Hairpin Loop Motif Atlas Release 2.0

#	Motif	Core Nts	Instances
1	HL_30528.1 View exemplar Basepair signature: cWW-tSH-R-R History status: New id, 1 parent GNRA (108) GNRA variation (8) GNRA with GA tSW pair (2) GNRA related (1)	6	400
2	HL_73671.1 View exemplar Basepair signature: cWW-R-R-tWH-R-R-R History status: New id, 1 parent T-loop with 2 stacked bulged bases (55) T-loop with 2 bulged bases not stacked (4)	9	117
3	HL_48112.1 View exemplar Basepair signature: cWW-tSW-R History status: New id, 2 parents UNCG (18) UNCG variation (3)	5	59
4	HL_72253.1 View exemplar Basepair signature: cWW-bif-R-R-R-R-R History status: New id, 1 parent tRNA anticodon loop (16) Anticodon loop related (1)	9	42
5	HL_72935.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R History status: New id, 1 parent GNRA with tandem sheared (6) GNRA related (1)	8	42
6	HL_41542.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, 1 parent Pseudoknot geometry (8)	8	30
7	HL_56406.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, 2 parents GNRA variation (2)	7	28
8	HL_56205.1 View exemplar Basepair signature: cWW-R-tSH-R-R-R-R History status: New id, 1 parent	10	26
9	HL_90745.1 View exemplar Basepair signature: cWW-tSH-R-R History status: New id, 1 parent GNRA (6) GNRA variation (1)	6	24
10	HL_68864.1 View exemplar Basepair signature: cWW-tWH-R-R-R History status: New id, 1 parent T-loop with 2 stacked bulged bases (3) T-loop with 1 bulged base (2) Other HL (1)	7	24
11	HL_08396.1 View exemplar Basepair signature: cWW-R History status: New id, 1 parent Mini UNCG (6)	4	22
12	HL_79306.1 View exemplar Basepair signature: cWW-bif-R-tSH-R History status: New id, 1 parent GNRA with extra near cWW (1)	8	20
13	HL_82706.1 View exemplar Basepair signature: cWW-tSH-R-R-R History status: New id, 1 parent GNRA (1)	7	19
14	HL_55724.1 View exemplar Basepair signature: cWW-R-R History status: New id, 1 parent	5	18
15	HL_03270.1 View exemplar Basepair signature: cWW-R History status: New id, 1 parent	4	18
16	HL_06138.1 View exemplar Basepair signature: cWW-cWW-R-R-R History status: New id, 1 parent T-loop related (2)	8	18
17	HL_69480.1 View exemplar Basepair signature: cWW-R-R-tWH History status: New id, 1 parent T-loop with unstacked turn (9)	6	18
18	HL_60919.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, 1 parent LSU P loop (1)	8	17
19	HL_36830.1 View exemplar Basepair signature: cWW-R-R History status: New id, 1 parent Pseudoknot geometry with 3' bulge (3)	5	15
20	HL_38117.1 View exemplar Basepair signature: cWW-tSH-tHH-tWW-R-R-R History status: New id, 1 parent	11	15
21	HL_55197.1 View exemplar Basepair signature: cWW-tWH-R-tSH-R History status: New id, 1 parent	8	15
22	HL_11434.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, 1 parent Pseudoknot geometry (7)	7	14
23	HL_89583.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, 1 parent	8	14
24	HL_03712.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, 2 parents Pseudoknot geometry (2) Ribsomal LSU H95 (2)	6	14
25	HL_05568.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R History status: New id, 1 parent	9	14
26	HL_03958.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R History status: New id, 1 parent U1 small nuclear ribonucleoprotein A binding hairpin (8)	12	14
27	HL_26938.1 View exemplar Basepair signature: cWW-tSH-R-R-R History status: New id, 1 parent	7	14
28	HL_90168.1 View exemplar Basepair signature: cWW-R-R-tWH-R History status: New id, 1 parent	7	14
29	HL_70574.1 View exemplar Basepair signature: cWW-R-tHW-R-R-R-R-R-R History status: New id, 1 parent	11	13
30	HL_56490.1 View exemplar Basepair signature: cWW-R History status: New id, 1 parent	4	13
31	HL_57089.1 View exemplar Basepair signature: cWW-cSW-R-R-R-R History status: New id, 1 parent	8	13
32	HL_77780.1 View exemplar Basepair signature: cWW-tWH-tWH-R History status: New id, no parents	7	13
33	HL_05901.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, 1 parent	6	13
34	HL_69076.1 View exemplar Basepair signature: cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW History status: New id, 1 parent	13	12
35	HL_95765.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: New id, 1 parent	11	11
36	HL_97879.1 View exemplar Basepair signature: cWW History status: New id, 1 parent	3	11
37	HL_20284.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: New id, 2 parents	9	10
38	HL_03271.1 View exemplar Basepair signature: cWW-R-R-R-tSH-R-R History status: New id, no parents	10	10
39	HL_62686.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: New id, 1 parent	9	10
40	HL_07137.1 View exemplar Basepair signature: cWW-cSH History status: New id, 1 parent tRNA D-loop (7) Other HL (1)	5	10
41	HL_89954.1 View exemplar Basepair signature: cWW History status: New id, 1 parent Mini UNCG (4)	3	10
42	HL_01306.1 View exemplar Basepair signature: cWW-R-tSW-R-R History status: New id, 1 parent	8	10
43	HL_04124.1 View exemplar Basepair signature: cWW-cWS-R-R-R-R-R History status: New id, no parents tRNA D-loop (4)	9	9
44	HL_23455.1 View exemplar Basepair signature: cWW History status: New id, 1 parent Mini UNCG (4)	3	9
45	HL_68015.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, 1 parent Purine riboswitch (4)	7	9
46	HL_32751.1 View exemplar Basepair signature: cWW-cSW-R History status: New id, no parents	5	9
47	HL_52254.1 View exemplar Basepair signature: cWW-cWW-cSS-cSS-R History status: New id, 1 parent	10	8
48	HL_40871.1 View exemplar Basepair signature: cWW-cWH-tWH-R-R-R History status: New id, 1 parent	9	8
49	HL_69432.1 View exemplar Basepair signature: cWW-R-tSW-R History status: New id, 1 parent	6	8
50	HL_83191.1 View exemplar Basepair signature: cWW-R History status: New id, no parents	4	7
51	HL_87993.1 View exemplar Basepair signature: cWW-cWW-tSW-R History status: New id, no parents	7	7
52	HL_84417.1 View exemplar Basepair signature: cWW-cSW-R-R History status: New id, 1 parent	6	7
53	HL_26295.1 View exemplar Basepair signature: cWW-tSH-R-R-R History status: New id, 1 parent GNRA (1)	7	7
54	HL_12776.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: New id, 1 parent	10	7
55	HL_22130.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R History status: New id, no parents	10	7
56	HL_25023.1 View exemplar Basepair signature: cWW-cWH-R-R-R-R History status: New id, no parents	9	7
57	HL_27052.1 View exemplar Basepair signature: cWW-R-R History status: New id, 1 parent	5	7
58	HL_41768.1 View exemplar Basepair signature: cWW-cWS-cSH-R-R-R History status: New id, no parents tRNA D-loop (2)	9	6
59	HL_58385.1 View exemplar Basepair signature: cWW-R-cSW-R-cSH History status: New id, 1 parent	9	6
60	HL_61729.1 View exemplar Basepair signature: cWW-tWH-tHS-tWH-R-R-R History status: New id, 1 parent	10	6
61	HL_75243.1 View exemplar Basepair signature: cWW-R-tSH-R-R History status: New id, no parents Anticodon loop related (1) GNRA related (1)	8	6
62	HL_94809.1 View exemplar Basepair signature: cWW History status: New id, no parents	3	6
63	HL_31303.1 View exemplar Basepair signature: cWW-tSH-R-tHW-R-R History status: New id, no parents	9	6
64	HL_14932.1 View exemplar Basepair signature: cWW-tSH-R History status: New id, no parents GNRA related (1)	5	6
65	HL_23500.1 View exemplar Basepair signature: cWW-cWW-R-tSH-R-tSH-R-R History status: New id, no parents	13	6
66	HL_42514.1 View exemplar Basepair signature: cWW-cWS-R History status: New id, 2 parents tRNA D-loop (2)	5	6
67	HL_92806.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: New id, 1 parent Pseudoknot geometry (1)	9	6
68	HL_18683.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: New id, no parents	9	6
69	HL_74437.1 View exemplar Basepair signature: cWW-R History status: New id, 2 parents	4	6
70	HL_05923.1 View exemplar Basepair signature: cWW-tSH-R History status: New id, no parents UNCG variation (1)	5	5
71	HL_96456.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, 1 parent GNRA (1)	6	5
72	HL_08178.1 View exemplar Basepair signature: cWW-R-cSS-R-R History status: New id, no parents	8	5
73	HL_35608.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R History status: New id, 1 parent	9	5
74	HL_47284.1 View exemplar Basepair signature: cWW-cWW-cWS-R-R History status: New id, 1 parent	8	5
75	HL_95414.1 View exemplar Basepair signature: cWW-cWW History status: New id, 1 parent	5	5
76	HL_71221.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R-R-R-R-R History status: New id, no parents	17	5
77	HL_40664.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	5
78	HL_21557.1 View exemplar Basepair signature: cWW-cWS-tSW History status: New id, 1 parent	6	5
79	HL_97846.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R History status: New id, 1 parent	8	5
80	HL_60814.1 View exemplar Basepair signature: cWW-R History status: New id, no parents	4	5
81	HL_15846.1 View exemplar Basepair signature: cWW-R-R History status: New id, 1 parent	5	5
82	HL_50248.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, no parents	8	4
83	HL_35624.1 View exemplar Basepair signature: cWW-cWS-R-R-R History status: New id, no parents tRNA D-loop (3)	7	4
84	HL_61817.1 View exemplar Basepair signature: cWW-R-R History status: New id, 1 parent	5	4
85	HL_72793.1 View exemplar Basepair signature: cWW History status: New id, 1 parent	3	4
86	HL_91546.1 View exemplar Basepair signature: cWW-tWH-R-R-R-R History status: New id, 1 parent	8	4
87	HL_12086.1 View exemplar Basepair signature: cWW-R History status: New id, 1 parent	4	4
88	HL_95265.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R History status: New id, 1 parent Anticodon loop related (2)	8	4
89	HL_40187.1 View exemplar Basepair signature: cWW-R History status: New id, 2 parents tRNA anticodon loop with synthetase (1)	4	4
90	HL_09288.1 View exemplar Basepair signature: cWW-cWW-R History status: New id, no parents	6	4
91	HL_21095.1 View exemplar Basepair signature: cWW-R-R-tWH-R-R-R-R History status: New id, 1 parent T-loop with unstacked turn (1)	10	4
92	HL_15414.1 View exemplar Basepair signature: cWW-R-cWS-R History status: New id, no parents	7	4
93	HL_60809.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R History status: New id, 1 parent Pseudoknot geometry (1)	9	4
94	HL_56776.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: New id, 1 parent	9	4
95	HL_48953.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R History status: New id, no parents Pseudoknot geometry (1)	15	4
96	HL_09582.1 View exemplar Basepair signature: cWW-cWW-R-R-R History status: New id, no parents tRNA anticodon loop with synthetase (2)	8	4
97	HL_07278.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: New id, 1 parent	11	4
98	HL_61425.1 View exemplar Basepair signature: cWW-R-cSH History status: New id, 1 parent	6	4
99	HL_74373.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, 1 parent tRNA D-loop (1)	6	4
100	HL_16278.1 View exemplar Basepair signature: cWW History status: New id, no parents	3	4
101	HL_57276.1 View exemplar Basepair signature: cWW-tSS-R-R-R History status: New id, no parents	7	4
102	HL_87601.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: New id, no parents	11	4
103	HL_96334.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	4
104	HL_25553.1 View exemplar Basepair signature: cWW-R-R-R-cSH-R-R History status: New id, 1 parent Pseudoknot with intercalation (2)	10	3
105	HL_79069.1 View exemplar Basepair signature: cWW-tSH-tHW-tHW-R-R-R History status: New id, no parents	11	3
106	HL_61580.1 View exemplar Basepair signature: cWW-cSS-cSH History status: New id, 1 parent	7	3
107	HL_30879.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, 2 parents	6	3
108	HL_14875.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R History status: New id, 1 parent	10	3
109	HL_42245.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R History status: New id, no parents	12	3
110	HL_55829.1 View exemplar Basepair signature: cWW-R-R-R-tWH-R-R-R History status: New id, 1 parent	10	3
111	HL_59077.1 View exemplar Basepair signature: cWW-cWW-R-cWS-R-R History status: New id, 2 parents	10	3
112	HL_70644.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, 1 parent Pseudoknot geometry (1)	6	3
113	HL_88741.1 View exemplar Basepair signature: cWW-cWW-R-R-tWH-R-tWH-R-R-R History status: New id, 1 parent	14	3
114	HL_98833.4 View exemplar Basepair signature: cWW-cWS-R-R-R-R History status: Updated, 1 parent tRNA D-loop (3)	8	3
115	HL_18012.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, 1 parent	6	3
116	HL_26016.1 View exemplar Basepair signature: cWW-R-tSH-R History status: New id, 1 parent Mini UNCG (1)	6	3
117	HL_81868.1 View exemplar Basepair signature: cWW-tSW-R History status: New id, 1 parent	5	3
118	HL_95694.1 View exemplar Basepair signature: cWW-cWS-R History status: New id, 1 parent UNCG related (2)	5	3
119	HL_71441.1 View exemplar Basepair signature: cWW-cWW-R-R-R History status: New id, no parents	8	3
120	HL_43410.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, no parents Pseudoknot geometry (1)	8	3
121	HL_03897.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, 1 parent GNRA (1)	6	3
122	HL_49089.1 View exemplar Basepair signature: cWW-cWW-R-R-R History status: New id, no parents	8	3
123	HL_82040.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	3
124	HL_30125.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R-R-R-R-R History status: New id, 1 parent	13	3
125	HL_13324.1 View exemplar Basepair signature: cWW-cWW-tSH-R History status: New id, 1 parent tRNA anticodon loop with synthetase (1)	7	3
126	HL_22131.1 View exemplar Basepair signature: cWW-cWW-R-R History status: New id, no parents	7	3
127	HL_30483.1 View exemplar Basepair signature: cWW-cWS-R History status: New id, no parents	5	3
128	HL_98228.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	3
129	HL_93692.1 View exemplar Basepair signature: cWW-tSW-R History status: New id, no parents	5	3
130	HL_07891.1 View exemplar Basepair signature: cWW-cWW-tSH-R-R History status: New id, no parents	8	2
131	HL_11386.1 View exemplar Basepair signature: cWW-L-cWW-R-R History status: New id, no parents	8	2
132	HL_22971.1 View exemplar Basepair signature: cWW-cWW-tSH-R-R-R History status: New id, no parents	9	2
133	HL_16924.1 View exemplar Basepair signature: cWW-cWS-R-R History status: New id, no parents	6	2
134	HL_46023.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, 1 parent	5	2
135	HL_04272.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	2
136	HL_39765.1 View exemplar Basepair signature: cWW-R-R History status: New id, 1 parent	5	2
137	HL_50880.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: New id, no parents	10	2
138	HL_84285.1 View exemplar Basepair signature: cWW-R-tSW-R History status: New id, 1 parent	6	2
139	HL_05941.1 View exemplar Basepair signature: cWW-cWH-R History status: New id, 1 parent	5	2
140	HL_25575.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, 1 parent	6	2
141	HL_98577.1 View exemplar Basepair signature: cWW-R-R-tHW-R-R-R-R-R-R-R History status: Exact match	13	2
142	HL_14879.1 View exemplar Basepair signature: cWW-tSW-R History status: New id, 1 parent Fab BL3-6 binding hairpin with tSW (2)	5	2
143	HL_08566.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, no parents	7	2
144	HL_70740.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: New id, 1 parent	11	2
145	HL_80492.3 View exemplar Basepair signature: cWW-tSH-cWS-cWS-R History status: Updated, 1 parent	8	2
146	HL_04673.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	2
147	HL_52248.1 View exemplar Basepair signature: cWW-tSH-R History status: New id, 1 parent	5	2
148	HL_62545.1 View exemplar Basepair signature: cWW History status: New id, no parents	3	2
149	HL_00232.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	2
150	HL_68621.1 View exemplar Basepair signature: cWW-cWW-R-R History status: New id, no parents	8	2
151	HL_08810.1 View exemplar Basepair signature: cWW-tSW-R History status: New id, no parents	5	2
152	HL_59580.1 View exemplar Basepair signature: cWW-R-R-tWH-R-R-R-R History status: New id, no parents	11	2
153	HL_80634.1 View exemplar Basepair signature: cWW-cWW-R History status: New id, no parents	6	2
154	HL_04698.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: New id, no parents	9	2
155	HL_12525.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	2
156	HL_29212.1 View exemplar Basepair signature: cWW-cSH-R-R History status: New id, no parents	7	2
157	HL_00694.1 View exemplar Basepair signature: cWW-L-cWW-R-R-R-R-R History status: New id, 1 parent	11	2
158	HL_32608.1 View exemplar Basepair signature: cWW-cWW-R-R History status: New id, no parents	7	2
159	HL_77203.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	2
160	HL_97425.1 View exemplar Basepair signature: cWW-R-cSH-R History status: New id, no parents	6	2
161	HL_48629.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	2
162	HL_29344.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: New id, no parents	9	2
163	HL_56547.1 View exemplar Basepair signature: cWW-R-tSW-cSS-R History status: New id, no parents	8	2
164	HL_68897.1 View exemplar Basepair signature: cWW-tHH-tSS-tWW-R-R-R-R-R History status: New id, no parents	12	2
165	HL_89594.1 View exemplar Basepair signature: cWW History status: New id, 1 parent Mini UNCG (1)	3	2
166	HL_09322.1 View exemplar Basepair signature: cWW-tSH-cWS-tSW-R-R-R History status: New id, 1 parent tRNA D-loop (1)	11	2
167	HL_26177.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, no parents Mini UNCG with extended bulge (1)	7	2
168	HL_04973.1 View exemplar Basepair signature: cWW-R-tSH-R History status: New id, 1 parent	7	2
169	HL_12767.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R History status: New id, 1 parent	15	2
170	HL_07149.1 View exemplar Basepair signature: cWW-tSH-tHS-R-R-tSS-R-R-R-R-R-R-R-R-R-R History status: New id, no parents	19	2
171	HL_93109.1 View exemplar Basepair signature: cWW-R-R History status: New id, 1 parent	5	2
172	HL_95969.2 View exemplar Basepair signature: cWW-R-R-R-R History status: Updated, 1 parent	7	2
173	HL_24456.1 View exemplar Basepair signature: cWW-cSW-tSH-R History status: New id, no parents	7	2
174	HL_38130.2 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: Exact match	11	2
175	HL_13019.1 View exemplar Basepair signature: cWW-tSH-R-R-R History status: New id, 1 parent	7	2
176	HL_15983.1 View exemplar Basepair signature: cWW-R History status: New id, no parents	4	2
177	HL_34388.1 View exemplar Basepair signature: cWW-cWW-R-tWH-R-R-R-R-R History status: New id, 1 parent	12	2
178	HL_43883.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, no parents	7	2
179	HL_38453.1 View exemplar Basepair signature: cWW-cWW-cWW-R-R-R-R-R-R History status: New id, 1 parent	13	2
180	HL_49210.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match Pseudoknot (1)	7	2
181	HL_05765.1 View exemplar Basepair signature: cWW-tWH-R-R-R History status: New id, 1 parent GNRA-like with tWH (1)	7	2
182	HL_39436.1 View exemplar Basepair signature: cWW-cWW-tSH-tHS-R-R-R-R-R-R-cWW-R-R-R-R-R History status: New id, no parents	22	2
183	HL_49747.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R-R-R-R History status: New id, no parents	12	2
184	HL_72226.1 View exemplar Basepair signature: cWW History status: New id, 1 parent	3	2
185	HL_55684.2 View exemplar Basepair signature: cWW-tSH-R-R History status: Updated, 1 parent	6	2
186	HL_01938.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-cSH History status: New id, 1 parent	10	1
187	HL_16817.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: New id, no parents	9	1
188	HL_35255.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: New id, no parents	9	1
189	HL_45397.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	1
190	HL_57735.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	1
191	HL_98240.1 View exemplar Basepair signature: cWW-tSS-R-R History status: New id, no parents	7	1
192	HL_27488.1 View exemplar Basepair signature: cWW-tWH-R-R-R History status: New id, no parents	7	1
193	HL_39469.1 View exemplar Basepair signature: cWW-cSW-R-R-cWW History status: New id, no parents	9	1
194	HL_93910.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: New id, no parents	9	1
195	HL_14293.1 View exemplar Basepair signature: cWW-L-R-cWW-R-tSH-tWW-R-cHW-R History status: New id, no parents	16	1
196	HL_66907.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: New id, no parents	11	1
197	HL_75236.1 View exemplar Basepair signature: cWW-tSH-R-R-R-R History status: New id, no parents	8	1
198	HL_03127.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R History status: New id, no parents	9	1
199	HL_25572.1 View exemplar Basepair signature: cWW-R-cSW-R-R-R-R-R-R-R History status: New id, 1 parent	13	1
200	HL_70597.1 View exemplar Basepair signature: cWW-R History status: New id, no parents	4	1
201	HL_90862.1 View exemplar Basepair signature: cWW-tSH-tHS-tSS-R-R-R-cWW-R-R-R-R-R History status: New id, no parents	18	1
202	HL_98415.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	1
203	HL_11415.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	1
204	HL_20432.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	1
205	HL_27648.1 View exemplar Basepair signature: cWW-cSH-R-R History status: New id, no parents	7	1
206	HL_72389.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: Exact match	9	1
207	HL_94092.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, no parents	8	1
208	HL_31108.1 View exemplar Basepair signature: cWW-R History status: New id, no parents	4	1
209	HL_67264.1 View exemplar Basepair signature: cWW-cSW-R-R-R-R History status: New id, no parents	8	1
210	HL_88357.1 View exemplar Basepair signature: cWW-tWH-R-R History status: New id, no parents	6	1
211	HL_96535.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents	5	1
212	HL_17244.1 View exemplar Basepair signature: cWW-tWH-R-tWW-R-R-R-R History status: New id, no parents	11	1
213	HL_46507.1 View exemplar Basepair signature: cWW-tSH-R-R History status: New id, no parents	6	1
214	HL_79992.1 View exemplar Basepair signature: cWW-tWH-R-R-R-R-R-R History status: New id, no parents	10	1
215	HL_91347.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, no parents	8	1
216	HL_04288.1 View exemplar Basepair signature: cWW History status: New id, no parents	3	1
217	HL_20630.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	1
218	HL_28244.1 View exemplar Basepair signature: cWW History status: New id, no parents	3	1
219	HL_39776.1 View exemplar Basepair signature: cWW-R-bif-R-R-R-R-R-R-R-R-R-R-R History status: New id, no parents	16	1
220	HL_51972.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	1
221	HL_06062.1 View exemplar Basepair signature: cWW-R-cWH-R-R-R History status: New id, no parents	8	1
222	HL_23479.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	1
223	HL_42345.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
224	HL_75842.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R History status: New id, no parents	28	1
225	HL_97014.1 View exemplar Basepair signature: cWW-tSH-cWS-cWS-R-R-R History status: New id, no parents	10	1
226	HL_17554.1 View exemplar Basepair signature: cWW-R-cHH-tSW-tSH-R History status: New id, no parents	10	1
227	HL_25712.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	1
228	HL_35996.1 View exemplar Basepair signature: cWW-cSW-R-R-R History status: New id, no parents	7	1
229	HL_59511.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R History status: New id, no parents	13	1
230	HL_20963.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R History status: New id, no parents	15	1
231	HL_29048.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R History status: New id, no parents	13	1
232	HL_39911.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R History status: New id, no parents	10	1
233	HL_85081.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, no parents	8	1
234	HL_31461.1 View exemplar Basepair signature: cWW-cWS-R History status: New id, no parents	6	1
235	HL_76276.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: New id, no parents	10	1
236	HL_88830.1 View exemplar Basepair signature: cWW-tSW-cWH-cHW-cHW-cWH-cHW-cWH-R-cWH-cWH-cWH-cWH History status: New id, no parents	16	1
237	HL_97104.1 View exemplar Basepair signature: cWW-cSW-R-R-R-R-R-R-R-R-R History status: New id, no parents	13	1
238	HL_03478.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, 1 parent	8	1
239	HL_17687.1 View exemplar Basepair signature: cWW-cWW-R-tWH-R-R-R-R History status: New id, no parents	11	1
240	HL_25783.1 View exemplar Basepair signature: cWW-cWW-L-R-R-cWW-R-R-R-R-R-R-R-R-R-R-R-R-R History status: New id, no parents	23	1
241	HL_71145.1 View exemplar Basepair signature: cWW-tSH-cWS-tSW-R-R-R-R-R History status: New id, 1 parent tRNA D-loop (1)	13	1
242	HL_92745.1 View exemplar Basepair signature: cWW-tSH-R-R History status: New id, no parents	6	1
243	HL_98861.1 View exemplar Basepair signature: cWW-R History status: New id, no parents	4	1
244	HL_21067.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	1
245	HL_73142.1 View exemplar Basepair signature: cWW-tHS-R-R History status: New id, no parents	6	1
246	HL_85145.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, no parents	8	1
247	HL_06941.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: New id, no parents	10	1
248	HL_15316.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R History status: New id, no parents	10	1
249	HL_23944.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: New id, no parents	11	1
250	HL_42716.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: New id, no parents	9	1
251	HL_03511.1 View exemplar Basepair signature: cWW-R-R-R-tWH-R-R History status: New id, no parents	10	1
252	HL_37526.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	1
253	HL_60168.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	1
254	HL_04708.1 View exemplar Basepair signature: cWW-cWW-cSH-R-R History status: New id, no parents	9	1
255	HL_12635.1 View exemplar Basepair signature: cWW-R-R-tSH-R-R History status: New id, no parents	9	1
256	HL_52914.1 View exemplar Basepair signature: cWW-R-tSH-R-R History status: New id, no parents	8	1
257	HL_62809.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R History status: New id, no parents	30	1
258	HL_73228.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R History status: New id, no parents	11	1
259	HL_85937.1 View exemplar Basepair signature: cWW-cWW-R-tSH-tWH-R-tHW-R-R-R-R History status: New id, no parents	16	1
260	HL_00849.1 View exemplar Basepair signature: cWW-L-R-R-L-L-cWW-R-R-R-R-R-R-R-R-R-R History status: New id, no parents	20	1
261	HL_24133.1 View exemplar Basepair signature: cWW-cWS-R-R History status: New id, 1 parent tRNA D-loop (1)	6	1
262	HL_43172.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, no parents	7	1
263	HL_77438.1 View exemplar Basepair signature: cWW-R-R-tWH-R-R-R History status: New id, no parents	9	1
264	HL_97766.1 View exemplar Basepair signature: cWW-cWH-R-R-R-R-R-R-R History status: New id, no parents	12	1
265	HL_03642.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: New id, no parents	10	1
266	HL_18595.1 View exemplar Basepair signature: cWW-L-R-R-cWW-R-cWW-cWW-R-R-R History status: New id, no parents	16	1
267	HL_37955.1 View exemplar Basepair signature: cWW-cWW-cWW-L-R-cWW-cWW-R-R-R-R-R-R-R-R-R-R-R History status: New id, no parents	24	1
268	HL_48787.1 View exemplar Basepair signature: cWW-cWW-tWW-cWH-cSH-cSS-L-L-tHS-R-R-R-cSH-L-cWW-R-R-R-R-R-R-tSH-R-R-R-R History status: New id, no parents	34	1
269	HL_71320.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	1
270	HL_81880.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R-R History status: New id, no parents	11	1
271	HL_92991.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, no parents	7	1
272	HL_30008.1 View exemplar Basepair signature: cWW-R-R History status: Exact match	5	1
273	HL_54411.1 View exemplar Basepair signature: cWW-cWH-R-R-R-R-R History status: New id, no parents	9	1
274	HL_63203.1 View exemplar Basepair signature: cWW-tWW-R-R-R History status: New id, no parents Pseudoknot (1)	7	1
275	HL_86393.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: New id, no parents	11	1
276	HL_01005.1 View exemplar Basepair signature: cWW-cWH-R-cSH History status: New id, no parents	6	1
277	HL_15553.1 View exemplar Basepair signature: cWW-bif-R-cWW-R History status: New id, no parents	7	1
278	HL_24427.1 View exemplar Basepair signature: cWW-cWW-cWW-bif-cSW-R-R-R-R History status: New id, no parents	14	1
279	HL_33707.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, no parents	8	1
280	HL_43289.1 View exemplar Basepair signature: cWW-R-cSH-R-R-R-R-R-R History status: New id, no parents	12	1
281	HL_77692.1 View exemplar Basepair signature: cWW-tSH-cWS-cSH-R-R History status: Exact match	10	1
282	HL_89899.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, no parents	7	1
283	HL_09397.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, no parents	7	1
284	HL_81973.1 View exemplar Basepair signature: cWW History status: New id, no parents	3	1
285	HL_05157.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	1
286	HL_21773.1 View exemplar Basepair signature: cWW-cWW-cWH-R History status: New id, no parents	7	1
287	HL_30063.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R History status: New id, 1 parent	11	1
288	HL_41200.1 View exemplar Basepair signature: cWW-R-bif-cWH-tSH-tWH-R-tHW-tHH-R-R History status: New id, no parents	17	1
289	HL_63819.1 View exemplar Basepair signature: cWW-cSH-bif-R-R-R-R-R-tSH-R-R-R-R-R-R-R History status: New id, no parents	19	1
290	HL_73972.1 View exemplar Basepair signature: cWW-bif-tSW History status: Exact match	6	1
291	HL_87051.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, no parents	8	1
292	HL_01158.1 View exemplar Basepair signature: cWW-R History status: New id, no parents	4	1
293	HL_07245.1 View exemplar Basepair signature: cWW-R-R-R-R-cSS-R-R-R History status: New id, no parents	12	1
294	HL_33971.1 View exemplar Basepair signature: cWW-R History status: New id, no parents	4	1
295	HL_97865.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R-R History status: New id, no parents	10	1
296	HL_18706.1 View exemplar Basepair signature: cWW History status: New id, no parents	3	1
297	HL_26476.1 View exemplar Basepair signature: cWW-cSW-R-R-R-R-R-R-R-R History status: New id, no parents	12	1
298	HL_72137.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: New id, no parents	11	1
299	HL_93522.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	1
300	HL_41333.1 View exemplar Basepair signature: cWW-bif-cWW-cWW-R-R-R-R-R-R-R-R-R-R History status: New id, no parents	17	1
301	HL_55450.1 View exemplar Basepair signature: cWW-R-R-R History status: Exact match	6	1
302	HL_65299.1 View exemplar Basepair signature: cWW-R-R History status: New id, no parents	5	1
303	HL_74049.1 View exemplar Basepair signature: cWW-cWW-R-cWS-R-R-R-R-R History status: New id, no parents	13	1
304	HL_87223.1 View exemplar Basepair signature: cWW-R-R-R-R History status: Exact match	7	1
305	HL_96239.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R History status: New id, no parents	12	1
306	HL_24567.1 View exemplar Basepair signature: cWW-tSW-R History status: New id, no parents	5	1
307	HL_57217.1 View exemplar Basepair signature: cWW-R-R-R-cSH History status: Exact match	8	1
308	HL_78306.1 View exemplar Basepair signature: cWW-R-R-R-R-R-cWH-R-R-R-R-R-R-R-R History status: New id, no parents	18	1
309	HL_90107.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, no parents	8	1
310	HL_11142.1 View exemplar Basepair signature: cWW-tWW-R-R-R-R-R-R History status: New id, no parents	10	1
311	HL_18721.1 View exemplar Basepair signature: cWW-cWW-R-cSW-R-cSH History status: New id, no parents	11	1
312	HL_72191.1 View exemplar Basepair signature: cWW-bif-R-R-R-R History status: New id, no parents	8	1
313	HL_93647.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	1
314	HL_41530.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, no parents	7	1
315	HL_55579.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R History status: New id, no parents	9	1
316	HL_65557.1 View exemplar Basepair signature: cWW-R-cWW-R-R-R-R-R-cWH History status: New id, no parents	13	1
317	HL_87383.1 View exemplar Basepair signature: cWW-tWH-R-tSH-R History status: New id, no parents	8	1
318	HL_96296.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R History status: New id, no parents	13	1
319	HL_01413.1 View exemplar Basepair signature: cWW-cWW History status: New id, no parents	5	1
320	HL_07386.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, no parents	7	1
321	HL_35165.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, no parents	7	1
322	HL_44914.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	1
323	HL_70531.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, no parents	8	1
324	HL_78422.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R History status: Exact match Pseudoknot geometry (1)	10	1
325	HL_03996.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	1
326	HL_11362.1 View exemplar Basepair signature: cWW-R-R-R-R History status: New id, no parents	7	1
327	HL_19791.1 View exemplar Basepair signature: cWW-cWW-R-R-R-R History status: New id, no parents	9	1
328	HL_61454.1 View exemplar Basepair signature: cWW History status: New id, no parents	3	1
329	HL_82887.1 View exemplar Basepair signature: cWW-R-R-R-R-R History status: New id, no parents	8	1
330	HL_13475.1 View exemplar Basepair signature: cWW-R-tSW-R-R History status: New id, no parents	8	1
331	HL_22286.1 View exemplar Basepair signature: cWW-cWH History status: New id, no parents	4	1
332	HL_65622.1 View exemplar Basepair signature: cWW-R-R-R History status: New id, no parents	6	1

Coloring options:
Nucleotide numbers

New id, no parents 243; New id, 1 parent 119; Exact match 37; New id, 2 parents 10; Updated, 1 parent 5;

Hairpin Loop Motif Atlas Release 2.0 Download CSV JSON annotations

Hairpin Loop Motif Atlas Release 2.0

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