Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V64_0011/AA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4V64_0021/AA/83:86No text annotation
Not in a motif group
HL_4V64_0031/AA/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_4V64_0041/AA/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_4V64_0051/AA/207:212UNCG
Not in a motif group
homologous
HL_5J7L_005
HL_03562.2
HL_4V64_0061/AA/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_4V64_0071/AA/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_4V64_0081/AA/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_4V64_0091/AA/342:347UNCG
Not in a motif group
homologous
HL_5J7L_009
HL_03562.2
HL_4V64_0101/AA/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_4V64_0111/AA/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_4V64_0121/AA/462:470No text annotation
Not in a motif group
HL_4V64_0131/AA/522:527No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_4V64_0141/AA/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_4V64_0151/AA/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_4V64_0161/AA/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_4V64_0171/AA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4V64_0181/AA/840:846No text annotation
Not in a motif group
HL_4V64_0191/AA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_4V64_0201/AA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_4V64_0211/AA/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_4V64_0221/AA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_4V64_0231/AA/1028:1033No text annotation
Not in a motif group
geometric
HL_4YAZ_004
HL_56691.2
HL_4V64_0241/AA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_4V64_0251/AA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V64_0261/AA/1134:1140No text annotation
Not in a motif group
homologous
HL_4LFB_026
HL_03562.2
HL_4V64_0271/AA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_4V64_0281/AA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_4V64_0291/AA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4V64_0301/AA/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_4V64_0311/AA/1449:1454UNCG
Not in a motif group
homologous
HL_4LFB_031
HL_03562.2
HL_4V64_0321/AA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V64_0331/BA/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_4V64_0341/BA/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2
HL_4V64_0351/BB/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4V64_0361/BB/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_4V64_0371/BB/123:128No text annotation
Not in a motif group
homologous
HL_5J7L_136
HL_75407.1
HL_4V64_0381/BB/137:142No text annotation
Not in a motif group
HL_4V64_0391/BB/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_4V64_0401/BB/194:201No text annotation
Not in a motif group
geometric
HL_5J7L_139
HL_06192.2
HL_4V64_0411/BB/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_4V64_0421/BB/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_4V64_0431/BB/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_4V64_0441/BB/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_4V64_0451/BB/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_4V64_0461/BB/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_4V64_0471/BB/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_4V64_0481/BB/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.1
HL_4V64_0491/BB/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.1
HL_4V64_0501/BB/543:550No text annotation
Not in a motif group
homologous
HL_7RQB_017
NA
HL_4V64_0511/BB/566:575T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_150
HL_89380.2
HL_4V64_0521/BB/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_4V64_0531/BB/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_4V64_0541/BB/641:647No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_42097.1
HL_4V64_0551/BB/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_4V64_0561/BB/744:753No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_4V64_0571/BB/779:785No text annotation
Not in a motif group
HL_4V64_0581/BB/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_4V64_0601/BB/955:962GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_42097.1
HL_4V64_0611/BB/978:985No text annotation
Not in a motif group
homologous
HL_7A0S_027
HL_64430.2
HL_4V64_0621/BB/1064:1074No text annotation
Not in a motif group
homologous
HL_6PRV_001
HL_07145.1
HL_4V64_0631/BB/1092:1099No text annotation
Not in a motif group
homologous
HL_6PRV_002
HL_84085.2
HL_4V64_0641/BB/1172:1177No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_4V64_0651/BB/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_4V64_0661/BB/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_4V64_0671/BB/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_4V64_0681/BB/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_4V64_0691/BB/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_4V64_0701/BB/1449:1462No text annotation
Not in a motif group
HL_4V64_0711/BB/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_4V64_0721/BB/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_4V64_0731/BB/1565:1568No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_38927.2
HL_4V64_0741/BB/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V64_0751/BB/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_4V64_0761/BB/1691:1696UNCG
Not in a motif group
geometric
HL_4LFB_011
HL_03562.2
HL_4V64_0771/BB/1728:1731No text annotation
Not in a motif group
HL_4V64_0781/BB/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4V64_0791/BB/1777:1787No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_4V64_0801/BB/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_4V64_0811/BB/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_42097.1
HL_4V64_0821/BB/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V64_0831/BB/1949:1957No text annotation
Not in a motif group
homologous
HL_4WF9_046
HL_51824.1
HL_4V64_0841/BB/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_4V64_0851/BB/2142:2149No text annotation
Not in a motif group
HL_4V64_0861/BB/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_4V64_0871/BB/2248:2256No text annotation
Not in a motif group
homologous
HL_5J7L_186
NA
HL_4V64_0881/BB/2264:2276No text annotation
Not in a motif group
homologous
HL_7A0S_053
HL_19870.6
HL_4V64_0891/BB/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_4V64_0901/BB/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_4V64_0911/BB/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_4V64_0921/BB/2374:2379GNRA
Not in a motif group
homologous
HL_4WF9_054
HL_42097.1
HL_4V64_0931/BB/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_30784.2
HL_4V64_0941/BB/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_4V64_0951/BB/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_4V64_0961/BB/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V64_0971/BB/2594:2599GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_42097.1
HL_4V64_0981/BB/2658:2663GNRA
Not in a motif group
geometric
HL_3P22_001
HL_42097.1
HL_4V64_0991/BB/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_4V64_1001/BB/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_4V64_1011/BB/2796:2800No text annotation
Not in a motif group
geometric
HL_5J7L_172
HL_38927.2
HL_4V64_1021/BB/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_4V64_1031/BB/2856:2861No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_42097.1
HL_4V64_1041/CA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4V64_1051/CA/83:86No text annotation
Not in a motif group
geometric
HL_4V88_192
HL_53837.1
HL_4V64_1061/CA/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_4V64_1071/CA/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_4V64_1081/CA/207:212UNCG
Not in a motif group
homologous
HL_5J7L_005
HL_03562.2
HL_4V64_1091/CA/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_4V64_1101/CA/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_4V64_1111/CA/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_4V64_1121/CA/342:347UNCG
Not in a motif group
homologous
HL_5J7L_009
HL_03562.2
HL_4V64_1131/CA/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_4V64_1141/CA/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_4V64_1151/CA/462:470No text annotation
Not in a motif group
HL_4V64_1161/CA/522:527No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_4V64_1171/CA/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_4V64_1181/CA/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_4V64_1191/CA/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_4V64_1201/CA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4V64_1211/CA/840:846No text annotation
Not in a motif group
HL_4V64_1221/CA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_4V64_1231/CA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_4V64_1241/CA/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_4V64_1251/CA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_4V64_1271/CA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_4V64_1281/CA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V64_1291/CA/1134:1140No text annotation
Not in a motif group
homologous
HL_4LFB_026
HL_03562.2
HL_4V64_1301/CA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_4V64_1311/CA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_4V64_1321/CA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4V64_1331/CA/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_4V64_1341/CA/1449:1454UNCG
Not in a motif group
homologous
HL_4LFB_031
HL_03562.2
HL_4V64_1351/CA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V64_1361/DA/38:44No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.2
HL_4V64_1371/DA/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2
HL_4V64_1381/DB/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4V64_1391/DB/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_4V64_1401/DB/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_4V64_1411/DB/137:142No text annotation
Not in a motif group
HL_4V64_1421/DB/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_4V64_1431/DB/194:201No text annotation
Not in a motif group
homologous
HL_5J7L_139
HL_06192.2
HL_4V64_1441/DB/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_4V64_1451/DB/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_4V64_1461/DB/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_4V64_1471/DB/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_4V64_1481/DB/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_4V64_1491/DB/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_4V64_1501/DB/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_4V64_1511/DB/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.1
HL_4V64_1521/DB/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.1
HL_4V64_1531/DB/543:550No text annotation
Not in a motif group
HL_4V64_1541/DB/566:575T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_150
HL_89380.2
HL_4V64_1551/DB/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_4V64_1561/DB/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_4V64_1571/DB/641:647No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_42097.1
HL_4V64_1581/DB/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_4V64_1591/DB/744:753No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_4V64_1601/DB/779:785No text annotation
Not in a motif group
homologous
HL_4WF9_024
HL_74322.1
HL_4V64_1611/DB/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_4V64_1631/DB/955:962GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_42097.1
HL_4V64_1641/DB/978:985No text annotation
Not in a motif group
homologous
HL_7A0S_027
HL_64430.2
HL_4V64_1651/DB/1064:1074No text annotation
Not in a motif group
homologous
HL_6PRV_001
HL_07145.1
HL_4V64_1661/DB/1092:1099No text annotation
Not in a motif group
homologous
HL_6PRV_002
HL_84085.2
HL_4V64_1671/DB/1172:1177No text annotation
Not in a motif group
HL_4V64_1681/DB/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_4V64_1691/DB/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_4V64_1701/DB/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_4V64_1711/DB/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_4V64_1721/DB/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_4V64_1731/DB/1449:1462No text annotation
Not in a motif group
HL_4V64_1741/DB/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_4V64_1751/DB/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_4V64_1761/DB/1565:1568No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_38927.2
HL_4V64_1771/DB/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V64_1781/DB/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_4V64_1791/DB/1691:1696UNCG
Not in a motif group
homologous
HL_5J7L_175
HL_03562.2
HL_4V64_1801/DB/1728:1731No text annotation
Not in a motif group
HL_4V64_1811/DB/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4V64_1821/DB/1777:1787No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_4V64_1831/DB/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_4V64_1841/DB/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_42097.1
HL_4V64_1851/DB/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V64_1861/DB/1949:1957No text annotation
Not in a motif group
homologous
HL_4WF9_046
HL_51824.1
HL_4V64_1871/DB/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_4V64_1881/DB/2142:2149No text annotation
Not in a motif group
HL_4V64_1891/DB/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_4V64_1901/DB/2248:2256No text annotation
Not in a motif group
homologous
HL_5J7L_186
NA
HL_4V64_1911/DB/2264:2276No text annotation
Not in a motif group
homologous
HL_7A0S_053
HL_19870.6
HL_4V64_1921/DB/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_4V64_1931/DB/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_4V64_1941/DB/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_4V64_1951/DB/2374:2379GNRA
Not in a motif group
homologous
HL_4WF9_054
HL_42097.1
HL_4V64_1961/DB/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_30784.2
HL_4V64_1971/DB/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_4V64_1981/DB/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_4V64_1991/DB/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V64_2001/DB/2594:2599GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_42097.1
HL_4V64_2011/DB/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_42097.1
HL_4V64_2021/DB/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_4V64_2031/DB/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_4V64_2041/DB/2796:2800No text annotation
Not in a motif group
geometric
HL_5J7L_172
HL_38927.2
HL_4V64_2051/DB/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_4V64_2061/DB/2856:2861No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_42097.1

Problematic loops

#loop idProblemSequence
HL_4V64_059No text annotation
HL_4V64_126No text annotation
HL_4V64_162No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V64_0011/AA/30:32,
1/AA/552:553
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_00225.2
IL_4V64_0021/AA/44:45,
1/AA/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_4V64_0031/AA/47:52,
1/AA/359:361
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_11178.1
IL_4V64_0041/AA/54:56,
1/AA/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_4V64_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_4V64_0061/AA/67:69,
1/AA/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_4V64_0071/AA/70:73,
1/AA/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_4V64_0081/AA/75:76,
1/AA/93:95
No text annotation
Not in a motif group
IL_4V64_0091/AA/128:131,
1/AA/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_4V64_0101/AA/132:136,
1/AA/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_4V64_0111/AA/144:146,
1/AA/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_4V64_0121/AA/147:153,
1/AA/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_4V64_0131/AA/203:206,
1/AA/213:214
Minor groove platform
Not in a motif group
geometric
IL_3MXH_005
IL_15052.1
IL_4V64_0141/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_4V64_0151/AA/249:252,
1/AA/274:275
No text annotation
Not in a motif group
homologous
IL_5J7L_015
IL_48100.2
IL_4V64_0161/AA/292:293,
1/AA/304:308
C-loop
Not in a motif group
homologous
IL_6CZR_125
IL_37712.2
IL_4V64_0171/AA/367:369,
1/AA/392:393
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.13
IL_4V64_0181/AA/371:375,
1/AA/389:390
C-loop
Not in a motif group
homologous
IL_4LFB_015
IL_75255.1
IL_4V64_0191/AA/375:376,
1/AA/387:389
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_4V64_0201/AA/409:416,
1/AA/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_4V64_0211/AA/440:442,
1/AA/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_4V64_0221/AA/446:450,
1/AA/483:488
tSH-tHW-tWW
Not in a motif group
geometric
IL_5J7L_022
IL_88269.3
IL_4V64_0231/AA/450:454,
1/AA/479:483
No text annotation
Not in a motif group
IL_4V64_0241/AA/454:455,
1/AA/477:479
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_4V64_0251/AA/458:459,
1/AA/472:474
Single stack bend
Not in a motif group
geometric
IL_4V83_236
IL_76488.2
IL_4V64_0261/AA/460:462,
1/AA/470:471
No text annotation
Not in a motif group
IL_4V64_0271/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_4V64_0281/AA/515:521,
1/AA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V64_0291/AA/569:575,
1/AA/880:881
No text annotation
Not in a motif group
homologous
IL_5J7L_026
IL_69996.1
IL_4V64_0301/AA/580:584,
1/AA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_4V64_0311/AA/594:596,
1/AA/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_4V64_0321/AA/597:598,
1/AA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_4V64_0331/AA/605:612,
1/AA/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_4V64_0341/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_50694.2
IL_4V64_0351/AA/658:659,
1/AA/746:748
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_4V64_0361/AA/662:666,
1/AA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_4V64_0371/AA/673:678,
1/AA/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_4V64_0381/AA/684:688,
1/AA/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_4V64_0391/AA/774:778,
1/AA/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_4V64_0401/AA/779:783,
1/AA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_4V64_0411/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_4V64_0421/AA/922:923,
1/AA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.2
IL_4V64_0431/AA/925:927,
1/AA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.2
IL_4V64_0441/AA/933:935,
1/AA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_4V64_0451/AA/953:954,
1/AA/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.2
IL_4V64_0461/AA/993:997,
1/AA/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_5J7L_043
IL_47078.1
IL_4V64_0471/AA/998:999,
1/AA/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_4V64_0481/AA/1048:1050,
1/AA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_4V64_0491/AA/1052:1056,
1/AA/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_4V64_0501/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_4V64_0511/AA/1060:1061,
1/AA/1195:1197
Single bulged A
Not in a motif group
homologous
IL_5J7L_049
IL_37497.2
IL_4V64_0521/AA/1061:1063,
1/AA/1193:1195
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_95997.1
IL_4V64_0531/AA/1124:1128,
1/AA/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_4V64_0541/AA/1129:1132,
1/AA/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_4V64_0551/AA/1158:1161,
1/AA/1175:1181
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_4V64_0561/AA/1247:1253,
1/AA/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_4V64_0571/AA/1255:1258,
1/AA/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_4V64_0581/AA/1259:1263,
1/AA/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_4V64_0591/AA/1303:1308,
1/AA/1329:1334
No text annotation
Not in a motif group
geometric
IL_4V88_462
IL_19954.2
IL_4V64_0601/AA/1399:1401,
1/AA/1501:1504
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.3
IL_4V64_0611/AA/1401:1404,
1/AA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4V64_0621/AA/1405:1407,
1/AA/1494:1496
No text annotation
Not in a motif group
geometric
IL_3TD0_001
IL_95997.1
IL_4V64_0631/AA/1407:1409,
1/AA/1491:1494
No text annotation
Not in a motif group
IL_4V64_0641/AA/1412:1414,
1/AA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_4V64_0651/AA/1416:1419,
1/AA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_4V64_0661/AA/1430:1435,
1/AA/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_4V64_0671/AA/1440:1442,
1/AA/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_4V64_0681/AA/1445:1448,
1/AA/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5
IL_4V64_0691/BA/17:18,
1/BA/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.2
IL_4V64_0701/BA/23:28,
1/BA/56:60
No text annotation
Not in a motif group
homologous
IL_7A0S_103
IL_18472.2
IL_4V64_0711/BA/30:31,
1/BA/51:54
No text annotation
Not in a motif group
IL_4V64_0721/BA/34:38,
1/BA/44:48
Symmetric double minor groove platform
Not in a motif group
geometric
IL_5J7L_358
IL_58103.6
IL_4V64_0731/BA/71:79,
1/BA/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3
IL_4V64_0741/BB/24:30,
1/BB/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_245
IL_66414.6
IL_4V64_0751/BB/36:37,
1/BB/442:444
Single bulged A
Not in a motif group
homologous
IL_5J7L_246
IL_37497.2
IL_4V64_0761/BB/43:44,
1/BB/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_4V64_0771/BB/81:85,
1/BB/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_4V64_0781/BB/183:184,
1/BB/212:214
Single stack bend
Not in a motif group
homologous
IL_4WF9_007
IL_76488.2
IL_4V64_0791/BB/188:194,
1/BB/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_250
IL_04346.7
IL_4V64_0801/BB/239:245,
1/BB/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_4V64_0811/BB/269:271,
1/BB/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_4V64_0821/BB/274:281,
1/BB/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_4V64_0831/BB/293:295,
1/BB/343:347
No text annotation
Not in a motif group
homologous
IL_4WF9_014
IL_69440.1
IL_4V64_0841/BB/481:484,
1/BB/496:509
No text annotation
Not in a motif group
geometric
IL_5J7L_255
IL_60992.6
IL_4V64_0851/BB/536:539,
1/BB/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_4V64_0861/BB/564:566,
1/BB/575:577
No text annotation
Not in a motif group
geometric
IL_4WF9_017
IL_95997.1
IL_4V64_0871/BB/606:610,
1/BB/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_4V64_0881/BB/672:674,
1/BB/806:808
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_95997.1
IL_4V64_0891/BB/674:678,
1/BB/799:806
No text annotation
Not in a motif group
homologous
IL_7RQB_018
IL_17470.6
IL_4V64_0901/BB/697:698,
1/BB/763:765
Single bulged A
Not in a motif group
geometric
IL_4WF9_022
IL_37497.2
IL_4V64_0911/BB/702:703,
1/BB/728:730
Single bulged G
Not in a motif group
homologous
IL_4WF9_023
IL_00225.2
IL_4V64_0921/BB/703:707,
1/BB/724:728
Triple sheared
Not in a motif group
geometric
IL_5J7L_263
IL_56467.8
IL_4V64_0931/BB/738:740,
1/BB/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.1
IL_4V64_0941/BB/775:777,
1/BB/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_023
IL_90991.6
IL_4V64_0951/BB/837:838,
1/BB/940:942
Single stack bend
Not in a motif group
homologous
IL_5J7L_266
IL_92001.1
IL_4V64_0961/BB/844:848,
1/BB/930:934
No text annotation
Not in a motif group
IL_4V64_0971/BB/850:851,
1/BB/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_4V64_0981/BB/856:858,
1/BB/919:921
No text annotation
Not in a motif group
geometric
IL_5TBW_068
IL_95997.1
IL_4V64_0991/BB/858:862,
1/BB/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_4V9F_033
IL_38862.1
IL_4V64_1001/BB/862:863,
1/BB/913:915
Single bulged G
Not in a motif group
homologous
IL_5J7L_271
IL_00225.2
IL_4V64_1011/BB/864:868,
1/BB/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_4V64_1021/BB/870:872,
1/BB/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_4V64_1031/BB/994:996,
1/BB/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_4V64_1041/BB/998:1002,
1/BB/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_5J7L_277
IL_89002.2
IL_4V64_1051/BB/1004:1011,
1/BB/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5J7L_278
IL_15861.7
IL_4V64_1061/BB/1011:1013,
1/BB/1149:1150
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.13
IL_4V64_1071/BB/1018:1024,
1/BB/1140:1144
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_4V64_1081/BB/1024:1030,
1/BB/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_4V64_1091/BB/1031:1034,
1/BB/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_282
IL_82068.2
IL_4V64_1101/BB/1038:1041,
1/BB/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_4V64_1111/BB/1043:1051,
1/BB/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_4V64_1121/BB/1059:1062,
1/BB/1076:1079
No text annotation
Not in a motif group
homologous
IL_6PRV_001
IL_23544.2
IL_4V64_1131/BB/1087:1090,
1/BB/1101:1102
Major groove platform
Not in a motif group
geometric
IL_4V9F_044
IL_27635.1
IL_4V64_1141/BB/1196:1198,
1/BB/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_044
IL_52767.2
IL_4V64_1151/BB/1202:1206,
1/BB/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_4V64_1161/BB/1208:1215,
1/BB/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7A0S_043
IL_70923.2
IL_4V64_1171/BB/1262:1269,
1/BB/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_4V64_1181/BB/1310:1313,
1/BB/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_4V64_1191/BB/1319:1323,
1/BB/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_4V64_1201/BB/1351:1355,
1/BB/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_4V64_1211/BB/1357:1361,
1/BB/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_4V64_1221/BB/1415:1416,
1/BB/1582:1587
No text annotation
Not in a motif group
IL_4V64_1231/BB/1417:1421,
1/BB/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_4V64_1241/BB/1432:1435,
1/BB/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_4V64_1251/BB/1437:1440,
1/BB/1551:1555
No text annotation
Not in a motif group
IL_4V64_1261/BB/1468:1471,
1/BB/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_4V64_1271/BB/1474:1478,
1/BB/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_4V64_1281/BB/1481:1482,
1/BB/1507:1510
No text annotation
Not in a motif group
IL_4V64_1291/BB/1489:1491,
1/BB/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_4V64_1301/BB/1526:1529,
1/BB/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_4V64_1311/BB/1651:1656,
1/BB/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_4V64_1321/BB/1663:1665,
1/BB/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_4V64_1331/BB/1666:1669,
1/BB/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_4V64_1341/BB/1669:1674,
1/BB/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_5J7L_307
IL_82842.2
IL_4V64_1351/BB/1686:1691,
1/BB/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_5J7L_308
IL_65969.2
IL_4V64_1361/BB/1712:1718,
1/BB/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_4V64_1371/BB/1720:1724,
1/BB/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_4V64_1381/BB/1727:1728,
1/BB/1731:1733
Single bulged C
Not in a motif group
homologous
IL_5J7L_311
IL_61258.12
IL_4V64_1391/BB/1770:1771,
1/BB/1980:1982
Single bulged A
Not in a motif group
homologous
IL_5J7L_312
IL_37497.2
IL_4V64_1401/BB/1798:1804,
1/BB/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_4V64_1411/BB/1837:1840,
1/BB/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_4V64_1421/BB/1841:1842,
1/BB/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_4V64_1431/BB/1846:1849,
1/BB/1893:1894
Minor groove platform
Not in a motif group
homologous
IL_7RQB_073
IL_88739.1
IL_4V64_1441/BB/1864:1867,
1/BB/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_4V64_1451/BB/1933:1934,
1/BB/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_318
IL_59677.2
IL_4V64_1461/BB/1934:1945,
1/BB/1961:1964
No text annotation
Not in a motif group
homologous
IL_7A0S_072
IL_81589.2
IL_4V64_1471/BB/2050:2052,
1/BB/2617:2618
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.1
IL_4V64_1481/BB/2054:2056,
1/BB/2612:2615
No text annotation
Not in a motif group
IL_4V64_1491/BB/2067:2069,
1/BB/2442:2443
Single bulged U
Not in a motif group
homologous
IL_4WF9_080
IL_83039.13
IL_4V64_1501/BB/2070:2071,
1/BB/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_4V64_1511/BB/2081:2083,
1/BB/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_4V64_1521/BB/2085:2087,
1/BB/2232:2234
No text annotation
Not in a motif group
homologous
IL_7RQB_083
IL_95997.1
IL_4V64_1531/BB/2103:2105,
1/BB/2184:2186
No text annotation
Not in a motif group
IL_4V64_1541/BB/2108:2110,
1/BB/2179:2181
No text annotation
Not in a motif group
homologous
IL_3U4M_001
IL_95997.1
IL_4V64_1551/BB/2202:2204,
1/BB/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_4V64_1561/BB/2297:2299,
1/BB/2317:2321
No text annotation
Not in a motif group
geometric
IL_5J7L_332
IL_56105.1
IL_4V64_1571/BB/2350:2353,
1/BB/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_4V64_1581/BB/2401:2403,
1/BB/2414:2415
No text annotation
Not in a motif group
IL_4V64_1591/BB/2453:2454,
1/BB/2498:2500
Single stack bend
Not in a motif group
geometric
IL_4WF9_089
IL_76488.2
IL_4V64_1601/BB/2454:2455,
1/BB/2496:2498
Major groove platform
Not in a motif group
homologous
IL_4WF9_090
IL_27635.1
IL_4V64_1611/BB/2457:2459,
1/BB/2493:2494
Major groove platform
Not in a motif group
homologous
IL_4WF9_091
IL_27635.1
IL_4V64_1621/BB/2459:2461,
1/BB/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_5J7L_337
IL_92788.2
IL_4V64_1631/BB/2466:2470,
1/BB/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_4V64_1641/BB/2507:2508,
1/BB/2580:2582
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_4V64_1651/BB/2510:2512,
1/BB/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_340
IL_90933.2
IL_4V64_1661/BB/2512:2513,
1/BB/2571:2574
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_4V64_1671/BB/2522:2523,
1/BB/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_4V64_1681/BB/2591:2592,
1/BB/2601:2603
Single bulged A
Not in a motif group
homologous
IL_5J7L_344
IL_37497.2
IL_4V64_1691/BB/2636:2640,
1/BB/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_4V64_1701/BB/2652:2658,
1/BB/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_5J7L_346
IL_16458.1
IL_4V64_1711/BB/2680:2684,
1/BB/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_4V64_1721/BB/2687:2691,
1/BB/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_4V64_1731/BB/2695:2696,
1/BB/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_4V64_1741/BB/2737:2742,
1/BB/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_4V64_1751/BB/2806:2811,
1/BB/2889:2892
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_49460.2
IL_4V64_1761/BB/2838:2839,
1/BB/2878:2880
Single bulged C
Not in a motif group
homologous
IL_7RQB_108
IL_61258.12
IL_4V64_1771/BB/2843:2846,
1/BB/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_4V64_1781/BB/2847:2852,
1/BB/2865:2869
No text annotation
Not in a motif group
homologous
IL_7A0S_101
IL_83162.5
IL_4V64_1791/CA/30:32,
1/CA/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.2
IL_4V64_1801/CA/44:45,
1/CA/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_4V64_1811/CA/47:52,
1/CA/359:361
No text annotation
Not in a motif group
geometric
IL_5J7L_003
IL_11178.1
IL_4V64_1821/CA/54:56,
1/CA/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_4V64_1831/CA/63:66,
1/CA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_4V64_1841/CA/67:69,
1/CA/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_4V64_1851/CA/70:73,
1/CA/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_4V64_1861/CA/75:76,
1/CA/93:95
Single bulged G
Not in a motif group
geometric
IL_7A0S_099
IL_00225.2
IL_4V64_1871/CA/128:131,
1/CA/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_4V64_1881/CA/132:136,
1/CA/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_4V64_1891/CA/144:146,
1/CA/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_4V64_1901/CA/147:153,
1/CA/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_4V64_1911/CA/203:206,
1/CA/213:214
Minor groove platform
Not in a motif group
geometric
IL_3MXH_005
IL_15052.1
IL_4V64_1921/CA/242:247,
1/CA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_4V64_1931/CA/249:252,
1/CA/274:275
No text annotation
Not in a motif group
homologous
IL_5J7L_015
IL_48100.2
IL_4V64_1941/CA/292:293,
1/CA/304:308
C-loop
Not in a motif group
homologous
IL_6CZR_125
IL_37712.2
IL_4V64_1951/CA/367:369,
1/CA/392:393
Single bulged U
Not in a motif group
geometric
IL_5J7L_017
IL_83039.13
IL_4V64_1961/CA/371:375,
1/CA/389:390
C-loop
Not in a motif group
homologous
IL_4LFB_015
IL_75255.1
IL_4V64_1971/CA/375:376,
1/CA/387:389
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_4V64_1981/CA/409:416,
1/CA/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_4V64_1991/CA/440:442,
1/CA/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_4V64_2001/CA/446:450,
1/CA/483:488
tSH-tHW-tWW
Not in a motif group
geometric
IL_5J7L_022
IL_88269.3
IL_4V64_2011/CA/450:454,
1/CA/479:483
No text annotation
Not in a motif group
IL_4V64_2021/CA/454:455,
1/CA/477:479
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_4V64_2031/CA/458:459,
1/CA/472:474
Single stack bend
Not in a motif group
geometric
IL_4V83_236
IL_76488.2
IL_4V64_2041/CA/460:462,
1/CA/470:471
No text annotation
Not in a motif group
IL_4V64_2051/CA/504:511,
1/CA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_4V64_2061/CA/515:521,
1/CA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V64_2071/CA/569:575,
1/CA/880:881
No text annotation
Not in a motif group
homologous
IL_5J7L_026
IL_69996.1
IL_4V64_2081/CA/580:584,
1/CA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_4V64_2091/CA/594:596,
1/CA/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_4V64_2101/CA/597:598,
1/CA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_4V64_2111/CA/605:612,
1/CA/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_4V64_2121/CA/654:655,
1/CA/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_50694.2
IL_4V64_2131/CA/658:659,
1/CA/746:748
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_4V64_2141/CA/662:666,
1/CA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_4V64_2151/CA/673:678,
1/CA/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_4V64_2161/CA/684:688,
1/CA/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_4V64_2171/CA/774:778,
1/CA/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_4V64_2181/CA/779:783,
1/CA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_4V64_2191/CA/887:894,
1/CA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_4V64_2201/CA/922:923,
1/CA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.2
IL_4V64_2211/CA/925:927,
1/CA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.2
IL_4V64_2221/CA/933:935,
1/CA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_4V64_2231/CA/953:954,
1/CA/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.2
IL_4V64_2241/CA/993:997,
1/CA/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_5J7L_043
IL_47078.1
IL_4V64_2251/CA/998:999,
1/CA/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_4V64_2261/CA/1048:1050,
1/CA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_4V64_2271/CA/1052:1056,
1/CA/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_4V64_2281/CA/1057:1058,
1/CA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_4LFB_045
IL_93353.1
IL_4V64_2291/CA/1060:1061,
1/CA/1195:1197
Single bulged A
Not in a motif group
homologous
IL_5J7L_049
IL_37497.2
IL_4V64_2301/CA/1061:1063,
1/CA/1193:1195
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_95997.1
IL_4V64_2311/CA/1124:1128,
1/CA/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_4V64_2321/CA/1129:1132,
1/CA/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_4V64_2331/CA/1158:1161,
1/CA/1175:1181
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_4V64_2341/CA/1247:1253,
1/CA/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_4V64_2351/CA/1255:1258,
1/CA/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_4V64_2361/CA/1259:1263,
1/CA/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_4V64_2371/CA/1303:1308,
1/CA/1329:1334
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_4V64_2381/CA/1399:1401,
1/CA/1501:1504
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_4V64_2391/CA/1401:1404,
1/CA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4V64_2401/CA/1405:1407,
1/CA/1494:1496
No text annotation
Not in a motif group
geometric
IL_5MWI_005
IL_95997.1
IL_4V64_2411/CA/1407:1409,
1/CA/1491:1494
No text annotation
Not in a motif group
IL_4V64_2421/CA/1412:1414,
1/CA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_4V64_2431/CA/1416:1419,
1/CA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_4V64_2441/CA/1430:1435,
1/CA/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_4V64_2451/CA/1440:1442,
1/CA/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_4V64_2461/CA/1445:1448,
1/CA/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5
IL_4V64_2471/DA/17:18,
1/DA/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.2
IL_4V64_2481/DA/23:28,
1/DA/56:60
No text annotation
Not in a motif group
homologous
IL_7A0S_103
IL_18472.2
IL_4V64_2491/DA/30:31,
1/DA/51:54
No text annotation
Not in a motif group
IL_4V64_2501/DA/34:38,
1/DA/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5J7L_358
IL_58103.6
IL_4V64_2511/DA/71:79,
1/DA/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3
IL_4V64_2521/DB/24:30,
1/DB/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_5J7L_245
IL_66414.6
IL_4V64_2531/DB/36:37,
1/DB/442:444
Single bulged A
Not in a motif group
homologous
IL_5J7L_246
IL_37497.2
IL_4V64_2541/DB/43:44,
1/DB/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_4V64_2551/DB/81:85,
1/DB/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_4V64_2561/DB/183:184,
1/DB/212:214
Single stack bend
Not in a motif group
homologous
IL_4WF9_007
IL_76488.2
IL_4V64_2571/DB/188:194,
1/DB/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_250
IL_04346.7
IL_4V64_2581/DB/239:245,
1/DB/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_4V64_2591/DB/269:271,
1/DB/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_4V64_2601/DB/274:281,
1/DB/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_4V64_2611/DB/293:295,
1/DB/343:347
No text annotation
Not in a motif group
homologous
IL_4WF9_014
IL_69440.1
IL_4V64_2621/DB/481:484,
1/DB/496:509
No text annotation
Not in a motif group
homologous
IL_5J7L_255
IL_60992.6
IL_4V64_2631/DB/536:539,
1/DB/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_4V64_2641/DB/564:566,
1/DB/575:577
No text annotation
Not in a motif group
geometric
IL_4WF9_017
IL_95997.1
IL_4V64_2651/DB/606:610,
1/DB/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_4V64_2661/DB/672:674,
1/DB/806:808
No text annotation
Not in a motif group
homologous
IL_7RQB_017
IL_95997.1
IL_4V64_2671/DB/674:678,
1/DB/799:806
No text annotation
Not in a motif group
geometric
IL_7RQB_018
IL_17470.6
IL_4V64_2681/DB/697:698,
1/DB/763:765
Single bulged A
Not in a motif group
geometric
IL_4WF9_022
IL_37497.2
IL_4V64_2691/DB/702:703,
1/DB/728:730
Single bulged G
Not in a motif group
geometric
IL_4WF9_023
IL_00225.2
IL_4V64_2701/DB/703:707,
1/DB/724:728
Triple sheared
Not in a motif group
homologous
IL_5J7L_263
IL_56467.8
IL_4V64_2711/DB/738:740,
1/DB/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.1
IL_4V64_2721/DB/775:777,
1/DB/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_023
IL_90991.6
IL_4V64_2731/DB/837:838,
1/DB/940:942
Single stack bend
Not in a motif group
homologous
IL_5J7L_266
IL_92001.1
IL_4V64_2741/DB/844:848,
1/DB/930:934
No text annotation
Not in a motif group
IL_4V64_2751/DB/850:851,
1/DB/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_4V64_2761/DB/856:858,
1/DB/919:921
No text annotation
Not in a motif group
geometric
IL_5TBW_068
IL_95997.1
IL_4V64_2771/DB/858:862,
1/DB/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_4V9F_033
IL_38862.1
IL_4V64_2781/DB/862:863,
1/DB/913:915
Single bulged G
Not in a motif group
geometric
IL_5J7L_271
IL_00225.2
IL_4V64_2791/DB/864:868,
1/DB/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_4V64_2801/DB/870:872,
1/DB/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_4V64_2811/DB/994:996,
1/DB/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_4V64_2821/DB/998:1002,
1/DB/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_5J7L_277
IL_89002.2
IL_4V64_2831/DB/1004:1011,
1/DB/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.7
IL_4V64_2841/DB/1011:1013,
1/DB/1149:1150
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.13
IL_4V64_2851/DB/1018:1024,
1/DB/1140:1144
No text annotation
Not in a motif group
homologous
IL_4WF9_039
IL_57188.3
IL_4V64_2861/DB/1024:1030,
1/DB/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_4V64_2871/DB/1031:1034,
1/DB/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_282
IL_82068.2
IL_4V64_2881/DB/1038:1041,
1/DB/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_4V64_2891/DB/1043:1051,
1/DB/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_4V64_2901/DB/1059:1062,
1/DB/1076:1079
No text annotation
Not in a motif group
homologous
IL_6PRV_001
IL_23544.2
IL_4V64_2911/DB/1087:1090,
1/DB/1101:1102
No text annotation
Not in a motif group
homologous
IL_6PRV_002
NA
IL_4V64_2921/DB/1196:1198,
1/DB/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_5J7L_286
IL_52767.2
IL_4V64_2931/DB/1202:1206,
1/DB/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_4V64_2941/DB/1208:1215,
1/DB/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7A0S_043
IL_70923.2
IL_4V64_2951/DB/1262:1269,
1/DB/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_4V64_2961/DB/1310:1313,
1/DB/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_4V64_2971/DB/1319:1323,
1/DB/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_4V64_2981/DB/1351:1355,
1/DB/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_4V64_2991/DB/1357:1361,
1/DB/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_4V64_3001/DB/1415:1416,
1/DB/1582:1587
No text annotation
Not in a motif group
IL_4V64_3011/DB/1417:1421,
1/DB/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_4V64_3021/DB/1432:1435,
1/DB/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_4V64_3031/DB/1437:1440,
1/DB/1551:1555
No text annotation
Not in a motif group
IL_4V64_3041/DB/1468:1471,
1/DB/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_4V64_3051/DB/1474:1478,
1/DB/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_4V64_3061/DB/1481:1482,
1/DB/1507:1510
No text annotation
Not in a motif group
IL_4V64_3071/DB/1489:1491,
1/DB/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_4V64_3081/DB/1526:1529,
1/DB/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_4V64_3091/DB/1651:1656,
1/DB/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_4V64_3101/DB/1663:1665,
1/DB/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_4V64_3111/DB/1666:1669,
1/DB/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_50694.2
IL_4V64_3121/DB/1669:1674,
1/DB/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_5J7L_307
IL_82842.2
IL_4V64_3131/DB/1686:1691,
1/DB/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_5J7L_308
IL_65969.2
IL_4V64_3141/DB/1712:1718,
1/DB/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_4V64_3151/DB/1720:1724,
1/DB/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_4V64_3161/DB/1727:1728,
1/DB/1731:1733
Single bulged C
Not in a motif group
geometric
IL_5J7L_311
IL_61258.12
IL_4V64_3171/DB/1770:1771,
1/DB/1980:1982
Single bulged A
Not in a motif group
homologous
IL_5J7L_312
IL_37497.2
IL_4V64_3181/DB/1798:1804,
1/DB/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_4V64_3191/DB/1837:1840,
1/DB/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_4V64_3201/DB/1841:1842,
1/DB/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_4V64_3211/DB/1846:1849,
1/DB/1893:1894
Minor groove platform
Not in a motif group
homologous
IL_7RQB_073
IL_88739.1
IL_4V64_3221/DB/1864:1867,
1/DB/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_4V64_3231/DB/1933:1934,
1/DB/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_318
IL_59677.2
IL_4V64_3241/DB/1934:1945,
1/DB/1961:1964
No text annotation
Not in a motif group
homologous
IL_7A0S_072
IL_81589.2
IL_4V64_3251/DB/2050:2052,
1/DB/2617:2618
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.1
IL_4V64_3261/DB/2054:2056,
1/DB/2612:2615
No text annotation
Not in a motif group
IL_4V64_3271/DB/2067:2069,
1/DB/2442:2443
Single bulged U
Not in a motif group
homologous
IL_4WF9_080
IL_83039.13
IL_4V64_3281/DB/2070:2071,
1/DB/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_4V64_3291/DB/2081:2083,
1/DB/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_4V64_3301/DB/2085:2087,
1/DB/2232:2234
No text annotation
Not in a motif group
homologous
IL_7RQB_083
IL_95997.1
IL_4V64_3311/DB/2103:2105,
1/DB/2184:2186
No text annotation
Not in a motif group
IL_4V64_3321/DB/2108:2110,
1/DB/2179:2181
No text annotation
Not in a motif group
IL_4V64_3331/DB/2202:2204,
1/DB/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_4V64_3341/DB/2297:2299,
1/DB/2317:2321
No text annotation
Not in a motif group
geometric
IL_5J7L_332
IL_56105.1
IL_4V64_3351/DB/2350:2353,
1/DB/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_4V64_3361/DB/2401:2403,
1/DB/2414:2415
No text annotation
Not in a motif group
IL_4V64_3371/DB/2453:2454,
1/DB/2498:2500
Single stack bend
Not in a motif group
homologous
IL_4WF9_089
IL_76488.2
IL_4V64_3381/DB/2454:2455,
1/DB/2496:2498
Major groove platform
Not in a motif group
geometric
IL_4WF9_090
IL_27635.1
IL_4V64_3391/DB/2457:2459,
1/DB/2493:2494
Major groove platform
Not in a motif group
homologous
IL_4WF9_091
IL_27635.1
IL_4V64_3401/DB/2459:2461,
1/DB/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_5J7L_337
IL_92788.2
IL_4V64_3411/DB/2466:2470,
1/DB/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_4V64_3421/DB/2507:2508,
1/DB/2580:2582
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_4V64_3431/DB/2510:2512,
1/DB/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_90933.2
IL_4V64_3441/DB/2512:2513,
1/DB/2571:2574
No text annotation
Not in a motif group
homologous
IL_5J7L_341
IL_71530.2
IL_4V64_3451/DB/2522:2523,
1/DB/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_4V64_3461/DB/2591:2592,
1/DB/2601:2603
Single bulged A
Not in a motif group
homologous
IL_5J7L_344
IL_37497.2
IL_4V64_3471/DB/2636:2640,
1/DB/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_4V64_3481/DB/2652:2658,
1/DB/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_5J7L_346
IL_16458.1
IL_4V64_3491/DB/2680:2684,
1/DB/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_4V64_3501/DB/2687:2691,
1/DB/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_4V64_3511/DB/2695:2696,
1/DB/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_4V64_3521/DB/2737:2742,
1/DB/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_4V64_3531/DB/2806:2811,
1/DB/2889:2892
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_49460.2
IL_4V64_3541/DB/2838:2839,
1/DB/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_16396.2
IL_4V64_3551/DB/2843:2846,
1/DB/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_4V64_3561/DB/2847:2852,
1/DB/2865:2869
No text annotation
Not in a motif group
homologous
IL_7A0S_101
IL_83162.5

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V64_0011/AA/46:47,
1/AA/361:367,
1/AA/393:395
No text annotation
Not in a motif group
J3_4V64_0021/AA/586:588,
1/AA/651:654,
1/AA/754:755
No text annotation
Not in a motif group
J3_4V64_0031/AA/672:673,
1/AA/717:725,
1/AA/732:734
No text annotation
Not in a motif group
J3_4V64_0041/AA/826:829,
1/AA/857:861,
1/AA/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_4V64_0051/AA/936:939,
1/AA/1344:1350,
1/AA/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_4V64_0061/AA/943:946,
1/AA/1235:1237,
1/AA/1337:1340
No text annotation
Not in a motif group
J3_4V64_0071/AA/955:962,
1/AA/973:984,
1/AA/1221:1225
No text annotation
Not in a motif group
J3_4V64_0081/AA/990:993,
1/AA/1045:1047,
1/AA/1210:1215
No text annotation
Not in a motif group
J3_4V64_0091/AA/1003:1006,
1/AA/1023:1027,
1/AA/1034:1037
No text annotation
Not in a motif group
J3_4V64_0101/AA/1063:1068,
1/AA/1107:1113,
1/AA/1187:1193
No text annotation
Not in a motif group
J3_4V64_0111/AA/1073:1074,
1/AA/1083:1087,
1/AA/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_4V64_0121/AA/1116:1118,
1/AA/1155:1158,
1/AA/1181:1184
No text annotation
Not in a motif group
homologous
J3_5J7L_010
NA
J3_4V64_0131/AA/1237:1241,
1/AA/1296:1303,
1/AA/1334:1337
No text annotation
Not in a motif group
homologous
J3_5J7L_011
NA
J3_4V64_0141/BA/10:16,
1/BA/68:70,
1/BA/106:110
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA
J3_4V64_0151/BB/30:31,
1/BB/474:481,
1/BB/509:510
No text annotation
Not in a motif group
J3_4V64_0161/BB/56:57,
1/BB/70:76,
1/BB/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_4V64_0171/BB/683:689,
1/BB/773:775,
1/BB/791:794
No text annotation
Not in a motif group
homologous
J3_5J7L_038
NA
J3_4V64_0181/BB/698:700,
1/BB/732:736,
1/BB/760:763
No text annotation
Not in a motif group
homologous
J3_5J7L_039
NA
J3_4V64_0191/BB/1055:1057,
1/BB/1081:1087,
1/BB/1102:1104
No text annotation
Not in a motif group
homologous
J3_6PRV_001
NA
J3_4V64_0201/BB/1298:1303,
1/BB/1625:1627,
1/BB/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_4V64_0211/BB/1306:1309,
1/BB/1605:1611,
1/BB/1620:1622
No text annotation
Not in a motif group
homologous
J3_7RQB_008
NA
J3_4V64_0221/BB/2091:2093,
1/BB/2196:2200,
1/BB/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_4V64_0231/BB/2295:2297,
1/BB/2321:2323,
1/BB/2332:2337
No text annotation
Not in a motif group
homologous
J3_4WF9_008
NA
J3_4V64_0241/BB/2517:2520,
1/BB/2545:2547,
1/BB/2561:2567
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_4V64_0251/BB/2789:2791,
1/BB/2805:2806,
1/BB/2892:2894
No text annotation
Not in a motif group
J3_4V64_0261/BB/2812:2815,
1/BB/2831:2836,
1/BB/2882:2888
No text annotation
Not in a motif group
J3_4V64_0271/CA/46:47,
1/CA/361:367,
1/CA/393:395
No text annotation
Not in a motif group
homologous
J3_5J7L_001
NA
J3_4V64_0281/CA/586:588,
1/CA/651:654,
1/CA/754:755
No text annotation
Not in a motif group
J3_4V64_0291/CA/672:673,
1/CA/717:725,
1/CA/732:734
No text annotation
Not in a motif group
J3_4V64_0301/CA/826:829,
1/CA/857:861,
1/CA/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_4V64_0311/CA/936:939,
1/CA/1344:1350,
1/CA/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_4V64_0321/CA/943:946,
1/CA/1235:1237,
1/CA/1337:1340
No text annotation
Not in a motif group
J3_4V64_0331/CA/955:962,
1/CA/973:984,
1/CA/1221:1225
No text annotation
Not in a motif group
J3_4V64_0341/CA/990:993,
1/CA/1045:1047,
1/CA/1210:1215
No text annotation
Not in a motif group
homologous
J3_4LFB_005
NA
J3_4V64_0351/CA/1003:1006,
1/CA/1023:1027,
1/CA/1034:1037
No text annotation
Not in a motif group
J3_4V64_0361/CA/1063:1068,
1/CA/1107:1113,
1/CA/1187:1193
No text annotation
Not in a motif group
J3_4V64_0371/CA/1073:1074,
1/CA/1083:1087,
1/CA/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_4V64_0381/CA/1116:1118,
1/CA/1155:1158,
1/CA/1181:1184
No text annotation
Not in a motif group
homologous
J3_5J7L_010
NA
J3_4V64_0391/CA/1237:1241,
1/CA/1296:1303,
1/CA/1334:1337
No text annotation
Not in a motif group
J3_4V64_0401/DA/10:16,
1/DA/68:70,
1/DA/106:110
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA
J3_4V64_0411/DB/30:31,
1/DB/474:481,
1/DB/509:510
No text annotation
Not in a motif group
J3_4V64_0421/DB/56:57,
1/DB/70:76,
1/DB/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_4V64_0431/DB/683:689,
1/DB/773:775,
1/DB/791:794
No text annotation
Not in a motif group
J3_4V64_0441/DB/698:700,
1/DB/732:736,
1/DB/760:763
No text annotation
Not in a motif group
homologous
J3_5J7L_039
NA
J3_4V64_0451/DB/1055:1057,
1/DB/1081:1087,
1/DB/1102:1104
No text annotation
Not in a motif group
J3_4V64_0461/DB/1298:1303,
1/DB/1625:1627,
1/DB/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_4V64_0471/DB/1306:1309,
1/DB/1605:1611,
1/DB/1620:1622
No text annotation
Not in a motif group
homologous
J3_7RQB_008
NA
J3_4V64_0481/DB/2091:2093,
1/DB/2196:2200,
1/DB/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_4V64_0491/DB/2295:2297,
1/DB/2321:2323,
1/DB/2332:2337
No text annotation
Not in a motif group
homologous
J3_4WF9_008
NA
J3_4V64_0501/DB/2517:2520,
1/DB/2545:2547,
1/DB/2561:2567
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_4V64_0511/DB/2789:2791,
1/DB/2805:2806,
1/DB/2892:2894
No text annotation
Not in a motif group
J3_4V64_0521/DB/2812:2815,
1/DB/2831:2836,
1/DB/2882:2888
No text annotation
Not in a motif group

Problematic loops

No problematic loops


Coloring options:
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