Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6WNT_0011/4/59:68No text annotation
Not in a motif group
geometric
HL_4GXY_003
HL_96598.1
HL_6WNT_0021/4/87:95No text annotation
Not in a motif group
geometric
HL_5J7L_135
HL_84193.1
HL_6WNT_0031/4/123:128No text annotation
Not in a motif group
geometric
HL_5J7L_136
HL_75407.1
HL_6WNT_0041/4/137:142No text annotation
Not in a motif group
geometric
HL_5TBW_022
HL_94803.2
HL_6WNT_0051/4/158:168No text annotation
Not in a motif group
geometric
HL_5J7L_138
HL_81820.1
HL_6WNT_0061/4/194:201No text annotation
Not in a motif group
geometric
HL_5J7L_139
HL_06192.2
HL_6WNT_0071/4/225:230No text annotation
Not in a motif group
geometric
HL_5J7L_140
HL_27930.1
HL_6WNT_0081/4/246:252No text annotation
Not in a motif group
geometric
HL_5J7L_141
HL_67216.7
HL_6WNT_0091/4/305:312T-loop with 2 bulged bases not stacked
Not in a motif group
geometric
HL_5C45_003
HL_89380.2
HL_6WNT_0101/4/327:335No text annotation
Not in a motif group
geometric
HL_7RQB_012
HL_08002.9
HL_6WNT_0111/4/382:392No text annotation
Not in a motif group
geometric
HL_5J7L_145
HL_91503.4
HL_6WNT_0121/4/410:417No text annotation
Not in a motif group
geometric
HL_5J7L_146
HL_96598.1
HL_6WNT_0131/4/462:467No text annotation
Not in a motif group
geometric
HL_7RQB_015
HL_42097.2
HL_6WNT_0141/4/487:493No text annotation
Not in a motif group
geometric
HL_5J7L_148
HL_42097.2
HL_6WNT_0151/4/544:549No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_6WNT_0161/4/566:575T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5J7L_150
HL_89380.2
HL_6WNT_0171/4/611:617No text annotation
Not in a motif group
geometric
HL_361D_002
HL_90617.2
HL_6WNT_0181/4/629:634GNRA
Not in a motif group
geometric
HL_5J7L_152
HL_42097.2
HL_6WNT_0191/4/640:648No text annotation
Not in a motif group
HL_6WNT_0201/4/712:719No text annotation
Not in a motif group
geometric
HL_5J7L_154
HL_84085.2
HL_6WNT_0211/4/744:753No text annotation
Not in a motif group
geometric
HL_7A0S_022
HL_39334.6
HL_6WNT_0221/4/779:785No text annotation
Not in a motif group
geometric
HL_7A0S_007
HL_02862.2
HL_6WNT_0231/4/826:831No text annotation
Not in a motif group
geometric
HL_7RQB_025
HL_64365.1
HL_6WNT_0241/4/882:894No text annotation
Not in a motif group
HL_6WNT_0251/4/955:962No text annotation
Not in a motif group
HL_6WNT_0261/4/978:985No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_6WNT_0271/4/1061:1067No text annotation
Not in a motif group
geometric
HL_2ZNI_001
HL_75407.1
HL_6WNT_0281/4/1104:1110No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_6WNT_0291/4/1192:1202No text annotation
Not in a motif group
HL_6WNT_0301/4/1220:1227No text annotation
Not in a motif group
geometric
HL_7RQB_022
HL_84085.2
HL_6WNT_0311/4/1299:1306No text annotation
Not in a motif group
HL_6WNT_0321/4/1350:1355Other HL
Not in a motif group
geometric
HL_5J7L_164
HL_87030.2
HL_6WNT_0331/4/1409:1417T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5J7L_165
HL_89380.2
HL_6WNT_0341/4/1452:1458No text annotation
Not in a motif group
geometric
HL_5J7L_166
HL_46680.1
HL_6WNT_0351/4/1491:1496Other HL
Not in a motif group
geometric
HL_5J7L_167
HL_87030.2
HL_6WNT_0361/4/1517:1526No text annotation
Not in a motif group
geometric
HL_5J7L_168
HL_69023.2
HL_6WNT_0371/4/1579:1587No text annotation
Not in a motif group
geometric
HL_5J7L_169
HL_53837.1
HL_6WNT_0381/4/1620:1626No text annotation
Not in a motif group
geometric
HL_5J7L_170
HL_46680.1
HL_6WNT_0391/4/1661:1666No text annotation
Not in a motif group
HL_6WNT_0401/4/1693:1696No text annotation
Not in a motif group
geometric
HL_4V9F_041
HL_49678.1
HL_6WNT_0411/4/1740:1747No text annotation
Not in a motif group
geometric
HL_7RQB_040
HL_64430.2
HL_6WNT_0421/4/1758:1764GNRA with one bulged base
Not in a motif group
geometric
HL_5J7L_174
HL_42097.2
HL_6WNT_0431/4/1819:1824UNCG
Not in a motif group
geometric
HL_4PMI_004
HL_03562.2
HL_6WNT_0441/4/1855:1861No text annotation
Not in a motif group
geometric
HL_5TBW_012
HL_86373.2
HL_6WNT_0451/4/1880:1884No text annotation
Not in a motif group
geometric
HL_4V9F_046
HL_76539.2
HL_6WNT_0461/4/1905:1915No text annotation
Not in a motif group
geometric
HL_4WF9_043
HL_43613.5
HL_6WNT_0471/4/1934:1939No text annotation
Not in a motif group
geometric
HL_5J7L_179
HL_42097.2
HL_6WNT_0481/4/1996:2001GNRA
Not in a motif group
geometric
HL_2OIU_001
HL_42097.2
HL_6WNT_0491/4/2038:2048No text annotation
Not in a motif group
HL_6WNT_0501/4/2077:2085No text annotation
Not in a motif group
geometric
HL_5J7L_182
HL_51824.1
HL_6WNT_0511/4/2155:2164No text annotation
Not in a motif group
geometric
HL_4WF9_047
HL_90642.6
HL_6WNT_0521/4/2267:2280No text annotation
Not in a motif group
HL_6WNT_0531/4/2337:2343No text annotation
Not in a motif group
geometric
HL_5J7L_185
HL_16845.6
HL_6WNT_0541/4/2376:2384No text annotation
Not in a motif group
geometric
HL_4LFB_002
HL_30784.2
HL_6WNT_0551/4/2392:2404No text annotation
Not in a motif group
geometric
HL_7RQB_054
HL_19870.6
HL_6WNT_0561/4/2431:2441No text annotation
Not in a motif group
geometric
HL_5J7L_188
HL_11805.3
HL_6WNT_0571/4/2452:2459No text annotation
Not in a motif group
geometric
HL_5J7L_189
HL_12078.2
HL_6WNT_0581/4/2484:2489Other HL
Not in a motif group
geometric
HL_5J7L_190
HL_87030.2
HL_6WNT_0591/4/2502:2507No text annotation
Not in a motif group
geometric
HL_7RQB_020
HL_42097.2
HL_6WNT_0601/4/2532:2541No text annotation
Not in a motif group
geometric
HL_5J7L_192
HL_30784.2
HL_6WNT_0611/4/2599:2607No text annotation
Not in a motif group
geometric
HL_7A0S_059
HL_06192.2
HL_6WNT_0621/4/2656:2663No text annotation
Not in a motif group
geometric
HL_5J7L_194
HL_91104.1
HL_6WNT_0631/4/2679:2685No text annotation
Not in a motif group
geometric
HL_5TBW_063
HL_43656.2
HL_6WNT_0641/4/2722:2727No text annotation
Not in a motif group
geometric
HL_7RQB_069
HL_42097.2
HL_6WNT_0651/4/2786:2791GNRA
Not in a motif group
geometric
HL_4V9F_066
HL_42097.2
HL_6WNT_0661/4/2829:2834Ribsomal LSU H95
Not in a motif group
geometric
HL_5J7L_198
HL_46680.1
HL_6WNT_0671/4/2873:2887No text annotation
Not in a motif group
geometric
HL_5J7L_199
HL_56677.7
HL_6WNT_0681/4/2923:2929No text annotation
Not in a motif group
geometric
HL_7A0S_023
HL_27930.1
HL_6WNT_0691/4/2947:2955No text annotation
Not in a motif group
geometric
HL_5J7L_201
HL_27930.1
HL_6WNT_0701/4/2984:2989Other HL
Not in a motif group
geometric
HL_4Y1M_004
HL_42097.2

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6WNT_0011/4/24:30,
1/4/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_4WF9_001
IL_66414.6
IL_6WNT_0021/4/36:37,
1/4/442:444
Single bulged A
Not in a motif group
geometric
IL_7RQB_002
IL_37497.3
IL_6WNT_0031/4/43:44,
1/4/434:436
Minor groove platform
Not in a motif group
geometric
IL_5J7L_247
IL_42622.2
IL_6WNT_0041/4/81:85,
1/4/97:105
No text annotation
Not in a motif group
geometric
IL_5J7L_248
IL_93699.1
IL_6WNT_0051/4/183:184,
1/4/212:214
Single stack bend
Not in a motif group
geometric
IL_5J7L_249
IL_76488.2
IL_6WNT_0061/4/188:194,
1/4/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_250
IL_04346.7
IL_6WNT_0071/4/239:245,
1/4/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_251
IL_76042.2
IL_6WNT_0081/4/269:271,
1/4/366:370
No text annotation
Not in a motif group
geometric
IL_5J7L_252
IL_47972.1
IL_6WNT_0091/4/274:281,
1/4/359:363
No text annotation
Not in a motif group
IL_6WNT_0101/4/293:295,
1/4/343:347
No text annotation
Not in a motif group
geometric
IL_5J7L_254
IL_69440.1
IL_6WNT_0111/4/481:484,
1/4/496:509
No text annotation
Not in a motif group
geometric
IL_5J7L_255
IL_60992.6
IL_6WNT_0121/4/536:539,
1/4/554:557
Double sheared
Not in a motif group
geometric
IL_5J7L_256
IL_09705.9
IL_6WNT_0131/4/564:566,
1/4/575:577
No text annotation
Not in a motif group
geometric
IL_5J7L_257
IL_95997.1
IL_6WNT_0141/4/606:610,
1/4/618:622
AAA cross-strand stack
Not in a motif group
geometric
IL_5J7L_258
IL_17136.1
IL_6WNT_0151/4/672:674,
1/4/806:808
No text annotation
Not in a motif group
geometric
IL_5J7L_259
IL_95997.1
IL_6WNT_0161/4/674:678,
1/4/799:806
No text annotation
Not in a motif group
geometric
IL_7RQB_018
IL_17470.6
IL_6WNT_0171/4/697:698,
1/4/763:765
Single bulged A
Not in a motif group
geometric
IL_5J7L_261
IL_37497.3
IL_6WNT_0181/4/702:703,
1/4/728:730
Single bulged G
Not in a motif group
geometric
IL_7A0S_017
IL_00225.3
IL_6WNT_0191/4/703:707,
1/4/724:728
Triple sheared
Not in a motif group
geometric
IL_5J7L_263
IL_56467.8
IL_6WNT_0201/4/738:740,
1/4/757:758
Major groove platform
Not in a motif group
geometric
IL_4WF9_026
IL_27635.2
IL_6WNT_0211/4/775:777,
1/4/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_265
IL_90991.6
IL_6WNT_0221/4/844:847,
1/4/933:934
Other IL
Not in a motif group
geometric
IL_5J7L_267
IL_92001.1
IL_6WNT_0231/4/847:848,
1/4/930:933
Stack outside cWW
Not in a motif group
geometric
IL_5J7L_268
IL_37629.1
IL_6WNT_0241/4/850:851,
1/4/926:928
Single stack bend
Not in a motif group
geometric
IL_5J7L_269
IL_76488.2
IL_6WNT_0251/4/856:862,
1/4/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_5J7L_270
IL_93830.3
IL_6WNT_0261/4/862:864,
1/4/912:915
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5ML7_010
IL_82068.2
IL_6WNT_0271/4/864:868,
1/4/909:912
C-loop
Not in a motif group
geometric
IL_4V9F_051
IL_63596.6
IL_6WNT_0281/4/870:872,
1/4/905:907
UU cWW
Not in a motif group
geometric
IL_4E48_006
IL_95997.1
IL_6WNT_0291/4/875:879,
1/4/898:902
No text annotation
Not in a motif group
IL_6WNT_0301/4/879:882,
1/4/894:898
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_429
IL_30621.3
IL_6WNT_0311/4/994:996,
1/4/1287:1288
Single bulged C
Not in a motif group
geometric
IL_7RQB_035
IL_61258.12
IL_6WNT_0321/4/998:1002,
1/4/1281:1285
UAA/GAN
Not in a motif group
geometric
IL_4WF9_036
IL_89002.2
IL_6WNT_0331/4/1004:1011,
1/4/1278:1279
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5J7L_278
IL_15861.7
IL_6WNT_0341/4/1011:1013,
1/4/1277:1278
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.14
IL_6WNT_0351/4/1018:1024,
1/4/1268:1272
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_6WNT_0361/4/1039:1047,
1/4/1137:1145
Bacterial 5S Loop E
Not in a motif group
geometric
IL_1DFU_001
IL_56455.3
IL_6WNT_0371/4/1083:1084,
1/4/1131:1133
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.3
IL_6WNT_0381/4/1089:1094,
1/4/1122:1126
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_6WNT_0391/4/1096:1097,
1/4/1117:1120
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_7RQB_113
IL_09061.6
IL_6WNT_0401/4/1100:1104,
1/4/1110:1114
Symmetric double minor groove platform
Not in a motif group
geometric
IL_5J7L_358
IL_58103.6
IL_6WNT_0411/4/1159:1162,
1/4/1249:1251
No text annotation
Not in a motif group
homologous
IL_5TBW_378
IL_95997.1
IL_6WNT_0421/4/1166:1169,
1/4/1242:1245
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5J7L_283
IL_30621.3
IL_6WNT_0431/4/1171:1180,
1/4/1235:1240
No text annotation
Not in a motif group
IL_6WNT_0441/4/1187:1190,
1/4/1204:1207
No text annotation
Not in a motif group
IL_6WNT_0451/4/1215:1219,
1/4/1228:1230
Major groove platform with extra cWW
Not in a motif group
geometric
IL_1MMS_002
IL_05564.2
IL_6WNT_0461/4/1324:1326,
1/4/1375:1378
Isolated cWS basepair
Not in a motif group
geometric
IL_5J7L_286
IL_52767.2
IL_6WNT_0471/4/1330:1334,
1/4/1368:1371
No text annotation
Not in a motif group
geometric
IL_5J7L_287
IL_91920.1
IL_6WNT_0481/4/1336:1343,
1/4/1362:1366
Kink-turn
Not in a motif group
geometric
IL_5J7L_288
IL_70923.2
IL_6WNT_0491/4/1390:1397,
1/4/2139:2145
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_289
IL_04346.7
IL_6WNT_0501/4/1438:1441,
1/4/1731:1732
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_050
IL_50694.2
IL_6WNT_0511/4/1447:1451,
1/4/1459:1461
C-loop
Not in a motif group
geometric
IL_5J7L_291
IL_63596.6
IL_6WNT_0521/4/1479:1483,
1/4/1504:1508
UAA/GAN
Not in a motif group
geometric
IL_5J7L_292
IL_89002.2
IL_6WNT_0531/4/1485:1489,
1/4/1498:1502
tSH-tHW-tHS
Not in a motif group
geometric
IL_5J7L_293
IL_17136.1
IL_6WNT_0541/4/1543:1544,
1/4/1710:1715
No text annotation
Not in a motif group
geometric
IL_5J7L_294
IL_90348.1
IL_6WNT_0551/4/1545:1549,
1/4/1705:1709
UAA/GAN
Not in a motif group
geometric
IL_5J7L_295
IL_89002.2
IL_6WNT_0561/4/1560:1563,
1/4/1685:1689
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5J7L_296
IL_55178.1
IL_6WNT_0571/4/1565:1568,
1/4/1679:1683
tSH-tHW
Not in a motif group
geometric
IL_5J7L_297
IL_04059.1
IL_6WNT_0581/4/1578:1579,
1/4/1587:1589
Single bulged U
Not in a motif group
geometric
IL_5J7L_298
IL_83039.14
IL_6WNT_0591/4/1596:1599,
1/4/1648:1652
No text annotation
Not in a motif group
geometric
IL_5J7L_299
IL_68574.2
IL_6WNT_0601/4/1602:1606,
1/4/1641:1645
tSH-tHW-tHS
Not in a motif group
geometric
IL_5J7L_300
IL_38862.1
IL_6WNT_0611/4/1609:1610,
1/4/1635:1638
No text annotation
Not in a motif group
geometric
IL_5J7L_301
IL_67474.4
IL_6WNT_0621/4/1617:1619,
1/4/1627:1628
Single bulged A
Not in a motif group
geometric
IL_5J7L_302
IL_37497.3
IL_6WNT_0631/4/1654:1658,
1/4/1669:1674
Triple sheared related
Not in a motif group
geometric
IL_4V9F_018
IL_64879.2
IL_6WNT_0641/4/1779:1784,
1/4/2132:2134
No text annotation
Not in a motif group
geometric
IL_5J7L_304
IL_12566.2
IL_6WNT_0651/4/1791:1793,
1/4/2123:2125
Isolated tWW turn
Not in a motif group
geometric
IL_4WF9_063
IL_54997.7
IL_6WNT_0661/4/1794:1797,
1/4/2121:2122
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_6WNT_0671/4/1797:1802,
1/4/2118:2121
Intercalated tWH
Not in a motif group
geometric
IL_4WF9_065
IL_82842.2
IL_6WNT_0681/4/1814:1819,
1/4/1824:1830
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_7RQB_068
IL_65969.2
IL_6WNT_0691/4/1840:1846,
1/4/1870:1874
tSH-tHW-tWW
Not in a motif group
geometric
IL_5J7L_022
IL_88269.3
IL_6WNT_0701/4/1848:1852,
1/4/1864:1868
Triple sheared
Not in a motif group
geometric
IL_5J7L_310
IL_56467.8
IL_6WNT_0711/4/1898:1899,
1/4/2108:2110
Single bulged A
Not in a motif group
geometric
IL_4WF9_068
IL_37497.3
IL_6WNT_0721/4/1926:1932,
1/4/1941:1949
Kink-turn related
Not in a motif group
geometric
IL_5J7L_313
IL_17069.3
IL_6WNT_0731/4/1965:1968,
1/4/2030:2031
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_5J7L_314
IL_88739.1
IL_6WNT_0741/4/1969:1970,
1/4/2026:2029
Multiple bulged bases
Not in a motif group
geometric
IL_5WLH_001
IL_44546.1
IL_6WNT_0751/4/1974:1977,
1/4/2021:2022
Major groove minor groove platform; mini C-loop
Not in a motif group
geometric
IL_4V9F_068
IL_95601.3
IL_6WNT_0761/4/1992:1995,
1/4/2002:2006
UAA/GAN related
Not in a motif group
geometric
IL_5J7L_317
IL_77691.1
IL_6WNT_0771/4/2061:2062,
1/4/2092:2095
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_318
IL_59677.2
IL_6WNT_0781/4/2062:2073,
1/4/2089:2092
No text annotation
Not in a motif group
geometric
IL_4WF9_077
IL_81589.2
IL_6WNT_0791/4/2178:2180,
1/4/2745:2746
Major groove platform
Not in a motif group
geometric
IL_5J7L_320
IL_27635.2
IL_6WNT_0801/4/2182:2184,
1/4/2740:2743
No text annotation
Not in a motif group
IL_6WNT_0811/4/2195:2197,
1/4/2570:2571
Single bulged U
Not in a motif group
geometric
IL_7RQB_080
IL_83039.14
IL_6WNT_0821/4/2198:2199,
1/4/2566:2569
Minor groove platform
Not in a motif group
geometric
IL_4V9F_075
IL_42622.2
IL_6WNT_0831/4/2209:2211,
1/4/2364:2367
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_5J7L_325
IL_38958.7
IL_6WNT_0841/4/2213:2215,
1/4/2360:2362
No text annotation
Not in a motif group
geometric
IL_5J7L_326
IL_95997.1
IL_6WNT_0851/4/2230:2233,
1/4/2312:2315
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_3TZR_003
IL_30621.3
IL_6WNT_0861/4/2233:2249,
1/4/2305:2312
No text annotation
Not in a motif group
IL_6WNT_0871/4/2330:2332,
1/4/2348:2349
Single bulged U
Not in a motif group
geometric
IL_5J7L_331
IL_83039.14
IL_6WNT_0881/4/2478:2481,
1/4/2492:2495
Double sheared
Not in a motif group
geometric
IL_5J7L_333
IL_09705.9
IL_6WNT_0891/4/2529:2531,
1/4/2542:2543
No text annotation
Not in a motif group
IL_6WNT_0901/4/2594:2598,
1/4/2608:2612
Triple sheared
Not in a motif group
geometric
IL_5J7L_274
IL_56467.8
IL_6WNT_0911/4/2635:2636,
1/4/2708:2710
Major groove platform
Not in a motif group
geometric
IL_4OQU_002
IL_27635.2
IL_6WNT_0921/4/2638:2640,
1/4/2702:2706
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_90933.2
IL_6WNT_0931/4/2640:2641,
1/4/2699:2702
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_6WNT_0941/4/2650:2651,
1/4/2668:2671
Minor groove platform with intercalation
Not in a motif group
geometric
IL_5J7L_342
IL_95601.3
IL_6WNT_0951/4/2719:2720,
1/4/2729:2731
No text annotation
Not in a motif group
IL_6WNT_0961/4/2764:2768,
1/4/2902:2910
No text annotation
Not in a motif group
geometric
IL_5J7L_345
IL_04638.1
IL_6WNT_0971/4/2780:2786,
1/4/2791:2796
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_7RQB_103
IL_16458.1
IL_6WNT_0981/4/2808:2812,
1/4/2853:2855
C-loop
Not in a motif group
geometric
IL_5J7L_347
IL_63596.6
IL_6WNT_0991/4/2815:2819,
1/4/2846:2850
No text annotation
Not in a motif group
geometric
IL_5J7L_348
IL_08296.3
IL_6WNT_1001/4/2823:2824,
1/4/2839:2842
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_349
IL_71530.2
IL_6WNT_1011/4/2865:2870,
1/4/2890:2895
UAA/GAN with extra cWW
Not in a motif group
geometric
IL_5J7L_350
IL_49767.5
IL_6WNT_1021/4/2934:2939,
1/4/3017:3020
No text annotation
Not in a motif group
geometric
IL_5J7L_351
IL_49460.2
IL_6WNT_1031/4/2966:2967,
1/4/3006:3008
Major groove intercalation
Not in a motif group
geometric
IL_4WF9_112
IL_37497.3
IL_6WNT_1041/4/2971:2974,
1/4/2998:3002
Multiple bulged bases with non-canonical cWW
Not in a motif group
geometric
IL_5J7L_353
IL_58764.3
IL_6WNT_1051/4/2975:2980,
1/4/2993:2997
No text annotation
Not in a motif group
geometric
IL_5J7L_354
IL_83162.5

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6WNT_0011/4/30:31,
1/4/474:481,
1/4/509:510
No text annotation
Not in a motif group
J3_6WNT_0021/4/56:57,
1/4/70:76,
1/4/110:114
No text annotation
Not in a motif group
J3_6WNT_0031/4/683:689,
1/4/773:775,
1/4/791:794
No text annotation
Not in a motif group
J3_6WNT_0041/4/698:700,
1/4/732:736,
1/4/760:763
No text annotation
Not in a motif group
J3_6WNT_0051/4/1048:1052,
1/4/1076:1082,
1/4/1134:1136
No text annotation
Not in a motif group
J3_6WNT_0061/4/1183:1187,
1/4/1207:1215,
1/4/1230:1232
No text annotation
Not in a motif group
J3_6WNT_0071/4/1426:1431,
1/4/1753:1755,
1/4/1767:1770
No text annotation
Not in a motif group
J3_6WNT_0081/4/1434:1437,
1/4/1733:1739,
1/4/1748:1750
No text annotation
Not in a motif group
J3_6WNT_0091/4/1472:1477,
1/4/1510:1513,
1/4/1530:1531
No text annotation
Not in a motif group
J3_6WNT_0101/4/2219:2221,
1/4/2324:2328,
1/4/2351:2356
No text annotation
Not in a motif group
J3_6WNT_0111/4/2423:2427,
1/4/2445:2451,
1/4/2460:2465
No text annotation
Not in a motif group
J3_6WNT_0121/4/2645:2648,
1/4/2673:2675,
1/4/2689:2695
No text annotation
Not in a motif group
J3_6WNT_0131/4/2917:2919,
1/4/2933:2934,
1/4/3020:3022
No text annotation
Not in a motif group
J3_6WNT_0141/4/2940:2943,
1/4/2959:2964,
1/4/3010:3016
No text annotation
Not in a motif group

Problematic loops

No problematic loops


Coloring options:
Copyright 2024 BGSU RNA group. Page generated in 0.0966 s