4V4W Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V4W_001 | 1/AA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_4V4W_002 | 1/AA/80:89 | No text annotation Not in a motif group | homologous HL_4LFB_002 HL_30784.2 | |
| HL_4V4W_003 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_4V4W_004 | 1/AA/184:193 | No text annotation Not in a motif group | ||
| HL_4V4W_005 | 1/AA/200:217 | No text annotation Not in a motif group | homologous HL_6CZR_076 HL_34168.2 | |
| HL_4V4W_006 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_4V4W_007 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_4V4W_008 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V4W_009 | 1/AA/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_4V4W_010 | 1/AA/379:384 | GNRA Not in a motif group | homologous HL_6CZR_081 HL_42097.1 | |
| HL_4V4W_011 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_4V4W_012 | 1/AA/458:474 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_4V4W_013 | 1/AA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_4V4W_014 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_4V4W_015 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_4V4W_016 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_4V4W_017 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_4V4W_018 | 1/AA/837:849 | No text annotation Not in a motif group | homologous HL_5J7L_018 HL_34168.2 | |
| HL_4V4W_019 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_4V4W_020 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_4V4W_021 | 1/AA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V4W_022 | 1/AA/1011:1018 | No text annotation Not in a motif group | homologous HL_6CZR_093 NA | |
| HL_4V4W_023 | 1/AA/1028:1033 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_4V4W_024 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_4V4W_025 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4V4W_026 | 1/AA/1134:1140 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_03562.2 | |
| HL_4V4W_027 | 1/AA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_4V4W_028 | 1/AA/1265:1270 | No text annotation Not in a motif group | homologous HL_6CZR_099 NA | |
| HL_4V4W_029 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_4V4W_030 | 1/AA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_4V4W_031 | 1/AA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_4V4W_032 | 1/AA/1515:1520 | Other HL Not in a motif group | geometric HL_4V88_222 HL_16173.1 | |
| HL_4V4W_033 | 1/AU/13:22 | No text annotation Not in a motif group | homologous HL_6JXM_001 HL_25462.2 | |
| HL_4V4W_034 | 1/AU/30:40 | No text annotation Not in a motif group | homologous HL_5IB8_208 NA | |
| HL_4V4W_035 | 1/AU/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V90_034 HL_22280.1 | |
| HL_4V4W_036 | 1/AV/13:22 | No text annotation Not in a motif group | homologous HL_3WFS_001 NA | |
| HL_4V4W_037 | 1/AV/30:40 | No text annotation Not in a motif group | homologous HL_5IB8_208 NA | |
| HL_4V4W_038 | 1/AV/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V90_034 HL_22280.1 | |
| HL_4V4W_039 | 1/AW/13:22 | No text annotation Not in a motif group | homologous HL_6JXM_001 HL_25462.2 | |
| HL_4V4W_040 | 1/AW/30:40 | No text annotation Not in a motif group | homologous HL_5IB8_208 NA | |
| HL_4V4W_041 | 1/AW/53:61 | No text annotation Not in a motif group | homologous HL_2AKE_003 NA | |
| HL_4V4W_042 | 1/B0/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_4V4W_043 | 1/B0/86:96 | No text annotation Not in a motif group | homologous HL_7A0S_002 HL_05727.1 | |
| HL_4V4W_044 | 1/B0/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_4V4W_045 | 1/B0/154:172 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_4V4W_046 | 1/B0/194:201 | No text annotation Not in a motif group | geometric HL_4V9F_006 HL_06192.2 | |
| HL_4V4W_047 | 1/B0/225:230 | No text annotation Not in a motif group | ||
| HL_4V4W_048 | 1/B0/246:252 | No text annotation Not in a motif group | homologous HL_4WF9_008 HL_67216.7 | |
| HL_4V4W_049 | 1/B0/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_4V4W_050 | 1/B0/327:335 | No text annotation Not in a motif group | homologous HL_4WF9_012 HL_08002.8 | |
| HL_4V4W_051 | 1/B0/381:393 | No text annotation Not in a motif group | geometric HL_4V9F_013 HL_71554.2 | |
| HL_4V4W_052 | 1/B0/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4V4W_053 | 1/B0/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_4V4W_054 | 1/B0/543:551 | No text annotation Not in a motif group | ||
| HL_4V4W_055 | 1/B0/566:575 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V9F_010 HL_89380.2 | |
| HL_4V4W_056 | 1/B0/606:622 | No text annotation Not in a motif group | ||
| HL_4V4W_057 | 1/B0/628:635 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_4V4W_058 | 1/B0/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_4V4W_059 | 1/B0/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_4V4W_060 | 1/B0/744:753 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_4V4W_061 | 1/B0/779:785 | No text annotation Not in a motif group | geometric HL_6JQ6_004 HL_03562.2 | |
| HL_4V4W_062 | 1/B0/826:831 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_64365.1 | |
| HL_4V4W_063 | 1/B0/883:893 | No text annotation Not in a motif group | ||
| HL_4V4W_064 | 1/B0/952:965 | No text annotation Not in a motif group | ||
| HL_4V4W_065 | 1/B0/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_4V4W_066 | 1/B0/1064:1074 | No text annotation Not in a motif group | homologous HL_6PRV_001 HL_07145.1 | |
| HL_4V4W_067 | 1/B0/1092:1099 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.2 | |
| HL_4V4W_068 | 1/B0/1170:1179 | No text annotation Not in a motif group | geometric HL_4V9F_032 HL_49288.1 | |
| HL_4V4W_069 | 1/B0/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_4V4W_070 | 1/B0/1281:1289 | No text annotation Not in a motif group | homologous HL_7A0S_032 HL_89380.2 | |
| HL_4V4W_071 | 1/B0/1323:1331 | No text annotation Not in a motif group | geometric HL_7A0S_041 HL_26881.1 | |
| HL_4V4W_072 | 1/B0/1363:1368 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_94803.1 | |
| HL_4V4W_073 | 1/B0/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_4V4W_074 | 1/B0/1451:1461 | No text annotation Not in a motif group | ||
| HL_4V4W_075 | 1/B0/1486:1502 | No text annotation Not in a motif group | ||
| HL_4V4W_076 | 1/B0/1612:1619 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_4V4W_077 | 1/B0/1629:1637 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_4V4W_078 | 1/B0/1691:1696 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_03562.2 | |
| HL_4V4W_079 | 1/B0/1718:1741 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_4V4W_080 | 1/B0/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_4V4W_081 | 1/B0/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_4V4W_082 | 1/B0/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_4V4W_083 | 1/B0/1864:1878 | No text annotation Not in a motif group | geometric HL_5J7L_151 HL_90617.2 | |
| HL_4V4W_084 | 1/B0/1910:1920 | No text annotation Not in a motif group | geometric HL_4UYK_001 HL_36684.1 | |
| HL_4V4W_085 | 1/B0/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_4V4W_086 | 1/B0/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_4V4W_087 | 1/B0/2108:2182 | No text annotation Not in a motif group | ||
| HL_4V4W_088 | 1/B0/2209:2215 | GNRA Not in a motif group | geometric HL_6N2V_003 HL_42097.1 | |
| HL_4V4W_089 | 1/B0/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4V4W_090 | 1/B0/2264:2276 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_4V4W_091 | 1/B0/2303:2313 | No text annotation Not in a motif group | ||
| HL_4V4W_092 | 1/B0/2324:2331 | No text annotation Not in a motif group | homologous HL_4WF9_052 HL_12078.2 | |
| HL_4V4W_093 | 1/B0/2354:2363 | No text annotation Not in a motif group | ||
| HL_4V4W_094 | 1/B0/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_4V4W_095 | 1/B0/2404:2413 | No text annotation Not in a motif group | geometric HL_4V83_139 HL_53597.2 | |
| HL_4V4W_096 | 1/B0/2470:2480 | No text annotation Not in a motif group | ||
| HL_4V4W_097 | 1/B0/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_4V4W_098 | 1/B0/2549:2559 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_4V4W_099 | 1/B0/2594:2599 | No text annotation Not in a motif group | homologous HL_7A0S_062 HL_42097.1 | |
| HL_4V4W_100 | 1/B0/2658:2663 | No text annotation Not in a motif group | homologous HL_7A0S_063 HL_42097.1 | |
| HL_4V4W_101 | 1/B0/2700:2707 | Ribsomal LSU H95 Not in a motif group | homologous HL_7A0S_064 HL_46680.1 | |
| HL_4V4W_102 | 1/B0/2745:2759 | No text annotation Not in a motif group | homologous HL_4WF9_062 HL_56677.7 | |
| HL_4V4W_103 | 1/B0/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_4V4W_104 | 1/B0/2854:2863 | No text annotation Not in a motif group | ||
| HL_4V4W_105 | 1/B9/33:49 | No text annotation Not in a motif group | ||
| HL_4V4W_106 | 1/B9/86:90 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V4W_001 | 1/AA/43:45, 1/AA/396:399 | No text annotation Not in a motif group | geometric IL_5AOX_001 IL_95997.1 | |
| IL_4V4W_002 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_4V4W_003 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_4V4W_004 | 1/AA/67:70, 1/AA/98:102 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.2 | |
| IL_4V4W_005 | 1/AA/128:131, 1/AA/231:233 | No text annotation Not in a motif group | ||
| IL_4V4W_006 | 1/AA/132:136, 1/AA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_4V4W_007 | 1/AA/144:146, 1/AA/176:178 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_4V4W_008 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_4V4W_009 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_4V4W_010 | 1/AA/249:253, 1/AA/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
| IL_4V4W_011 | 1/AA/292:293, 1/AA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4V4W_012 | 1/AA/371:375, 1/AA/389:390 | C-loop Not in a motif group | geometric IL_4LFB_015 IL_75255.1 | |
| IL_4V4W_013 | 1/AA/375:377, 1/AA/386:389 | Single bulged G, near cWW Not in a motif group | homologous IL_6CZR_128 IL_52767.2 | |
| IL_4V4W_014 | 1/AA/408:416, 1/AA/427:434 | No text annotation Not in a motif group | ||
| IL_4V4W_015 | 1/AA/504:511, 1/AA/540:541 | No text annotation Not in a motif group | ||
| IL_4V4W_016 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4V4W_017 | 1/AA/579:584, 1/AA/757:762 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_3LQX_002 IL_76308.4 | |
| IL_4V4W_018 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_4V4W_019 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_4V4W_020 | 1/AA/604:612, 1/AA/628:634 | No text annotation Not in a motif group | ||
| IL_4V4W_021 | 1/AA/656:659, 1/AA/746:750 | No text annotation Not in a motif group | ||
| IL_4V4W_022 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4V4W_023 | 1/AA/682:688, 1/AA/699:708 | No text annotation Not in a motif group | ||
| IL_4V4W_024 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_4V4W_025 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_4V4W_026 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4V4W_027 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_4V4W_028 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_4V4W_029 | 1/AA/933:936, 1/AA/1379:1384 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_93211.1 | |
| IL_4V4W_030 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_4V4W_031 | 1/AA/1025:1028, 1/AA/1033:1036 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.2 | |
| IL_4V4W_032 | 1/AA/1047:1050, 1/AA/1208:1210 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_4V4W_033 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_4V4W_034 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_4V4W_035 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_4V4W_036 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_95997.1 | |
| IL_4V4W_037 | 1/AA/1121:1128, 1/AA/1143:1152 | No text annotation Not in a motif group | ||
| IL_4V4W_038 | 1/AA/1128:1132, 1/AA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_4V4W_039 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_4V4W_040 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_4V4W_041 | 1/AA/1303:1309, 1/AA/1328:1334 | No text annotation Not in a motif group | ||
| IL_4V4W_042 | 1/AA/1405:1407, 1/AA/1494:1496 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_4V4W_043 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_4V4W_044 | 1/AA/1412:1414, 1/AA/1486:1488 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_95997.1 | |
| IL_4V4W_045 | 1/AA/1416:1419, 1/AA/1481:1484 | No text annotation Not in a motif group | ||
| IL_4V4W_046 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_4V4W_047 | 1/AA/1440:1448, 1/AA/1455:1461 | No text annotation Not in a motif group | ||
| IL_4V4W_048 | 1/B0/24:30, 1/B0/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_4WF9_001 IL_66414.6 | |
| IL_4V4W_049 | 1/B0/30:31, 1/B0/474:510 | No text annotation Not in a motif group | ||
| IL_4V4W_050 | 1/B0/36:37, 1/B0/442:444 | Single bulged A Not in a motif group | homologous IL_4WF9_002 IL_37497.2 | |
| IL_4V4W_051 | 1/B0/42:45, 1/B0/433:437 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_4V4W_052 | 1/B0/81:85, 1/B0/97:105 | Kink-turn Not in a motif group | homologous IL_7A0S_004 IL_45067.2 | |
| IL_4V4W_053 | 1/B0/183:184, 1/B0/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_4V4W_054 | 1/B0/188:194, 1/B0/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_006 IL_04346.7 | |
| IL_4V4W_055 | 1/B0/238:245, 1/B0/253:259 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_007 IL_04346.7 | |
| IL_4V4W_056 | 1/B0/273:281, 1/B0/359:364 | No text annotation Not in a motif group | ||
| IL_4V4W_057 | 1/B0/564:566, 1/B0/575:577 | No text annotation Not in a motif group | homologous IL_7RQB_015 IL_95997.1 | |
| IL_4V4W_058 | 1/B0/672:674, 1/B0/806:808 | No text annotation Not in a motif group | geometric IL_4V9F_105 IL_95997.1 | |
| IL_4V4W_059 | 1/B0/674:679, 1/B0/798:806 | No text annotation Not in a motif group | ||
| IL_4V4W_060 | 1/B0/702:707, 1/B0/724:730 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_4V4W_061 | 1/B0/738:741, 1/B0/756:758 | No text annotation Not in a motif group | geometric IL_6CZR_136 IL_05564.2 | |
| IL_4V4W_062 | 1/B0/875:879, 1/B0/898:902 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_4V4W_063 | 1/B0/997:1002, 1/B0/1153:1158 | UAA/GAN with extra cWW Not in a motif group | geometric IL_7RQB_107 IL_49767.5 | |
| IL_4V4W_064 | 1/B0/1004:1014, 1/B0/1148:1151 | No text annotation Not in a motif group | ||
| IL_4V4W_065 | 1/B0/1017:1024, 1/B0/1140:1145 | No text annotation Not in a motif group | ||
| IL_4V4W_066 | 1/B0/1031:1034, 1/B0/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_4V4W_067 | 1/B0/1038:1041, 1/B0/1114:1117 | No text annotation Not in a motif group | ||
| IL_4V4W_068 | 1/B0/1041:1052, 1/B0/1107:1114 | No text annotation Not in a motif group | ||
| IL_4V4W_069 | 1/B0/1059:1062, 1/B0/1076:1079 | No text annotation Not in a motif group | homologous IL_5J7L_285 IL_23544.2 | |
| IL_4V4W_070 | 1/B0/1087:1091, 1/B0/1100:1102 | Major groove platform with extra cWW Not in a motif group | geometric IL_5D8H_003 IL_05564.2 | |
| IL_4V4W_071 | 1/B0/1202:1207, 1/B0/1239:1243 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_4V4W_072 | 1/B0/1208:1215, 1/B0/1234:1238 | Kink-turn Not in a motif group | homologous IL_7A0S_043 IL_70923.2 | |
| IL_4V4W_073 | 1/B0/1310:1313, 1/B0/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_290 IL_50694.2 | |
| IL_4V4W_074 | 1/B0/1319:1323, 1/B0/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_4V4W_075 | 1/B0/1350:1355, 1/B0/1376:1381 | UAA/GAN with extra cWW Not in a motif group | geometric IL_4WF9_104 IL_49767.5 | |
| IL_4V4W_076 | 1/B0/1357:1359, 1/B0/1372:1374 | No text annotation Not in a motif group | geometric IL_4V9F_017 IL_95997.1 | |
| IL_4V4W_077 | 1/B0/1359:1362, 1/B0/1369:1372 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.2 | |
| IL_4V4W_078 | 1/B0/1424:1429, 1/B0/1564:1574 | No text annotation Not in a motif group | ||
| IL_4V4W_079 | 1/B0/1432:1435, 1/B0/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_30621.2 | |
| IL_4V4W_080 | 1/B0/1436:1440, 1/B0/1551:1556 | tSH-tHW-tHS Not in a motif group | geometric IL_4V9F_055 IL_17136.1 | |
| IL_4V4W_081 | 1/B0/1449:1451, 1/B0/1461:1462 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_76488.2 | |
| IL_4V4W_082 | 1/B0/1472:1474, 1/B0/1518:1519 | No text annotation Not in a motif group | ||
| IL_4V4W_083 | 1/B0/1651:1659, 1/B0/2001:2006 | No text annotation Not in a motif group | ||
| IL_4V4W_084 | 1/B0/1659:1666, 1/B0/1994:2001 | No text annotation Not in a motif group | ||
| IL_4V4W_085 | 1/B0/1666:1669, 1/B0/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_4V4W_086 | 1/B0/1669:1674, 1/B0/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_5J7L_307 IL_82842.2 | |
| IL_4V4W_087 | 1/B0/1686:1691, 1/B0/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_4V4W_088 | 1/B0/1770:1771, 1/B0/1980:1982 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_4V4W_089 | 1/B0/1798:1804, 1/B0/1813:1821 | Kink-turn related Not in a motif group | homologous IL_4WF9_069 IL_17069.3 | |
| IL_4V4W_090 | 1/B0/2050:2053, 1/B0/2616:2618 | No text annotation Not in a motif group | geometric IL_6CZR_136 IL_05564.2 | |
| IL_4V4W_091 | 1/B0/2054:2056, 1/B0/2612:2615 | No text annotation Not in a motif group | homologous IL_4WF9_079 IL_54678.5 | |
| IL_4V4W_092 | 1/B0/2072:2075, 1/B0/2435:2437 | No text annotation Not in a motif group | ||
| IL_4V4W_093 | 1/B0/2103:2105, 1/B0/2184:2186 | No text annotation Not in a motif group | geometric IL_5TBW_115 IL_95997.1 | |
| IL_4V4W_094 | 1/B0/2105:2108, 1/B0/2182:2184 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_4V4W_095 | 1/B0/2297:2299, 1/B0/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_080 IL_38958.7 | |
| IL_4V4W_096 | 1/B0/2350:2353, 1/B0/2364:2367 | No text annotation Not in a motif group | ||
| IL_4V4W_097 | 1/B0/2457:2461, 1/B0/2489:2494 | No text annotation Not in a motif group | ||
| IL_4V4W_098 | 1/B0/2466:2470, 1/B0/2480:2484 | Triple sheared Not in a motif group | homologous IL_4WF9_093 IL_56467.8 | |
| IL_4V4W_099 | 1/B0/2515:2516, 1/B0/2568:2570 | Single stack bend Not in a motif group | geometric IL_6FZ0_001 IL_92001.1 | |
| IL_4V4W_100 | 1/B0/2521:2523, 1/B0/2540:2544 | No text annotation Not in a motif group | ||
| IL_4V4W_101 | 1/B0/2591:2592, 1/B0/2601:2603 | Single bulged A Not in a motif group | homologous IL_5J7L_344 IL_37497.2 | |
| IL_4V4W_102 | 1/B0/2652:2658, 1/B0/2663:2668 | No text annotation Not in a motif group | ||
| IL_4V4W_103 | 1/B0/2680:2684, 1/B0/2725:2727 | C-loop Not in a motif group | homologous IL_4WF9_101 IL_63596.6 | |
| IL_4V4W_104 | 1/B0/2687:2691, 1/B0/2718:2722 | UAA/GAN Not in a motif group | geometric IL_4V9F_094 IL_07235.1 | |
| IL_4V4W_105 | 1/B0/2695:2696, 1/B0/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_4V4W_106 | 1/B0/2737:2742, 1/B0/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_4WF9_104 IL_49767.5 | |
| IL_4V4W_107 | 1/B0/2838:2840, 1/B0/2877:2880 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 | |
| IL_4V4W_108 | 1/B0/2843:2846, 1/B0/2870:2874 | No text annotation Not in a motif group | ||
| IL_4V4W_109 | 1/B0/2847:2852, 1/B0/2865:2869 | No text annotation Not in a motif group | homologous IL_4WF9_108 IL_83162.5 | |
| IL_4V4W_110 | 1/B9/23:30, 1/B9/54:60 | No text annotation Not in a motif group | ||
| IL_4V4W_111 | 1/B9/30:32, 1/B9/50:54 | 8-nt loop receptor Not in a motif group | geometric IL_6DME_002 IL_93341.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V4W_001 | 1/AA/46:52, 1/AA/359:369, 1/AA/392:395 | No text annotation Not in a motif group | ||
| J3_4V4W_002 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation Not in a motif group | ||
| J3_4V4W_003 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4V4W_004 | 1/AA/954:962, 1/AA/973:985, 1/AA/1220:1226 | No text annotation Not in a motif group | ||
| J3_4V4W_005 | 1/AA/1063:1069, 1/AA/1106:1113, 1/AA/1187:1193 | No text annotation Not in a motif group | ||
| J3_4V4W_006 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_4V4W_007 | 1/B0/683:689, 1/B0/773:778, 1/B0/786:794 | No text annotation Not in a motif group | ||
| J3_4V4W_008 | 1/B0/697:700, 1/B0/732:737, 1/B0/759:765 | No text annotation Not in a motif group | ||
| J3_4V4W_009 | 1/B0/1055:1058, 1/B0/1080:1087, 1/B0/1102:1104 | No text annotation Not in a motif group | ||
| J3_4V4W_010 | 1/B0/1298:1303, 1/B0/1625:1628, 1/B0/1638:1642 | No text annotation Not in a motif group | ||
| J3_4V4W_011 | 1/B0/1306:1309, 1/B0/1605:1611, 1/B0/1620:1622 | No text annotation Not in a motif group | ||
| J3_4V4W_012 | 1/B0/1442:1447, 1/B0/1464:1468, 1/B0/1523:1549 | No text annotation Not in a motif group | ||
| J3_4V4W_013 | 1/B0/2089:2093, 1/B0/2196:2200, 1/B0/2223:2230 | No text annotation Not in a motif group | ||
| J3_4V4W_014 | 1/B0/2295:2297, 1/B0/2321:2323, 1/B0/2332:2337 | No text annotation Not in a motif group | homologous J3_4WF9_008 NA | |
| J3_4V4W_015 | 1/B0/2516:2521, 1/B0/2544:2549, 1/B0/2559:2568 | No text annotation Not in a motif group | ||
| J3_4V4W_016 | 1/B0/2812:2815, 1/B0/2831:2836, 1/B0/2882:2888 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: