Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7UNU_0011/A/59:68No text annotation
Not in a motif group
geometric
HL_4GXY_003
HL_96598.1
HL_7UNU_0021/A/87:96No text annotation
Not in a motif group
geometric
HL_6JXM_002
HL_88526.2
HL_7UNU_0031/A/123:128No text annotation
Not in a motif group
geometric
HL_5J7L_136
HL_75407.1
HL_7UNU_0041/A/137:142No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_7UNU_0051/A/158:168No text annotation
Not in a motif group
geometric
HL_5J7L_138
HL_81820.1
HL_7UNU_0061/A/194:201No text annotation
Not in a motif group
geometric
HL_4WF9_006
HL_06192.2
HL_7UNU_0071/A/225:230No text annotation
Not in a motif group
geometric
HL_5J7L_140
HL_27930.1
HL_7UNU_0081/A/246:252No text annotation
Not in a motif group
geometric
HL_7RQB_008
HL_67216.7
HL_7UNU_0091/A/299:306No text annotation
Not in a motif group
geometric
HL_7A0S_010
HL_89380.2
HL_7UNU_0101/A/313:317No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.2
HL_7UNU_0111/A/321:329No text annotation
Not in a motif group
geometric
HL_5J7L_144
HL_08002.8
HL_7UNU_0121/A/373:383No text annotation
Not in a motif group
geometric
HL_5J7L_145
HL_91503.4
HL_7UNU_0131/A/401:408No text annotation
Not in a motif group
geometric
HL_7A0S_014
HL_96598.1
HL_7UNU_0141/A/453:458GNRA
Not in a motif group
geometric
HL_4WF9_015
HL_42097.1
HL_7UNU_0151/A/478:484No text annotation
Not in a motif group
geometric
HL_5J7L_148
HL_42097.1
HL_7UNU_0161/A/535:538No text annotation
Not in a motif group
geometric
HL_4V88_192
HL_53837.1
HL_7UNU_0171/A/556:565T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5J7L_150
HL_89380.2
HL_7UNU_0181/A/601:607No text annotation
Not in a motif group
geometric
HL_5J7L_151
HL_90617.2
HL_7UNU_0191/A/619:624GNRA
Not in a motif group
geometric
HL_5J7L_152
HL_42097.1
HL_7UNU_0201/A/631:637No text annotation
Not in a motif group
geometric
HL_7RQB_021
HL_42097.1
HL_7UNU_0211/A/702:709No text annotation
Not in a motif group
geometric
HL_5D8H_002
HL_84085.2
HL_7UNU_0221/A/734:743No text annotation
Not in a motif group
geometric
HL_4WF9_023
HL_39334.6
HL_7UNU_0231/A/769:775No text annotation
Not in a motif group
geometric
HL_7RQB_024
HL_74322.1
HL_7UNU_0241/A/816:821No text annotation
Not in a motif group
geometric
HL_7RQB_025
HL_64365.1
HL_7UNU_0251/A/874:880No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_7UNU_0261/A/945:952GNRA
Not in a motif group
geometric
HL_4WF9_027
HL_42097.1
HL_7UNU_0271/A/968:975No text annotation
Not in a motif group
geometric
HL_5J7L_160
HL_64430.2
HL_7UNU_0281/A/1054:1064No text annotation
Not in a motif group
geometric
HL_5D8H_001
HL_07145.1
HL_7UNU_0291/A/1082:1089No text annotation
Not in a motif group
geometric
HL_6PRV_002
HL_84085.2
HL_7UNU_0311/A/1209:1214No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_7UNU_0321/A/1268:1276T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5J7L_165
HL_89380.2
HL_7UNU_0331/A/1311:1317No text annotation
Not in a motif group
geometric
HL_4V9F_035
HL_46680.1
HL_7UNU_0341/A/1350:1355Other HL
Not in a motif group
geometric
HL_5J7L_167
HL_87030.2
HL_7UNU_0351/A/1376:1385No text annotation
Not in a motif group
geometric
HL_4V9F_037
HL_69023.2
HL_7UNU_0361/A/1438:1446No text annotation
Not in a motif group
geometric
HL_5J7L_169
HL_53837.1
HL_7UNU_0371/A/1479:1485No text annotation
Not in a motif group
geometric
HL_5J7L_170
HL_46680.1
HL_7UNU_0391/A/1555:1558No text annotation
Not in a motif group
geometric
HL_7RQB_039
HL_38927.2
HL_7UNU_0401/A/1602:1609No text annotation
Not in a motif group
HL_7UNU_0411/A/1620:1626GNRA with one bulged base
Not in a motif group
geometric
HL_5J7L_174
HL_42097.1
HL_7UNU_0421/A/1681:1686UNCG
Not in a motif group
geometric
HL_4JF2_003
HL_03562.2
HL_7UNU_0431/A/1715:1718No text annotation
Not in a motif group
geometric
HL_4V88_192
HL_53837.1
HL_7UNU_0441/A/1739:1743No text annotation
Not in a motif group
geometric
HL_7RQB_044
HL_76539.2
HL_7UNU_0451/A/1764:1774No text annotation
Not in a motif group
geometric
HL_4WF9_043
HL_43613.5
HL_7UNU_0461/A/1793:1798No text annotation
Not in a motif group
geometric
HL_5J7L_179
HL_42097.1
HL_7UNU_0471/A/1855:1860No text annotation
Not in a motif group
geometric
HL_7A0S_063
HL_42097.1
HL_7UNU_0481/A/1897:1907No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_7UNU_0491/A/1936:1944No text annotation
Not in a motif group
geometric
HL_5J7L_182
HL_51824.1
HL_7UNU_0501/A/2014:2023No text annotation
Not in a motif group
HL_7UNU_0511/A/2130:2135No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_7UNU_0521/A/2196:2202No text annotation
Not in a motif group
geometric
HL_5J7L_185
HL_16845.6
HL_7UNU_0531/A/2235:2243No text annotation
Not in a motif group
geometric
HL_7A0S_052
HL_53171.2
HL_7UNU_0541/A/2251:2263No text annotation
Not in a motif group
geometric
HL_5J7L_187
HL_19870.6
HL_7UNU_0551/A/2290:2300No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.2
HL_7UNU_0561/A/2311:2318No text annotation
Not in a motif group
geometric
HL_5J7L_189
HL_12078.2
HL_7UNU_0571/A/2342:2349No text annotation
Not in a motif group
geometric
HL_4WF9_053
HL_09136.1
HL_7UNU_0581/A/2361:2366GNRA
Not in a motif group
geometric
HL_5J7L_191
HL_42097.1
HL_7UNU_0591/A/2391:2400No text annotation
Not in a motif group
geometric
HL_5J7L_192
HL_30784.2
HL_7UNU_0601/A/2458:2466No text annotation
Not in a motif group
geometric
HL_5TBW_061
HL_06192.2
HL_7UNU_0611/A/2515:2522No text annotation
Not in a motif group
geometric
HL_4WF9_057
HL_88526.2
HL_7UNU_0621/A/2538:2544No text annotation
Not in a motif group
geometric
HL_4WF9_058
HL_43656.2
HL_7UNU_0631/A/2581:2586GNRA
Not in a motif group
geometric
HL_3IGI_003
HL_42097.1
HL_7UNU_0641/A/2645:2650GNRA
Not in a motif group
geometric
HL_5J7L_197
HL_42097.1
HL_7UNU_0651/A/2688:2693Ribsomal LSU H95
Not in a motif group
geometric
HL_5J7L_198
HL_46680.1
HL_7UNU_0661/A/2732:2746No text annotation
Not in a motif group
geometric
HL_4V9F_068
HL_56677.7
HL_7UNU_0671/A/2783:2786No text annotation
Not in a motif group
geometric
HL_4WF9_037
HL_94803.1
HL_7UNU_0681/A/2806:2814No text annotation
Not in a motif group
geometric
HL_7RQB_068
HL_27930.1
HL_7UNU_0691/A/2843:2848GNRA
Not in a motif group
geometric
HL_5J7L_152
HL_42097.1
HL_7UNU_0701/B/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_7UNU_0711/B/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2
HL_7UNU_0721/a/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_7UNU_0731/a/80:83No text annotation
Not in a motif group
HL_7UNU_0741/a/152:157GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.1
HL_7UNU_0751/a/180:185Other HL
Not in a motif group
geometric
HL_1P6V_001
HL_03562.2
HL_7UNU_0761/a/201:206No text annotation
Not in a motif group
geometric
HL_4V88_198
HL_56691.2
HL_7UNU_0771/a/253:261No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_7UNU_0781/a/290:295GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_7UNU_0791/a/314:327No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_7UNU_0801/a/336:341UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_7UNU_0811/a/373:378GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_7UNU_0821/a/413:418UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_7UNU_0831/a/456:464No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_7UNU_0841/a/515:522No text annotation
Not in a motif group
homologous
HL_4LFB_013
NA
HL_7UNU_0851/a/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_7UNU_0861/a/683:692No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_7UNU_0871/a/720:725Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_7UNU_0881/a/780:790No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_7UNU_0891/a/856:861GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_7UNU_0901/a/891:896GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_7UNU_0911/a/957:966No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_7UNU_0921/a/1006:1011GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_7UNU_0931/a/1022:1027UNCG
Not in a motif group
geometric
HL_5J7L_030
HL_03562.2
HL_7UNU_0941/a/1070:1075GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.1
HL_7UNU_0951/a/1083:1090No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_7UNU_0961/a/1128:1134No text annotation
Not in a motif group
homologous
HL_5J7L_025
HL_03562.2
HL_7UNU_0971/a/1159:1165GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_7UNU_0981/a/1259:1264GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_42097.1
HL_7UNU_0991/a/1308:1317No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_89380.2
HL_7UNU_1001/a/1350:1360No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_7UNU_1011/a/1443:1448UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_7UNU_1021/a/1509:1514No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_7UNU_1031/v/13:22No text annotation
Not in a motif group
geometric
HL_4TUE_033
HL_25462.2
HL_7UNU_1041/v/31:39tRNA anticodon loop
Not in a motif group
geometric
HL_4TUE_034
HL_53597.2
HL_7UNU_1051/v/53:61No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2

Problematic loops

#loop idProblemSequence
HL_7UNU_030No text annotation
HL_7UNU_038No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7UNU_0011/A/24:30,
1/A/501:507
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_5J7L_245
IL_66414.6
IL_7UNU_0021/A/36:37,
1/A/433:435
Single bulged A
Not in a motif group
geometric
IL_7RQB_002
IL_37497.2
IL_7UNU_0031/A/43:44,
1/A/425:427
Minor groove platform
Not in a motif group
geometric
IL_7A0S_003
IL_42622.2
IL_7UNU_0041/A/81:85,
1/A/98:105
Kink-turn
Not in a motif group
geometric
IL_6UFG_001
IL_45067.2
IL_7UNU_0051/A/183:184,
1/A/212:214
Single stack bend
Not in a motif group
geometric
IL_7A0S_005
IL_76488.2
IL_7UNU_0061/A/188:194,
1/A/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7A0S_006
IL_04346.7
IL_7UNU_0071/A/239:245,
1/A/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_251
IL_76042.2
IL_7UNU_0081/A/269:274,
1/A/354:361
No text annotation
Not in a motif group
IL_7UNU_0091/A/279:282,
1/A/346:349
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5C5W_003
IL_30621.2
IL_7UNU_0101/A/287:289,
1/A/337:341
No text annotation
Not in a motif group
geometric
IL_4WF9_014
IL_69440.1
IL_7UNU_0111/A/297:299,
1/A/306:308
No text annotation
Not in a motif group
geometric
IL_3BNT_001
IL_95997.1
IL_7UNU_0121/A/472:475,
1/A/487:500
No text annotation
Not in a motif group
geometric
IL_5J7L_255
IL_60992.6
IL_7UNU_0131/A/527:530,
1/A/544:547
Double sheared
Not in a motif group
geometric
IL_5J7L_256
IL_09705.9
IL_7UNU_0141/A/534:535,
1/A/538:540
Single bulged U
Not in a motif group
geometric
IL_6MWN_006
IL_83039.13
IL_7UNU_0151/A/554:556,
1/A/565:567
No text annotation
Not in a motif group
geometric
IL_5J7L_257
IL_95997.1
IL_7UNU_0161/A/596:600,
1/A/608:612
AAA cross-strand stack
Not in a motif group
geometric
IL_5J7L_258
IL_17136.1
IL_7UNU_0171/A/662:664,
1/A/796:798
No text annotation
Not in a motif group
geometric
IL_5J7L_259
IL_95997.1
IL_7UNU_0181/A/664:668,
1/A/789:796
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_5J7L_260
IL_17470.6
IL_7UNU_0191/A/687:688,
1/A/753:755
Single bulged A
Not in a motif group
geometric
IL_4V9F_025
IL_37497.2
IL_7UNU_0201/A/692:693,
1/A/718:720
Single bulged G
Not in a motif group
geometric
IL_7RQB_020
IL_00225.2
IL_7UNU_0211/A/693:697,
1/A/714:718
Triple sheared
Not in a motif group
geometric
IL_5J7L_263
IL_56467.8
IL_7UNU_0221/A/728:730,
1/A/747:748
Major groove platform
Not in a motif group
geometric
IL_5J7L_264
IL_27635.1
IL_7UNU_0231/A/731:733,
1/A/744:746
No text annotation
Not in a motif group
geometric
IL_7A0S_020
IL_95997.1
IL_7UNU_0241/A/765:767,
1/A/777:781
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_023
IL_90991.6
IL_7UNU_0251/A/834:837,
1/A/919:924
No text annotation
Not in a motif group
IL_7UNU_0261/A/839:840,
1/A/915:917
Single stack bend
Not in a motif group
geometric
IL_5J7L_269
IL_76488.2
IL_7UNU_0271/A/845:851,
1/A/904:910
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_5J7L_270
IL_93830.3
IL_7UNU_0281/A/851:852,
1/A/902:904
Minor groove platform
Not in a motif group
geometric
IL_4V9F_034
IL_42622.2
IL_7UNU_0291/A/853:857,
1/A/898:901
C-loop
Not in a motif group
geometric
IL_4WF9_033
IL_02509.1
IL_7UNU_0301/A/859:861,
1/A/894:896
Isolated cWS basepair
Not in a motif group
geometric
IL_5TBW_047
IL_52767.2
IL_7UNU_0311/A/864:868,
1/A/887:891
Triple sheared
Not in a motif group
geometric
IL_4WFL_001
IL_56467.8
IL_7UNU_0321/A/869:874,
1/A/880:886
No text annotation
Not in a motif group
IL_7UNU_0331/A/984:986,
1/A/1150:1151
Single bulged C
Not in a motif group
geometric
IL_7RQB_035
IL_61258.12
IL_7UNU_0341/A/988:992,
1/A/1144:1148
UAA/GAN
Not in a motif group
geometric
IL_5J7L_277
IL_89002.2
IL_7UNU_0351/A/994:1001,
1/A/1141:1142
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5J7L_278
IL_15861.7
IL_7UNU_0361/A/1001:1003,
1/A/1140:1141
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.13
IL_7UNU_0371/A/1008:1014,
1/A/1130:1135
No text annotation
Not in a motif group
geometric
IL_5J7L_280
IL_57188.3
IL_7UNU_0381/A/1014:1020,
1/A/1114:1130
No text annotation
Not in a motif group
geometric
IL_4WF9_040
IL_50715.1
IL_7UNU_0391/A/1021:1024,
1/A/1111:1113
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_282
IL_82068.2
IL_7UNU_0401/A/1028:1031,
1/A/1104:1107
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5J7L_283
IL_30621.2
IL_7UNU_0411/A/1033:1041,
1/A/1098:1102
Kink-turn
Not in a motif group
geometric
IL_5J7L_284
IL_90538.4
IL_7UNU_0421/A/1049:1052,
1/A/1066:1069
No text annotation
Not in a motif group
geometric
IL_5D8H_002
IL_23544.2
IL_7UNU_0431/A/1077:1080,
1/A/1091:1092
Major groove platform
Not in a motif group
geometric
IL_3OXE_003
IL_27635.1
IL_7UNU_0441/A/1183:1185,
1/A/1234:1237
Isolated cWS basepair
Not in a motif group
geometric
IL_4WF9_044
IL_52767.2
IL_7UNU_0451/A/1189:1193,
1/A/1227:1230
No text annotation
Not in a motif group
geometric
IL_5J7L_287
IL_91920.1
IL_7UNU_0461/A/1195:1202,
1/A/1221:1225
Kink-turn
Not in a motif group
geometric
IL_5J7L_288
IL_70923.2
IL_7UNU_0471/A/1249:1256,
1/A/1998:2004
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_289
IL_04346.7
IL_7UNU_0481/A/1297:1300,
1/A/1593:1594
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_5J7L_290
IL_50694.2
IL_7UNU_0491/A/1306:1310,
1/A/1318:1320
C-loop
Not in a motif group
geometric
IL_7RQB_051
IL_63596.6
IL_7UNU_0501/A/1338:1342,
1/A/1363:1367
UAA/GAN
Not in a motif group
geometric
IL_5J7L_292
IL_89002.2
IL_7UNU_0511/A/1344:1348,
1/A/1357:1361
tSH-tHW-tHS
Not in a motif group
geometric
IL_5J7L_293
IL_17136.1
IL_7UNU_0521/A/1402:1403,
1/A/1572:1577
No text annotation
Not in a motif group
IL_7UNU_0531/A/1404:1408,
1/A/1567:1571
UAA/GAN
Not in a motif group
geometric
IL_5J7L_295
IL_89002.2
IL_7UNU_0541/A/1419:1422,
1/A/1547:1551
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5J7L_296
IL_55178.1
IL_7UNU_0551/A/1424:1427,
1/A/1541:1545
tSH-tHW
Not in a motif group
geometric
IL_7RQB_057
IL_04059.1
IL_7UNU_0561/A/1437:1438,
1/A/1446:1448
Single bulged U
Not in a motif group
geometric
IL_5J7L_298
IL_83039.13
IL_7UNU_0571/A/1455:1458,
1/A/1507:1511
No text annotation
Not in a motif group
geometric
IL_5J7L_299
IL_68574.2
IL_7UNU_0581/A/1460:1465,
1/A/1500:1505
No text annotation
Not in a motif group
IL_7UNU_0591/A/1468:1469,
1/A/1494:1497
No text annotation
Not in a motif group
geometric
IL_5J7L_301
IL_67474.4
IL_7UNU_0601/A/1476:1478,
1/A/1486:1487
Single bulged A
Not in a motif group
geometric
IL_5J7L_302
IL_37497.2
IL_7UNU_0611/A/1513:1516,
1/A/1532:1536
UAA/GAN variation
Not in a motif group
geometric
IL_5J7L_303
IL_07235.1
IL_7UNU_0621/A/1641:1646,
1/A/1991:1993
No text annotation
Not in a motif group
geometric
IL_5J7L_304
IL_12566.2
IL_7UNU_0631/A/1653:1655,
1/A/1982:1984
Isolated tWW turn
Not in a motif group
geometric
IL_5J7L_305
IL_54997.7
IL_7UNU_0641/A/1656:1659,
1/A/1980:1981
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_5J7L_306
IL_50694.2
IL_7UNU_0651/A/1659:1664,
1/A/1977:1980
Intercalated tWH
Not in a motif group
geometric
IL_4WF9_065
IL_82842.2
IL_7UNU_0661/A/1676:1681,
1/A/1686:1692
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_5J7L_308
IL_65969.2
IL_7UNU_0671/A/1708:1712,
1/A/1722:1727
Triple sheared related
Not in a motif group
geometric
IL_5J7L_063
IL_64879.2
IL_7UNU_0681/A/1714:1715,
1/A/1718:1720
No text annotation
Not in a motif group
IL_7UNU_0691/A/1757:1758,
1/A/1967:1969
Single bulged A
Not in a motif group
geometric
IL_5J7L_312
IL_37497.2
IL_7UNU_0701/A/1785:1791,
1/A/1800:1808
Kink-turn related
Not in a motif group
geometric
IL_5J7L_313
IL_17069.3
IL_7UNU_0711/A/1824:1827,
1/A/1889:1890
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_5J7L_314
IL_88739.1
IL_7UNU_0721/A/1828:1829,
1/A/1885:1888
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_4V9F_067
IL_16396.2
IL_7UNU_0731/A/1833:1836,
1/A/1880:1881
Major groove minor groove platform; mini C-loop
Not in a motif group
geometric
IL_5J7L_316
IL_09061.6
IL_7UNU_0741/A/1851:1854,
1/A/1861:1865
UAA/GAN related
Not in a motif group
geometric
IL_5J7L_317
IL_77691.1
IL_7UNU_0751/A/1920:1921,
1/A/1951:1954
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_076
IL_59677.2
IL_7UNU_0761/A/1921:1932,
1/A/1948:1951
No text annotation
Not in a motif group
geometric
IL_7A0S_072
IL_81589.2
IL_7UNU_0771/A/2037:2039,
1/A/2604:2605
Major groove platform
Not in a motif group
geometric
IL_7RQB_078
IL_27635.1
IL_7UNU_0781/A/2041:2043,
1/A/2599:2602
No text annotation
Not in a motif group
geometric
IL_5J7L_321
IL_54678.5
IL_7UNU_0791/A/2051:2053,
1/A/2431:2433
Not an internal loop
Not in a motif group
geometric
IL_5VCI_005
IL_82842.2
IL_7UNU_0801/A/2054:2057,
1/A/2428:2430
No text annotation
Not in a motif group
geometric
IL_5C5W_002
IL_95997.1
IL_7UNU_0811/A/2057:2058,
1/A/2425:2428
Minor groove platform
Not in a motif group
geometric
IL_5TBW_094
IL_42622.2
IL_7UNU_0821/A/2068:2070,
1/A/2223:2226
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_5J7L_325
IL_38958.7
IL_7UNU_0831/A/2072:2074,
1/A/2219:2221
No text annotation
Not in a motif group
geometric
IL_5J7L_326
IL_95997.1
IL_7UNU_0841/A/2089:2093,
1/A/2170:2174
No text annotation
Not in a motif group
IL_7UNU_0851/A/2103:2115,
1/A/2147:2152
No text annotation
Not in a motif group
IL_7UNU_0861/A/2115:2128,
1/A/2137:2147
No text annotation
Not in a motif group
IL_7UNU_0871/A/2189:2191,
1/A/2207:2208
Single bulged U
Not in a motif group
geometric
IL_4O26_001
IL_83039.13
IL_7UNU_0881/A/2284:2286,
1/A/2304:2308
No text annotation
Not in a motif group
geometric
IL_5J7L_332
IL_56105.1
IL_7UNU_0891/A/2337:2340,
1/A/2351:2354
Double sheared
Not in a motif group
geometric
IL_5J7L_333
IL_09705.9
IL_7UNU_0901/A/2388:2390,
1/A/2401:2402
Single bulged U
Not in a motif group
geometric
IL_5J7L_334
IL_83039.13
IL_7UNU_0911/A/2440:2442,
1/A/2483:2487
No text annotation
Not in a motif group
IL_7UNU_0921/A/2444:2446,
1/A/2480:2481
Major groove platform
Not in a motif group
geometric
IL_7A0S_085
IL_27635.1
IL_7UNU_0931/A/2446:2448,
1/A/2476:2480
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_5J7L_337
IL_92788.2
IL_7UNU_0941/A/2453:2457,
1/A/2467:2471
Triple sheared
Not in a motif group
geometric
IL_5J7L_338
IL_56467.8
IL_7UNU_0951/A/2494:2495,
1/A/2567:2569
Major groove platform
Not in a motif group
geometric
IL_7A0S_088
IL_76223.2
IL_7UNU_0961/A/2497:2499,
1/A/2561:2565
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_90933.2
IL_7UNU_0971/A/2499:2500,
1/A/2558:2561
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_7UNU_0981/A/2509:2510,
1/A/2527:2530
Minor groove platform with intercalation
Not in a motif group
geometric
IL_5J7L_342
IL_95601.3
IL_7UNU_0991/A/2578:2579,
1/A/2588:2590
Single bulged A
Not in a motif group
geometric
IL_1U9S_001
IL_37497.2
IL_7UNU_1001/A/2623:2627,
1/A/2761:2769
tSH-tHS-tHW
Not in a motif group
geometric
IL_7RQB_102
IL_04638.1
IL_7UNU_1011/A/2639:2645,
1/A/2650:2655
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_7A0S_094
IL_16458.1
IL_7UNU_1021/A/2667:2671,
1/A/2712:2714
C-loop
Not in a motif group
geometric
IL_7RQB_104
IL_63596.6
IL_7UNU_1031/A/2674:2678,
1/A/2705:2709
No text annotation
Not in a motif group
geometric
IL_5J7L_348
IL_08296.3
IL_7UNU_1041/A/2682:2683,
1/A/2698:2701
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_349
IL_71530.2
IL_7UNU_1051/A/2724:2729,
1/A/2749:2754
UAA/GAN with extra cWW
Not in a motif group
geometric
IL_5J7L_350
IL_49767.5
IL_7UNU_1061/A/2782:2783,
1/A/2786:2788
Single bulged A
Not in a motif group
geometric
IL_7RQB_019
IL_37497.2
IL_7UNU_1071/A/2793:2798,
1/A/2876:2879
No text annotation
Not in a motif group
geometric
IL_5J7L_351
IL_49460.2
IL_7UNU_1081/A/2825:2826,
1/A/2865:2867
Major groove intercalation
Not in a motif group
geometric
IL_5J7L_352
IL_16396.2
IL_7UNU_1091/A/2830:2833,
1/A/2857:2861
Multiple bulged bases with non-canonical cWW
Not in a motif group
geometric
IL_5J7L_353
IL_58764.3
IL_7UNU_1101/A/2834:2839,
1/A/2852:2856
No text annotation
Not in a motif group
geometric
IL_5J7L_354
IL_83162.5
IL_7UNU_1111/B/17:18,
1/B/65:67
Major groove intercalation
Not in a motif group
homologous
IL_4WF9_112
IL_37497.2
IL_7UNU_1121/B/23:28,
1/B/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_7UNU_1131/B/30:31,
1/B/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_357
IL_09061.6
IL_7UNU_1141/B/34:38,
1/B/44:48
Symmetric double minor groove platform
Not in a motif group
geometric
IL_7RQB_114
IL_58103.6
IL_7UNU_1151/B/71:79,
1/B/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3
IL_7UNU_1161/a/30:32,
1/a/546:547
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_00225.2
IL_7UNU_1171/a/44:45,
1/a/390:392
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_7UNU_1181/a/47:52,
1/a/353:355
No text annotation
Not in a motif group
geometric
IL_5J7L_003
IL_11178.1
IL_7UNU_1191/a/54:56,
1/a/350:351
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_7UNU_1201/a/63:66,
1/a/97:98
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_7UNU_1211/a/67:69,
1/a/94:96
No text annotation
Not in a motif group
geometric
IL_6CZR_171
IL_95997.1
IL_7UNU_1221/a/70:75,
1/a/88:93
No text annotation
Not in a motif group
geometric
IL_5TBW_026
IL_19954.2
IL_7UNU_1231/a/122:125,
1/a/225:227
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_7UNU_1241/a/126:130,
1/a/221:224
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_7UNU_1251/a/138:140,
1/a/170:172
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_7UNU_1261/a/141:147,
1/a/162:169
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_7UNU_1271/a/197:200,
1/a/207:208
Minor groove platform
Not in a motif group
geometric
IL_3IWN_005
IL_15052.1
IL_7UNU_1281/a/236:241,
1/a/271:278
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_7UNU_1291/a/243:246,
1/a/268:269
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_7UNU_1301/a/286:287,
1/a/298:302
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_7UNU_1311/a/361:363,
1/a/386:387
Single bulged U
Not in a motif group
geometric
IL_5J7L_017
IL_83039.13
IL_7UNU_1321/a/365:369,
1/a/383:384
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_7UNU_1331/a/369:370,
1/a/381:383
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_7UNU_1341/a/403:410,
1/a/421:427
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_7UNU_1351/a/434:436,
1/a/486:491
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_7UNU_1361/a/440:444,
1/a/477:482
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_7UNU_1371/a/444:447,
1/a/473:477
No text annotation
Not in a motif group
IL_7UNU_1381/a/498:505,
1/a/534:535
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_7UNU_1391/a/509:515,
1/a/522:530
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_7UNU_1401/a/563:569,
1/a/874:875
No text annotation
Not in a motif group
homologous
IL_5J7L_026
IL_69996.1
IL_7UNU_1411/a/574:578,
1/a/751:755
tSH-tHW-tHS
Not in a motif group
homologous
IL_6CZR_135
IL_17136.1
IL_7UNU_1421/a/587:590,
1/a/638:640
Major groove platform with extra pair
Not in a motif group
geometric
IL_5TBW_091
IL_63450.2
IL_7UNU_1431/a/591:592,
1/a/634:637
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_7UNU_1441/a/599:606,
1/a/622:627
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_7UNU_1451/a/648:649,
1/a/745:748
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_7UNU_1461/a/652:653,
1/a/740:742
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_7UNU_1471/a/656:660,
1/a/734:737
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_7UNU_1481/a/667:672,
1/a/706:711
No text annotation
Not in a motif group
homologous
IL_5J7L_034
IL_04668.1
IL_7UNU_1491/a/678:682,
1/a/693:700
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_7UNU_1501/a/768:772,
1/a/798:799
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_7UNU_1511/a/773:777,
1/a/793:797
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_7UNU_1521/a/881:888,
1/a/899:904
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_7UNU_1531/a/916:917,
1/a/1387:1389
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.2
IL_7UNU_1541/a/919:921,
1/a/1384:1385
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.2
IL_7UNU_1551/a/927:929,
1/a/1374:1378
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_7UNU_1561/a/947:948,
1/a/1220:1222
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_7UNU_1571/a/987:991,
1/a/1038:1039
Minor groove platform
Not in a motif group
geometric
IL_4LFB_039
IL_47078.1
IL_7UNU_1581/a/992:993,
1/a/1035:1037
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_7UNU_1591/a/1000:1004,
1/a/1013:1017
No text annotation
Not in a motif group
IL_7UNU_1601/a/1042:1044,
1/a/1202:1203
Single bulged U
Not in a motif group
geometric
IL_5J7L_046
IL_83039.13
IL_7UNU_1611/a/1044:1050,
1/a/1198:1202
No text annotation
Not in a motif group
homologous
IL_5J7L_047
NA
IL_7UNU_1621/a/1051:1052,
1/a/1193:1197
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_7UNU_1631/a/1054:1055,
1/a/1189:1191
Single bulged A
Not in a motif group
geometric
IL_5J7L_049
IL_37497.2
IL_7UNU_1641/a/1055:1057,
1/a/1187:1189
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_95997.1
IL_7UNU_1651/a/1118:1122,
1/a/1138:1143
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_7UNU_1661/a/1123:1126,
1/a/1136:1137
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_7UNU_1671/a/1152:1155,
1/a/1169:1175
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_7UNU_1681/a/1240:1247,
1/a/1278:1285
No text annotation
Not in a motif group
IL_7UNU_1691/a/1249:1252,
1/a/1271:1276
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_7UNU_1701/a/1253:1257,
1/a/1266:1270
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_7UNU_1711/a/1297:1302,
1/a/1323:1328
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_7UNU_1721/a/1393:1395,
1/a/1495:1498
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_7UNU_1731/a/1395:1398,
1/a/1491:1495
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_7UNU_1741/a/1399:1401,
1/a/1488:1490
No text annotation
Not in a motif group
geometric
IL_5MWI_007
IL_95997.1
IL_7UNU_1751/a/1401:1403,
1/a/1485:1488
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_009
IL_82068.2
IL_7UNU_1761/a/1406:1408,
1/a/1480:1482
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_7UNU_1771/a/1410:1413,
1/a/1475:1478
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_7UNU_1781/a/1424:1429,
1/a/1460:1464
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_7UNU_1791/a/1434:1436,
1/a/1454:1455
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_7UNU_1801/a/1439:1442,
1/a/1449:1451
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7UNU_0011/A/30:31,
1/A/465:472,
1/A/500:501
No text annotation
Not in a motif group
J3_7UNU_0021/A/56:57,
1/A/70:76,
1/A/110:114
No text annotation
Not in a motif group
J3_7UNU_0031/A/673:679,
1/A/763:765,
1/A/781:784
No text annotation
Not in a motif group
J3_7UNU_0041/A/688:690,
1/A/722:726,
1/A/750:753
No text annotation
Not in a motif group
J3_7UNU_0051/A/1045:1047,
1/A/1071:1077,
1/A/1092:1094
No text annotation
Not in a motif group
J3_7UNU_0061/A/1285:1290,
1/A/1615:1617,
1/A/1629:1632
No text annotation
Not in a motif group
J3_7UNU_0071/A/1293:1296,
1/A/1595:1601,
1/A/1610:1612
No text annotation
Not in a motif group
J3_7UNU_0081/A/2078:2080,
1/A/2183:2187,
1/A/2210:2215
No text annotation
Not in a motif group
J3_7UNU_0091/A/2282:2284,
1/A/2308:2310,
1/A/2319:2324
No text annotation
Not in a motif group
J3_7UNU_0101/A/2504:2507,
1/A/2532:2534,
1/A/2548:2554
No text annotation
Not in a motif group
J3_7UNU_0111/A/2776:2778,
1/A/2792:2793,
1/A/2879:2881
No text annotation
Not in a motif group
J3_7UNU_0121/A/2801:2802,
1/A/2818:2823,
1/A/2869:2873
No text annotation
Not in a motif group
J3_7UNU_0131/B/10:16,
1/B/68:70,
1/B/106:110
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA
J3_7UNU_0141/a/46:47,
1/a/355:361,
1/a/387:389
No text annotation
Not in a motif group
homologous
J3_5J7L_001
NA
J3_7UNU_0151/a/580:582,
1/a/645:648,
1/a/748:749
No text annotation
Not in a motif group
J3_7UNU_0161/a/666:667,
1/a/711:719,
1/a/726:728
No text annotation
Not in a motif group
J3_7UNU_0171/a/820:823,
1/a/851:855,
1/a/862:868
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_7UNU_0181/a/937:940,
1/a/1229:1231,
1/a/1331:1334
No text annotation
Not in a motif group
J3_7UNU_0191/a/949:956,
1/a/967:978,
1/a/1215:1219
No text annotation
Not in a motif group
J3_7UNU_0201/a/984:987,
1/a/1039:1041,
1/a/1204:1209
No text annotation
Not in a motif group
homologous
J3_4LFB_005
NA
J3_7UNU_0211/a/997:1000,
1/a/1017:1021,
1/a/1028:1031
No text annotation
Not in a motif group
J3_7UNU_0221/a/1057:1062,
1/a/1101:1107,
1/a/1181:1187
No text annotation
Not in a motif group
J3_7UNU_0231/a/1067:1068,
1/a/1077:1081,
1/a/1092:1096
No text annotation
Not in a motif group
homologous
J3_5J7L_009
NA
J3_7UNU_0241/a/1110:1112,
1/a/1149:1152,
1/a/1175:1178
No text annotation
Not in a motif group
homologous
J3_5J7L_010
NA
J3_7UNU_0251/a/1231:1235,
1/a/1290:1297,
1/a/1328:1331
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA

Problematic loops

No problematic loops


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