Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7ACR_0011/1/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_7ACR_0021/1/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_7ACR_0031/1/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_7ACR_0041/1/137:142No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_10278.1
HL_7ACR_0051/1/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_7ACR_0061/1/194:201No text annotation
Not in a motif group
homologous
HL_4WF9_006
HL_06192.2
HL_7ACR_0071/1/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_7ACR_0081/1/246:252No text annotation
Not in a motif group
homologous
HL_4WF9_008
HL_67216.7
HL_7ACR_0091/1/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_7ACR_0101/1/319:323No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_75407.1
HL_7ACR_0111/1/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_7ACR_0121/1/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_7ACR_0131/1/410:417No text annotation
Not in a motif group
homologous
HL_7A0S_014
HL_96598.1
HL_7ACR_0141/1/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.1
HL_7ACR_0151/1/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.1
HL_7ACR_0161/1/544:549No text annotation
Not in a motif group
homologous
HL_7RQB_017
NA
HL_7ACR_0171/1/566:575No text annotation
Not in a motif group
homologous
HL_7RQB_018
HL_89380.2
HL_7ACR_0181/1/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_7ACR_0191/1/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_7ACR_0201/1/641:647No text annotation
Not in a motif group
homologous
HL_5J7L_153
HL_77805.2
HL_7ACR_0211/1/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_7ACR_0221/1/744:753No text annotation
Not in a motif group
homologous
HL_5J7L_155
NA
HL_7ACR_0231/1/779:785No text annotation
Not in a motif group
homologous
HL_5J7L_156
HL_74322.1
HL_7ACR_0241/1/826:831No text annotation
Not in a motif group
homologous
HL_7A0S_024
HL_64365.1
HL_7ACR_0251/1/880:897No text annotation
Not in a motif group
HL_7ACR_0261/1/954:963No text annotation
Not in a motif group
homologous
HL_5J7L_159
NA
HL_7ACR_0271/1/978:985No text annotation
Not in a motif group
homologous
HL_4WF9_028
HL_64430.2
HL_7ACR_0281/1/1058:1080No text annotation
Not in a motif group
HL_7ACR_0291/1/1091:1100No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_7ACR_0301/1/1172:1177No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.2
HL_7ACR_0311/1/1222:1227No text annotation
Not in a motif group
homologous
HL_7A0S_031
HL_87030.2
HL_7ACR_0321/1/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_7ACR_0331/1/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_7ACR_0341/1/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_7ACR_0351/1/1389:1398No text annotation
Not in a motif group
homologous
HL_4WF9_035
HL_69023.2
HL_7ACR_0361/1/1451:1459No text annotation
Not in a motif group
geometric
HL_5TBW_004
HL_98426.1
HL_7ACR_0371/1/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_7ACR_0381/1/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_7ACR_0391/1/1565:1568No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_38927.2
HL_7ACR_0401/1/1612:1619No text annotation
Not in a motif group
HL_7ACR_0411/1/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_7ACR_0421/1/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_7ACR_0431/1/1724:1736No text annotation
Not in a motif group
HL_7ACR_0441/1/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_7ACR_0451/1/1777:1787No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_7ACR_0461/1/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_7ACR_0471/1/1868:1873No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_7ACR_0481/1/1910:1920No text annotation
Not in a motif group
homologous
HL_5J7L_181
NA
HL_7ACR_0491/1/1949:1957No text annotation
Not in a motif group
homologous
HL_4WF9_046
HL_51824.1
HL_7ACR_0501/1/2027:2036No text annotation
Not in a motif group
HL_7ACR_0511/1/2124:2174No text annotation
Not in a motif group
HL_7ACR_0521/1/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_7ACR_0531/1/2248:2256No text annotation
Not in a motif group
homologous
HL_7A0S_052
HL_53171.2
HL_7ACR_0541/1/2264:2276No text annotation
Not in a motif group
homologous
HL_5J7L_187
HL_19870.6
HL_7ACR_0551/1/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_7ACR_0561/1/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_7ACR_0571/1/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_7ACR_0581/1/2374:2379No text annotation
Not in a motif group
homologous
HL_7A0S_057
HL_42097.1
HL_7ACR_0591/1/2404:2413No text annotation
Not in a motif group
homologous
HL_7A0S_058
HL_30784.2
HL_7ACR_0601/1/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_7ACR_0611/1/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_7ACR_0621/1/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_7ACR_0631/1/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_7ACR_0641/1/2658:2663No text annotation
Not in a motif group
homologous
HL_7A0S_063
HL_42097.1
HL_7ACR_0651/1/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_7A0S_064
HL_46680.1
HL_7ACR_0661/1/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_7ACR_0671/1/2796:2799No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_7ACR_0681/1/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_7ACR_0691/1/2856:2861No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_42097.1
HL_7ACR_0701/2/12:22No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_7ACR_0711/2/78:91No text annotation
Not in a motif group
HL_7ACR_0721/2/158:163GNRA
Not in a motif group
geometric
HL_3NMU_002
HL_42097.1
HL_7ACR_0731/2/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_7ACR_0741/2/206:213No text annotation
Not in a motif group
HL_7ACR_0751/2/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_7ACR_0761/2/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_7ACR_0771/2/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_7ACR_0781/2/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_7ACR_0791/2/379:384GNRA
Not in a motif group
homologous
HL_6CZR_081
HL_42097.1
HL_7ACR_0801/2/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_7ACR_0811/2/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_7ACR_0821/2/521:528No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_7ACR_0831/2/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_7ACR_0841/2/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_7ACR_0851/2/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_7ACR_0861/2/786:796No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_7ACR_0871/2/840:846No text annotation
Not in a motif group
HL_7ACR_0881/2/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_42097.1
HL_7ACR_0891/2/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_7ACR_0901/2/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_7ACR_0911/2/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_7ACR_0921/2/1027:1034No text annotation
Not in a motif group
HL_7ACR_0931/2/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_7ACR_0941/2/1089:1096No text annotation
Not in a motif group
homologous
HL_5J7L_024
HL_71554.2
HL_7ACR_0951/2/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_7ACR_0961/2/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_7ACR_0971/2/1265:1270GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_42097.1
HL_7ACR_0981/2/1314:1323No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_89380.2
HL_7ACR_0991/2/1356:1366No text annotation
Not in a motif group
homologous
HL_5J7L_029
HL_96366.1
HL_7ACR_1001/2/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_7ACR_1011/2/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_7ACR_1021/3/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_7ACR_1031/3/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2
HL_7ACR_1041/4/50:66No text annotation
Not in a motif group
HL_7ACR_1051/4/108:138No text annotation
Not in a motif group
HL_7ACR_1061/4/152:163No text annotation
Not in a motif group
HL_7ACR_1071/4/210:219No text annotation
Not in a motif group
HL_7ACR_1081/4/259:272No text annotation
Not in a motif group
HL_7ACR_1091/4/340:348T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4V8Q_110
HL_71309.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7ACR_0011/1/2:4,
1/1/2899:2902
No text annotation
Not in a motif group
geometric
IL_4N0T_004
IL_46796.1
IL_7ACR_0021/1/24:30,
1/1/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_7A0S_001
IL_66414.6
IL_7ACR_0031/1/36:37,
1/1/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.2
IL_7ACR_0041/1/43:44,
1/1/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_7ACR_0051/1/81:85,
1/1/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_7ACR_0061/1/183:184,
1/1/212:214
Single stack bend
Not in a motif group
homologous
IL_4WF9_007
IL_76488.2
IL_7ACR_0071/1/188:194,
1/1/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7A0S_006
IL_04346.7
IL_7ACR_0081/1/239:245,
1/1/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_7ACR_0091/1/269:271,
1/1/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_7ACR_0111/1/293:295,
1/1/343:347
No text annotation
Not in a motif group
geometric
IL_7RQB_013
IL_69440.1
IL_7ACR_0121/1/295:297,
1/1/341:343
No text annotation
Not in a motif group
geometric
IL_353D_001
IL_95997.1
IL_7ACR_0131/1/481:484,
1/1/496:509
No text annotation
Not in a motif group
geometric
IL_5J7L_255
IL_60992.6
IL_7ACR_0141/1/536:539,
1/1/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_7ACR_0151/1/564:566,
1/1/575:577
No text annotation
Not in a motif group
geometric
IL_4WF9_017
IL_95997.1
IL_7ACR_0161/1/606:610,
1/1/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_7ACR_0171/1/672:674,
1/1/806:808
No text annotation
Not in a motif group
homologous
IL_7RQB_017
IL_95997.1
IL_7ACR_0181/1/674:678,
1/1/799:806
No text annotation
Not in a motif group
geometric
IL_7RQB_018
IL_17470.6
IL_7ACR_0191/1/697:698,
1/1/763:765
Single bulged A
Not in a motif group
homologous
IL_7A0S_016
IL_37497.2
IL_7ACR_0201/1/702:703,
1/1/728:730
Single bulged G
Not in a motif group
homologous
IL_7RQB_020
IL_00225.2
IL_7ACR_0211/1/703:707,
1/1/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_7ACR_0221/1/738:740,
1/1/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.1
IL_7ACR_0231/1/775:777,
1/1/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_4V9F_030
IL_90991.6
IL_7ACR_0241/1/844:847,
1/1/933:934
Other IL
Not in a motif group
homologous
IL_5J7L_267
IL_92001.1
IL_7ACR_0251/1/847:848,
1/1/930:933
Stack outside cWW
Not in a motif group
geometric
IL_5J7L_268
IL_37629.1
IL_7ACR_0261/1/850:851,
1/1/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_7ACR_0271/1/856:862,
1/1/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_5J7L_270
IL_93830.3
IL_7ACR_0281/1/862:863,
1/1/913:915
Minor groove platform
Not in a motif group
geometric
IL_4V9F_034
IL_42622.2
IL_7ACR_0291/1/864:868,
1/1/909:912
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_7ACR_0301/1/870:872,
1/1/905:907
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_034
IL_52767.2
IL_7ACR_0311/1/875:879,
1/1/898:902
No text annotation
Not in a motif group
IL_7ACR_0321/1/994:996,
1/1/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_7ACR_0331/1/998:1002,
1/1/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_7A0S_033
IL_89002.2
IL_7ACR_0341/1/1003:1011,
1/1/1150:1152
No text annotation
Not in a motif group
IL_7ACR_0351/1/1011:1013,
1/1/1149:1150
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.13
IL_7ACR_0361/1/1018:1024,
1/1/1140:1144
No text annotation
Not in a motif group
geometric
IL_5J7L_280
IL_57188.3
IL_7ACR_0371/1/1024:1030,
1/1/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_7ACR_0381/1/1031:1035,
1/1/1120:1123
No text annotation
Not in a motif group
IL_7ACR_0391/1/1038:1041,
1/1/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_7ACR_0401/1/1043:1053,
1/1/1106:1112
No text annotation
Not in a motif group
IL_7ACR_0411/1/1087:1090,
1/1/1101:1102
Multiple bulged bases
Not in a motif group
geometric
IL_6IV9_001
IL_16396.2
IL_7ACR_0421/1/1196:1198,
1/1/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_7A0S_041
IL_52767.2
IL_7ACR_0431/1/1202:1206,
1/1/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_7ACR_0441/1/1208:1215,
1/1/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_7ACR_0451/1/1262:1269,
1/1/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_7ACR_0461/1/1310:1313,
1/1/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_7ACR_0471/1/1319:1323,
1/1/1331:1333
Major groove minor groove platform with tHH
Not in a motif group
homologous
IL_4WF9_050
IL_37712.2
IL_7ACR_0481/1/1351:1355,
1/1/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_7ACR_0491/1/1357:1361,
1/1/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_7ACR_0501/1/1415:1416,
1/1/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_7ACR_0511/1/1417:1421,
1/1/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_7RQB_055
IL_89002.2
IL_7ACR_0521/1/1432:1435,
1/1/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_7ACR_0531/1/1437:1440,
1/1/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_7ACR_0541/1/1450:1451,
1/1/1459:1461
Single bulged U
Not in a motif group
homologous
IL_5J7L_298
IL_83039.13
IL_7ACR_0551/1/1468:1471,
1/1/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_7ACR_0561/1/1474:1478,
1/1/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_7ACR_0571/1/1481:1482,
1/1/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_7ACR_0581/1/1489:1491,
1/1/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_7ACR_0591/1/1526:1532,
1/1/1539:1546
No text annotation
Not in a motif group
IL_7ACR_0601/1/1651:1656,
1/1/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_7ACR_0611/1/1663:1665,
1/1/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_7ACR_0621/1/1666:1669,
1/1/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_50694.2
IL_7ACR_0631/1/1669:1674,
1/1/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_4WF9_065
IL_82842.2
IL_7ACR_0641/1/1686:1691,
1/1/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_5J7L_308
IL_65969.2
IL_7ACR_0651/1/1712:1718,
1/1/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_7ACR_0661/1/1720:1724,
1/1/1736:1740
Triple sheared
Not in a motif group
geometric
IL_5J7L_310
IL_56467.8
IL_7ACR_0671/1/1770:1771,
1/1/1980:1982
Single bulged A
Not in a motif group
homologous
IL_4WF9_068
IL_37497.2
IL_7ACR_0681/1/1798:1804,
1/1/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7A0S_065
IL_17069.3
IL_7ACR_0691/1/1837:1840,
1/1/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_7ACR_0701/1/1841:1842,
1/1/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_7ACR_0711/1/1846:1849,
1/1/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.6
IL_7ACR_0721/1/1864:1868,
1/1/1873:1878
No text annotation
Not in a motif group
IL_7ACR_0731/1/1933:1934,
1/1/1964:1967
Multiple bulged bases
Not in a motif group
homologous
IL_7A0S_071
IL_59677.2
IL_7ACR_0741/1/1934:1945,
1/1/1961:1964
No text annotation
Not in a motif group
geometric
IL_7A0S_072
IL_81589.2
IL_7ACR_0751/1/2050:2052,
1/1/2617:2618
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.1
IL_7ACR_0761/1/2054:2056,
1/1/2612:2615
No text annotation
Not in a motif group
IL_7ACR_0771/1/2064:2066,
1/1/2444:2446
No text annotation
Not in a motif group
homologous
IL_5J7L_322
NA
IL_7ACR_0781/1/2067:2070,
1/1/2441:2443
No text annotation
Not in a motif group
geometric
IL_5C5W_002
IL_95997.1
IL_7ACR_0791/1/2070:2071,
1/1/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7A0S_076
IL_42622.2
IL_7ACR_0801/1/2081:2083,
1/1/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7A0S_077
IL_38958.7
IL_7ACR_0811/1/2085:2087,
1/1/2232:2234
No text annotation
Not in a motif group
homologous
IL_7RQB_083
IL_95997.1
IL_7ACR_0821/1/2098:2105,
1/1/2184:2191
No text annotation
Not in a motif group
IL_7ACR_0831/1/2202:2204,
1/1/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_7ACR_0841/1/2350:2353,
1/1/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_7ACR_0851/1/2400:2403,
1/1/2414:2416
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_1U6B_001
IL_82068.2
IL_7ACR_0861/1/2453:2455,
1/1/2496:2500
No text annotation
Not in a motif group
homologous
IL_5J7L_335
NA
IL_7ACR_0871/1/2456:2459,
1/1/2493:2495
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_63450.2
IL_7ACR_0881/1/2459:2461,
1/1/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_337
IL_92788.2
IL_7ACR_0891/1/2466:2470,
1/1/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_7ACR_0901/1/2507:2509,
1/1/2579:2582
No text annotation
Not in a motif group
homologous
IL_5J7L_339
NA
IL_7ACR_0911/1/2510:2512,
1/1/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_4WF9_095
IL_90933.2
IL_7ACR_0921/1/2512:2513,
1/1/2571:2574
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_098
IL_71530.2
IL_7ACR_0931/1/2522:2523,
1/1/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_7ACR_0941/1/2588:2590,
1/1/2604:2606
No text annotation
Not in a motif group
homologous
IL_7RQB_100
NA
IL_7ACR_0951/1/2591:2592,
1/1/2601:2603
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.2
IL_7ACR_0961/1/2636:2640,
1/1/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_7ACR_0971/1/2652:2658,
1/1/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_7A0S_094
IL_16458.1
IL_7ACR_0981/1/2680:2684,
1/1/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_7ACR_0991/1/2687:2691,
1/1/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_7ACR_1001/1/2695:2696,
1/1/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_7ACR_1011/1/2737:2742,
1/1/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_7ACR_1021/1/2795:2796,
1/1/2799:2801
Single bulged A
Not in a motif group
geometric
IL_4V9F_025
IL_37497.2
IL_7ACR_1031/1/2806:2811,
1/1/2889:2892
No text annotation
Not in a motif group
IL_7ACR_1041/1/2838:2839,
1/1/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_4WF9_106
IL_16396.2
IL_7ACR_1051/1/2843:2846,
1/1/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_7ACR_1061/1/2847:2852,
1/1/2865:2869
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.5
IL_7ACR_1071/2/30:32,
1/2/552:553
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_00225.2
IL_7ACR_1081/2/44:45,
1/2/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_7ACR_1091/2/47:52,
1/2/359:361
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_11178.1
IL_7ACR_1101/2/54:56,
1/2/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_7ACR_1111/2/63:66,
1/2/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_7ACR_1121/2/67:69,
1/2/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_7ACR_1131/2/70:74,
1/2/96:98
No text annotation
Not in a motif group
IL_7ACR_1141/2/74:78,
1/2/91:96
No text annotation
Not in a motif group
IL_7ACR_1151/2/128:131,
1/2/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_7ACR_1161/2/132:136,
1/2/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_7ACR_1171/2/144:146,
1/2/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_7ACR_1181/2/147:153,
1/2/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_7ACR_1191/2/156:158,
1/2/163:165
No text annotation
Not in a motif group
geometric
IL_1Y27_001
IL_51629.2
IL_7ACR_1201/2/203:206,
1/2/213:214
Minor groove platform
Not in a motif group
geometric
IL_3IWN_005
IL_15052.1
IL_7ACR_1211/2/242:247,
1/2/277:284
Kink-turn with non-sequential stacking
Not in a motif group
geometric
IL_4V88_402
IL_45067.2
IL_7ACR_1221/2/249:252,
1/2/274:275
No text annotation
Not in a motif group
homologous
IL_5J7L_015
IL_48100.2
IL_7ACR_1231/2/292:293,
1/2/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_7ACR_1241/2/367:369,
1/2/392:393
Single bulged U
Not in a motif group
homologous
IL_6CZR_126
IL_83039.13
IL_7ACR_1251/2/371:375,
1/2/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_7ACR_1261/2/375:376,
1/2/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.2
IL_7ACR_1271/2/409:416,
1/2/427:433
No text annotation
Not in a motif group
homologous
IL_5J7L_020
IL_28026.1
IL_7ACR_1281/2/440:442,
1/2/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_7ACR_1291/2/446:450,
1/2/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_7ACR_1301/2/504:511,
1/2/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_7ACR_1311/2/515:521,
1/2/528:536
No text annotation
Not in a motif group
homologous
IL_4LFB_021
NA
IL_7ACR_1321/2/569:575,
1/2/880:881
No text annotation
Not in a motif group
homologous
IL_5J7L_026
IL_69996.1
IL_7ACR_1331/2/580:584,
1/2/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_7ACR_1341/2/593:596,
1/2/644:646
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_63450.2
IL_7ACR_1351/2/597:599,
1/2/639:643
8-nt loop receptor
Not in a motif group
geometric
IL_6CK5_002
IL_93341.1
IL_7ACR_1361/2/605:612,
1/2/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_7ACR_1371/2/654:655,
1/2/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_7ACR_1381/2/659:660,
1/2/745:747
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_7ACR_1391/2/662:666,
1/2/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_7ACR_1401/2/684:688,
1/2/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_7ACR_1411/2/774:778,
1/2/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_7ACR_1421/2/779:783,
1/2/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_7ACR_1431/2/887:894,
1/2/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_7ACR_1441/2/922:923,
1/2/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.2
IL_7ACR_1451/2/925:927,
1/2/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.2
IL_7ACR_1461/2/933:935,
1/2/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_7ACR_1471/2/953:954,
1/2/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_7ACR_1481/2/986:988,
1/2/1218:1219
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_76488.2
IL_7ACR_1491/2/988:990,
1/2/1215:1218
No text annotation
Not in a motif group
IL_7ACR_1501/2/993:997,
1/2/1044:1045
No text annotation
Not in a motif group
IL_7ACR_1511/2/998:999,
1/2/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_7ACR_1521/2/1047:1050,
1/2/1208:1210
Single bulged G, near cWW
Not in a motif group
geometric
IL_6CZR_128
IL_52767.2
IL_7ACR_1531/2/1050:1056,
1/2/1204:1208
No text annotation
Not in a motif group
IL_7ACR_1541/2/1057:1058,
1/2/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_7ACR_1551/2/1060:1061,
1/2/1195:1197
Single bulged A
Not in a motif group
geometric
IL_5J7L_049
IL_37497.2
IL_7ACR_1561/2/1061:1063,
1/2/1193:1195
No text annotation
Not in a motif group
geometric
IL_4P3U_012
IL_95997.1
IL_7ACR_1571/2/1124:1129,
1/2/1143:1149
No text annotation
Not in a motif group
IL_7ACR_1581/2/1129:1132,
1/2/1142:1143
Minor groove platform
Not in a motif group
geometric
IL_5J7L_007
IL_15052.1
IL_7ACR_1591/2/1158:1161,
1/2/1175:1181
No text annotation
Not in a motif group
homologous
IL_5J7L_053
IL_42032.1
IL_7ACR_1601/2/1247:1253,
1/2/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_7ACR_1611/2/1255:1258,
1/2/1277:1282
No text annotation
Not in a motif group
homologous
IL_6CZR_161
IL_75461.4
IL_7ACR_1621/2/1259:1263,
1/2/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_7ACR_1631/2/1303:1308,
1/2/1329:1334
No text annotation
Not in a motif group
geometric
IL_5J7L_057
IL_19954.2
IL_7ACR_1641/2/1309:1311,
1/2/1326:1328
Isolated cWH basepair
Not in a motif group
geometric
IL_3CZW_002
IL_51629.2
IL_7ACR_1651/2/1399:1404,
1/2/1497:1504
No text annotation
Not in a motif group
IL_7ACR_1661/2/1405:1409,
1/2/1491:1496
No text annotation
Not in a motif group
homologous
IL_6CZR_167
NA
IL_7ACR_1671/2/1412:1414,
1/2/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_7ACR_1681/2/1416:1419,
1/2/1481:1484
Double sheared
Not in a motif group
homologous
IL_6CZR_169
IL_09705.9
IL_7ACR_1691/2/1430:1435,
1/2/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_7ACR_1701/2/1440:1442,
1/2/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_7ACR_1711/2/1445:1448,
1/2/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5
IL_7ACR_1721/3/17:18,
1/3/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.2
IL_7ACR_1731/3/23:28,
1/3/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_7ACR_1741/3/30:31,
1/3/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_7RQB_113
IL_09061.6
IL_7ACR_1751/3/34:38,
1/3/44:48
Symmetric double minor groove platform
Not in a motif group
geometric
IL_5J7L_358
IL_58103.6
IL_7ACR_1761/3/71:79,
1/3/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3
IL_7ACR_1771/4/143:146,
1/4/169:176
No text annotation
Not in a motif group
IL_7ACR_1781/4/147:152,
1/4/163:168
No text annotation
Not in a motif group
IL_7ACR_1791/4/202:209,
1/4/220:227
No text annotation
Not in a motif group
IL_7ACR_1801/4/252:259,
1/4/272:279
No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
IL_7ACR_010No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7ACR_0011/1/30:31,
1/1/474:481,
1/1/509:510
No text annotation
Not in a motif group
homologous
J3_7RQB_001
NA
J3_7ACR_0021/1/56:57,
1/1/70:76,
1/1/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_7ACR_0031/1/683:689,
1/1/773:775,
1/1/791:794
No text annotation
Not in a motif group
homologous
J3_5J7L_038
NA
J3_7ACR_0041/1/698:700,
1/1/732:736,
1/1/760:763
No text annotation
Not in a motif group
J3_7ACR_0051/1/1055:1058,
1/1/1080:1087,
1/1/1102:1104
No text annotation
Not in a motif group
J3_7ACR_0061/1/1298:1303,
1/1/1625:1627,
1/1/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_7ACR_0071/1/1306:1309,
1/1/1605:1611,
1/1/1620:1622
No text annotation
Not in a motif group
homologous
J3_7A0S_007
NA
J3_7ACR_0081/1/1344:1349,
1/1/1382:1385,
1/1/1402:1403
No text annotation
Not in a motif group
homologous
J3_5J7L_043
NA
J3_7ACR_0091/1/2091:2093,
1/1/2196:2200,
1/1/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_7ACR_0101/1/2295:2299,
1/1/2317:2323,
1/1/2332:2337
No text annotation
Not in a motif group
J3_7ACR_0111/1/2517:2520,
1/1/2545:2547,
1/1/2561:2567
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_7ACR_0121/1/2789:2791,
1/1/2805:2806,
1/1/2892:2894
No text annotation
Not in a motif group
J3_7ACR_0131/1/2812:2815,
1/1/2831:2836,
1/1/2882:2888
No text annotation
Not in a motif group
homologous
J3_5J7L_048
NA
J3_7ACR_0141/2/46:47,
1/2/361:367,
1/2/393:395
No text annotation
Not in a motif group
J3_7ACR_0151/2/586:588,
1/2/651:654,
1/2/754:755
No text annotation
Not in a motif group
J3_7ACR_0161/2/826:829,
1/2/857:861,
1/2/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_7ACR_0171/2/936:939,
1/2/1344:1350,
1/2/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_7ACR_0181/2/943:946,
1/2/1235:1237,
1/2/1337:1340
No text annotation
Not in a motif group
J3_7ACR_0191/2/955:962,
1/2/973:984,
1/2/1221:1225
No text annotation
Not in a motif group
J3_7ACR_0211/2/1003:1007,
1/2/1022:1027,
1/2/1034:1037
No text annotation
Not in a motif group
J3_7ACR_0231/2/1073:1074,
1/2/1083:1087,
1/2/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_7ACR_0241/2/1116:1118,
1/2/1155:1158,
1/2/1181:1184
No text annotation
Not in a motif group
J3_7ACR_0251/2/1237:1241,
1/2/1296:1303,
1/2/1334:1337
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA
J3_7ACR_0261/3/10:16,
1/3/68:70,
1/3/106:110
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA

Problematic loops

#loop idProblemSequence
J3_7ACR_020No text annotation
J3_7ACR_022No text annotation

Coloring options:
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