#Varna 2DMotifNtsSize
1
  • IL_97217.13
IL_97217.13
  • Basepair signature: cWW-cWW
  • History status: Updated, 2 parents
  • Name: 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
5298
2
  • IL_83000.1
IL_83000.1
  • Basepair signature: cWW-cWW-cWW
  • History status: > 2 parents
  • Name: cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | cWW AG or water inserted cWW Y-Y. | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | cWH basepair with syn base | cWH basepair with syn base | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
6260
3
  • IL_41766.8
IL_41766.8
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Updated, 1 parent
  • Name: Tandem cWW pairs (Not AU or GC)
870
4
  • IL_39199.6
IL_39199.6
  • Basepair signature: cWW-tHS-cSH-cWW
  • History status: Updated, 1 parent
  • Name: Hoogsteen-edge Platform, Single bulged base
562
5
  • IL_56465.6
IL_56465.6
  • Basepair signature: cWW-R-cWW
  • History status: Updated, 1 parent
  • Name: Single, unpaired intercalated base, consensus A
554
6
  • IL_44540.6
IL_44540.6
  • Basepair signature: cWW-cSH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Sugar-edge, 1-base platform, consensus tHS
551
7
  • IL_82444.3
IL_82444.3
  • Basepair signature: cWW-cWH-cWW
  • History status: Updated, 1 parent
  • Name: cWW AG or UU | cWH basepair with syn base | cWH basepair with syn base | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
638
8
  • IL_87904.7
IL_87904.7
  • Basepair signature: cWW-tSH-tHS-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Triple sheared (tSH-tHS-tHS) no inserted bases
1035
9
  • IL_04465.1
IL_04465.1
  • Basepair signature: cWW-cWW
  • History status: > 2 parents
  • Name: 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | 23S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
531
10
  • IL_13959.6
IL_13959.6
  • Basepair signature: cWW-tSH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Double Sheared (tSH-tHS)
831
11
  • IL_73276.7
IL_73276.7
  • Basepair signature: cWW-tWH-cSH-L-cWS-cWW
  • History status: Updated, 1 parent
  • Name: C-loop
726
12
  • IL_93424.6
IL_93424.6
  • Basepair signature: cWW-tSH-R-tHW-cWW
  • History status: Updated, 1 parent
  • Name: tSH-inserted-tHW
926
13
  • IL_65553.10
IL_65553.10
  • Basepair signature: cWW-cSS-tSS-L-tSH-tSS-tHS-tHW-cWW-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Kink-turn
1324
14
  • IL_92027.5
IL_92027.5
  • Basepair signature: cWW-cSH-cSW-cWW
  • History status: Updated, 1 parent
  • Name: 16S h21 S8 binding site
621
15
  • IL_55938.6
IL_55938.6
  • Basepair signature: cWW-cSH-cWW-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 89 (H89) IL2. cSH Platform.
721
16
  • IL_85647.5
IL_85647.5
  • Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Sarcin-ricin parent motif with 15 Nts
1520
17
  • IL_67813.2
IL_67813.2
  • Basepair signature: cWW-cWS-cWW
  • History status: Updated, 2 parents
  • Name: cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | 16S h34 ILa : Part of larger motif | cWW AG or UU | cWW AG or water inserted cWW Y-Y. | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
619
18
  • IL_24982.7
IL_24982.7
  • Basepair signature: cWW-tSH-tHW-tHS-cWW
  • History status: Updated, 1 parent
  • Name: SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif
1017
19
  • IL_77277.1
IL_77277.1
  • Basepair signature: cWW-cWW-L-cWW
  • History status: > 2 parents
  • Name: 23S H73 ILa : Part of larger Motif | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
716
20
  • IL_46648.8
IL_46648.8
  • Basepair signature: cWW-tSH-cWW
  • History status: Updated, 1 parent
  • Name: 23S H91 IL | Single-Base Intercalation Site
516
21
  • IL_49493.6
IL_49493.6
  • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Sarcin-ricin Parent Motif - bacterial LSU H95 IL
1316
22
  • IL_37104.5
IL_37104.5
  • Basepair signature: cWW-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
715
23
  • IL_94430.7
IL_94430.7
  • Basepair signature: cWW-cSW-cWW
  • History status: Updated, 1 parent
  • Name: 16S h32-h33-h34 3WJ
515
24
  • IL_03128.1
IL_03128.1
  • Basepair signature: cWW-cWW
  • History status: New id, 2 parents
  • Name: 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 23S H41 IL and 16S h18 IL : Has large bulge on one side
514
25
  • IL_31555.6
IL_31555.6
  • Basepair signature: cWW-cWW-tSH-tHS-cWW
  • History status: Exact match
  • Name: Tandem sheared with inserted, unpaired purine. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
913
26
  • IL_21761.1
IL_21761.1
  • Basepair signature: cWW-cWW-tSH-tHS-tHS-cWW
  • History status: New id, 1 parent
  • Name: Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif
1211
27
  • IL_58291.5
IL_58291.5
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
  • Name: Recurrent Sub-motif found in junctions
610
28
  • IL_47444.3
IL_47444.3
  • Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW
  • History status: Exact match
  • Name: SRP Loop E-like motif
129
29
  • IL_92114.3
IL_92114.3
  • Basepair signature: cWW-cSH-tHW-L-cWW
  • History status: Exact match
  • Name: GAAA loop receptor "platform" motif
99
30
  • IL_11015.1
IL_11015.1
  • Basepair signature: cWW-cSH-tHS-cWW
  • History status: New id, 2 parents
  • Name: Single sheared with bulged bases | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases
79
31
  • IL_25549.1
IL_25549.1
  • Basepair signature: cWW-cWW-cWW
  • History status: New id, 2 parents
  • Name: cWW AG or UU | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
69
32
  • IL_02809.3
IL_02809.3
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
89
33
  • IL_84950.1
IL_84950.1
  • Basepair signature: cWW-cWW
  • History status: New id, 2 parents
  • Name: LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 23S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
59
34
  • IL_65554.2
IL_65554.2
  • Basepair signature: cWW-cWW-cSH-cWS-cWW-cWW
  • History status: Updated, 1 parent
  • Name: cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | Tandem sheared with inserted, unpaired purine. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
98
35
  • IL_74856.2
IL_74856.2
  • Basepair signature: cWW-cWW-cSH-R-cWW
  • History status: Updated, 2 parents
  • Name: LSU Helix 89 (H89) IL2
88
36
  • IL_53635.5
IL_53635.5
  • Basepair signature: cWW-R-tHW-tHW-tWW-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 32 (H32) IL
138
37
  • IL_32987.1
IL_32987.1
  • Basepair signature: cWW-L-R-cWW
  • History status: New id, 2 parents
  • Name: cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
67
38
  • IL_97057.4
IL_97057.4
  • Basepair signature: cWW-cWW-tWH-L-tHS-cWW
  • History status: Exact match
117
39
  • IL_93568.4
IL_93568.4
  • Basepair signature: cWW-tSH-tHS-tHS-L-R-cWW
  • History status: Updated, 1 parent
  • Name: Triple Sheared (tSH-tHS-tHS) with wobble cWW.
127
40
  • IL_08926.4
IL_08926.4
  • Basepair signature: cWW-cHH-cWW
  • History status: Exact match
  • Name: 23S H91 IL
57
41
  • IL_70237.5
IL_70237.5
  • Basepair signature: cWW-L-L-cWS-tSW-R-R-cWW
  • History status: Updated, 1 parent
107
42
  • IL_13069.5
IL_13069.5
  • Basepair signature: cWW-cWW
  • History status: Updated, 1 parent
  • Name: LSU 3WJ H32-H33-H35A
87
43
  • IL_73000.2
IL_73000.2
  • Basepair signature: cWW-cSW-cSH-cWW
  • History status: Exact match
  • Name: cHS-cWS
67
44
  • IL_44067.6
IL_44067.6
  • Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW
  • History status: Updated, 1 parent
  • Name: Quadruple sheared (tSH-tHS-tHS-tHS). LSU Helix 2 (H2).
147
45
  • IL_96952.1
IL_96952.1
  • Basepair signature: cWW-L-R-R-L-cWW-cWW
  • History status: New id, 1 parent
  • Name: Double sheared with wobble cWW.
107
46
  • IL_86357.5
IL_86357.5
  • Basepair signature: cWW-tWW-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 61 IL2
67
47
  • IL_64847.1
IL_64847.1
  • Basepair signature: cWW-tSH-tWH-tSH-tHS-cWW
  • History status: Exact match
  • Name: Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
107
48
  • IL_72158.5
IL_72158.5
  • Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 62 (H62) IL
137
49
  • IL_24546.6
IL_24546.6
  • Basepair signature: cWW-L-L-L-cSH-L-cWW
  • History status: Updated, 1 parent
  • Name: 23S H41 IL and 16S h18 IL : Has large bulge on one side
107
50
  • IL_48183.2
IL_48183.2
  • Basepair signature: cWW-tSH-tHW-L-cWW
  • History status: Updated, 2 parents
  • Name: tSH-tHW-bulge
96
51
  • IL_55114.2
IL_55114.2
  • Basepair signature: cWW-L-R-tHS-cWW
  • History status: Updated, 2 parents
  • Name: Double S-turn motif | tHS tHH bulge with S-turn | Double S-turn motif
86
52
  • IL_59745.1
IL_59745.1
  • Basepair signature: cWW-L-cWS-cWW
  • History status: New id, 1 parent
  • Name: Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
76
53
  • IL_25230.4
IL_25230.4
  • Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW
  • History status: Exact match
  • Name: Bacterial 5S rRNA Loop E
186
54
  • IL_90133.5
IL_90133.5
  • Basepair signature: cWW-tHS-cWW-cWW
  • History status: Updated, 1 parent
76
55
  • IL_77263.2
IL_77263.2
  • Basepair signature: cWW-tSS-L-tSH-tHS-cWW
  • History status: Exact match
  • Name: Kink-turn from U4
116
56
  • IL_59864.2
IL_59864.2
  • Basepair signature: cWW-L-L-L-tHS-cWW
  • History status: Updated, 1 parent
96
57
  • IL_16029.2
IL_16029.2
  • Basepair signature: cWW-cWW-cWW
  • History status: Updated, 1 parent
  • Name: cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
66
58
  • IL_02359.5
IL_02359.5
  • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
  • History status: Updated, 1 parent
166
59
  • IL_82188.3
IL_82188.3
  • Basepair signature: cWW-tSH-L-R-R-R-R-L-L-L-cWW
  • History status: Updated, 1 parent
  • Name: LSU H68 IL from H.m.
146
60
  • IL_28572.3
IL_28572.3
  • Basepair signature: cWW-tWH-cSW-L-R-R-L-tHS-cWW
  • History status: Updated, 1 parent
  • Name: 16S h18 kink-turn like motif
165
61
  • IL_34363.3
IL_34363.3
  • Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-R-R-L-cWW
  • History status: Updated, 1 parent
  • Name: Kink-turn from 23S H42
145
62
  • IL_15123.2
IL_15123.2
  • Basepair signature: cWW-L-R-cHW-L-L-L-L-L-cWW
  • History status: Updated, 1 parent
  • Name: Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th.
165
63
  • IL_87065.3
IL_87065.3
  • Basepair signature: cWW-cSH-cWW
  • History status: Updated, 1 parent
  • Name: 23S H91 IL | Single-Base Intercalation Site
75
64
  • IL_21427.1
IL_21427.1
  • Basepair signature: cWW-R-tWH-tHS-cWW
  • History status: New id, 2 parents
  • Name: tHS tHH bulge with S-turn | tSH-inserted-tHS
95
65
  • IL_31066.4
IL_31066.4
  • Basepair signature: cWW-R-cWW
  • History status: Updated, 1 parent
  • Name: SSU Helix 44 (h44) extension
75
66
  • IL_01080.2
IL_01080.2
  • Basepair signature: cWW-R-cWW
  • History status: Updated, 2 parents
75
67
  • IL_95652.4
IL_95652.4
  • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW
  • History status: Updated, 1 parent
  • Name: SSU Helix 27 (h27) IL Sarcin-Ricin motif
145
68
  • IL_09698.1
IL_09698.1
  • Basepair signature: cWW-cWW
  • History status: New id, 2 parents
  • Name: 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL
55
69
  • IL_79083.4
IL_79083.4
  • Basepair signature: cWW-tSH-L-R-L-tHH-cWW
  • History status: Exact match
115
70
  • IL_47758.3
IL_47758.3
  • Basepair signature: cWW-cHW-cWW-cWW
  • History status: Updated, 1 parent
  • Name: REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
85
71
  • IL_71229.1
IL_71229.1
  • Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW
  • History status: Exact match
165
72
  • IL_39980.2
IL_39980.2
  • Basepair signature: cWW-L-cSH-cWW
  • History status: Updated, 1 parent
85
73
  • IL_04397.1
IL_04397.1
  • Basepair signature: cWW-tWH-L-tHW-cSH-cWW
  • History status: Exact match
125
74
  • IL_30840.3
IL_30840.3
  • Basepair signature: cWW-cWW-L-R-L-cWW-cWW
  • History status: Updated, 1 parent
114
75
  • IL_98601.1
IL_98601.1
  • Basepair signature: cWW-R-R-cWW
  • History status: New id, 2 parents
64
76
  • IL_19493.1
IL_19493.1
  • Basepair signature: cWW-L-cWW-cWW
  • History status: > 2 parents
  • Name: Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
84
77
  • IL_98421.6
IL_98421.6
  • Basepair signature: cWW-tHH-L-L-cWW
  • History status: Updated, 1 parent
  • Name: SSU Helix 12 (h12) IL | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1
74
78
  • IL_49668.1
IL_49668.1
  • Basepair signature: cWW-L-cSH-cWW
  • History status: New id, 2 parents
64
79
  • IL_37053.2
IL_37053.2
  • Basepair signature: cWW-tSH-L-R-tHS-tSS-L-R-cWW
  • History status: Updated, 1 parent
  • Name: Kink-turn from 23S H58
134
80
  • IL_83339.1
IL_83339.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: New id, 2 parents
74
81
  • IL_69536.3
IL_69536.3
  • Basepair signature: cWW-tSH-R-R-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 96 (H96) IL2
104
82
  • IL_09530.3
IL_09530.3
  • Basepair signature: cWW-cWH-L-R-cWW
  • History status: Updated, 1 parent
  • Name: Double S-turn motif
104
83
  • IL_32261.2
IL_32261.2
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 89 (H89) IL2
94
84
  • IL_48918.3
IL_48918.3
  • Basepair signature: cWW-tSH-tSH-tHS-tSS-R-cWW
  • History status: Exact match
  • Name: Kink-turn variant
134
85
  • IL_22658.1
IL_22658.1
  • Basepair signature: cWW-L-R-cWW
  • History status: New id, 2 parents
  • Name: Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
64
86
  • IL_16166.5
IL_16166.5
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
  • Name: 23S H91 IL
54
87
  • IL_89252.2
IL_89252.2
  • Basepair signature: cWW-cWW-L-R-R-tHW-bif-cWW
  • History status: Updated, 1 parent
134
88
  • IL_39526.4
IL_39526.4
  • Basepair signature: cWW-L-L-L-L-L-cWW
  • History status: Exact match
94
89
  • IL_12211.2
IL_12211.2
  • Basepair signature: cWW-L-R-R-R-L-L-cWW-cWW
  • History status: Updated, 1 parent
133
90
  • IL_74876.2
IL_74876.2
  • Basepair signature: cWW-tWH-L-R-tHS-cWW
  • History status: Exact match
  • Name: Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
103
91
  • IL_70089.1
IL_70089.1
  • Basepair signature: cWW-L-R-R-cWW-cWW
  • History status: New id, 2 parents
103
92
  • IL_94519.1
IL_94519.1
  • Basepair signature: cWW-tWH-tHH-tHS-cWW
  • History status: New id, 2 parents
113
93
  • IL_43946.1
IL_43946.1
  • Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW
  • History status: Exact match
123
94
  • IL_37197.2
IL_37197.2
  • Basepair signature: cWW-L-L-L-tHS-cWW-cWW
  • History status: Updated, 1 parent
113
95
  • IL_38328.1
IL_38328.1
  • Basepair signature: cWW-cWW-bif-R-cWW
  • History status: > 2 parents
  • Name: cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | Tandem sheared with inserted, unpaired purine. | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
93
96
  • IL_07300.2
IL_07300.2
  • Basepair signature: cWW-cSH-L-cWW-cWW
  • History status: Exact match
93
97
  • IL_72641.2
IL_72641.2
  • Basepair signature: cWW-L-R-cWW
  • History status: Updated, 1 parent
  • Name: cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
63
98
  • IL_62499.9
IL_62499.9
  • Basepair signature: cWW-cSS-L-R-R-cWW
  • History status: Updated, 2 parents
103
99
  • IL_45794.2
IL_45794.2
  • Basepair signature: cWW-R-tSS-tWW-tWW-cWW
  • History status: Updated, 1 parent
143
100
  • IL_26910.1
IL_26910.1
  • Basepair signature: cWW-cSS-L-cWW
  • History status: > 2 parents
  • Name: 23S H91 IL
63
101
  • IL_79955.2
IL_79955.2
  • Basepair signature: cWW-cWW-cWW-cWW-cSW-cWW
  • History status: Exact match
  • Name: SSU Helix (23) h23 IL1
123
102
  • IL_25271.2
IL_25271.2
  • Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW
  • History status: Exact match
  • Name: SSU Helix 8 (h8) IL E.c. and Yeast
153
103
  • IL_37171.1
IL_37171.1
  • Basepair signature: cWW-cWW-tSH-L-R-cWW-cWW
  • History status: Exact match
  • Name: LSU H58 IL2 H.m.
123
104
  • IL_40892.2
IL_40892.2
  • Basepair signature: cWW-cWS-L-L-cWW
  • History status: Updated, 1 parent
113
105
  • IL_94403.6
IL_94403.6
  • Basepair signature: cWW-L-L-tWH-L-L-L-cWW
  • History status: Exact match
  • Name: LSU H77
123
106
  • IL_68668.1
IL_68668.1
  • Basepair signature: cWW-L-cWW
  • History status: New id, 2 parents
53
107
  • IL_05723.2
IL_05723.2
  • Basepair signature: cWW-R-cSH-tWH-tHS-cWW
  • History status: Exact match
103
108
  • IL_45592.1
IL_45592.1
  • Basepair signature: cWW-L-cWW
  • History status: New id, 2 parents
  • Name: 23S H91 IL
53
109
  • IL_77076.2
IL_77076.2
  • Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-cWW
  • History status: Updated, 1 parent
183
110
  • IL_81597.1
IL_81597.1
  • Basepair signature: cWW-cSW-tHS-cWW
  • History status: New id, 2 parents
  • Name: SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1. | tSH-tHW-bulge
93
111
  • IL_51247.1
IL_51247.1
  • Basepair signature: cWW-tSH-tHW-L-R-R-R-L-L-cWW
  • History status: New id, no parents
143
112
  • IL_82563.1
IL_82563.1
  • Basepair signature: cWW-R-tWH-R-R-R-cWW
  • History status: Exact match
  • Name: Thi-box riboswitch T-loop
103
113
  • IL_12204.2
IL_12204.2
  • Basepair signature: cWW-tWW-L-tWW-tWH-cWW
  • History status: Updated, 1 parent
143
114
  • IL_06211.3
IL_06211.3
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
93
115
  • IL_03337.1
IL_03337.1
  • Basepair signature: cWW-tSH-R-tHS-cWW
  • History status: New id, 2 parents
  • Name: tSH-inserted-tHS
93
116
  • IL_34628.2
IL_34628.2
  • Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn
133
117
  • IL_06413.1
IL_06413.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: New id, 2 parents
  • Name: LSU Helix 89 (H89) IL2 | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1
82
118
  • IL_03362.1
IL_03362.1
  • Basepair signature: cWW-tSS-tWW-L-tSH-R-R-cWW
  • History status: New id, no parents
132
119
  • IL_90877.1
IL_90877.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
82
120
  • IL_59563.1
IL_59563.1
  • Basepair signature: cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
  • History status: New id, 1 parent
  • Name: Sarcin-ricin motif with syn G
152
121
  • IL_21495.1
IL_21495.1
  • Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW
  • History status: Exact match
152
122
  • IL_65137.1
IL_65137.1
  • Basepair signature: cWW-L-cSS-tWH-tHW-L-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn like motif in Group I Intron
132
123
  • IL_97833.1
IL_97833.1
  • Basepair signature: cWW-cSW-tSH-tWH-tHW-tHS-cWW-cWW
  • History status: Exact match
142
124
  • IL_38207.1
IL_38207.1
  • Basepair signature: cWW-cWW-L-cWW
  • History status: New id, 2 parents
  • Name: 23S H73 ILa : Part of larger Motif | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases | Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
72
125
  • IL_70401.1
IL_70401.1
  • Basepair signature: cWW-L-L-tWW-L-L-L-cWW
  • History status: Exact match
112
126
  • IL_30381.1
IL_30381.1
  • Basepair signature: cWW-cWW-L-R-cWW
  • History status: Exact match
  • Name: tHS tHH bulge with S-turn
82
127
  • IL_76095.3
IL_76095.3
  • Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-cWW-cWW
  • History status: Exact match
  • Name: Motif from Hairpin Ribozyme
202
128
  • IL_09587.1
IL_09587.1
  • Basepair signature: cWW-cWW-L-R-R-L-L-cWW
  • History status: Exact match
112
129
  • IL_52940.1
IL_52940.1
  • Basepair signature: cWW-L-R-R-R-R-L-L-L-tWW-cWW
  • History status: Exact match
142
130
  • IL_67024.1
IL_67024.1
  • Basepair signature: cWW-R-R-R-tSW-L-cWW
  • History status: Exact match
112
131
  • IL_33842.1
IL_33842.1
  • Basepair signature: cWW-cSH-L-cWS-cWW
  • History status: Exact match
92
132
  • IL_00734.1
IL_00734.1
  • Basepair signature: cWW-L-R-R-R-L-cWW
  • History status: New id, 2 parents
92
133
  • IL_49445.1
IL_49445.1
  • Basepair signature: cWW-L-R-R-R-L-L-cWW
  • History status: New id, 1 parent
  • Name: Triple sheared (tSH-tHS-tHS) no inserted bases
102
134
  • IL_92576.1
IL_92576.1
  • Basepair signature: cWW-L-R-cWW
  • History status: Exact match
92
135
  • IL_14901.1
IL_14901.1
  • Basepair signature: cWW-L-R-R-R-L-cWW
  • History status: New id, 2 parents
  • Name: tHS tHH bulge with S-turn
92
136
  • IL_80494.3
IL_80494.3
  • Basepair signature: cWW-tWH-L-R-tHS-bif-cWW
  • History status: Exact match
  • Name: LSU H58 IL2 H.m.
132
137
  • IL_30323.1
IL_30323.1
  • Basepair signature: cWW-R-cWW
  • History status: New id, 1 parent
  • Name: 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
52
138
  • IL_39439.1
IL_39439.1
  • Basepair signature: cWW-L-R-R-R-L-L-cWW
  • History status: New id, 1 parent
102
139
  • IL_95908.2
IL_95908.2
  • Basepair signature: cWW-R-R-cWW
  • History status: Updated, 1 parent
  • Name: LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
72
140
  • IL_78744.1
IL_78744.1
  • Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW
  • History status: Exact match
  • Name: Quadruple Sheared (tSH-tSH-tHS-tHS)
122
141
  • IL_28003.2
IL_28003.2
  • Basepair signature: cWW-cSH-tHW-cWW
  • History status: Exact match
92
142
  • IL_16415.3
IL_16415.3
  • Basepair signature: cWW-L-R-R-L-tWH-tHS-tSS-tSS-R-cWW
  • History status: Exact match
  • Name: SSU Helix 23 (h23) Kink-turn T. thermophilus
152
143
  • IL_25541.1
IL_25541.1
  • Basepair signature: cWW-tSH-L-R-R-R-L-cWW
  • History status: Exact match
  • Name: Triple Sheared with unpaired, inserted A
112
144
  • IL_23414.1
IL_23414.1
  • Basepair signature: cWW-L-R-R-R-cSH-R-bif-tWH-R-R-R-R-R-L-cWW
  • History status: Exact match
212
145
  • IL_90735.1
IL_90735.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW
  • History status: Exact match
172
146
  • IL_11751.1
IL_11751.1
  • Basepair signature: cWW-L-L-L-cWW
  • History status: Exact match
72
147
  • IL_69106.3
IL_69106.3
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Updated, 1 parent
  • Name: Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
72
148
  • IL_31707.1
IL_31707.1
  • Basepair signature: cWW-L-L-L-cWW-L-bif-cWW
  • History status: Exact match
  • Name: Vitamin B12 aptamer
112
149
  • IL_60613.1
IL_60613.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
82
150
  • IL_50521.1
IL_50521.1
  • Basepair signature: cWW-tSH-cWH-tWH-tSS-tHW-L-cWW
  • History status: Exact match
152
151
  • IL_09882.1
IL_09882.1
  • Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW
  • History status: Exact match
122
152
  • IL_94744.1
IL_94744.1
  • Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with extra cWW GA pair
172
153
  • IL_40041.1
IL_40041.1
  • Basepair signature: cWW-R-cWW
  • History status: New id, 2 parents
62
154
  • IL_98172.1
IL_98172.1
  • Basepair signature: cWW-L-R-R-L-L-cSS-L-cWW-cWW
  • History status: New id, 1 parent
172
155
  • IL_87548.1
IL_87548.1
  • Basepair signature: cWW-tSH-tHW-L-cSH-R-cWW
  • History status: Exact match
112
156
  • IL_37914.1
IL_37914.1
  • Basepair signature: cWW-tWH-L-cWS-cWW-cWW
  • History status: New id, 1 parent
112
157
  • IL_46435.1
IL_46435.1
  • Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW
  • History status: Exact match
132
158
  • IL_17204.1
IL_17204.1
  • Basepair signature: cWW-L-R-R-R-L-cWW
  • History status: New id, 1 parent
  • Name: tHS tHH bulge with S-turn
112
159
  • IL_96446.1
IL_96446.1
  • Basepair signature: cWW-R-R-tWH-L-R-cWW
  • History status: Exact match
112
160
  • IL_39175.1
IL_39175.1
  • Basepair signature: cWW-R-R-R-R-R-cWW
  • History status: Exact match
92
161
  • IL_03252.1
IL_03252.1
  • Basepair signature: cWW-R-R-cWW
  • History status: New id, 1 parent
82
162
  • IL_21639.1
IL_21639.1
  • Basepair signature: cWW-L-tWH-R-R-R-cWW
  • History status: Exact match
92
163
  • IL_56250.1
IL_56250.1
  • Basepair signature: cWW-L-R-tHS-cWW
  • History status: New id, 2 parents
  • Name: tHS tHH bulge with S-turn
92
164
  • IL_16330.1
IL_16330.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
282
165
  • IL_67128.1
IL_67128.1
  • Basepair signature: cWW-tSH-L-L-tHH-cWW
  • History status: New id, 1 parent
112
166
  • IL_18783.1
IL_18783.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: New id, 1 parent
82
167
  • IL_98073.1
IL_98073.1
  • Basepair signature: cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
  • History status: New id, 1 parent
  • Name: Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11.
172
168
  • IL_05641.1
IL_05641.1
  • Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW
  • History status: Exact match
232
169
  • IL_95150.7
IL_95150.7
  • Basepair signature: cWW-cHW-tHS-cWW
  • History status: Exact match
82
170
  • IL_19451.1
IL_19451.1
  • Basepair signature: cWW-cSW-tWH-cSH-L-cWS-R-cWW
  • History status: New id, 1 parent
102
171
  • IL_92422.1
IL_92422.1
  • Basepair signature: cWW-L-L-L-L-cWW
  • History status: Exact match
112
172
  • IL_03110.1
IL_03110.1
  • Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW
  • History status: Exact match
131
173
  • IL_82650.1
IL_82650.1
  • Basepair signature: cWW-cWS-tSH-tHS-L-R-L-cWW
  • History status: Exact match
131
174
  • IL_55649.1
IL_55649.1
  • Basepair signature: cWW-tWH-L-R-cWW
  • History status: Exact match
91
175
  • IL_91044.1
IL_91044.1
  • Basepair signature: cWW-L-R-tHW-cWW
  • History status: Exact match
111
176
  • IL_66744.1
IL_66744.1
  • Basepair signature: cWW-L-R-R-L-L-L-L-cWW-cWW
  • History status: Exact match
  • Name: SSU Helix 21 (h21) IL2 E.coli
141
177
  • IL_20775.1
IL_20775.1
  • Basepair signature: cWW-R-tHS-cWW
  • History status: Exact match
  • Name: tSH-inserted
81
178
  • IL_43284.1
IL_43284.1
  • Basepair signature: cWW-R-cWW-cWH-L-L-L-cWW
  • History status: New id, 1 parent
  • Name: cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWH basepair with syn base | cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
91
179
  • IL_52610.1
IL_52610.1
  • Basepair signature: cWW-tSS-tSH-L-L-L-L-cWW-L-L-L-L-L-L-L-L-cSS-L-L-L-cSW-cWW-L-cWW-R-tSH-R-R-R-R
  • History status: Exact match
371
180
  • IL_85805.1
IL_85805.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
91
181
  • IL_88865.1
IL_88865.1
  • Basepair signature: cWW-L-cSH-L-cWW
  • History status: Exact match
91
182
  • IL_02897.1
IL_02897.1
  • Basepair signature: cWW-L-R-cWW-L-L-tSW-L-cWW
  • History status: Exact match
  • Name: Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th.
161
183
  • IL_25420.1
IL_25420.1
  • Basepair signature: cWW-tSH-tWH-tWH-L-R-R-L-L-tSH-cWW
  • History status: Exact match
161
184
  • IL_26971.1
IL_26971.1
  • Basepair signature: cWW-tSH-L-R-R-R-L-cWW
  • History status: Exact match
111
185
  • IL_25926.1
IL_25926.1
  • Basepair signature: cWW-L-R-cWW-cWW-L-R-R-R-R-L-L-L-L-cWW
  • History status: New id, no parents
191
186
  • IL_27640.1
IL_27640.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-L-tHS-cWW
  • History status: Exact match
151
187
  • IL_86981.1
IL_86981.1
  • Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.
151
188
  • IL_06177.1
IL_06177.1
  • Basepair signature: cWW-L-R-cWW
  • History status: Exact match
  • Name: cWW AG or UU
61
189
  • IL_91379.1
IL_91379.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-L-cWW
  • History status: Exact match
121
190
  • IL_82601.1
IL_82601.1
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: Tandem cWW water-inserted CU pairs
81
191
  • IL_06847.1
IL_06847.1
  • Basepair signature: cWW-R-cSW-R-R-tHS-cWW
  • History status: Exact match
  • Name: Group II Intron IL
131
192
  • IL_51572.1
IL_51572.1
  • Basepair signature: cWW-R-R-R-R-R-R-tWS-R-R-R-R-R-R-R-R-R-R-R-R-cWW
  • History status: New id, no parents
241
193
  • IL_41516.1
IL_41516.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
101
194
  • IL_59934.1
IL_59934.1
  • Basepair signature: cWW-tSH-tWH-tHS-R-R-cWW
  • History status: Exact match
  • Name: SSU Helix 23 (h23) Kink-turn E. coli
131
195
  • IL_06808.1
IL_06808.1
  • Basepair signature: cWW-tSH-tHS-cWW
  • History status: Exact match
  • Name: Double sheared (tSH-tSH) one bulged base.
91
196
  • IL_97842.1
IL_97842.1
  • Basepair signature: cWW-R-R-R-R-cWS-cWW-cWW-L-R-cWW
  • History status: Exact match
161
197
  • IL_96920.1
IL_96920.1
  • Basepair signature: cWW-cSH-tWH-L-cWW
  • History status: Exact match
  • Name: SSU Helix 12 (h12) IL
71
198
  • IL_87394.1
IL_87394.1
  • Basepair signature: cWW-L-R-R-R-R-R-cWW
  • History status: Exact match
101
199
  • IL_83250.1
IL_83250.1
  • Basepair signature: cWW-tWH-R-R-R-cSH-cWW-cWW
  • History status: Exact match
  • Name: 16S h40 3WJ T.th.
111
200
  • IL_31006.1
IL_31006.1
  • Basepair signature: cWW-tSH-tHW-L-bif-cWW
  • History status: Exact match
  • Name: tSH-tHW-L-bif-cWW
121
201
  • IL_77014.1
IL_77014.1
  • Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW
  • History status: Exact match
111
202
  • IL_70529.1
IL_70529.1
  • Basepair signature: cWW-cWW-L-R-cWW-L-R-R-R-L-L-tHS-R-R-cWW
  • History status: New id, no parents
211
203
  • IL_09333.1
IL_09333.1
  • Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW
  • History status: Exact match
  • Name: SSU Helix 8 (h8) IL T. thermophilus
131
204
  • IL_39324.1
IL_39324.1
  • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW
  • History status: Exact match
201
205
  • IL_28644.1
IL_28644.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
61
206
  • IL_57359.1
IL_57359.1
  • Basepair signature: cWW-L-L-L-L-cWW
  • History status: New id, 1 parent
  • Name: 23S H91 IL
81
207
  • IL_17682.1
IL_17682.1
  • Basepair signature: cWW-L-R-tSH-tHW-cSH-tHH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif from Eukaryal LSU Helix 11
171
208
  • IL_79910.1
IL_79910.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: New id, 1 parent
71
209
  • IL_02835.1
IL_02835.1
  • Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
131
210
  • IL_54450.1
IL_54450.1
  • Basepair signature: cWW-L-R-cWW-cWW
  • History status: Exact match
81
211
  • IL_37347.1
IL_37347.1
  • Basepair signature: cWW-cHW-L-tHW-tHW-tHW-bif-cWW
  • History status: Exact match
161
212
  • IL_87523.1
IL_87523.1
  • Basepair signature: cWW-R-R-R-R-tHS-cWW
  • History status: Exact match
111
213
  • IL_42891.1
IL_42891.1
  • Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW
  • History status: Exact match
161
214
  • IL_86059.1
IL_86059.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
71
215
  • IL_75328.1
IL_75328.1
  • Basepair signature: cWW-L-R-R-R-L-L-cSS-tSS-cWW
  • History status: Exact match
141
216
  • IL_48036.1
IL_48036.1
  • Basepair signature: cWW-L-R-L-L-L-cWW
  • History status: New id, no parents
101
217
  • IL_21254.1
IL_21254.1
  • Basepair signature: cWW-tWH-cWW-tHS-tSS-R-R-cWW
  • History status: Exact match
  • Name: SSU Helix 11 (h11) IL Kink-turn T. thermophilus
141
218
  • IL_15205.1
IL_15205.1
  • Basepair signature: cWW-cWW-L-cSW-L-tHS-cWW
  • History status: Exact match
131
219
  • IL_60649.1
IL_60649.1
  • Basepair signature: cWW-cSS-L-L-L-tSS-tHW-L-R-cWW
  • History status: Exact match
  • Name: Kink-turn
131
220
  • IL_02257.1
IL_02257.1
  • Basepair signature: cWW-tSH-tHH-tHS-cWW
  • History status: New id, 1 parent
111
221
  • IL_41027.1
IL_41027.1
  • Basepair signature: cWW-bif-R-cSH-tWH-tHS-cWW
  • History status: Exact match
121
222
  • IL_06468.1
IL_06468.1
  • Basepair signature: cWW-tWH-R-R-R-cWW-cWW
  • History status: Exact match
  • Name: 16S h40 3WJ E.c.
111
223
  • IL_05221.1
IL_05221.1
  • Basepair signature: cWW-cWW-bif-tHW-cWH-tSW-cSH-cWH-cSH-tHS-cWW
  • History status: Exact match
171
224
  • IL_89794.1
IL_89794.1
  • Basepair signature: cWW-tSH-tSH-tSS-tSS-R-cWW
  • History status: Exact match
141
225
  • IL_99937.1
IL_99937.1
  • Basepair signature: cWW-R-R-tWS-L-R-cWW
  • History status: Exact match
111
226
  • IL_61352.1
IL_61352.1
  • Basepair signature: cWW-tHS-R-cWW-cWW-L-R-cWW
  • History status: New id, no parents
121
227
  • IL_05513.1
IL_05513.1
  • Basepair signature: cWW-L-L-L-tWH-L-L-L-cWW
  • History status: Exact match
121
228
  • IL_76263.1
IL_76263.1
  • Basepair signature: cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW
  • History status: Exact match
191
229
  • IL_83920.1
IL_83920.1
  • Basepair signature: cWW-cWW-L-cWW
  • History status: Exact match
71
230
  • IL_06306.1
IL_06306.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-R-L-cWW
  • History status: Exact match
141
231
  • IL_85510.1
IL_85510.1
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
111
232
  • IL_77296.1
IL_77296.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW
  • History status: Exact match
151
233
  • IL_80714.1
IL_80714.1
  • Basepair signature: cWW-tSH-L-R-R-L-L-L-cWW
  • History status: Exact match
121
234
  • IL_47687.1
IL_47687.1
  • Basepair signature: cWW-tWH-tWH-tWH-L-R-L-tWW-cWW
  • History status: Exact match
141
235
  • IL_68457.1
IL_68457.1
  • Basepair signature: cWW-R-tWH-tHS-cWW
  • History status: New id, 1 parent
  • Name: tSH-inserted-tHS
91
236
  • IL_21077.1
IL_21077.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
101
237
  • IL_57977.1
IL_57977.1
  • Basepair signature: cWW-tSH-L-R-L-tHS-cWW
  • History status: Exact match
111
238
  • IL_99784.1
IL_99784.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: New id, 1 parent
81
239
  • IL_98655.1
IL_98655.1
  • Basepair signature: cWW-L-cHW-L-L-tHH-tSW-L-cWW
  • History status: Exact match
  • Name: Part of H71 Junction in 26S rRNA from Yeast
161
240
  • IL_35267.1
IL_35267.1
  • Basepair signature: cWW-bif-L-cWH-cWS-cWW-R-R-R-cWW
  • History status: New id, no parents
181
241
  • IL_40364.1
IL_40364.1
  • Basepair signature: cWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW
  • History status: New id, no parents
261
242
  • IL_80652.1
IL_80652.1
  • Basepair signature: cWW-R-cSH-tWH-tSH-tHS-cWW
  • History status: Exact match
141
243
  • IL_81398.1
IL_81398.1
  • Basepair signature: cWW-L-R-cWW-cWW-cWW
  • History status: Exact match
101
244
  • IL_88367.1
IL_88367.1
  • Basepair signature: cWW-bif-R-cSH-tWH-tHS-L-R-tSH-cWW
  • History status: Exact match
151
245
  • IL_03282.1
IL_03282.1
  • Basepair signature: cWW-tHW-tHS-cWW-cWW
  • History status: Exact match
101
246
  • IL_45432.1
IL_45432.1
  • Basepair signature: cWW-tSH-tHW-tWH-L-R-R-L-cWW
  • History status: Exact match
161
247
  • IL_46151.1
IL_46151.1
  • Basepair signature: cWW-tSH-tSH-tHS-bif-cWW
  • History status: Exact match
  • Name: Triple Sheared with unpaired, inserted A
111
248
  • IL_98924.1
IL_98924.1
  • Basepair signature: cWW-L-L-L-cWW-cWW
  • History status: Exact match
101
249
  • IL_49527.1
IL_49527.1
  • Basepair signature: cWW-R-R-cWW-cWW-cWW
  • History status: Exact match
101
250
  • IL_92886.1
IL_92886.1
  • Basepair signature: cWW-cWW-cWW
  • History status: New id, 1 parent
  • Name: cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
61
251
  • IL_53988.1
IL_53988.1
  • Basepair signature: cWW-cSW-L-L-tHS-cWS-cWW
  • History status: Exact match
131
252
  • IL_73367.1
IL_73367.1
  • Basepair signature: cWW-L-R-cSH-R-L-cWW
  • History status: New id, no parents
121
253
  • IL_23302.1
IL_23302.1
  • Basepair signature: cWW-R-R-R-R-cWW
  • History status: Exact match
91
254
  • IL_68827.1
IL_68827.1
  • Basepair signature: cWW-tSH-tHH-R-R-R-cWW
  • History status: Exact match
  • Name: Reverse Kink-Turn
111
255
  • IL_31754.1
IL_31754.1
  • Basepair signature: cWW-cSW-tHW-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin H95 23S rRNA E.c.
131
256
  • IL_40527.1
IL_40527.1
  • Basepair signature: cWW-L-R-tSS-L-tSH-L-R-L-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn
161
257
  • IL_94973.1
IL_94973.1
  • Basepair signature: cWW-L-R-L-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-Ricin from Group II Intron with inserted base and poor modeling:
141
258
  • IL_62296.1
IL_62296.1
  • Basepair signature: cWW-tSS-cSS-cWW-L-R-R-L-L-L-cWW
  • History status: Exact match
151
259
  • IL_72367.1
IL_72367.1
  • Basepair signature: cWW-cSH-cWW-cWW
  • History status: New id, 1 parent
71
260
  • IL_71685.1
IL_71685.1
  • Basepair signature: cWW-cWW-bif-R-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-like with an intercalated basepair
141
261
  • IL_57079.1
IL_57079.1
  • Basepair signature: cWW-tSS-cSS-L-cSS-R-L-cWW
  • History status: New id, 1 parent
131
262
  • IL_63133.1
IL_63133.1
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
  • Name: Single sheared with bulged bases | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
61
263
  • IL_75415.1
IL_75415.1
  • Basepair signature: cWW-L-L-L-L-L-L-cWW
  • History status: Exact match
  • Name: Pseudo-knot forming internal loop
101
264
  • IL_89463.1
IL_89463.1
  • Basepair signature: cWW-tSS-cSS-L-R-R-L-L-L-L-cWW
  • History status: New id, no parents
131
265
  • IL_72293.1
IL_72293.1
  • Basepair signature: cWW-tSH-R-tHH-tHS-cWW
  • History status: Exact match
121
266
  • IL_97191.1
IL_97191.1
  • Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with cWW UU instead of tSH basepair.
131
267
  • IL_86060.1
IL_86060.1
  • Basepair signature: cWW-L-cWW
  • History status: New id, 1 parent
61
268
  • IL_41139.1
IL_41139.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
81
269
  • IL_57285.1
IL_57285.1
  • Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW
  • History status: Exact match
131
270
  • IL_23639.1
IL_23639.1
  • Basepair signature: cWW-tWH-tHS-L-cWW
  • History status: Exact match
  • Name: tWH-tHS-L-cWW
101
271
  • IL_22953.1
IL_22953.1
  • Basepair signature: cWW-cWW-cWW
  • History status: New id, 1 parent
  • Name: Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
61
272
  • IL_36006.1
IL_36006.1
  • Basepair signature: cWW-cWW-L-cWW
  • History status: Exact match
81
273
  • IL_65681.1
IL_65681.1
  • Basepair signature: cWW-cSW-L-R-cWW
  • History status: New id, no parents
81
274
  • IL_54696.1
IL_54696.1
  • Basepair signature: cWW-L-R-R-cWS-cWW
  • History status: New id, 1 parent
  • Name: SSU Decoding Site -- Human. Bulge-cSW-tHS | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | Tandem sheared with inserted, unpaired purine. | cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
91
275
  • IL_22909.1
IL_22909.1
  • Basepair signature: cWW-L-cSH-R-R-R-cWW
  • History status: Exact match
91
276
  • IL_52509.1
IL_52509.1
  • Basepair signature: cWW-cWW-L-L-tHS-cWW
  • History status: Exact match
101
277
  • IL_25082.1
IL_25082.1
  • Basepair signature: cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW
  • History status: Exact match
181
278
  • IL_40845.1
IL_40845.1
  • Basepair signature: cWW-cSW-cSH-R-cWW
  • History status: Exact match
81
279
  • IL_27243.1
IL_27243.1
  • Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW
  • History status: Exact match
151
280
  • IL_59907.1
IL_59907.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
  • History status: New id, no parents
281
281
  • IL_08114.1
IL_08114.1
  • Basepair signature: cWW-cWW-cWW
  • History status: New id, no parents
61
282
  • IL_63253.1
IL_63253.1
  • Basepair signature: cWW-R-R-cWW
  • History status: Exact match
  • Name: LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
71
283
  • IL_12507.1
IL_12507.1
  • Basepair signature: cWW-cSS-cSS-R-R-L-L-L-cWW
  • History status: Exact match
131
284
  • IL_52958.1
IL_52958.1
  • Basepair signature: cWW-L-R-R-L-L-cWW
  • History status: Exact match
101
285
  • IL_91078.1
IL_91078.1
  • Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW
  • History status: Exact match
141
286
  • IL_02957.1
IL_02957.1
  • Basepair signature: cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW
  • History status: Exact match
261
287
  • IL_58270.1
IL_58270.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-R-R-R-R-R-R-R-R-cWW
  • History status: New id, no parents
191
288
  • IL_26448.1
IL_26448.1
  • Basepair signature: cWW-R-R-R-tSW-L-L-cWW
  • History status: Exact match
111
289
  • IL_63952.1
IL_63952.1
  • Basepair signature: cWW-L-R-R-tHW-tHW-L-R-cWW
  • History status: Exact match
131
290
  • IL_26868.1
IL_26868.1
  • Basepair signature: cWW-tSH-tHW-tWW-cWW
  • History status: Exact match
111
291
  • IL_27668.1
IL_27668.1
  • Basepair signature: cWW-L-L-L-L-L-tHS-cWW
  • History status: Exact match
121
292
  • IL_29989.1
IL_29989.1
  • Basepair signature: cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW
  • History status: New id, 1 parent
251
293
  • IL_03808.1
IL_03808.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-cWW
  • History status: Exact match
131
294
  • IL_07252.1
IL_07252.1
  • Basepair signature: cWW-cWH-L-R-cWW
  • History status: New id, no parents
81
295
  • IL_16921.1
IL_16921.1
  • Basepair signature: cWW-cSH-L-L-L-cWW-cWW
  • History status: Exact match
131
296
  • IL_80505.1
IL_80505.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-cWW
  • History status: Exact match
111
297
  • IL_86336.1
IL_86336.1
  • Basepair signature: cWW-L-R-L-L-L-cWW
  • History status: Exact match
101
298
  • IL_23448.1
IL_23448.1
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
61
299
  • IL_78513.1
IL_78513.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
101
300
  • IL_73656.1
IL_73656.1
  • Basepair signature: cWW-L-R-R-R-L-L-L-L-cWW-cWW
  • History status: Exact match
151
301
  • IL_11302.1
IL_11302.1
  • Basepair signature: cWW-L-R-R-tHW-L-cWW
  • History status: Exact match
101
302
  • IL_11778.1
IL_11778.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
81
303
  • IL_91089.1
IL_91089.1
  • Basepair signature: cWW-L-L-L-L-cWW
  • History status: Exact match
81
304
  • IL_47702.1
IL_47702.1
  • Basepair signature: cWW-R-tWH-L-R-R-R-R-L-L-cWW
  • History status: New id, no parents
161



New id, 2 parents 23; Updated, 2 parents 7; New id, 1 parent 28; Updated, 1 parent 56; Exact match 167; New id, no parents 17; > 2 parents 6;