RNA 3D Hub //

5T62 Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5T62_0011/A/38:45No text annotation
Not in a motif group		homologous
HL_5TBW_001
HL_06192.2
HL_5T62_0021/A/69:74No text annotation
Not in a motif group		homologous
HL_8C3A_002
HL_02862.2
HL_5T62_0031/A/90:96No text annotation
Not in a motif group		homologous
HL_5TBW_003
HL_67216.7
HL_5T62_0041/A/132:136No text annotation
Not in a motif group		homologous
HL_8C3A_004
HL_98426.1
HL_5T62_0051/A/194:201No text annotation
Not in a motif group		homologous
HL_8C3A_005
HL_89380.2
HL_5T62_0061/A/208:212No text annotation
Not in a motif group		homologous
HL_5TBW_006
HL_98984.2
HL_5T62_0071/A/216:224No text annotation
Not in a motif group		homologous
HL_8C3A_007
HL_08002.8
HL_5T62_0081/A/278:287No text annotation
Not in a motif group		homologous
HL_5TBW_008
HL_71554.2
HL_5T62_0101/A/357:362Other HL
Not in a motif group		homologous
HL_5TBW_010
HL_42097.1
HL_5T62_0111/A/382:387No text annotation
Not in a motif group		homologous
HL_8C3A_011
HL_42097.1
HL_5T62_0121/A/540:551No text annotation
Not in a motif group
HL_5T62_0131/A/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_42097.1
HL_5T62_0141/A/640:649T-loop with 2 stacked bulged bases
Not in a motif group		homologous
HL_5TBW_014
HL_89380.2
HL_5T62_0151/A/686:694No text annotation
Not in a motif group		homologous
HL_5TBW_015
HL_03345.1
HL_5T62_0171/A/732:737GNRA
Not in a motif group		homologous
HL_5TBW_017
HL_42097.1
HL_5T62_0221/A/958:963No text annotation
Not in a motif group		homologous
HL_5TBW_022
HL_94803.1
HL_5T62_0261/A/1148:1155No text annotation
Not in a motif group		homologous
HL_5TBW_026
HL_64430.2
HL_5T62_0291/A/1347:1357No text annotation
Not in a motif group		homologous
HL_5TBW_029
HL_89098.1
HL_5T62_0301/A/1403:1408GNRA
Not in a motif group		homologous
HL_5TBW_030
HL_42097.1
HL_5T62_0661/A/3025:3030GNRA
Not in a motif group		geometric
HL_5J7L_197
HL_42097.1
HL_5T62_0671/A/3068:3073Ribsomal LSU H95
Not in a motif group		homologous
HL_5TBW_066
HL_46680.1
HL_5T62_0681/A/3110:3124No text annotation
Not in a motif group		homologous
HL_5TBW_067
HL_56677.7
HL_5T62_0691/A/3194:3197No text annotation
Not in a motif group		geometric
HL_6U8D_003
HL_89098.1
HL_5T62_0711/A/3303:3311No text annotation
Not in a motif group		geometric
HL_5TBW_070
HL_27930.1
HL_5T62_0731/B/36:41No text annotation
Not in a motif group		homologous
HL_5TBW_185
HL_87939.1
HL_5T62_0741/B/88:93GNRA
Not in a motif group		homologous
HL_5TBW_186
HL_42097.1
HL_5T62_0751/C/69:89No text annotation
Not in a motif group
HL_5T62_0761/C/108:114No text annotation
Not in a motif group		homologous
HL_5TBW_075
HL_87939.1
HL_5T62_0771/C/124:129No text annotation
Not in a motif group		homologous
HL_5TBW_076
HL_96851.2

Problematic loops

#loop idProblemSequence
HL_5T62_009No text annotation
HL_5T62_016No text annotation
HL_5T62_018No text annotation
HL_5T62_019GNRA
HL_5T62_020No text annotation
HL_5T62_021No text annotation
HL_5T62_023GNRA
HL_5T62_024No text annotation
HL_5T62_025No text annotation
HL_5T62_027No text annotation
HL_5T62_028No text annotation
HL_5T62_031No text annotation
HL_5T62_032No text annotation
HL_5T62_033No text annotation
HL_5T62_034No text annotation
HL_5T62_035No text annotation
HL_5T62_036GNRA
HL_5T62_037No text annotation
HL_5T62_038No text annotation
HL_5T62_039No text annotation
HL_5T62_040No text annotation
HL_5T62_041No text annotation
HL_5T62_042GNRA with one bulged base
HL_5T62_043UNCG
HL_5T62_044No text annotation
HL_5T62_045No text annotation
HL_5T62_046No text annotation
HL_5T62_047No text annotation
HL_5T62_048Other HL
HL_5T62_049No text annotation
HL_5T62_050No text annotation
HL_5T62_051No text annotation
HL_5T62_052No text annotation
HL_5T62_053No text annotation
HL_5T62_054No text annotation
HL_5T62_055No text annotation
HL_5T62_056No text annotation
HL_5T62_057No text annotation
HL_5T62_058No text annotation
HL_5T62_059No text annotation
HL_5T62_060GNRA
HL_5T62_061No text annotation
HL_5T62_062No text annotation
HL_5T62_063No text annotation
HL_5T62_064No text annotation
HL_5T62_065GNRA
HL_5T62_070No text annotation
HL_5T62_072No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5T62_0011/A/3:4,
1/C/155:156		No text annotation
Not in a motif group
IL_5T62_0021/A/7:8,
1/C/150:152		Single bulged C
Not in a motif group		homologous
IL_5TBW_002
IL_61258.12
IL_5T62_0031/A/13:15,
1/C/144:145		No text annotation
Not in a motif group		homologous
IL_8C3A_003
IL_83039.13
IL_5T62_0041/A/27:28,
1/A/56:58		Single stack bend
Not in a motif group		homologous
IL_5TBW_004
IL_76488.2
IL_5T62_0051/A/31:38,
1/A/45:53		tSH-tHW-tHH-tHS
Not in a motif group		geometric
IL_5TBW_005
IL_35728.2
IL_5T62_0061/A/82:89,
1/A/97:103		No text annotation
Not in a motif group		homologous
IL_5TBW_006
IL_88613.1
IL_5T62_0071/A/123:124,
1/A/144:149		No text annotation
Not in a motif group		geometric
IL_5TBW_007
IL_19724.2
IL_5T62_0081/A/125:127,
1/A/141:143		No text annotation
Not in a motif group		homologous
IL_8C3A_008
IL_95997.1
IL_5T62_0101/A/169:172,
1/A/247:253		No text annotation
Not in a motif group
IL_5T62_0111/A/172:174,
1/A/244:247		No text annotation
Not in a motif group		geometric
IL_4N0T_004
IL_46796.1
IL_5T62_0121/A/174:179,
1/A/237:244		No text annotation
Not in a motif group
IL_5T62_0131/A/189:191,
1/A/204:205		No text annotation
Not in a motif group		homologous
IL_8C3A_013
IL_83039.13
IL_5T62_0141/A/337:339,
1/C/25:26		Single bulged A
Not in a motif group		homologous
IL_5TBW_013
IL_37497.2
IL_5T62_0151/A/376:379,
1/A/390:403		No text annotation
Not in a motif group		homologous
IL_8C3A_015
IL_60992.6
IL_5T62_0161/A/404:410,
1/C/13:19		Triple sheared with non-canonical cWW
Not in a motif group		geometric
IL_5TBW_015
IL_66414.6
IL_5T62_0171/A/429:431,
1/A/628:630		No text annotation
Not in a motif group		homologous
IL_5TBW_016
IL_51629.2
IL_5T62_0191/A/512:513,
1/A/577:579		Single bulged A
Not in a motif group		homologous
IL_5TBW_018
IL_37497.2
IL_5T62_0201/A/517:528,
1/A/564:573		No text annotation
Not in a motif group
IL_5T62_0211/A/531:538,
1/A/553:561		No text annotation
Not in a motif group		homologous
IL_5TBW_020
IL_07703.1
IL_5T62_0221/A/668:670,
1/A/792:794		No text annotation
Not in a motif group		homologous
IL_8C3A_023
IL_95997.1
IL_5T62_0231/A/680:684,
1/A/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_74284.1
IL_5T62_0241/A/725:729,
1/A/740:745		Triple sheared related
Not in a motif group		geometric
IL_5J7L_063
IL_64879.2
IL_5T62_0251/A/752:753,
1/A/779:781		Single bulged A
Not in a motif group		homologous
IL_5TBW_024
IL_37497.2
IL_5T62_0261/A/755:756,
1/A/775:777		Single bulged U
Not in a motif group		homologous
IL_5TBW_025
IL_83039.13
IL_5T62_0281/A/803:805,
1/A/938:940		No text annotation
Not in a motif group		homologous
IL_5TBW_027
IL_95997.1
IL_5T62_0291/A/805:809,
1/A/931:938		No text annotation
Not in a motif group		geometric
IL_5TBW_028
IL_17470.6
IL_5T62_0351/A/954:956,
1/A/965:967		No text annotation
Not in a motif group		homologous
IL_5TBW_034
IL_95997.1
IL_5T62_0361/A/969:970,
1/A/1111:1113		Single stack bend
Not in a motif group		homologous
IL_5TBW_035
IL_76488.2
IL_5T62_0371/A/977:981,
1/A/1102:1104		No text annotation
Not in a motif group		homologous
IL_5TBW_036
IL_67474.4
IL_5T62_0381/A/983:985,
1/A/1099:1100		Single bulged G
Not in a motif group		homologous
IL_5TBW_037
IL_00225.2
IL_5T62_0471/A/1120:1122,
1/A/1136:1138		No text annotation
Not in a motif group		homologous
IL_5TBW_046
IL_95997.1
IL_5T62_0481/A/1167:1171,
1/A/1328:1332		UAA/GAN
Not in a motif group		homologous
IL_5TBW_048
IL_89002.2
IL_5T62_0491/A/1173:1180,
1/A/1325:1326		SSU/LSU pseudoknot
Not in a motif group		geometric
IL_5TBW_049
IL_15861.7
IL_5T62_0501/A/1180:1182,
1/A/1324:1325		Single bulged U
Not in a motif group		homologous
IL_5TBW_050
IL_83039.13
IL_5T62_0531/A/1207:1209,
1/A/1296:1297		Single bulged U
Not in a motif group		homologous
IL_5TBW_053
IL_83039.13
IL_5T62_0561/A/1376:1378,
1/A/1428:1431		No text annotation
Not in a motif group		homologous
IL_8C3A_061
IL_52767.2
IL_5T62_0581/A/1388:1395,
1/A/1415:1419		Kink-turn
Not in a motif group		homologous
IL_5TBW_059
IL_70923.2
IL_5T62_0601/A/1444:1450,
1/A/2354:2359		7x6 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_061
IL_76042.2
IL_5T62_1151/A/3004:3007,
1/A/3139:3144		Double sheared
Not in a motif group		homologous
IL_5TBW_114
IL_09705.9
IL_5T62_1161/A/3012:3014,
1/A/3040:3042		No text annotation
Not in a motif group		homologous
IL_5TBW_115
IL_95997.1
IL_5T62_1171/A/3018:3025,
1/A/3030:3036		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_116
IL_04346.7
IL_5T62_1181/A/3047:3051,
1/A/3091:3094		Major groove minor groove platform with tHH
Not in a motif group		homologous
IL_5TBW_117
IL_37712.2
IL_5T62_1191/A/3054:3059,
1/A/3084:3088		UAA/GAN related
Not in a motif group		homologous
IL_5TBW_118
IL_17136.1
IL_5T62_1211/A/3103:3107,
1/A/3127:3131		No text annotation
Not in a motif group		homologous
IL_8C3A_129
IL_89002.2
IL_5T62_1221/A/3163:3166,
1/A/3284:3287		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_1MFQ_004
IL_30621.2
IL_5T62_1241/A/3177:3179,
1/A/3210:3211		Single bulged A
Not in a motif group		geometric
IL_5TBW_123
IL_37497.2
IL_5T62_1251/A/3179:3188,
1/A/3204:3210		No text annotation
Not in a motif group		homologous
IL_5TBW_124
IL_15174.1
IL_5T62_1261/A/3193:3194,
1/A/3197:3199		Single bulged U
Not in a motif group		homologous
IL_5TBW_125
IL_83039.13
IL_5T62_1301/A/3300:3303,
1/A/3311:3314		Tandem non-canonical cWW pairs
Not in a motif group		homologous
IL_5TBW_129
IL_30621.2
IL_5T62_1311/A/3318:3320,
1/A/3387:3388		Single bulged U
Not in a motif group		homologous
IL_5TBW_130
IL_83039.13
IL_5T62_1321/A/3324:3325,
1/A/3381:3383		Single bulged U
Not in a motif group		homologous
IL_5TBW_131
IL_83039.13
IL_5T62_1341/A/3332:3337,
1/A/3367:3371		No text annotation
Not in a motif group		homologous
IL_8C3A_139
IL_83162.5
IL_5T62_1381/B/15:16,
1/B/63:65		Single bulged A
Not in a motif group		homologous
IL_5TBW_372
IL_37497.2
IL_5T62_1391/B/21:27,
1/B/53:58		No text annotation
Not in a motif group		homologous
IL_5TBW_373
IL_10207.2
IL_5T62_1401/B/28:29,
1/B/49:52		Minor groove platform
Not in a motif group		geometric
IL_5TBW_374
IL_63797.2
IL_5T62_1411/B/29:30,
1/B/47:49		Single stack bend
Not in a motif group		homologous
IL_5TBW_375
IL_76488.2
IL_5T62_1421/B/32:36,
1/B/41:45		Symmetric double minor groove platform
Not in a motif group		geometric
IL_5TBW_376
IL_58103.6
IL_5T62_1431/B/72:80,
1/B/100:106		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_377
IL_04346.7
IL_5T62_1441/B/84:87,
1/B/94:96		No text annotation
Not in a motif group		homologous
IL_5TBW_378
IL_95997.1
IL_5T62_1451/C/44:64,
1/C/96:100		No text annotation
Not in a motif group		geometric
IL_5TBW_144
IL_44998.1
IL_5T62_1461/C/64:66,
1/C/93:96		Isolated non-canonical cWW with bulges
Not in a motif group		homologous
IL_5TBW_145
IL_82068.2
IL_5T62_1471/C/68:69,
1/C/89:91		Single bulged U
Not in a motif group		geometric
IL_5TBW_146
IL_83039.13

Problematic loops

#loop idProblemSequence
IL_5T62_009Other IL
IL_5T62_018No text annotation
IL_5T62_027No text annotation
IL_5T62_030Single bulged G
IL_5T62_031Triple sheared
IL_5T62_032No text annotation
IL_5T62_033Single bulged U
IL_5T62_034Multiple bulged bases
IL_5T62_0397x7 Sarcin-Ricin with intercalated A; G-bulge
IL_5T62_040Minor groove platform
IL_5T62_041No text annotation
IL_5T62_042Tandem non-canonical cWW pairs
IL_5T62_043No text annotation
IL_5T62_044No text annotation
IL_5T62_045No text annotation
IL_5T62_046Single bulged A
IL_5T62_051No text annotation
IL_5T62_052No text annotation
IL_5T62_054Kink-turn
IL_5T62_055No text annotation
IL_5T62_057No text annotation
IL_5T62_059Single bulged A
IL_5T62_061No text annotation
IL_5T62_062No text annotation
IL_5T62_063No text annotation
IL_5T62_064Multiple bulged bases
IL_5T62_065No text annotation
IL_5T62_066No text annotation
IL_5T62_067No text annotation
IL_5T62_068No text annotation
IL_5T62_069Single stack bend
IL_5T62_070No text annotation
IL_5T62_071No text annotation
IL_5T62_072Kink-turn
IL_5T62_073No text annotation
IL_5T62_074Isolated tWW turn
IL_5T62_075No text annotation
IL_5T62_076Intercalated tWH
IL_5T62_077tSH-tSH-tHH-tHS
IL_5T62_078No text annotation
IL_5T62_079No text annotation
IL_5T62_080Single stack bend
IL_5T62_081Single bulged A
IL_5T62_082Kink-turn related
IL_5T62_083Major groove outside cWW, minor groove, intercalation pocket
IL_5T62_084No text annotation
IL_5T62_085Single bulged U
IL_5T62_086Major groove platform with extra pair
IL_5T62_087No text annotation
IL_5T62_088Isolated cWH basepair
IL_5T62_089Multiple bulged bases
IL_5T62_090No text annotation
IL_5T62_091Major groove platform with extra pair
IL_5T62_092No text annotation
IL_5T62_093Single bulged U
IL_5T62_094No text annotation
IL_5T62_095No text annotation
IL_5T62_096Single stack bend
IL_5T62_097No text annotation
IL_5T62_098No text annotation
IL_5T62_099No text annotation
IL_5T62_100Single bulged A
IL_5T62_101Isolated tHS basepair with bulges
IL_5T62_102Tandem non-canonical cWW pairs
IL_5T62_103No text annotation
IL_5T62_104No text annotation
IL_5T62_105Major groove platform
IL_5T62_106No text annotation
IL_5T62_107Triple sheared
IL_5T62_108No text annotation
IL_5T62_109Isolated non-canonical cWW with bulges
IL_5T62_110Multiple bulged bases
IL_5T62_111No text annotation
IL_5T62_112Minor groove platform with intercalation
IL_5T62_113No text annotation
IL_5T62_114Single bulged A
IL_5T62_120No text annotation
IL_5T62_123No text annotation
IL_5T62_127No text annotation
IL_5T62_128No text annotation
IL_5T62_129Tandem non-canonical cWW pairs
IL_5T62_133No text annotation
IL_5T62_135No text annotation
IL_5T62_136tWS-tSW
IL_5T62_137Multiple bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5T62_0021/A/369:376,
1/A/403:404,
1/C/19:20		No text annotation
Not in a motif group		homologous
J3_5TBW_002
NA
J3_5T62_0031/A/502:503,
1/A/588:597,
1/A/606:611		No text annotation
Not in a motif group		homologous
J3_5TBW_003
NA
J3_5T62_0151/A/3298:3300,
1/A/3314:3318,
1/A/3388:3390		No text annotation
Not in a motif group		homologous
J3_5TBW_015
NA
J3_5T62_0161/B/9:14,
1/B/66:68,
1/B/110:112		No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
J3_5T62_001No text annotation
J3_5T62_004No text annotation
J3_5T62_005No text annotation
J3_5T62_006No text annotation
J3_5T62_007No text annotation
J3_5T62_008No text annotation
J3_5T62_009No text annotation
J3_5T62_010No text annotation
J3_5T62_011No text annotation
J3_5T62_012No text annotation
J3_5T62_013No text annotation
J3_5T62_014No text annotation

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