6QDW Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6QDW_001 | 1/a/38:44 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_87939.1 | |
| HL_6QDW_002 | 1/a/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_6QDW_003 | 1/b/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_6QDW_004 | 1/b/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_6QDW_005 | 1/b/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_6QDW_006 | 1/b/137:142 | No text annotation Not in a motif group | geometric HL_6QN3_003 HL_03562.2 | |
| HL_6QDW_007 | 1/b/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_6QDW_008 | 1/b/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_06192.2 | |
| HL_6QDW_009 | 1/b/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_6QDW_010 | 1/b/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_6QDW_011 | 1/b/305:312 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_6QDW_012 | 1/b/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_6QDW_013 | 1/b/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_6QDW_014 | 1/b/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_6QDW_015 | 1/b/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_6QDW_016 | 1/b/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_6QDW_017 | 1/b/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_6QDW_019 | 1/b/568:577 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_89380.2 | |
| HL_6QDW_020 | 1/b/613:619 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_6QDW_021 | 1/b/631:636 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_6QDW_022 | 1/b/643:649 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_6QDW_023 | 1/b/714:721 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_6QDW_024 | 1/b/746:755 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_6QDW_025 | 1/b/781:787 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_6QDW_026 | 1/b/828:833 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_6QDW_027 | 1/b/881:900 | No text annotation Not in a motif group | ||
| HL_6QDW_028 | 1/b/957:964 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_6QDW_029 | 1/b/980:987 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_6QDW_030 | 1/b/1093:1102 | No text annotation Not in a motif group | ||
| HL_6QDW_031 | 1/b/1172:1181 | No text annotation Not in a motif group | ||
| HL_6QDW_032 | 1/b/1224:1229 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_6QDW_033 | 1/b/1283:1291 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_6QDW_034 | 1/b/1326:1332 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_6QDW_035 | 1/b/1365:1370 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_6QDW_036 | 1/b/1391:1400 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_6QDW_037 | 1/b/1452:1463 | No text annotation Not in a motif group | ||
| HL_6QDW_038 | 1/b/1494:1500 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_6QDW_039 | 1/b/1533:1542 | No text annotation Not in a motif group | ||
| HL_6QDW_040 | 1/b/1567:1570 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_6QDW_041 | 1/b/1614:1621 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_6QDW_042 | 1/b/1632:1638 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_6QDW_043 | 1/b/1693:1698 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_03562.2 | |
| HL_6QDW_044 | 1/b/1730:1733 | No text annotation Not in a motif group | homologous HL_5J7L_176 HL_98426.1 | |
| HL_6QDW_045 | 1/b/1754:1758 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_6QDW_046 | 1/b/1779:1789 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.5 | |
| HL_6QDW_047 | 1/b/1808:1813 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_6QDW_049 | 1/b/1914:1924 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_6QDW_050 | 1/b/1953:1961 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_6QDW_051 | 1/b/2031:2040 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_6QDW_052 | 1/b/2107:2190 | No text annotation Not in a motif group | ||
| HL_6QDW_053 | 1/b/2213:2219 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_6QDW_054 | 1/b/2252:2260 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_6QDW_055 | 1/b/2268:2280 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_6QDW_056 | 1/b/2307:2317 | No text annotation Not in a motif group | homologous HL_5J7L_188 HL_11805.3 | |
| HL_6QDW_057 | 1/b/2328:2335 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_6QDW_058 | 1/b/2360:2365 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_6QDW_059 | 1/b/2377:2384 | No text annotation Not in a motif group | ||
| HL_6QDW_060 | 1/b/2408:2417 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_6QDW_061 | 1/b/2475:2483 | No text annotation Not in a motif group | homologous HL_7A0S_059 HL_06192.2 | |
| HL_6QDW_062 | 1/b/2532:2539 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_6QDW_063 | 1/b/2555:2561 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_6QDW_064 | 1/b/2598:2603 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_6QDW_065 | 1/b/2662:2667 | No text annotation Not in a motif group | homologous HL_7RQB_064 HL_42097.1 | |
| HL_6QDW_066 | 1/b/2705:2710 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_6QDW_067 | 1/b/2749:2763 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_6QDW_068 | 1/b/2799:2805 | Other HL Not in a motif group | homologous HL_5J7L_200 HL_34168.2 | |
| HL_6QDW_069 | 1/b/2823:2831 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_6QDW_070 | 1/b/2860:2865 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 | |
| HL_6QDW_071 | 1/v/26:42 | No text annotation Not in a motif group | ||
| HL_6QDW_072 | 1/v/52:60 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WJ4_003 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6QDW_018 | No text annotation | ||
| HL_6QDW_048 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6QDW_001 | 1/a/6:8, 1/a/112:113 | Single stack bend Not in a motif group | geometric IL_5TBW_009 IL_76488.2 | |
| IL_6QDW_002 | 1/a/17:18, 1/a/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.2 | |
| IL_6QDW_003 | 1/a/23:28, 1/a/56:60 | No text annotation Not in a motif group | ||
| IL_6QDW_004 | 1/a/30:31, 1/a/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V9F_103 IL_09061.6 | |
| IL_6QDW_005 | 1/a/34:38, 1/a/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_5J7L_358 IL_58103.6 | |
| IL_6QDW_006 | 1/a/71:79, 1/a/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
| IL_6QDW_007 | 1/b/3:7, 1/b/2900:2903 | No text annotation Not in a motif group | ||
| IL_6QDW_008 | 1/b/24:30, 1/b/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5J7L_245 IL_66414.6 | |
| IL_6QDW_009 | 1/b/36:37, 1/b/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_6QDW_010 | 1/b/43:44, 1/b/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_6QDW_011 | 1/b/81:85, 1/b/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_6QDW_012 | 1/b/183:184, 1/b/212:214 | Single stack bend Not in a motif group | homologous IL_5J7L_249 IL_76488.2 | |
| IL_6QDW_013 | 1/b/188:194, 1/b/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.7 | |
| IL_6QDW_014 | 1/b/239:245, 1/b/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_6QDW_015 | 1/b/269:271, 1/b/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_6QDW_016 | 1/b/273:281, 1/b/359:364 | No text annotation Not in a motif group | ||
| IL_6QDW_017 | 1/b/293:295, 1/b/343:347 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.1 | |
| IL_6QDW_018 | 1/b/481:484, 1/b/496:509 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.6 | |
| IL_6QDW_019 | 1/b/536:539, 1/b/556:559 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_6QDW_020 | 1/b/566:568, 1/b/577:579 | No text annotation Not in a motif group | homologous IL_5J7L_257 IL_95997.1 | |
| IL_6QDW_021 | 1/b/608:612, 1/b/620:624 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_6QDW_022 | 1/b/674:676, 1/b/808:810 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_6QDW_023 | 1/b/676:680, 1/b/801:808 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.6 | |
| IL_6QDW_024 | 1/b/699:700, 1/b/765:767 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.2 | |
| IL_6QDW_025 | 1/b/704:705, 1/b/730:732 | Single bulged G Not in a motif group | homologous IL_5J7L_262 IL_00225.2 | |
| IL_6QDW_026 | 1/b/705:709, 1/b/726:730 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_6QDW_027 | 1/b/740:742, 1/b/759:760 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_6QDW_028 | 1/b/777:779, 1/b/789:793 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_6QDW_029 | 1/b/846:850, 1/b/932:936 | No text annotation Not in a motif group | ||
| IL_6QDW_030 | 1/b/852:853, 1/b/928:930 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_6QDW_031 | 1/b/858:864, 1/b/917:923 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_6QDW_032 | 1/b/864:865, 1/b/915:917 | Single bulged G Not in a motif group | homologous IL_5J7L_271 IL_00225.2 | |
| IL_6QDW_033 | 1/b/866:870, 1/b/911:914 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_6QDW_034 | 1/b/872:874, 1/b/907:909 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_6QDW_035 | 1/b/877:881, 1/b/900:904 | UAA/GAN Not in a motif group | geometric IL_5TBW_023 IL_07235.1 | |
| IL_6QDW_036 | 1/b/996:998, 1/b/1161:1162 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_6QDW_037 | 1/b/1000:1004, 1/b/1155:1159 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_6QDW_038 | 1/b/1006:1013, 1/b/1152:1153 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_6QDW_039 | 1/b/1013:1015, 1/b/1151:1152 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_6QDW_040 | 1/b/1020:1026, 1/b/1142:1146 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_6QDW_041 | 1/b/1026:1032, 1/b/1126:1142 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_6QDW_042 | 1/b/1033:1036, 1/b/1123:1125 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_6QDW_044 | 1/b/1053:1092, 1/b/1103:1110 | No text annotation Not in a motif group | ||
| IL_6QDW_045 | 1/b/1198:1200, 1/b/1249:1252 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_52767.2 | |
| IL_6QDW_046 | 1/b/1204:1208, 1/b/1242:1245 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6QDW_047 | 1/b/1210:1217, 1/b/1236:1240 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_6QDW_048 | 1/b/1264:1271, 1/b/2015:2021 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_6QDW_049 | 1/b/1312:1315, 1/b/1605:1606 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_6QDW_050 | 1/b/1321:1325, 1/b/1333:1335 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_6QDW_051 | 1/b/1353:1357, 1/b/1378:1382 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_6QDW_052 | 1/b/1359:1363, 1/b/1372:1376 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_6QDW_053 | 1/b/1412:1413, 1/b/1592:1594 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6QDW_054 | 1/b/1413:1419, 1/b/1583:1592 | No text annotation Not in a motif group | ||
| IL_6QDW_055 | 1/b/1419:1423, 1/b/1579:1583 | UAA/GAN Not in a motif group | geometric IL_5J7L_295 IL_89002.2 | |
| IL_6QDW_056 | 1/b/1434:1437, 1/b/1559:1563 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_6QDW_057 | 1/b/1439:1442, 1/b/1553:1557 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
| IL_6QDW_058 | 1/b/1470:1473, 1/b/1522:1526 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_6QDW_059 | 1/b/1476:1480, 1/b/1515:1519 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_6QDW_060 | 1/b/1483:1484, 1/b/1509:1512 | No text annotation Not in a motif group | ||
| IL_6QDW_061 | 1/b/1491:1493, 1/b/1501:1502 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_6QDW_062 | 1/b/1528:1531, 1/b/1544:1548 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_6QDW_063 | 1/b/1653:1658, 1/b/2008:2010 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_6QDW_064 | 1/b/1665:1667, 1/b/1999:2001 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_6QDW_065 | 1/b/1668:1671, 1/b/1997:1998 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_306 IL_50694.2 | |
| IL_6QDW_066 | 1/b/1671:1676, 1/b/1994:1997 | Intercalated tWH Not in a motif group | geometric IL_5J7L_307 IL_82842.2 | |
| IL_6QDW_067 | 1/b/1688:1693, 1/b/1698:1704 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_65969.2 | |
| IL_6QDW_068 | 1/b/1714:1720, 1/b/1744:1748 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_6QDW_069 | 1/b/1722:1726, 1/b/1738:1742 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
| IL_6QDW_070 | 1/b/1729:1730, 1/b/1733:1735 | Single bulged C Not in a motif group | geometric IL_5J7L_311 IL_61258.12 | |
| IL_6QDW_071 | 1/b/1772:1773, 1/b/1984:1986 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_6QDW_072 | 1/b/1800:1806, 1/b/1815:1823 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_6QDW_073 | 1/b/1839:1842, 1/b/1906:1907 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_6QDW_074 | 1/b/1843:1844, 1/b/1902:1905 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_6QDW_075 | 1/b/1848:1851, 1/b/1897:1898 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_6QDW_076 | 1/b/1866:1869, 1/b/1878:1882 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_6QDW_077 | 1/b/1937:1938, 1/b/1968:1971 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_6QDW_078 | 1/b/1938:1949, 1/b/1965:1968 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_6QDW_079 | 1/b/2054:2056, 1/b/2621:2622 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_6QDW_080 | 1/b/2058:2060, 1/b/2616:2619 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_6QDW_081 | 1/b/2071:2073, 1/b/2446:2447 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.13 | |
| IL_6QDW_082 | 1/b/2074:2075, 1/b/2442:2445 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_6QDW_083 | 1/b/2085:2087, 1/b/2240:2243 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_6QDW_084 | 1/b/2089:2091, 1/b/2236:2238 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_6QDW_085 | 1/b/2206:2208, 1/b/2224:2225 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_6QDW_086 | 1/b/2301:2303, 1/b/2321:2325 | No text annotation Not in a motif group | geometric IL_5J7L_332 IL_56105.1 | |
| IL_6QDW_087 | 1/b/2354:2357, 1/b/2368:2371 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_6QDW_088 | 1/b/2405:2407, 1/b/2418:2419 | No text annotation Not in a motif group | ||
| IL_6QDW_089 | 1/b/2457:2458, 1/b/2502:2504 | Single stack bend Not in a motif group | homologous IL_4WF9_089 IL_76488.2 | |
| IL_6QDW_090 | 1/b/2458:2459, 1/b/2500:2502 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
| IL_6QDW_091 | 1/b/2461:2463, 1/b/2497:2498 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.1 | |
| IL_6QDW_092 | 1/b/2463:2465, 1/b/2493:2497 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_337 IL_92788.2 | |
| IL_6QDW_093 | 1/b/2470:2474, 1/b/2484:2488 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_6QDW_094 | 1/b/2511:2512, 1/b/2584:2586 | Major groove platform Not in a motif group | homologous IL_7A0S_088 IL_76223.2 | |
| IL_6QDW_095 | 1/b/2514:2516, 1/b/2578:2582 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_340 IL_90933.2 | |
| IL_6QDW_096 | 1/b/2516:2517, 1/b/2575:2578 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_6QDW_097 | 1/b/2526:2527, 1/b/2544:2547 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_6QDW_098 | 1/b/2595:2596, 1/b/2605:2607 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_6QDW_099 | 1/b/2640:2644, 1/b/2778:2786 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
| IL_6QDW_100 | 1/b/2656:2662, 1/b/2667:2672 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_5J7L_346 IL_16458.1 | |
| IL_6QDW_101 | 1/b/2684:2688, 1/b/2729:2731 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_6QDW_102 | 1/b/2691:2695, 1/b/2722:2726 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_6QDW_103 | 1/b/2699:2700, 1/b/2715:2718 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_6QDW_104 | 1/b/2741:2746, 1/b/2766:2771 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_6QDW_105 | 1/b/2810:2815, 1/b/2893:2896 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_6QDW_106 | 1/b/2842:2843, 1/b/2882:2884 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_6QDW_107 | 1/b/2847:2850, 1/b/2874:2878 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_6QDW_108 | 1/b/2851:2856, 1/b/2869:2873 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6QDW_043 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6QDW_001 | 1/a/10:16, 1/a/68:70, 1/a/106:110 | No text annotation Not in a motif group | homologous J3_7A0S_014 NA | |
| J3_6QDW_002 | 1/b/30:31, 1/b/474:481, 1/b/509:510 | No text annotation Not in a motif group | ||
| J3_6QDW_003 | 1/b/56:57, 1/b/70:76, 1/b/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_6QDW_004 | 1/b/685:691, 1/b/775:777, 1/b/793:796 | No text annotation Not in a motif group | ||
| J3_6QDW_005 | 1/b/700:702, 1/b/734:738, 1/b/762:765 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_6QDW_006 | 1/b/1300:1305, 1/b/1627:1629, 1/b/1641:1644 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_6QDW_007 | 1/b/1308:1311, 1/b/1607:1613, 1/b/1622:1624 | No text annotation Not in a motif group | ||
| J3_6QDW_008 | 1/b/2095:2097, 1/b/2200:2204, 1/b/2227:2232 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_6QDW_009 | 1/b/2299:2301, 1/b/2325:2327, 1/b/2336:2341 | No text annotation Not in a motif group | homologous J3_5J7L_045 NA | |
| J3_6QDW_010 | 1/b/2521:2524, 1/b/2549:2551, 1/b/2565:2571 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_6QDW_011 | 1/b/2793:2795, 1/b/2809:2810, 1/b/2896:2898 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_6QDW_012 | 1/b/2816:2819, 1/b/2835:2840, 1/b/2886:2892 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA |
Problematic loops
No problematic loops
Coloring options: