1K01 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1K01_001 | 1/A/58:67 | No text annotation Not in a motif group | homologous HL_7A0S_001 HL_99167.1 | |
| HL_1K01_002 | 1/A/85:95 | No text annotation Not in a motif group | homologous HL_7A0S_002 HL_05727.1 | |
| HL_1K01_003 | 1/A/121:126 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_1K01_004 | 1/A/133:138 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_1K01_005 | 1/A/146:151 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_1K01_006 | 1/A/172:177 | No text annotation Not in a motif group | ||
| HL_1K01_007 | 1/A/202:207 | No text annotation Not in a motif group | homologous HL_7A0S_007 HL_02862.2 | |
| HL_1K01_008 | 1/A/223:229 | No text annotation Not in a motif group | homologous HL_4WF9_008 HL_67216.7 | |
| HL_1K01_009 | 1/A/316:323 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_1K01_010 | 1/A/330:334 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_1K01_011 | 1/A/338:346 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_1K01_012 | 1/A/396:404 | No text annotation Not in a motif group | ||
| HL_1K01_013 | 1/A/423:430 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
| HL_1K01_014 | 1/A/473:478 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_1K01_015 | 1/A/498:503 | No text annotation Not in a motif group | homologous HL_7A0S_016 HL_42097.1 | |
| HL_1K01_016 | 1/A/552:560 | No text annotation Not in a motif group | ||
| HL_1K01_017 | 1/A/573:586 | No text annotation Not in a motif group | ||
| HL_1K01_018 | 1/A/615:633 | No text annotation Not in a motif group | ||
| HL_1K01_019 | 1/A/640:645 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_1K01_020 | 1/A/651:658 | No text annotation Not in a motif group | homologous HL_7A0S_021 HL_01226.1 | |
| HL_1K01_021 | 1/A/725:732 | No text annotation Not in a motif group | ||
| HL_1K01_022 | 1/A/757:766 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_1K01_023 | 1/A/791:799 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_24068.2 | |
| HL_1K01_024 | 1/A/839:844 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_64365.1 | |
| HL_1K01_026 | 1/A/966:973 | No text annotation Not in a motif group | homologous HL_7A0S_026 HL_42097.1 | |
| HL_1K01_027 | 1/A/989:996 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_64430.2 | |
| HL_1K01_028 | 1/A/1075:1085 | No text annotation Not in a motif group | homologous HL_6PRV_001 HL_07145.1 | |
| HL_1K01_029 | 1/A/1103:1110 | No text annotation Not in a motif group | homologous HL_7RQB_030 NA | |
| HL_1K01_030 | 1/A/1184:1190 | No text annotation Not in a motif group | ||
| HL_1K01_031 | 1/A/1235:1240 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
| HL_1K01_032 | 1/A/1294:1302 | No text annotation Not in a motif group | homologous HL_7A0S_032 HL_89380.2 | |
| HL_1K01_033 | 1/A/1337:1343 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_1K01_034 | 1/A/1376:1381 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_1K01_035 | 1/A/1402:1411 | No text annotation Not in a motif group | homologous HL_7A0S_035 HL_70682.1 | |
| HL_1K01_036 | 1/A/1463:1478 | No text annotation Not in a motif group | ||
| HL_1K01_037 | 1/A/1503:1517 | No text annotation Not in a motif group | ||
| HL_1K01_038 | 1/A/1549:1553 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
| HL_1K01_039 | 1/A/1581:1584 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_1K01_040 | 1/A/1628:1635 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_1K01_041 | 1/A/1647:1652 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_1K01_042 | 1/A/1708:1713 | UNCG Not in a motif group | homologous HL_4WF9_040 HL_03562.2 | |
| HL_1K01_043 | 1/A/1730:1736 | No text annotation Not in a motif group | ||
| HL_1K01_044 | 1/A/1743:1747 | No text annotation Not in a motif group | homologous HL_7A0S_044 HL_76539.2 | |
| HL_1K01_045 | 1/A/1767:1779 | No text annotation Not in a motif group | homologous HL_7A0S_045 HL_43667.1 | |
| HL_1K01_046 | 1/A/1797:1803 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_1K01_047 | 1/A/1854:1862 | No text annotation Not in a motif group | ||
| HL_1K01_048 | 1/A/1931:1941 | No text annotation Not in a motif group | ||
| HL_1K01_049 | 1/A/2010:2019 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_1K01_051 | 1/A/2186:2199 | No text annotation Not in a motif group | ||
| HL_1K01_052 | 1/A/2227:2235 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_1K01_053 | 1/A/2243:2255 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_1K01_054 | 1/A/2282:2292 | No text annotation Not in a motif group | ||
| HL_1K01_055 | 1/A/2303:2310 | No text annotation Not in a motif group | homologous HL_7A0S_055 HL_12078.2 | |
| HL_1K01_056 | 1/A/2332:2343 | No text annotation Not in a motif group | ||
| HL_1K01_057 | 1/A/2353:2358 | No text annotation Not in a motif group | homologous HL_7A0S_057 HL_42097.1 | |
| HL_1K01_058 | 1/A/2383:2392 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_1K01_059 | 1/A/2450:2458 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_1K01_060 | 1/A/2507:2514 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_1K01_061 | 1/A/2530:2536 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_1K01_062 | 1/A/2573:2578 | No text annotation Not in a motif group | homologous HL_7A0S_062 HL_42097.1 | |
| HL_1K01_063 | 1/A/2637:2642 | GNRA Not in a motif group | geometric HL_4V9F_009 HL_42097.1 | |
| HL_1K01_064 | 1/A/2680:2685 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_1K01_065 | 1/A/2725:2739 | No text annotation Not in a motif group | ||
| HL_1K01_067 | 1/A/2794:2802 | No text annotation Not in a motif group | homologous HL_4WF9_064 HL_27930.1 | |
| HL_1K01_068 | 1/A/2831:2836 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1K01_025 | No text annotation | ||
| HL_1K01_050 | No text annotation | ||
| HL_1K01_066 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1K01_001 | 1/A/24:30, 1/A/520:526 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_1K01_002 | 1/A/36:37, 1/A/454:456 | Single bulged A Not in a motif group | geometric IL_7A0S_002 IL_37497.2 | |
| IL_1K01_003 | 1/A/37:39, 1/A/452:454 | No text annotation Not in a motif group | geometric IL_3LA5_001 IL_95997.1 | |
| IL_1K01_004 | 1/A/42:43, 1/A/447:449 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_1K01_005 | 1/A/80:84, 1/A/96:103 | Kink-turn Not in a motif group | homologous IL_7A0S_004 IL_45067.2 | |
| IL_1K01_006 | 1/A/160:161, 1/A/189:191 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_1K01_007 | 1/A/165:171, 1/A/178:185 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_1K01_008 | 1/A/215:222, 1/A/230:236 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_007 IL_04346.7 | |
| IL_1K01_010 | 1/A/299:303, 1/A/359:363 | No text annotation Not in a motif group | geometric IL_1U6B_004 IL_90802.1 | |
| IL_1K01_011 | 1/A/303:306, 1/A/354:359 | No text annotation Not in a motif group | homologous IL_7A0S_008 IL_07235.1 | |
| IL_1K01_012 | 1/A/391:393, 1/A/407:409 | Isolated cWH basepair Not in a motif group | geometric IL_4KQ0_002 IL_51629.2 | |
| IL_1K01_013 | 1/A/492:495, 1/A/506:519 | No text annotation Not in a motif group | ||
| IL_1K01_014 | 1/A/543:545, 1/A/567:569 | No text annotation Not in a motif group | geometric IL_1U9S_007 IL_95997.1 | |
| IL_1K01_015 | 1/A/600:602, 1/A/678:679 | Single bulged A Not in a motif group | homologous IL_7A0S_012 IL_37497.2 | |
| IL_1K01_016 | 1/A/685:687, 1/A/819:821 | No text annotation Not in a motif group | geometric IL_4LFB_010 IL_95997.1 | |
| IL_1K01_017 | 1/A/687:691, 1/A/812:819 | No text annotation Not in a motif group | homologous IL_7A0S_015 IL_17470.6 | |
| IL_1K01_018 | 1/A/700:702, 1/A/786:788 | No text annotation Not in a motif group | ||
| IL_1K01_019 | 1/A/715:716, 1/A/741:743 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_1K01_020 | 1/A/716:721, 1/A/736:741 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7A0S_018 IL_86929.2 | |
| IL_1K01_021 | 1/A/751:754, 1/A/769:771 | No text annotation Not in a motif group | ||
| IL_1K01_022 | 1/A/754:756, 1/A/767:769 | No text annotation Not in a motif group | geometric IL_5TBW_046 IL_95997.1 | |
| IL_1K01_023 | 1/A/850:851, 1/A/951:953 | No text annotation Not in a motif group | ||
| IL_1K01_024 | 1/A/857:864, 1/A/938:945 | No text annotation Not in a motif group | ||
| IL_1K01_025 | 1/A/864:866, 1/A/936:938 | No text annotation Not in a motif group | geometric IL_3LA5_001 IL_95997.1 | |
| IL_1K01_026 | 1/A/871:875, 1/A/927:931 | No text annotation Not in a motif group | ||
| IL_1K01_027 | 1/A/875:876, 1/A/925:927 | Minor groove platform Not in a motif group | geometric IL_5J7L_247 IL_42622.2 | |
| IL_1K01_028 | 1/A/877:881, 1/A/921:924 | C-loop Not in a motif group | homologous IL_7A0S_029 IL_02509.1 | |
| IL_1K01_029 | 1/A/883:885, 1/A/917:919 | Isolated near basepair Not in a motif group | homologous IL_7A0S_030 IL_52767.2 | |
| IL_1K01_030 | 1/A/963:965, 1/A/974:976 | No text annotation Not in a motif group | homologous IL_7A0S_031 IL_95997.1 | |
| IL_1K01_031 | 1/A/1003:1005, 1/A/1171:1174 | No text annotation Not in a motif group | geometric IL_5UNE_001 IL_53251.2 | |
| IL_1K01_032 | 1/A/1005:1007, 1/A/1170:1171 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_1K01_033 | 1/A/1009:1013, 1/A/1164:1168 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
| IL_1K01_034 | 1/A/1015:1022, 1/A/1161:1162 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
| IL_1K01_035 | 1/A/1022:1024, 1/A/1160:1161 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.13 | |
| IL_1K01_036 | 1/A/1027:1035, 1/A/1150:1157 | No text annotation Not in a motif group | ||
| IL_1K01_037 | 1/A/1042:1045, 1/A/1132:1134 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_041 IL_82068.2 | |
| IL_1K01_038 | 1/A/1046:1048, 1/A/1129:1131 | No text annotation Not in a motif group | geometric IL_6IA2_002 IL_95997.1 | |
| IL_1K01_040 | 1/A/1051:1054, 1/A/1123:1126 | No text annotation Not in a motif group | ||
| IL_1K01_041 | 1/A/1054:1062, 1/A/1120:1123 | No text annotation Not in a motif group | ||
| IL_1K01_042 | 1/A/1062:1063, 1/A/1118:1120 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_76488.2 | |
| IL_1K01_044 | 1/A/1070:1073, 1/A/1087:1090 | No text annotation Not in a motif group | ||
| IL_1K01_046 | 1/A/1210:1212, 1/A/1260:1263 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_1K01_047 | 1/A/1218:1220, 1/A/1252:1254 | No text annotation Not in a motif group | homologous IL_7A0S_042 IL_51629.2 | |
| IL_1K01_048 | 1/A/1221:1228, 1/A/1247:1251 | Kink-turn Not in a motif group | homologous IL_7A0S_043 IL_70923.2 | |
| IL_1K01_049 | 1/A/1232:1234, 1/A/1241:1243 | Intercalated cWW Not in a motif group | homologous IL_7A0S_044 IL_82842.2 | |
| IL_1K01_050 | 1/A/1332:1336, 1/A/1344:1346 | C-loop Not in a motif group | homologous IL_7A0S_047 IL_37712.2 | |
| IL_1K01_051 | 1/A/1364:1368, 1/A/1389:1393 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_1K01_052 | 1/A/1370:1374, 1/A/1383:1387 | tSH-tHW-tHS Not in a motif group | homologous IL_7A0S_049 IL_17136.1 | |
| IL_1K01_053 | 1/A/1418:1420, 1/A/1611:1613 | No text annotation Not in a motif group | homologous IL_4WF9_053 NA | |
| IL_1K01_054 | 1/A/1426:1430, 1/A/1598:1605 | No text annotation Not in a motif group | ||
| IL_1K01_055 | 1/A/1430:1438, 1/A/1590:1598 | No text annotation Not in a motif group | ||
| IL_1K01_056 | 1/A/1446:1449, 1/A/1573:1577 | No text annotation Not in a motif group | ||
| IL_1K01_057 | 1/A/1451:1454, 1/A/1567:1571 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
| IL_1K01_058 | 1/A/1483:1490, 1/A/1533:1539 | No text annotation Not in a motif group | ||
| IL_1K01_059 | 1/A/1499:1501, 1/A/1519:1521 | No text annotation Not in a motif group | geometric IL_2ZNI_001 IL_51629.2 | |
| IL_1K01_060 | 1/A/1546:1547, 1/A/1555:1557 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_76488.2 | |
| IL_1K01_061 | 1/A/1547:1549, 1/A/1553:1555 | No text annotation Not in a motif group | geometric IL_7A0S_026 IL_51629.2 | |
| IL_1K01_062 | 1/A/1668:1673, 1/A/1987:1989 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_1K01_063 | 1/A/1680:1682, 1/A/1978:1980 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
| IL_1K01_064 | 1/A/1683:1686, 1/A/1976:1977 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_008 IL_50694.2 | |
| IL_1K01_065 | 1/A/1686:1691, 1/A/1973:1976 | No text annotation Not in a motif group | ||
| IL_1K01_066 | 1/A/1703:1708, 1/A/1713:1719 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_1K01_069 | 1/A/1761:1762, 1/A/1963:1965 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
| IL_1K01_070 | 1/A/1789:1795, 1/A/1805:1813 | Kink-turn related Not in a motif group | homologous IL_7A0S_065 IL_17069.3 | |
| IL_1K01_071 | 1/A/1829:1832, 1/A/1885:1886 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_1K01_072 | 1/A/1833:1835, 1/A/1880:1884 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
| IL_1K01_073 | 1/A/1838:1842, 1/A/1875:1877 | No text annotation Not in a motif group | ||
| IL_1K01_074 | 1/A/1916:1930, 1/A/1942:1950 | No text annotation Not in a motif group | ||
| IL_1K01_075 | 1/A/2033:2035, 1/A/2596:2597 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_1K01_076 | 1/A/2037:2040, 1/A/2590:2594 | No text annotation Not in a motif group | homologous IL_7RQB_079 IL_01206.1 | |
| IL_1K01_077 | 1/A/2050:2052, 1/A/2421:2422 | No text annotation Not in a motif group | ||
| IL_1K01_078 | 1/A/2053:2054, 1/A/2417:2420 | Minor groove platform Not in a motif group | homologous IL_4WF9_081 IL_42622.2 | |
| IL_1K01_079 | 1/A/2064:2066, 1/A/2215:2218 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_082 IL_38958.7 | |
| IL_1K01_080 | 1/A/2068:2071, 1/A/2210:2213 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5C5W_001 IL_30621.2 | |
| IL_1K01_081 | 1/A/2269:2271, 1/A/2319:2321 | No text annotation Not in a motif group | geometric IL_5TBW_016 IL_51629.2 | |
| IL_1K01_083 | 1/A/2276:2278, 1/A/2296:2300 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_086 IL_38958.7 | |
| IL_1K01_085 | 1/A/2329:2332, 1/A/2343:2346 | No text annotation Not in a motif group | ||
| IL_1K01_086 | 1/A/2376:2378, 1/A/2396:2398 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_1K01_087 | 1/A/2380:2382, 1/A/2393:2394 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_1K01_088 | 1/A/2432:2433, 1/A/2477:2479 | Single stack bend Not in a motif group | homologous IL_7RQB_091 IL_76488.2 | |
| IL_1K01_089 | 1/A/2433:2434, 1/A/2475:2477 | Major groove platform Not in a motif group | geometric IL_5Y85_005 IL_27635.1 | |
| IL_1K01_090 | 1/A/2436:2438, 1/A/2472:2473 | Major groove platform Not in a motif group | geometric IL_7A0S_085 IL_27635.1 | |
| IL_1K01_091 | 1/A/2438:2440, 1/A/2468:2472 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_1K01_092 | 1/A/2445:2450, 1/A/2458:2463 | No text annotation Not in a motif group | geometric IL_5J7L_057 IL_19954.2 | |
| IL_1K01_093 | 1/A/2489:2491, 1/A/2553:2557 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_1K01_094 | 1/A/2491:2492, 1/A/2550:2553 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_71530.2 | |
| IL_1K01_095 | 1/A/2501:2502, 1/A/2519:2522 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_1K01_097 | 1/A/2570:2571, 1/A/2580:2582 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_1K01_099 | 1/A/2615:2619, 1/A/2754:2762 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_1K01_100 | 1/A/2631:2637, 1/A/2642:2647 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7A0S_094 IL_16458.1 | |
| IL_1K01_101 | 1/A/2659:2664, 1/A/2704:2707 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
| IL_1K01_102 | 1/A/2665:2670, 1/A/2698:2703 | No text annotation Not in a motif group | ||
| IL_1K01_103 | 1/A/2674:2675, 1/A/2690:2694 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_1K01_104 | 1/A/2717:2722, 1/A/2742:2747 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_1K01_106 | 1/A/2813:2814, 1/A/2853:2855 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_1K01_107 | 1/A/2818:2820, 1/A/2846:2849 | Decoding loop related Not in a motif group | homologous IL_7A0S_100 IL_02284.5 | |
| IL_1K01_108 | 1/A/2822:2827, 1/A/2840:2844 | No text annotation Not in a motif group | homologous IL_7A0S_101 IL_83162.5 | |
| IL_1K01_109 | 1/A/1035:1041, 1/A/1135:1150 | No text annotation Not in a motif group | geometric IL_7A0S_037 IL_50715.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1K01_009 | No text annotation | ||
| IL_1K01_039 | No text annotation | ||
| IL_1K01_043 | No text annotation | ||
| IL_1K01_045 | No text annotation | ||
| IL_1K01_067 | No text annotation | ||
| IL_1K01_068 | No text annotation | ||
| IL_1K01_082 | No text annotation | ||
| IL_1K01_084 | No text annotation | ||
| IL_1K01_096 | Isolated cWS basepair | ||
| IL_1K01_098 | UG cWW | ||
| IL_1K01_105 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_1K01_001 | 1/A/696:700, 1/A/788:790, 1/A/800:807 | No text annotation Not in a motif group | ||
| J3_1K01_002 | 1/A/710:713, 1/A/745:749, 1/A/773:778 | No text annotation Not in a motif group | ||
| J3_1K01_003 | 1/A/1066:1068, 1/A/1092:1102, 1/A/1111:1115 | No text annotation Not in a motif group | ||
| J3_1K01_004 | 1/A/1311:1316, 1/A/1641:1643, 1/A/1656:1659 | No text annotation Not in a motif group | homologous J3_7A0S_006 NA | |
| J3_1K01_005 | 1/A/1319:1322, 1/A/1621:1627, 1/A/1636:1638 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_1K01_006 | 1/A/1825:1827, 1/A/1888:1916, 1/A/1950:1955 | No text annotation Not in a motif group | ||
| J3_1K01_007 | 1/A/2274:2276, 1/A/2300:2302, 1/A/2311:2316 | No text annotation Not in a motif group | ||
| J3_1K01_008 | 1/A/2496:2499, 1/A/2524:2527, 1/A/2539:2546 | No text annotation Not in a motif group | ||
| J3_1K01_009 | 1/A/30:31, 1/A/485:492, 1/A/519:520 | No text annotation Not in a motif group | ||
| J3_1K01_010 | 1/A/55:56, 1/A/69:75, 1/A/108:112 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_1K01_011 | 1/A/2789:2790, 1/A/2806:2811, 1/A/2857:2861 | No text annotation Not in a motif group | homologous J3_7A0S_013 NA |
Problematic loops
No problematic loops
Coloring options: