Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6OGI_0011/1/59:68Pseudoknot with intercalation
homologous
HL_7A0S_001
HL_93438.2
HL_6OGI_0021/1/87:95No text annotation
homologous
HL_5J7L_135
HL_80241.1
HL_6OGI_0031/1/123:128No text annotation
homologous
HL_5J7L_136
HL_82710.2
HL_6OGI_0041/1/137:142No text annotation
HL_6OGI_0051/1/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_6OGI_0061/1/194:201No text annotation
homologous
HL_7RQB_006
NA
HL_6OGI_0071/1/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_6OGI_0081/1/246:252No text annotation
homologous
HL_5J7L_141
HL_37369.2
HL_6OGI_0091/1/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
HL_01609.3
HL_6OGI_0101/1/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_6OGI_0111/1/382:392No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_6OGI_0121/1/410:417Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.3
HL_6OGI_0131/1/462:467GNRA
homologous
HL_4WF9_015
HL_37824.7
HL_6OGI_0141/1/487:493GNRA
homologous
HL_5J7L_148
HL_37824.7
HL_6OGI_1051/1/545:548Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_6OGI_0161/1/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
HL_28252.8
HL_6OGI_0171/1/611:617No text annotation
homologous
HL_5J7L_151
HL_80922.2
HL_6OGI_0181/1/629:634GNRA
homologous
HL_5J7L_152
HL_37824.7
HL_6OGI_1061/1/641:647No text annotation
homologous
HL_5J7L_153
HL_13529.1
HL_6OGI_0201/1/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
HL_81538.2
HL_6OGI_0211/1/744:753No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_6OGI_1071/1/779:785No text annotation
HL_6OGI_0231/1/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_6OGI_1301/1/884:892No text annotation
homologous
HL_5J7L_158
NA
HL_6OGI_0251/1/955:962GNRA
homologous
HL_4WF9_027
HL_37824.7
HL_6OGI_0261/1/978:985No text annotation
homologous
HL_5J7L_160
HL_42998.2
HL_6OGI_0271/1/1064:1074No text annotation
HL_6OGI_0281/1/1092:1099No text annotation
homologous
HL_7RQB_030
NA
HL_6OGI_0291/1/1171:1178No text annotation
HL_6OGI_0301/1/1222:1227GNRA
homologous
HL_5J7L_164
HL_37824.7
HL_6OGI_0311/1/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.8
HL_6OGI_0321/1/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_6OGI_0331/1/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_6OGI_0341/1/1389:1398No text annotation
homologous
HL_5J7L_168
HL_81545.2
HL_6OGI_0351/1/1451:1459No text annotation
HL_6OGI_0361/1/1492:1498No text annotation
homologous
HL_7RQB_038
NA
HL_6OGI_0371/1/1533:1538UNCG
homologous
HL_5J7L_171
HL_34617.5
HL_6OGI_0381/1/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_48778.2
HL_6OGI_0391/1/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_6OGI_0401/1/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.7
HL_6OGI_0411/1/1691:1696UNCG
geometric
HL_5J7L_011
HL_34617.5
HL_6OGI_0421/1/1727:1733No text annotation
homologous
HL_7A0S_043
NA
HL_6OGI_0431/1/1752:1756No text annotation
homologous
HL_5J7L_177
HL_80709.3
HL_6OGI_0441/1/1777:1787No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_6OGI_0451/1/1806:1811GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_6OGI_0461/1/1868:1873GNRA variation
homologous
HL_5J7L_180
HL_37824.7
HL_6OGI_0471/1/1910:1920No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_6OGI_0481/1/1949:1957No text annotation
homologous
HL_4WF9_046
HL_20167.2
HL_6OGI_1311/1/2027:2036No text annotation
homologous
HL_5J7L_183
HL_61996.2
HL_6OGI_1091/1/2102:2187No text annotation
HL_6OGI_0501/1/2121:2177No text annotation
HL_6OGI_0511/1/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_6OGI_0521/1/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_6OGI_0531/1/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_6OGI_0541/1/2324:2331Pseudoknot geometry
homologous
HL_4WF9_052
HL_93324.4
HL_6OGI_1321/1/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.7
HL_6OGI_0561/1/2374:2379GNRA
homologous
HL_4WF9_054
HL_37824.7
HL_6OGI_0571/1/2404:2413No text annotation
homologous
HL_5J7L_192
HL_53454.2
HL_6OGI_0581/1/2471:2479No text annotation
homologous
HL_4WF9_056
HL_32735.2
HL_6OGI_1111/1/2528:2535No text annotation
homologous
HL_9DFE_059
HL_31585.4
HL_6OGI_0601/1/2551:2557No text annotation
homologous
HL_5J7L_195
HL_30068.2
HL_6OGI_0611/1/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_6OGI_1131/1/2652:2668No text annotation
HL_6OGI_0621/1/2658:2663GNRA related
geometric
HL_5J7L_179
HL_04783.2
HL_6OGI_0631/1/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_6OGI_0641/1/2745:2759No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_6OGI_1141/1/2795:2801Other HL
homologous
HL_5J7L_200
HL_08100.1
HL_6OGI_0661/1/2819:2827No text annotation
homologous
HL_5J7L_201
HL_64690.6
HL_6OGI_0671/1/2856:2861GNRA
homologous
HL_5J7L_202
HL_37824.7
HL_6OGI_1151/2/34:48No text annotation
homologous
HL_5J7L_215
HL_97756.2
HL_6OGI_0681/2/38:44No text annotation
homologous
HL_5J7L_203
HL_47787.2
HL_6OGI_0691/2/86:90Mini UNCG
homologous
HL_5J7L_204
HL_48778.2
HL_6OGI_1331/3/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_6OGI_1171/3/63:104No text annotation
HL_6OGI_1181/3/66:103No text annotation
HL_6OGI_0711/3/69:99No text annotation
HL_6OGI_0721/3/155:166No text annotation
HL_6OGI_0731/3/186:191GNRA
homologous
HL_5J7L_004
HL_37824.7
HL_6OGI_1341/3/200:217No text annotation
HL_6OGI_0751/3/258:268tRNA D-loop
geometric
HL_5WWT_001
HL_45175.1
HL_6OGI_1191/3/296:301GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_6OGI_0771/3/320:333No text annotation
homologous
HL_5J7L_008
HL_81205.3
HL_6OGI_0781/3/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_6OGI_1211/3/375:389No text annotation
geometric
HL_5TBW_226
NA
HL_6OGI_0791/3/379:384GNRA
homologous
HL_4LFB_010
HL_37824.7
HL_6OGI_0801/3/419:424No text annotation
homologous
HL_6CZR_082
NA
HL_6OGI_0811/3/462:470GNRA related
homologous
HL_5J7L_012
HL_81538.2
HL_6OGI_1231/3/507:524No text annotation
HL_6OGI_0821/3/522:527No text annotation
geometric
HL_4V88_198
NA
HL_6OGI_0831/3/617:623No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_6OGI_1351/3/680:710No text annotation
HL_6OGI_0841/3/682:708No text annotation
HL_6OGI_0851/3/726:731GNRA
homologous
HL_5J7L_016
HL_37824.7
HL_6OGI_1361/3/779:803No text annotation
HL_6OGI_0861/3/783:799No text annotation
HL_6OGI_0871/3/840:846No text annotation
HL_6OGI_0881/3/862:867GNRA
homologous
HL_5J7L_019
HL_37824.7
HL_6OGI_0891/3/897:902GNRA
homologous
HL_6CZR_091
NA
HL_6OGI_0901/3/963:972No text annotation
homologous
HL_5J7L_021
HL_50779.4
HL_6OGI_0911/3/1012:1017GNRA
geometric
HL_5FQ5_003
HL_37824.7
HL_6OGI_0921/3/1028:1033No text annotation
geometric
HL_4V88_198
NA
HL_6OGI_0931/3/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.7
HL_6OGI_0941/3/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_6OGI_1371/3/1133:1141No text annotation
HL_6OGI_0961/3/1162:1174No text annotation
HL_6OGI_0971/3/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.7
HL_6OGI_1281/3/1310:1327No text annotation
HL_6OGI_0981/3/1313:1324No text annotation
HL_6OGI_1381/3/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_6OGI_1291/3/1443:1459No text annotation
HL_6OGI_1001/3/1449:1454No text annotation
geometric
HL_7RQB_011
NA
HL_6OGI_1011/3/1515:1520GNRA
homologous
HL_6CZR_103
NA
HL_6OGI_1021/5/13:22No text annotation
homologous
HL_4LCK_001
NA
HL_6OGI_1031/5/31:39tRNA anticodon loop
homologous
HL_4TUE_034
HL_06059.6
HL_6OGI_1041/5/53:61T-loop with 2 stacked bulged bases
homologous
HL_1U0B_003
HL_28252.8

Problematic loops

#loop idProblemSequence
HL_6OGI_015No text annotation
HL_6OGI_019tRNA anticodon loop
HL_6OGI_022No text annotation
HL_6OGI_024No text annotation
HL_6OGI_108No text annotation
HL_6OGI_049No text annotation
HL_6OGI_110No text annotation
HL_6OGI_055GNRA with extra cWW
HL_6OGI_059tRNA anticodon loop
HL_6OGI_112No text annotation
HL_6OGI_065No text annotation
HL_6OGI_116No text annotation
HL_6OGI_070No text annotation
HL_6OGI_074No text annotation
HL_6OGI_076GNRA with extra cWW
HL_6OGI_120No text annotation
HL_6OGI_122No text annotation
HL_6OGI_124tRNA anticodon loop
HL_6OGI_125No text annotation
HL_6OGI_126GNRA with near cWW
HL_6OGI_127No text annotation
HL_6OGI_095No text annotation
HL_6OGI_099No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6OGI_0011/1/24:30,
1/1/510:516
Triple sheared with non-canonical cWW
homologous
IL_4WF9_001
IL_04021.2
IL_6OGI_0021/1/36:37,
1/1/442:444
Single bulged A
homologous
IL_7A0S_002
IL_31462.6
IL_6OGI_0031/1/43:44,
1/1/434:436
Minor groove platform
homologous
IL_5J7L_247
IL_51454.3
IL_6OGI_0041/1/81:85,
1/1/97:105
No text annotation
homologous
IL_5J7L_248
IL_37015.1
IL_6OGI_0051/1/183:184,
1/1/212:214
Single stack bend
homologous
IL_5J7L_249
IL_90729.1
IL_6OGI_0061/1/188:194,
1/1/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_006
NA
IL_6OGI_0071/1/239:245,
1/1/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_6OGI_0081/1/269:271,
1/1/366:370
No text annotation
homologous
IL_5J7L_252
IL_47972.1
IL_6OGI_0091/1/274:281,
1/1/359:363
No text annotation
homologous
IL_5J7L_253
IL_77870.1
IL_6OGI_0101/1/293:295,
1/1/343:347
No text annotation
homologous
IL_5J7L_254
IL_69440.3
IL_6OGI_0111/1/481:484,
1/1/496:509
No text annotation
homologous
IL_5J7L_255
IL_81516.2
IL_6OGI_0121/1/536:539,
1/1/554:557
Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_6OGI_0131/1/564:566,
1/1/575:577
Isolated non-canonical cWW pair
homologous
IL_4WF9_017
IL_07785.1
IL_6OGI_0141/1/606:610,
1/1/618:622
AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_6OGI_0151/1/672:674,
1/1/806:808
No text annotation
homologous
IL_7RQB_017
NA
IL_6OGI_0161/1/674:678,
1/1/799:806
tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_6OGI_0171/1/697:698,
1/1/763:765
Single bulged A
homologous
IL_5J7L_261
IL_31462.6
IL_6OGI_0181/1/702:703,
1/1/728:730
Single bulged G
geometric
IL_4V9F_026
IL_00225.13
IL_6OGI_0191/1/703:707,
1/1/724:728
Triple sheared
homologous
IL_5J7L_263
IL_50730.2
IL_6OGI_0201/1/738:740,
1/1/757:758
Major groove platform
homologous
IL_4WF9_026
IL_48076.6
IL_6OGI_0211/1/775:777,
1/1/787:791
Multiple bulged bases
homologous
IL_5J7L_265
IL_06549.2
IL_6OGI_0221/1/837:838,
1/1/940:942
Single stack bend
homologous
IL_5J7L_266
IL_90729.1
IL_6OGI_0231/1/844:847,
1/1/933:934
Other IL
geometric
IL_5J7L_267
IL_90729.1
IL_6OGI_1661/1/844:848,
1/1/930:934
No text annotation
homologous
IL_5J7L_399
IL_96236.1
IL_6OGI_0241/1/847:848,
1/1/930:933
Stack outside cWW
homologous
IL_5J7L_268
IL_56987.1
IL_6OGI_0251/1/850:851,
1/1/926:928
Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_6OGI_0261/1/856:862,
1/1/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
IL_29198.2
IL_6OGI_0271/1/862:863,
1/1/913:915
Single bulged G
geometric
IL_5J7L_271
IL_00225.13
IL_6OGI_0281/1/864:869,
1/1/908:912
No text annotation
IL_6OGI_2011/1/870:872,
1/1/905:907
Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_6OGI_0301/1/875:879,
1/1/898:902
Triple sheared
homologous
IL_5J7L_274
IL_17948.2
IL_6OGI_2021/1/880:881,
1/1/895:897
No text annotation
IL_6OGI_0321/1/994:996,
1/1/1159:1160
Single bulged C
homologous
IL_7RQB_035
NA
IL_6OGI_0331/1/998:1002,
1/1/1153:1157
UAA/GAN
homologous
IL_7A0S_033
IL_38507.2
IL_6OGI_0341/1/1004:1011,
1/1/1150:1151
SSU/LSU pseudoknot
geometric
IL_5J7L_278
IL_41203.4
IL_6OGI_0351/1/1011:1013,
1/1/1149:1150
Single bulged U
homologous
IL_5J7L_279
IL_89505.4
IL_6OGI_0361/1/1018:1024,
1/1/1140:1144
Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_6OGI_0371/1/1024:1030,
1/1/1124:1140
No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_6OGI_0381/1/1031:1034,
1/1/1121:1123
Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_6OGI_0391/1/1038:1041,
1/1/1114:1117
Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_6OGI_2031/1/1043:1051,
1/1/1108:1112
No text annotation
IL_6OGI_0411/1/1059:1062,
1/1/1076:1079
No text annotation
IL_6OGI_0421/1/1087:1091,
1/1/1100:1102
No text annotation
IL_6OGI_0431/1/1196:1198,
1/1/1247:1250
Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.3
IL_6OGI_0441/1/1202:1206,
1/1/1240:1243
No text annotation
homologous
IL_5J7L_287
IL_91920.1
IL_6OGI_0451/1/1208:1215,
1/1/1234:1238
Kink-turn
homologous
IL_7RQB_047
NA
IL_6OGI_0461/1/1262:1269,
1/1/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_6OGI_0471/1/1310:1313,
1/1/1603:1604
Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_6OGI_0481/1/1319:1323,
1/1/1331:1333
C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_6OGI_0491/1/1351:1355,
1/1/1376:1380
UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_6OGI_0501/1/1357:1361,
1/1/1370:1374
tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_6OGI_1691/1/1415:1416,
1/1/1582:1587
No text annotation
homologous
IL_5J7L_294
IL_87211.1
IL_6OGI_0521/1/1417:1421,
1/1/1577:1581
UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_6OGI_0531/1/1432:1435,
1/1/1557:1561
Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_6OGI_1701/1/1437:1440,
1/1/1551:1555
tSH-tHW
homologous
IL_7A0S_053
IL_99646.2
IL_6OGI_0551/1/1450:1451,
1/1/1459:1461
Single bulged U
homologous
IL_5J7L_298
IL_89505.4
IL_6OGI_0561/1/1468:1471,
1/1/1520:1524
No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_6OGI_0571/1/1474:1478,
1/1/1513:1517
tSH-tHW-tHS
homologous
IL_5J7L_300
IL_38862.4
IL_6OGI_1721/1/1481:1482,
1/1/1507:1510
180 degree turn
homologous
IL_5J7L_301
IL_00881.1
IL_6OGI_0591/1/1489:1491,
1/1/1499:1500
Single bulged A
homologous
IL_5J7L_302
IL_31462.6
IL_6OGI_2041/1/1526:1529,
1/1/1542:1546
UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_6OGI_0611/1/1651:1656,
1/1/2004:2006
No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_6OGI_0621/1/1663:1665,
1/1/1995:1997
Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_6OGI_0631/1/1666:1669,
1/1/1993:1994
Major groove platform; stack outside cWW
homologous
IL_4WF9_064
IL_50694.7
IL_6OGI_1731/1/1666:1674,
1/1/1990:1994
No text annotation
homologous
IL_4WF9_117
IL_22854.4
IL_6OGI_0641/1/1669:1674,
1/1/1990:1993
Intercalated tWH
geometric
IL_4WF9_065
IL_76758.2
IL_6OGI_0651/1/1686:1691,
1/1/1696:1702
tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_6OGI_0661/1/1712:1718,
1/1/1742:1746
6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_6OGI_1741/1/1720:1724,
1/1/1736:1740
No text annotation
IL_6OGI_0681/1/1770:1771,
1/1/1980:1982
Single bulged A
homologous
IL_5J7L_312
IL_31462.6
IL_6OGI_0691/1/1798:1804,
1/1/1813:1821
Kink-turn related
homologous
IL_7A0S_065
IL_17069.5
IL_6OGI_0701/1/1837:1840,
1/1/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_6OGI_0711/1/1841:1842,
1/1/1898:1901
Major groove intercalation
homologous
IL_4WF9_071
IL_82107.4
IL_6OGI_0721/1/1846:1849,
1/1/1893:1894
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
IL_68140.4
IL_6OGI_1751/1/1851:1860,
1/1/1882:1891
No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_6OGI_2051/1/1864:1867,
1/1/1874:1878
UAA/GAN
homologous
IL_4WF9_075
IL_77691.5
IL_6OGI_0741/1/1933:1934,
1/1/1964:1967
Bulged stacked bases
geometric
IL_5J7L_318
IL_22551.4
IL_6OGI_0751/1/1934:1945,
1/1/1961:1964
No text annotation
homologous
IL_4WF9_077
IL_42218.2
IL_6OGI_0761/1/2050:2052,
1/1/2617:2618
Major groove platform
homologous
IL_5J7L_320
IL_48076.6
IL_6OGI_0771/1/2054:2056,
1/1/2612:2615
No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_6OGI_0781/1/2067:2069,
1/1/2442:2443
Single bulged U
geometric
IL_7RQB_080
NA
IL_6OGI_2061/1/2067:2071,
1/1/2438:2443
No text annotation
IL_6OGI_0791/1/2069:2071,
1/1/2438:2442
Isolated non-canonical cWW pair
geometric
IL_7Y2B_001
NA
IL_6OGI_0801/1/2081:2083,
1/1/2236:2239
Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_6OGI_0811/1/2085:2087,
1/1/2232:2234
Isolated non-canonical cWW pair
homologous
IL_7A0S_078
IL_28037.2
IL_6OGI_0821/1/2095:2101,
1/1/2189:2194
No text annotation
IL_6OGI_1771/1/2096:2102,
1/1/2187:2193
No text annotation
IL_6OGI_0831/1/2101:2102,
1/1/2187:2189
No text annotation
IL_6OGI_0841/1/2202:2204,
1/1/2220:2221
Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_6OGI_0851/1/2295:2323,
1/1/2332:2337
No text annotation
IL_6OGI_0861/1/2350:2353,
1/1/2364:2367
Double sheared
homologous
IL_4WF9_087
IL_09705.15
IL_6OGI_1781/1/2350:2355,
1/1/2362:2367
No text annotation
IL_6OGI_0871/1/2401:2403,
1/1/2414:2415
No text annotation
IL_6OGI_0881/1/2453:2454,
1/1/2498:2500
Single stack bend
homologous
IL_4WF9_089
IL_26793.1
IL_6OGI_0891/1/2454:2455,
1/1/2496:2498
Major groove platform
geometric
IL_4WF9_090
IL_48076.6
IL_6OGI_0901/1/2456:2459,
1/1/2493:2495
Major groove platform with extra pair
geometric
IL_7RQB_093
NA
IL_6OGI_1791/1/2456:2461,
1/1/2489:2495
No text annotation
IL_6OGI_0911/1/2459:2462,
1/1/2488:2493
No text annotation
IL_6OGI_0921/1/2466:2470,
1/1/2480:2484
Triple sheared
homologous
IL_5J7L_338
IL_17948.2
IL_6OGI_0931/1/2507:2512,
1/1/2574:2582
No text annotation
IL_6OGI_0941/1/2512:2513,
1/1/2571:2574
No text annotation
homologous
IL_5J7L_341
IL_42626.2
IL_6OGI_0951/1/2522:2523,
1/1/2540:2543
Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_6OGI_0971/1/2591:2592,
1/1/2601:2603
No text annotation
IL_6OGI_0981/1/2636:2640,
1/1/2774:2782
tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_6OGI_0991/1/2652:2658,
1/1/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7A0S_094
IL_16458.4
IL_6OGI_2071/1/2680:2684,
1/1/2725:2727
C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_6OGI_1801/1/2687:2691,
1/1/2718:2722
No text annotation
homologous
IL_5J7L_348
IL_23774.1
IL_6OGI_1811/1/2695:2696,
1/1/2711:2714
Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_6OGI_1031/1/2737:2742,
1/1/2762:2767
UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_49767.8
IL_6OGI_1041/1/2806:2811,
1/1/2889:2892
No text annotation
geometric
IL_5J7L_351
IL_29471.1
IL_6OGI_1051/1/2838:2839,
1/1/2878:2880
Single bulged C
homologous
IL_7RQB_108
NA
IL_6OGI_1061/1/2843:2846,
1/1/2870:2874
Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_6OGI_1071/1/2847:2852,
1/1/2865:2869
tHS double platform
homologous
IL_7RQB_110
NA
IL_6OGI_1081/2/17:18,
1/2/65:67
Major groove intercalation
homologous
IL_5J7L_355
IL_31462.6
IL_6OGI_1091/2/23:28,
1/2/56:60
No text annotation
homologous
IL_5J7L_356
IL_18472.4
IL_6OGI_1101/2/30:31,
1/2/51:54
Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_68140.4
IL_6OGI_1111/2/34:38,
1/2/44:48
Symmetric double minor groove platform
geometric
IL_5J7L_358
IL_58103.11
IL_6OGI_1121/2/71:79,
1/2/97:105
Bacterial 5S Loop E
homologous
IL_5J7L_359
IL_56455.6
IL_6OGI_1131/3/30:32,
1/3/552:553
Single bulged G
homologous
IL_6CZR_113
NA
IL_6OGI_1141/3/44:45,
1/3/396:398
Single bulged A
geometric
IL_4LFB_002
IL_31462.6
IL_6OGI_1151/3/47:52,
1/3/359:361
No text annotation
geometric
IL_4LFB_003
IL_14177.2
IL_6OGI_2081/3/54:56,
1/3/356:357
Minor groove platform
homologous
IL_5J7L_004
IL_51454.3
IL_6OGI_1161/3/63:66,
1/3/103:104
Multiple bulged bases
homologous
IL_4LFB_005
IL_82107.4
IL_6OGI_1171/3/66:69,
1/3/99:103
No text annotation
geometric
IL_1U6B_004
IL_64231.5
IL_6OGI_1181/3/128:131,
1/3/231:233
Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_6OGI_1191/3/132:136,
1/3/227:230
Minor groove platform related
homologous
IL_5J7L_010
IL_64231.5
IL_6OGI_1851/3/132:137,
1/3/226:230
No text annotation
IL_6OGI_2091/3/144:146,
1/3/176:178
Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.6
IL_6OGI_1211/3/147:153,
1/3/168:175
tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_6OGI_1221/3/242:249,
1/3/275:284
No text annotation
IL_6OGI_1231/3/249:252,
1/3/274:275
No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_6OGI_2101/3/292:293,
1/3/304:308
C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_6OGI_1251/3/367:369,
1/3/392:393
Single bulged U
homologous
IL_5J7L_017
IL_89505.4
IL_6OGI_1881/3/371:375,
1/3/389:390
C-loop
homologous
IL_5J7L_018
IL_03109.3
IL_6OGI_1271/3/375:376,
1/3/387:389
Single bulged G
homologous
IL_5J7L_019
IL_00225.13
IL_6OGI_1281/3/409:416,
1/3/427:433
No text annotation
homologous
IL_5J7L_020
IL_28026.3
IL_6OGI_1291/3/440:442,
1/3/492:497
No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_6OGI_1301/3/446:450,
1/3/483:488
tSH-tHW-tWW
homologous
IL_5J7L_022
IL_88269.4
IL_6OGI_1311/3/450:455,
1/3/477:483
No text annotation
geometric
IL_5J7L_023
IL_70801.1
IL_6OGI_1321/3/504:511,
1/3/540:541
SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_6OGI_1901/3/504:505,
1/3/526:541
No text annotation
IL_6OGI_1331/3/515:521,
1/3/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_6OGI_1341/3/569:575,
1/3/880:881
No text annotation
homologous
IL_6CZR_134
NA
IL_6OGI_1351/3/580:584,
1/3/757:761
tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_6OGI_1361/3/594:598,
1/3/640:645
No text annotation
IL_6OGI_2111/3/605:612,
1/3/628:633
No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_6OGI_1381/3/654:655,
1/3/751:754
Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_50694.7
IL_6OGI_1391/3/659:660,
1/3/745:747
Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_6OGI_2121/3/662:666,
1/3/740:743
Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_6OGI_2131/3/774:778,
1/3/804:805
Left turn
homologous
IL_5J7L_036
IL_29346.2
IL_6OGI_1421/3/778:783,
1/3/799:804
No text annotation
geometric
IL_8ZA4_001
IL_76308.6
IL_6OGI_2141/3/826:829,
1/3/857:874
No text annotation
IL_6OGI_1441/3/887:894,
1/3/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_6OGI_1451/3/922:923,
1/3/1393:1395
Single bulged A
homologous
IL_4LFB_035
IL_31462.6
IL_6OGI_1461/3/925:928,
1/3/1389:1391
Isolated non-canonical cWW pair
geometric
IL_5Y7M_007
IL_87907.2
IL_6OGI_1471/3/952:954,
1/3/1226:1229
Decoding loop related
geometric
IL_2O3X_003
IL_31737.3
IL_6OGI_2151/3/954:984,
1/3/1221:1226
No text annotation
IL_6OGI_2161/3/993:1000,
1/3/1040:1045
No text annotation
IL_6OGI_1961/3/1002:1010,
1/3/1020:1038
No text annotation
IL_6OGI_2171/3/1010:1011,
1/3/1018:1020
No text annotation
IL_6OGI_1501/3/1051:1056,
1/3/1204:1207
No text annotation
homologous
IL_5J7L_362
IL_49612.1
IL_6OGI_1511/3/1056:1060,
1/3/1197:1204
No text annotation
IL_6OGI_1521/3/1060:1063,
1/3/1193:1197
Tandem non-canonical cWW pairs
geometric
IL_1L9A_005
IL_85033.2
IL_6OGI_1531/3/1124:1132,
1/3/1142:1149
No text annotation
IL_6OGI_2181/3/1158:1161,
1/3/1175:1181
No text annotation
homologous
IL_4LFB_050
IL_42032.1
IL_6OGI_1551/3/1247:1253,
1/3/1284:1290
No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_6OGI_1561/3/1255:1258,
1/3/1277:1282
No text annotation
IL_6OGI_1571/3/1259:1263,
1/3/1272:1276
Triple sheared
homologous
IL_5J7L_056
IL_17948.2
IL_6OGI_1581/3/1399:1401,
1/3/1501:1504
No text annotation
homologous
IL_6CZR_165
NA
IL_6OGI_1981/3/1399:1404,
1/3/1497:1504
No text annotation
IL_6OGI_2191/3/1404:1409,
1/3/1491:1497
No text annotation
IL_6OGI_1601/3/1412:1414,
1/3/1486:1488
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_6OGI_1611/3/1416:1419,
1/3/1481:1484
Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_6OGI_1621/3/1430:1435,
1/3/1466:1470
Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_6OGI_1631/3/1438:1442,
1/3/1460:1463
No text annotation
IL_6OGI_1641/3/1443:1448,
1/3/1455:1459
No text annotation

Problematic loops

#loop idProblemSequence
IL_6OGI_165No text annotation
IL_6OGI_029Tandem non-canonical cWW pairs
IL_6OGI_031Isolated non-canonical cWW pair
IL_6OGI_167No text annotation
IL_6OGI_040No text annotation
IL_6OGI_168No text annotation
IL_6OGI_051No text annotation
IL_6OGI_054No text annotation
IL_6OGI_171No text annotation
IL_6OGI_058No text annotation
IL_6OGI_060Triple sheared related
IL_6OGI_067No text annotation
IL_6OGI_073No text annotation
IL_6OGI_176No text annotation
IL_6OGI_096Tandem non-canonical cWW pairs
IL_6OGI_100C-loop with extra cWW pair
IL_6OGI_101No text annotation
IL_6OGI_102Intercalated cWW
IL_6OGI_182No text annotation
IL_6OGI_183No text annotation
IL_6OGI_184No text annotation
IL_6OGI_120Tandem non-canonical cWW pairs
IL_6OGI_186No text annotation
IL_6OGI_124No text annotation
IL_6OGI_187Isolated non-canonical cWW pair
IL_6OGI_126No text annotation
IL_6OGI_189No text annotation
IL_6OGI_137tSH-tHW-tHH-tHS
IL_6OGI_140No text annotation
IL_6OGI_191No text annotation
IL_6OGI_141No text annotation
IL_6OGI_192No text annotation
IL_6OGI_143Tandem non-canonical cWW pairs
IL_6OGI_193Partly complementary
IL_6OGI_194Tandem non-canonical cWW pairs
IL_6OGI_195No text annotation
IL_6OGI_148No text annotation
IL_6OGI_149No text annotation
IL_6OGI_154No text annotation
IL_6OGI_197No text annotation
IL_6OGI_159No text annotation
IL_6OGI_199No text annotation
IL_6OGI_200Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6OGI_0011/1/30:31,
1/1/474:481,
1/1/509:510
No text annotation
homologous
J3_5J7L_036
J3_60031.2
J3_6OGI_0191/1/30:31,
1/1/474:484,
1/1/496:510
No text annotation
homologous
J3_5J7L_066
J3_92134.2
J3_6OGI_0201/1/32:35,
1/1/445:461,
1/1/468:473
No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_6OGI_0021/1/56:57,
1/1/70:76,
1/1/110:114
No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_6OGI_0211/1/297:301,
1/1/316:325,
1/1/337:341
No text annotation
homologous
J3_5J7L_068
J3_46299.2
J3_6OGI_0031/1/683:689,
1/1/773:775,
1/1/791:794
No text annotation
homologous
J3_7RQB_004
NA
J3_6OGI_0041/1/698:700,
1/1/732:736,
1/1/760:763
No text annotation
homologous
J3_7RQB_005
NA
J3_6OGI_0221/1/1055:1057,
1/1/1081:1087,
1/1/1102:1104
No text annotation
homologous
J3_5J7L_040
J3_28621.5
J3_6OGI_0061/1/1298:1303,
1/1/1625:1627,
1/1/1639:1642
No text annotation
homologous
J3_4WF9_004
J3_32852.6
J3_6OGI_0071/1/1306:1309,
1/1/1605:1611,
1/1/1620:1622
No text annotation
homologous
J3_7A0S_007
J3_71677.1
J3_6OGI_0081/1/1344:1349,
1/1/1382:1385,
1/1/1402:1403
No text annotation
homologous
J3_5J7L_043
J3_92705.1
J3_6OGI_0231/1/1424:1429,
1/1/1564:1565,
1/1/1568:1574
No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_6OGI_0091/1/2091:2093,
1/1/2196:2200,
1/1/2223:2228
Kink-turn in J3
homologous
J3_5J7L_044
J3_89368.5
J3_6OGI_0241/1/2282:2284,
1/1/2384:2395,
1/1/2421:2427
No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_6OGI_0101/1/2517:2520,
1/1/2545:2547,
1/1/2561:2567
No text annotation
homologous
J3_5J7L_046
J3_32601.5
J3_6OGI_0111/1/2789:2793,
1/1/2803:2806,
1/1/2892:2894
No text annotation
J3_6OGI_0351/1/2812:2815,
1/1/2831:2836,
1/1/2882:2888
No text annotation
homologous
J3_5J7L_048
J3_64069.1
J3_6OGI_0131/2/10:16,
1/2/68:70,
1/2/106:110
No text annotation
homologous
J3_5J7L_049
J3_89095.1
J3_6OGI_0361/3/46:47,
1/3/361:367,
1/3/393:395
No text annotation
geometric
J3_4LFB_010
J3_67856.4
J3_6OGI_0371/3/46:52,
1/3/359:367,
1/3/393:395
No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_6OGI_0151/3/586:588,
1/3/651:654,
1/3/754:755
No text annotation
geometric
J3_4LFB_011
J3_56052.5
J3_6OGI_0381/3/586:588,
1/3/651:655,
1/3/751:755
No text annotation
homologous
J3_5J7L_051
J3_17385.4
J3_6OGI_0391/3/672:678,
1/3/712:725,
1/3/732:734
No text annotation
J3_6OGI_0161/3/826:829,
1/3/857:861,
1/3/868:874
No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_6OGI_0291/3/930:939,
1/3/1344:1350,
1/3/1372:1387
No text annotation
J3_6OGI_0171/3/954:962,
1/3/973:985,
1/3/1220:1226
No text annotation
homologous
J3_6CZR_020
NA
J3_6OGI_0301/3/985:993,
1/3/1045:1060,
1/3/1197:1220
No text annotation
J3_6OGI_0401/3/985:1000,
1/3/1040:1060,
1/3/1197:1220
No text annotation
J3_6OGI_0411/3/1063:1068,
1/3/1107:1114,
1/3/1186:1193
No text annotation
J3_6OGI_0421/3/1073:1074,
1/3/1083:1088,
1/3/1097:1102
No text annotation
J3_6OGI_0331/3/1116:1124,
1/3/1149:1158,
1/3/1181:1184
No text annotation
J3_6OGI_0431/3/1116:1124,
1/3/1149:1161,
1/3/1175:1184
No text annotation
J4_6OGI_0011/1/268:269,
1/1/370:375,
1/1/399:406,
1/1/421:424
No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_6OGI_0021/1/601:604,
1/1/624:628,
1/1/635:638,
1/1/650:656
No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_6OGI_0031/1/1270:1276,
1/1/1294:1295,
1/1/1645:1648,
1/1/2009:2010
No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_6OGI_0041/1/1310:1314,
1/1/1338:1343,
1/1/1404:1405,
1/1/1597:1604
No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_6OGI_0051/1/1313:1314,
1/1/1338:1343,
1/1/1404:1405,
1/1/1597:1603
No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_6OGI_0061/1/1444:1445,
1/1/1466:1467,
1/1/1525:1526,
1/1/1546:1547
No text annotation
homologous
J4_5J7L_024
J4_24280.2
J4_6OGI_0071/1/1772:1776,
1/1/1788:1792,
1/1/1827:1830,
1/1/1975:1979
No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_6OGI_0081/1/1833:1835,
1/1/1905:1906,
1/1/1924:1933,
1/1/1967:1972
No text annotation
homologous
J4_5J7L_026
J4_93343.1
J4_6OGI_0161/1/2285:2289,
1/1/2343:2347,
1/1/2370:2372,
1/1/2381:2383
No text annotation
homologous
J4_9DFE_009
J4_04930.6
J4_6OGI_0171/1/2642:2646,
1/1/2674:2676,
1/1/2731:2735,
1/1/2769:2772
No text annotation
J4_6OGI_0181/3/115:122,
1/3/239:240,
1/3/286:289,
1/3/311:312
No text annotation
homologous
J4_5J7L_001
J4_35578.3
J4_6OGI_0191/3/142:144,
1/3/178:184,
1/3/193:198,
1/3/219:221
No text annotation
homologous
J4_5J7L_002
J4_01665.1
J4_6OGI_0201/3/569:577,
1/3/764:769,
1/3/810:821,
1/3/879:881
No text annotation
J4_6OGI_0211/3/942:946,
1/3/1235:1241,
1/3/1296:1308,
1/3/1329:1341
No text annotation
J4_6OGI_0151/5/7:10,
1/5/25:28,
1/5/42:49,
1/5/65:66
tRNA junction
homologous
J4_4V90_004
J4_94519.1
J5_6OGI_0011/1/47:54,
1/1/116:121,
1/1/130:131,
1/1/148:150,
1/1/176:178
No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_6OGI_0021/1/531:533,
1/1/560:564,
1/1/577:579,
1/1/1261:1262,
1/1/2017:2018
No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_6OGI_0031/1/584:589,
1/1/668:671,
1/1/809:812,
1/1/1195:1196,
1/1/1250:1256
No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_6OGI_0041/1/1674:1682,
1/1/1706:1707,
1/1/1751:1752,
1/1/1756:1764,
1/1/1988:1990
No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_6OGI_0051/1/2057:2064,
1/1/2446:2453,
1/1/2500:2507,
1/1/2582:2592,
1/1/2601:2611
No text annotation
J5_6OGI_0101/1/2074:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2282,
1/1/2427:2435
No text annotation
homologous
J5_4WF9_007
J5_39529.1
J5_6OGI_0071/3/36:39,
1/3/403:406,
1/3/436:440,
1/3/497:500,
1/3/545:548
No text annotation
homologous
J5_5J7L_001
J5_92941.1
J5_6OGI_0081/3/36:39,
1/3/403:406,
1/3/436:442,
1/3/492:500,
1/3/545:548
No text annotation
homologous
J5_5J7L_002
J5_67416.1
J5_6OGI_0111/3/57:61,
1/3/106:113,
1/3/314:316,
1/3/337:339,
1/3/350:355
No text annotation
J6_6OGI_0011/1/45:46,
1/1/179:183,
1/1/214:224,
1/1/231:235,
1/1/262:266,
1/1/426:433
No text annotation
J6_6OGI_0021/1/2073:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2284,
1/1/2384:2395,
1/1/2421:2436
No text annotation
J6_6OGI_0031/1/2074:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2284,
1/1/2384:2395,
1/1/2421:2435
No text annotation
J7_6OGI_0011/1/817:822,
1/1/835:837,
1/1/942:946,
1/1/971:976,
1/1/987:991,
1/1/1163:1164,
1/1/1185:1190
No text annotation
J8_6OGI_0021/1/8:15,
1/1/525:531,
1/1/2018:2023,
1/1/2040:2043,
1/1/2625:2630,
1/1/2788:2791,
1/1/2805:2806,
1/1/2892:2895
No text annotation

Problematic loops

#loop idProblemSequence
J3_6OGI_005No text annotation
J3_6OGI_012No text annotation
J3_6OGI_014No text annotation
J3_6OGI_025No text annotation
J3_6OGI_026No text annotation
J3_6OGI_027No text annotation
J3_6OGI_028No text annotation
J3_6OGI_031No text annotation
J3_6OGI_032No text annotation
J3_6OGI_018No text annotation
J3_6OGI_034No text annotation
J4_6OGI_009No text annotation
J4_6OGI_010No text annotation
J4_6OGI_011No text annotation
J4_6OGI_012No text annotation
J4_6OGI_013No text annotation
J4_6OGI_014No text annotation
J5_6OGI_006No text annotation
J5_6OGI_009No text annotation
J8_6OGI_001No text annotation

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