6DDD Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6DDD_001 | 1/1/67:74 | No text annotation Not in a motif group | geometric HL_4P5J_004 HL_86769.3 | |
| HL_6DDD_002 | 1/1/87:95 | No text annotation Not in a motif group | homologous HL_4WF9_002 HL_96598.1 | |
| HL_6DDD_003 | 1/1/122:127 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_6DDD_004 | 1/1/136:143 | No text annotation Not in a motif group | homologous HL_4WF9_004 HL_84085.2 | |
| HL_6DDD_005 | 1/1/158:170 | No text annotation Not in a motif group | ||
| HL_6DDD_006 | 1/1/197:204 | No text annotation Not in a motif group | geometric HL_7A0S_006 HL_06192.2 | |
| HL_6DDD_007 | 1/1/228:233 | No text annotation Not in a motif group | homologous HL_4WF9_007 HL_02862.2 | |
| HL_6DDD_008 | 1/1/249:255 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_6DDD_009 | 1/1/348:355 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_6DDD_010 | 1/1/362:366 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_6DDD_011 | 1/1/370:378 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_6DDD_012 | 1/1/427:439 | No text annotation Not in a motif group | ||
| HL_6DDD_013 | 1/1/456:463 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_6DDD_014 | 1/1/508:513 | No text annotation Not in a motif group | homologous HL_7A0S_015 HL_42097.1 | |
| HL_6DDD_015 | 1/1/533:538 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_6DDD_016 | 1/1/587:594 | No text annotation Not in a motif group | homologous HL_4WF9_017 HL_50318.1 | |
| HL_6DDD_017 | 1/1/609:618 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_89380.2 | |
| HL_6DDD_018 | 1/1/655:661 | No text annotation Not in a motif group | geometric HL_5J7L_179 HL_42097.1 | |
| HL_6DDD_019 | 1/1/674:679 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_6DDD_020 | 1/1/686:692 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_6DDD_022 | 1/1/789:798 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_6DDD_023 | 1/1/824:830 | No text annotation Not in a motif group | homologous HL_4WF9_024 HL_74322.1 | |
| HL_6DDD_024 | 1/1/871:876 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_6DDD_026 | 1/1/999:1006 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_6DDD_027 | 1/1/1022:1029 | No text annotation Not in a motif group | homologous HL_4WF9_028 HL_64430.2 | |
| HL_6DDD_029 | 1/1/1213:1219 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6DDD_030 | 1/1/1260:1265 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
| HL_6DDD_031 | 1/1/1318:1326 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_032 HL_89380.2 | |
| HL_6DDD_032 | 1/1/1361:1367 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_6DDD_033 | 1/1/1400:1405 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_6DDD_034 | 1/1/1426:1435 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_6DDD_035 | 1/1/1492:1506 | No text annotation Not in a motif group | ||
| HL_6DDD_037 | 1/1/1612:1615 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_6DDD_038 | 1/1/1656:1663 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_6DDD_039 | 1/1/1673:1681 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_6DDD_040 | 1/1/1735:1740 | UNCG Not in a motif group | geometric HL_4V9F_044 HL_03562.2 | |
| HL_6DDD_041 | 1/1/1762:1767 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_6DDD_042 | 1/1/1779:1783 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_6DDD_043 | 1/1/1804:1814 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_6DDD_044 | 1/1/1833:1838 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_6DDD_045 | 1/1/1895:1900 | No text annotation Not in a motif group | ||
| HL_6DDD_046 | 1/1/1937:1947 | No text annotation Not in a motif group | ||
| HL_6DDD_047 | 1/1/1976:1984 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_6DDD_048 | 1/1/2054:2063 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_6DDD_049 | 1/1/2236:2242 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_6DDD_050 | 1/1/2275:2283 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_6DDD_051 | 1/1/2291:2303 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_6DDD_053 | 1/1/2350:2359 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_6DDD_054 | 1/1/2382:2389 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_6DDD_055 | 1/1/2401:2406 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_6DDD_056 | 1/1/2431:2440 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_6DDD_057 | 1/1/2498:2506 | No text annotation Not in a motif group | homologous HL_7A0S_059 HL_06192.2 | |
| HL_6DDD_058 | 1/1/2555:2562 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_6DDD_059 | 1/1/2578:2584 | No text annotation Not in a motif group | homologous HL_7A0S_061 HL_43656.2 | |
| HL_6DDD_060 | 1/1/2621:2626 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_6DDD_061 | 1/1/2685:2690 | No text annotation Not in a motif group | geometric HL_3OXE_002 HL_42097.1 | |
| HL_6DDD_062 | 1/1/2728:2733 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_6DDD_063 | 1/1/2772:2786 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_6DDD_065 | 1/1/2839:2847 | No text annotation Not in a motif group | homologous HL_4WF9_064 HL_27930.1 | |
| HL_6DDD_066 | 1/1/2876:2881 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_6DDD_067 | 1/2/36:42 | No text annotation Not in a motif group | homologous HL_4V9F_071 HL_87939.1 | |
| HL_6DDD_068 | 1/2/77:92 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6DDD_021 | No text annotation | ||
| HL_6DDD_025 | No text annotation | ||
| HL_6DDD_028 | No text annotation | ||
| HL_6DDD_036 | No text annotation | ||
| HL_6DDD_052 | No text annotation | ||
| HL_6DDD_064 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6DDD_001 | 1/1/24:30, 1/1/555:561 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_4WF9_001 IL_66414.6 | |
| IL_6DDD_002 | 1/1/36:37, 1/1/488:490 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_6DDD_003 | 1/1/42:45, 1/1/479:483 | No text annotation Not in a motif group | ||
| IL_6DDD_004 | 1/1/81:85, 1/1/97:104 | Kink-turn Not in a motif group | homologous IL_4WF9_004 IL_45067.2 | |
| IL_6DDD_005 | 1/1/152:153, 1/1/175:177 | Single bulged A Not in a motif group | homologous IL_4WF9_006 IL_37497.2 | |
| IL_6DDD_006 | 1/1/186:187, 1/1/215:217 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_6DDD_007 | 1/1/190:197, 1/1/204:212 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_008 IL_35728.2 | |
| IL_6DDD_008 | 1/1/241:248, 1/1/256:262 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_009 IL_04346.7 | |
| IL_6DDD_009 | 1/1/305:306, 1/1/409:412 | Minor groove platform Not in a motif group | geometric IL_3RW6_003 IL_93353.1 | |
| IL_6DDD_010 | 1/1/328:331, 1/1/395:399 | No text annotation Not in a motif group | ||
| IL_6DDD_011 | 1/1/336:338, 1/1/386:390 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.1 | |
| IL_6DDD_012 | 1/1/527:530, 1/1/541:554 | No text annotation Not in a motif group | geometric IL_5TBW_014 IL_60992.6 | |
| IL_6DDD_013 | 1/1/581:584, 1/1/597:600 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_6DDD_014 | 1/1/607:609, 1/1/618:620 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_95997.1 | |
| IL_6DDD_015 | 1/1/638:640, 1/1/705:707 | No text annotation Not in a motif group | homologous IL_4WF9_018 IL_51629.2 | |
| IL_6DDD_016 | 1/1/649:653, 1/1/663:667 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_6DDD_017 | 1/1/717:719, 1/1/851:853 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_6DDD_018 | 1/1/719:723, 1/1/844:851 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4WF9_021 IL_17470.6 | |
| IL_6DDD_019 | 1/1/742:743, 1/1/808:810 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.2 | |
| IL_6DDD_020 | 1/1/747:748, 1/1/773:775 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_6DDD_021 | 1/1/748:752, 1/1/769:773 | Triple sheared Not in a motif group | homologous IL_5J7L_263 IL_56467.8 | |
| IL_6DDD_022 | 1/1/783:785, 1/1/802:803 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.1 | |
| IL_6DDD_023 | 1/1/820:822, 1/1/832:836 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_6DDD_024 | 1/1/882:883, 1/1/984:986 | Single stack bend Not in a motif group | homologous IL_7A0S_022 IL_92001.1 | |
| IL_6DDD_025 | 1/1/889:893, 1/1/975:978 | No text annotation Not in a motif group | homologous IL_4WF9_029 IL_06300.1 | |
| IL_6DDD_026 | 1/1/897:898, 1/1/969:971 | No text annotation Not in a motif group | ||
| IL_6DDD_027 | 1/1/901:907, 1/1/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_4WF9_031 IL_93830.3 | |
| IL_6DDD_028 | 1/1/907:908, 1/1/958:960 | Minor groove platform Not in a motif group | homologous IL_4WF9_032 IL_42622.2 | |
| IL_6DDD_029 | 1/1/909:913, 1/1/954:957 | C-loop Not in a motif group | homologous IL_7A0S_029 IL_02509.1 | |
| IL_6DDD_030 | 1/1/1038:1040, 1/1/1203:1204 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_6DDD_031 | 1/1/1042:1046, 1/1/1197:1201 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
| IL_6DDD_032 | 1/1/1048:1055, 1/1/1194:1195 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_6DDD_033 | 1/1/1055:1057, 1/1/1193:1194 | Single bulged U Not in a motif group | geometric IL_7A0S_035 IL_83039.13 | |
| IL_6DDD_034 | 1/1/1062:1068, 1/1/1184:1188 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_6DDD_035 | 1/1/1068:1074, 1/1/1168:1184 | No text annotation Not in a motif group | geometric IL_4WF9_040 IL_50715.1 | |
| IL_6DDD_036 | 1/1/1075:1078, 1/1/1165:1167 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7A0S_038 IL_82068.2 | |
| IL_6DDD_037 | 1/1/1081:1083, 1/1/1160:1162 | No text annotation Not in a motif group | homologous IL_4WF9_042 IL_95997.1 | |
| IL_6DDD_038 | 1/1/1235:1237, 1/1/1285:1288 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_6DDD_039 | 1/1/1243:1245, 1/1/1277:1279 | Isolated cWH basepair Not in a motif group | homologous IL_4WF9_045 IL_51629.2 | |
| IL_6DDD_040 | 1/1/1246:1253, 1/1/1272:1276 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_6DDD_041 | 1/1/1257:1259, 1/1/1266:1268 | Intercalated cWW Not in a motif group | homologous IL_4WF9_047 IL_82842.2 | |
| IL_6DDD_042 | 1/1/1300:1307, 1/1/2038:2044 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_048 IL_04346.7 | |
| IL_6DDD_043 | 1/1/1356:1360, 1/1/1368:1370 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_4WF9_050 IL_37712.2 | |
| IL_6DDD_044 | 1/1/1388:1392, 1/1/1413:1417 | UAA/GAN Not in a motif group | homologous IL_7A0S_048 IL_89002.2 | |
| IL_6DDD_045 | 1/1/1394:1398, 1/1/1407:1411 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_6DDD_046 | 1/1/1448:1451, 1/1/1631:1635 | Double sheared Not in a motif group | geometric IL_6E7L_002 IL_10484.1 | |
| IL_6DDD_048 | 1/1/1461:1465, 1/1/1624:1627 | Other IL Not in a motif group | homologous IL_4WF9_054 IL_04059.1 | |
| IL_6DDD_049 | 1/1/1476:1479, 1/1/1604:1608 | No text annotation Not in a motif group | ||
| IL_6DDD_050 | 1/1/1481:1484, 1/1/1598:1602 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_6DDD_051 | 1/1/1511:1516, 1/1/1564:1570 | No text annotation Not in a motif group | homologous IL_4WF9_058 IL_88190.1 | |
| IL_6DDD_052 | 1/1/1518:1523, 1/1/1557:1562 | No text annotation Not in a motif group | geometric IL_4N0T_001 IL_86929.2 | |
| IL_6DDD_053 | 1/1/1695:1700, 1/1/2031:2033 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.2 | |
| IL_6DDD_054 | 1/1/1707:1709, 1/1/2022:2024 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
| IL_6DDD_055 | 1/1/1710:1713, 1/1/2020:2021 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_6DDD_056 | 1/1/1713:1718, 1/1/2017:2020 | Intercalated tWH Not in a motif group | homologous IL_4WF9_065 IL_82842.2 | |
| IL_6DDD_057 | 1/1/1730:1735, 1/1/1740:1746 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_6DDD_058 | 1/1/1757:1761, 1/1/1768:1772 | No text annotation Not in a motif group | ||
| IL_6DDD_059 | 1/1/1797:1798, 1/1/2007:2009 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
| IL_6DDD_060 | 1/1/1825:1831, 1/1/1840:1848 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_6DDD_061 | 1/1/1864:1867, 1/1/1929:1930 | No text annotation Not in a motif group | homologous IL_4WF9_070 NA | |
| IL_6DDD_062 | 1/1/1868:1869, 1/1/1925:1928 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_067 IL_16396.2 | |
| IL_6DDD_063 | 1/1/1873:1876, 1/1/1920:1921 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_6DDD_064 | 1/1/1877:1882, 1/1/1914:1919 | No text annotation Not in a motif group | ||
| IL_6DDD_065 | 1/1/1883:1887, 1/1/1909:1913 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_6DDD_066 | 1/1/1891:1894, 1/1/1901:1905 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_6DDD_067 | 1/1/1960:1961, 1/1/1991:1994 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_59677.2 | |
| IL_6DDD_068 | 1/1/1961:1972, 1/1/1988:1991 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_6DDD_069 | 1/1/2077:2079, 1/1/2644:2645 | Major groove platform Not in a motif group | homologous IL_7A0S_073 IL_27635.1 | |
| IL_6DDD_070 | 1/1/2081:2084, 1/1/2638:2642 | No text annotation Not in a motif group | ||
| IL_6DDD_071 | 1/1/2094:2096, 1/1/2469:2470 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_6DDD_072 | 1/1/2097:2098, 1/1/2465:2468 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_6DDD_073 | 1/1/2108:2110, 1/1/2263:2266 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_082 IL_38958.7 | |
| IL_6DDD_074 | 1/1/2123:2125, 1/1/2218:2220 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_6DDD_075 | 1/1/2229:2231, 1/1/2247:2248 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_6DDD_076 | 1/1/2324:2326, 1/1/2344:2348 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 IL_38958.7 | |
| IL_6DDD_077 | 1/1/2377:2380, 1/1/2391:2394 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_6DDD_078 | 1/1/2428:2430, 1/1/2441:2442 | No text annotation Not in a motif group | ||
| IL_6DDD_079 | 1/1/2480:2481, 1/1/2525:2527 | Single stack bend Not in a motif group | homologous IL_4WF9_089 IL_76488.2 | |
| IL_6DDD_080 | 1/1/2481:2482, 1/1/2523:2525 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
| IL_6DDD_081 | 1/1/2484:2486, 1/1/2520:2521 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.1 | |
| IL_6DDD_082 | 1/1/2486:2488, 1/1/2516:2520 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
| IL_6DDD_083 | 1/1/2493:2497, 1/1/2507:2511 | Triple sheared Not in a motif group | homologous IL_4WF9_093 IL_56467.8 | |
| IL_6DDD_084 | 1/1/2534:2535, 1/1/2607:2609 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_6DDD_085 | 1/1/2537:2539, 1/1/2601:2605 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4WF9_095 IL_90933.2 | |
| IL_6DDD_086 | 1/1/2539:2540, 1/1/2598:2601 | No text annotation Not in a motif group | homologous IL_4WF9_096 IL_71530.2 | |
| IL_6DDD_087 | 1/1/2549:2550, 1/1/2567:2570 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_6DDD_088 | 1/1/2618:2619, 1/1/2628:2630 | Single bulged A Not in a motif group | homologous IL_4WF9_098 IL_69996.1 | |
| IL_6DDD_089 | 1/1/2663:2667, 1/1/2801:2809 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_6DDD_090 | 1/1/2679:2685, 1/1/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7A0S_094 IL_16458.1 | |
| IL_6DDD_091 | 1/1/2707:2711, 1/1/2752:2754 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_6DDD_092 | 1/1/2714:2718, 1/1/2745:2749 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_6DDD_093 | 1/1/2722:2723, 1/1/2738:2741 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_6DDD_094 | 1/1/2764:2769, 1/1/2789:2794 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7A0S_098 IL_49767.5 | |
| IL_6DDD_095 | 1/1/2857:2859, 1/1/2898:2901 | No text annotation Not in a motif group | geometric IL_7A0S_092 IL_82842.2 | |
| IL_6DDD_096 | 1/1/2863:2865, 1/1/2891:2894 | No text annotation Not in a motif group | homologous IL_4WF9_107 IL_02284.5 | |
| IL_6DDD_097 | 1/1/2867:2872, 1/1/2885:2889 | No text annotation Not in a motif group | homologous IL_4WF9_108 IL_83162.5 | |
| IL_6DDD_098 | 1/2/15:16, 1/2/63:65 | Major groove intercalation Not in a motif group | homologous IL_4V9F_101 IL_37497.2 | |
| IL_6DDD_099 | 1/2/21:27, 1/2/53:58 | No text annotation Not in a motif group | ||
| IL_6DDD_100 | 1/2/28:29, 1/2/49:52 | Minor groove platform Not in a motif group | geometric IL_7RQB_073 IL_88739.1 | |
| IL_6DDD_101 | 1/2/32:36, 1/2/42:46 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6DDD_047 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6DDD_001 | 1/1/30:31, 1/1/520:527, 1/1/554:555 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_6DDD_002 | 1/1/56:67, 1/1/74:76, 1/1/109:113 | No text annotation Not in a motif group | ||
| J3_6DDD_003 | 1/1/272:276, 1/1/295:302, 1/1/415:416 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_6DDD_004 | 1/1/728:734, 1/1/818:820, 1/1/836:839 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_6DDD_005 | 1/1/743:745, 1/1/777:781, 1/1/805:808 | No text annotation Not in a motif group | homologous J3_4WF9_003 NA | |
| J3_6DDD_006 | 1/1/1335:1340, 1/1/1669:1671, 1/1/1683:1686 | No text annotation Not in a motif group | homologous J3_4WF9_004 NA | |
| J3_6DDD_007 | 1/1/1342:1346, 1/1/1649:1655, 1/1/1664:1667 | No text annotation Not in a motif group | homologous J3_4WF9_005 NA | |
| J3_6DDD_008 | 1/1/1381:1387, 1/1/1418:1422, 1/1/1439:1440 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_6DDD_009 | 1/1/2118:2120, 1/1/2223:2228, 1/1/2249:2255 | No text annotation Not in a motif group | homologous J3_4WF9_007 NA | |
| J3_6DDD_010 | 1/1/2322:2324, 1/1/2348:2350, 1/1/2359:2364 | No text annotation Not in a motif group | ||
| J3_6DDD_011 | 1/1/2544:2547, 1/1/2572:2574, 1/1/2588:2594 | No text annotation Not in a motif group | homologous J3_4WF9_009 NA | |
| J3_6DDD_012 | 1/1/2816:2817, 1/1/2826:2831, 1/1/2909:2913 | No text annotation Not in a motif group | homologous J3_7RQB_013 NA | |
| J3_6DDD_013 | 1/1/2834:2835, 1/1/2851:2856, 1/1/2902:2906 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA |
Problematic loops
No problematic loops
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