE_002 IL_18471.2 | |
| IL_7MSH_158 | 1/a/1050:1052, 1/a/1187:1190 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_51629.2 | |
| IL_7MSH_159 | 1/a/1052:1054, 1/a/1185:1187 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_7MSH_160 | 1/a/1115:1119, 1/a/1136:1141 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_7MSH_161 | 1/a/1120:1125, 1/a/1132:1135 | No text annotation Not in a motif group | homologous IL_6CZR_159 NA | |
| IL_7MSH_162 | 1/a/1150:1153, 1/a/1167:1173 | No text annotation Not in a motif group | homologous IL_4LFB_050 IL_42032.1 | |
| IL_7MSH_163 | 1/a/1239:1245, 1/a/1276:1282 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_7MSH_164 | 1/a/1247:1250, 1/a/1269:1274 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_7MSH_165 | 1/a/1251:1255, 1/a/1264:1268 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_7MSH_166 | 1/a/1295:1300, 1/a/1321:1326 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_7MSH_167 | 1/a/1392:1394, 1/a/1494:1497 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_7MSH_168 | 1/a/1394:1397, 1/a/1490:1494 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_7MSH_169 | 1/a/1398:1400, 1/a/1487:1489 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_7MSH_170 | 1/a/1400:1402, 1/a/1484:1487 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_7MSH_171 | 1/a/1405:1408, 1/a/1478:1481 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_6CZR_168 IL_67743.1 | |
| IL_7MSH_172 | 1/a/1409:1412, 1/a/1474:1477 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_7MSH_173 | 1/a/1417:1420, 1/a/1466:1469 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_100 IL_30621.3 | |
| IL_7MSH_174 | 1/a/1423:1428, 1/a/1459:1463 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_7MSH_175 | 1/a/1428:1430, 1/a/1457:1459 | No text annotation Not in a motif group | geometric IL_6CZR_171 IL_95997.1 | |
| IL_7MSH_176 | 1/a/1433:1436, 1/a/1452:1454 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 | |
| IL_7MSH_177 | 1/a/1438:1441, 1/a/1448:1450 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 | |
| IL_7MSH_178 | 1/y/52:53, 1/y/63:65 | Single base bend Not in a motif group | homologous IL_5IBB_340 IL_92001.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7MSH_001 | 1/A/30:31, 1/A/563:570, 1/A/597:598 | No text annotation Not in a motif group | ||
| J3_7MSH_002 | 1/A/318:320, 1/A/458:464, 1/A/488:493 | No text annotation Not in a motif group | ||
| J3_7MSH_003 | 1/A/329:332, 1/A/351:352, 1/A/445:447 | No text annotation Not in a motif group | ||
| J3_7MSH_004 | 1/A/812:818, 1/A/902:904, 1/A/920:923 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_7MSH_005 | 1/A/827:829, 1/A/861:865, 1/A/889:892 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_7MSH_006 | 1/A/1429:1434, 1/A/1860:1862, 1/A/1874:1877 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_7MSH_007 | 1/A/1437:1440, 1/A/1840:1846, 1/A/1855:1857 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_7MSH_008 | 1/A/1474:1481, 1/A/1512:1516, 1/A/1533:1535 | No text annotation Not in a motif group | ||
| J3_7MSH_009 | 1/A/1547:1553, 1/A/1652:1654, 1/A/1818:1821 | No text annotation Not in a motif group | ||
| J3_7MSH_010 | 1/A/1663:1667, 1/A/1801:1802, 1/A/1805:1810 | No text annotation Not in a motif group | ||
| J3_7MSH_011 | 1/A/2328:2330, 1/A/2433:2437, 1/A/2461:2466 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_7MSH_012 | 1/A/2533:2535, 1/A/2559:2561, 1/A/2570:2575 | No text annotation Not in a motif group | ||
| J3_7MSH_013 | 1/A/2755:2758, 1/A/2783:2785, 1/A/2799:2805 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_7MSH_014 | 1/A/3049:3052, 1/A/3064:3071, 1/A/3117:3121 | No text annotation Not in a motif group | ||
| J3_7MSH_015 | 1/B/9:15, 1/B/67:69, 1/B/102:106 | No text annotation Not in a motif group | ||
| J3_7MSH_016 | 1/a/49:50, 1/a/360:366, 1/a/392:394 | No text annotation Not in a motif group | ||
| J3_7MSH_017 | 1/a/577:579, 1/a/642:645, 1/a/745:746 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_7MSH_018 | 1/a/663:664, 1/a/708:716, 1/a/723:725 | No text annotation Not in a motif group | ||
| J3_7MSH_019 | 1/a/817:820, 1/a/850:854, 1/a/861:867 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_7MSH_020 | 1/a/936:939, 1/a/1227:1229, 1/a/1329:1332 | No text annotation Not in a motif group | ||
| J3_7MSH_021 | 1/a/983:986, 1/a/1036:1038, 1/a/1202:1207 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_7MSH_022 | 1/a/1054:1059, 1/a/1098:1104, 1/a/1179:1185 | No text annotation Not in a motif group | ||
| J3_7MSH_023 | 1/a/1064:1065, 1/a/1074:1080, 1/a/1087:1093 | No text annotation Not in a motif group | ||
| J3_7MSH_024 | 1/a/1107:1109, 1/a/1147:1150, 1/a/1173:1176 | No text annotation Not in a motif group | ||
| J3_7MSH_025 | 1/a/1229:1233, 1/a/1288:1295, 1/a/1326:1329 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: