Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5KPV_0011/26/12:22No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_5KPV_0021/26/81:88No text annotation
Not in a motif group
HL_5KPV_0031/26/158:163No text annotation
Not in a motif group
HL_5KPV_0041/26/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_5KPV_0051/26/206:213No text annotation
Not in a motif group
HL_5KPV_0061/26/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_5KPV_0071/26/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_5KPV_0081/26/320:333No text annotation
Not in a motif group
homologous
HL_6CZR_079
HL_81205.2
HL_5KPV_0091/26/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_5KPV_0101/26/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_5KPV_0111/26/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_5KPV_0121/26/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_5KPV_0131/26/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_5KPV_0141/26/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_5KPV_0151/26/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_5KPV_0161/26/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_5KPV_0171/26/786:796No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_5KPV_0181/26/840:846No text annotation
Not in a motif group
HL_5KPV_0191/26/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_5KPV_0201/26/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_5KPV_0211/26/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_5KPV_0221/26/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_5KPV_0231/26/1028:1033No text annotation
Not in a motif group
HL_5KPV_0241/26/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_5KPV_0251/26/1089:1096No text annotation
Not in a motif group
homologous
HL_5J7L_024
HL_71554.2
HL_5KPV_0261/26/1134:1140No text annotation
Not in a motif group
homologous
HL_5J7L_025
HL_03562.2
HL_5KPV_0271/26/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_5KPV_0281/26/1265:1270GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_42097.1
HL_5KPV_0291/26/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_5KPV_0301/26/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_5KPV_0311/26/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_5KPV_0321/26/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_5KPV_0331/27/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_5KPV_0341/27/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_5KPV_0351/27/123:128No text annotation
Not in a motif group
homologous
HL_5J7L_136
HL_75407.1
HL_5KPV_0361/27/137:142No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_5KPV_0371/27/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_5KPV_0381/27/194:201No text annotation
Not in a motif group
homologous
HL_5J7L_139
HL_06192.2
HL_5KPV_0391/27/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_5KPV_0401/27/246:252No text annotation
Not in a motif group
homologous
HL_7A0S_008
HL_67216.7
HL_5KPV_0411/27/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_5KPV_0421/27/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_5KPV_0431/27/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_5KPV_0441/27/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_5KPV_0451/27/462:467GNRA
Not in a motif group
homologous
HL_5J7L_147
HL_42097.1
HL_5KPV_0461/27/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.1
HL_5KPV_0471/27/544:549No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_5KPV_0481/27/566:575T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_150
HL_89380.2
HL_5KPV_0491/27/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_5KPV_0501/27/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_5KPV_0511/27/641:647No text annotation
Not in a motif group
homologous
HL_5J7L_153
HL_77805.2
HL_5KPV_0521/27/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_5KPV_0531/27/744:753No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_5KPV_0541/27/779:785Other HL
Not in a motif group
geometric
HL_1P6V_001
HL_03562.2
HL_5KPV_0551/27/826:831No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_64365.1
HL_5KPV_0561/27/885:891No text annotation
Not in a motif group
geometric
HL_1F1T_001
HL_67216.7
HL_5KPV_0571/27/954:963No text annotation
Not in a motif group
geometric
HL_3RG5_006
HL_49288.1
HL_5KPV_0581/27/978:985No text annotation
Not in a motif group
homologous
HL_7A0S_027
HL_64430.2
HL_5KPV_0591/27/1064:1074No text annotation
Not in a motif group
homologous
HL_5J7L_161
HL_07145.1
HL_5KPV_0601/27/1092:1099No text annotation
Not in a motif group
homologous
HL_6PRV_002
HL_84085.2
HL_5KPV_0611/27/1171:1178No text annotation
Not in a motif group
HL_5KPV_0621/27/1222:1227No text annotation
Not in a motif group
homologous
HL_7A0S_031
HL_87030.2
HL_5KPV_0631/27/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_5KPV_0641/27/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_5KPV_0651/27/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_5KPV_0661/27/1389:1398No text annotation
Not in a motif group
homologous
HL_4WF9_035
HL_69023.2
HL_5KPV_0671/27/1451:1459No text annotation
Not in a motif group
HL_5KPV_0681/27/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_5KPV_0691/27/1533:1538No text annotation
Not in a motif group
HL_5KPV_0701/27/1565:1568No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.2
HL_5KPV_0711/27/1612:1619No text annotation
Not in a motif group
homologous
HL_7A0S_040
HL_64430.2
HL_5KPV_0721/27/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_5KPV_0731/27/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_5KPV_0741/27/1728:1731No text annotation
Not in a motif group
HL_5KPV_0751/27/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_76539.2
HL_5KPV_0761/27/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_5KPV_0771/27/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_5KPV_0781/27/1868:1873Other HL
Not in a motif group
geometric
HL_2CZJ_007
HL_53845.1
HL_5KPV_0791/27/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_5KPV_0801/27/1949:1957No text annotation
Not in a motif group
homologous
HL_4WF9_046
HL_51824.1
HL_5KPV_0811/27/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_5KPV_0821/27/2139:2152No text annotation
Not in a motif group
HL_5KPV_0831/27/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_5KPV_0841/27/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_5KPV_0851/27/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_5KPV_0861/27/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_5KPV_0871/27/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_5KPV_0881/27/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_5KPV_0891/27/2374:2379GNRA
Not in a motif group
homologous
HL_4WF9_054
HL_42097.1
HL_5KPV_0901/27/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_30784.2
HL_5KPV_0911/27/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_5KPV_0921/27/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_5KPV_0931/27/2551:2557No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_5KPV_0941/27/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_5KPV_0951/27/2658:2663GNRA
Not in a motif group
geometric
HL_6CB3_004
HL_42097.1
HL_5KPV_0961/27/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_5KPV_0971/27/2745:2759No text annotation
Not in a motif group
homologous
HL_4WF9_062
HL_56677.7
HL_5KPV_0981/27/2795:2801Other HL
Not in a motif group
homologous
HL_5J7L_200
HL_34168.2
HL_5KPV_0991/27/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_5KPV_1001/27/2856:2861Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_42097.1
HL_5KPV_1011/28/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_5KPV_1021/28/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2
HL_5KPV_1031/30/13:22No text annotation
Not in a motif group
homologous
HL_3KFU_004
NA
HL_5KPV_1041/30/30:40No text annotation
Not in a motif group
homologous
HL_5IB8_208
NA
HL_5KPV_1051/30/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4V8N_145
HL_22280.1
HL_5KPV_1061/31/13:22No text annotation
Not in a motif group
homologous
HL_4YYE_001
NA
HL_5KPV_1071/31/31:39No text annotation
Not in a motif group
homologous
HL_6CFJ_107
NA
HL_5KPV_1081/31/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5AH5_008
HL_22280.1
HL_5KPV_1091/32/13:22No text annotation
Not in a motif group
homologous
HL_1QF6_001
NA
HL_5KPV_1101/32/31:39No text annotation
Not in a motif group
homologous
HL_5UD5_002
HL_49288.1
HL_5KPV_1111/32/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4RDX_003
HL_22280.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5KPV_0011/26/30:32,
1/26/552:553
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_00225.2
IL_5KPV_0021/26/44:45,
1/26/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_5KPV_0031/26/47:52,
1/26/359:361
No text annotation
Not in a motif group
geometric
IL_5J7L_003
IL_11178.1
IL_5KPV_0041/26/54:56,
1/26/356:357
Minor groove platform
Not in a motif group
homologous
IL_6CZR_116
IL_93353.1
IL_5KPV_0051/26/63:66,
1/26/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_5KPV_0061/26/67:69,
1/26/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_5KPV_0071/26/70:73,
1/26/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_5KPV_0081/26/75:76,
1/26/93:95
Stack outside cWW
Not in a motif group
geometric
IL_6JQ6_004
IL_16396.2
IL_5KPV_0091/26/128:131,
1/26/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_5KPV_0101/26/132:136,
1/26/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_5KPV_0111/26/144:146,
1/26/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_5KPV_0121/26/147:153,
1/26/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_5KPV_0131/26/203:206,
1/26/213:214
Minor groove platform
Not in a motif group
geometric
IL_3MXH_005
IL_15052.1
IL_5KPV_0141/26/242:247,
1/26/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_5KPV_0151/26/249:252,
1/26/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_5KPV_0161/26/292:293,
1/26/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_5KPV_0171/26/367:369,
1/26/392:393
Single bulged U
Not in a motif group
geometric
IL_5J7L_017
IL_83039.13
IL_5KPV_0181/26/371:375,
1/26/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_5KPV_0191/26/375:376,
1/26/387:389
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_5KPV_0201/26/409:416,
1/26/427:433
No text annotation
Not in a motif group
homologous
IL_5J7L_020
IL_28026.1
IL_5KPV_0211/26/440:442,
1/26/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_5KPV_0221/26/446:450,
1/26/483:488
tSH-tHW-tWW
Not in a motif group
geometric
IL_5J7L_022
IL_88269.3
IL_5KPV_0231/26/450:455,
1/26/477:483
No text annotation
Not in a motif group
homologous
IL_5J7L_023
IL_70801.1
IL_5KPV_0241/26/504:511,
1/26/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_5KPV_0251/26/515:521,
1/26/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_5KPV_0261/26/569:575,
1/26/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_5KPV_0271/26/580:584,
1/26/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_5KPV_0281/26/594:596,
1/26/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_5KPV_0291/26/597:598,
1/26/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_5KPV_0301/26/605:612,
1/26/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_5KPV_0311/26/654:655,
1/26/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_50694.2
IL_5KPV_0321/26/659:660,
1/26/745:747
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_5KPV_0331/26/662:666,
1/26/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_5KPV_0341/26/673:678,
1/26/712:717
No text annotation
Not in a motif group
homologous
IL_5J7L_034
IL_04668.1
IL_5KPV_0351/26/684:688,
1/26/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_5KPV_0361/26/774:778,
1/26/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_5KPV_0371/26/779:783,
1/26/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_5KPV_0381/26/887:894,
1/26/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_5KPV_0391/26/922:923,
1/26/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.2
IL_5KPV_0401/26/925:927,
1/26/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.2
IL_5KPV_0411/26/933:935,
1/26/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_5KPV_0421/26/953:954,
1/26/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_5KPV_0431/26/993:997,
1/26/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_5J7L_043
IL_47078.1
IL_5KPV_0441/26/998:999,
1/26/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_5KPV_0451/26/1048:1050,
1/26/1208:1209
No text annotation
Not in a motif group
homologous
IL_6CZR_152
NA
IL_5KPV_0461/26/1051:1056,
1/26/1204:1207
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_473
IL_30621.2
IL_5KPV_0471/26/1057:1058,
1/26/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_5KPV_0481/26/1060:1061,
1/26/1195:1197
Single bulged A
Not in a motif group
geometric
IL_5J7L_049
IL_37497.2
IL_5KPV_0491/26/1061:1063,
1/26/1193:1195
No text annotation
Not in a motif group
homologous
IL_4LFB_047
IL_95997.1
IL_5KPV_0501/26/1124:1128,
1/26/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_5KPV_0511/26/1129:1132,
1/26/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_5KPV_0521/26/1158:1161,
1/26/1175:1181
No text annotation
Not in a motif group
homologous
IL_4LFB_050
IL_42032.1
IL_5KPV_0531/26/1247:1253,
1/26/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_5KPV_0541/26/1255:1258,
1/26/1277:1282
No text annotation
Not in a motif group
homologous
IL_5J7L_055
IL_75461.4
IL_5KPV_0551/26/1259:1263,
1/26/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_5KPV_0561/26/1303:1308,
1/26/1329:1334
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_5KPV_0571/26/1399:1401,
1/26/1501:1504
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_5KPV_0581/26/1401:1404,
1/26/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_5KPV_0591/26/1405:1407,
1/26/1494:1496
No text annotation
Not in a motif group
geometric
IL_3GM7_005
IL_95997.1
IL_5KPV_0601/26/1407:1409,
1/26/1491:1494
No text annotation
Not in a motif group
IL_5KPV_0611/26/1412:1414,
1/26/1486:1488
No text annotation
Not in a motif group
homologous
IL_4LFB_059
IL_95997.1
IL_5KPV_0621/26/1416:1419,
1/26/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_5KPV_0631/26/1430:1435,
1/26/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_5KPV_0641/26/1440:1442,
1/26/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_5KPV_0651/26/1445:1448,
1/26/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5
IL_5KPV_0661/27/24:30,
1/27/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_4WF9_001
IL_66414.6
IL_5KPV_0671/27/36:37,
1/27/442:444
Single bulged A
Not in a motif group
homologous
IL_7A0S_002
IL_37497.2
IL_5KPV_0681/27/43:44,
1/27/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_5KPV_0691/27/81:85,
1/27/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_5KPV_0701/27/183:184,
1/27/212:214
Single stack bend
Not in a motif group
homologous
IL_5J7L_249
IL_76488.2
IL_5KPV_0711/27/188:194,
1/27/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_250
IL_04346.7
IL_5KPV_0721/27/239:245,
1/27/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_5KPV_0731/27/269:271,
1/27/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_5KPV_0741/27/274:281,
1/27/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_5KPV_0751/27/293:295,
1/27/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_5KPV_0761/27/481:484,
1/27/496:509
No text annotation
Not in a motif group
homologous
IL_5J7L_255
IL_60992.6
IL_5KPV_0771/27/536:539,
1/27/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_5KPV_0781/27/564:566,
1/27/575:577
No text annotation
Not in a motif group
geometric
IL_5J7L_257
IL_95997.1
IL_5KPV_0791/27/606:610,
1/27/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_5KPV_0801/27/672:674,
1/27/806:808
CC cWW
Not in a motif group
geometric
IL_4KNQ_004
IL_95997.1
IL_5KPV_0811/27/674:678,
1/27/799:806
No text annotation
Not in a motif group
homologous
IL_7RQB_018
IL_17470.6
IL_5KPV_0821/27/697:698,
1/27/763:765
Single bulged A
Not in a motif group
homologous
IL_5J7L_261
IL_37497.2
IL_5KPV_0831/27/702:703,
1/27/728:730
Single bulged G
Not in a motif group
geometric
IL_7A0S_017
IL_00225.2
IL_5KPV_0841/27/703:707,
1/27/724:728
Triple sheared
Not in a motif group
homologous
IL_5J7L_263
IL_56467.8
IL_5KPV_0851/27/738:740,
1/27/757:758
Major groove platform
Not in a motif group
homologous
IL_4WF9_026
IL_27635.1
IL_5KPV_0861/27/775:777,
1/27/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_265
IL_90991.6
IL_5KPV_0871/27/837:838,
1/27/940:942
Single stack bend
Not in a motif group
homologous
IL_5J7L_266
IL_92001.1
IL_5KPV_0881/27/844:847,
1/27/933:934
Other IL
Not in a motif group
geometric
IL_5J7L_267
IL_92001.1
IL_5KPV_0891/27/847:848,
1/27/930:933
Stack outside cWW
Not in a motif group
homologous
IL_5J7L_268
IL_37629.1
IL_5KPV_0901/27/850:851,
1/27/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_5KPV_0911/27/856:862,
1/27/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_5J7L_270
IL_93830.3
IL_5KPV_0921/27/862:863,
1/27/913:915
Single bulged G
Not in a motif group
homologous
IL_5J7L_271
IL_00225.2
IL_5KPV_0931/27/864:868,
1/27/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_5KPV_0941/27/870:872,
1/27/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_5KPV_0951/27/875:879,
1/27/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_5KPV_0961/27/880:882,
1/27/894:897
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_3KTW_002
IL_82068.2
IL_5KPV_0971/27/994:996,
1/27/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_5KPV_0981/27/998:1002,
1/27/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_5J7L_277
IL_89002.2
IL_5KPV_0991/27/1004:1011,
1/27/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5J7L_278
IL_15861.7
IL_5KPV_1001/27/1011:1013,
1/27/1149:1150
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.13
IL_5KPV_1011/27/1018:1024,
1/27/1140:1144
No text annotation
Not in a motif group
homologous
IL_5J7L_280
IL_57188.3
IL_5KPV_1021/27/1024:1030,
1/27/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_5KPV_1031/27/1031:1034,
1/27/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_282
IL_82068.2
IL_5KPV_1041/27/1038:1041,
1/27/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_5KPV_1051/27/1043:1051,
1/27/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_5KPV_1061/27/1059:1062,
1/27/1076:1079
No text annotation
Not in a motif group
homologous
IL_6PRV_001
IL_23544.2
IL_5KPV_1071/27/1087:1090,
1/27/1101:1102
No text annotation
Not in a motif group
homologous
IL_6PRV_002
NA
IL_5KPV_1081/27/1196:1198,
1/27/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_5J7L_286
IL_52767.2
IL_5KPV_1091/27/1202:1206,
1/27/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_5KPV_1101/27/1208:1215,
1/27/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_5KPV_1111/27/1262:1269,
1/27/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_5KPV_1121/27/1310:1313,
1/27/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4WF9_049
IL_50694.2
IL_5KPV_1131/27/1319:1323,
1/27/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_5KPV_1141/27/1351:1355,
1/27/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_5KPV_1151/27/1357:1361,
1/27/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_5KPV_1161/27/1415:1416,
1/27/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_5KPV_1171/27/1417:1421,
1/27/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_5KPV_1181/27/1432:1435,
1/27/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_5KPV_1191/27/1437:1440,
1/27/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_5KPV_1201/27/1450:1451,
1/27/1459:1461
No text annotation
Not in a motif group
IL_5KPV_1211/27/1468:1471,
1/27/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_5KPV_1221/27/1474:1478,
1/27/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_5KPV_1231/27/1481:1482,
1/27/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_5KPV_1241/27/1489:1491,
1/27/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_5KPV_1251/27/1526:1529,
1/27/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_5KPV_1261/27/1651:1656,
1/27/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_5KPV_1271/27/1663:1665,
1/27/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_5KPV_1281/27/1666:1669,
1/27/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7A0S_061
IL_50694.2
IL_5KPV_1291/27/1669:1674,
1/27/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_7A0S_062
IL_82842.2
IL_5KPV_1301/27/1686:1691,
1/27/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_7RQB_068
IL_65969.2
IL_5KPV_1311/27/1712:1718,
1/27/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_5KPV_1321/27/1720:1724,
1/27/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_5KPV_1331/27/1727:1728,
1/27/1731:1733
Single bulged C
Not in a motif group
geometric
IL_5J7L_311
IL_61258.12
IL_5KPV_1341/27/1770:1771,
1/27/1980:1982
Single bulged A
Not in a motif group
homologous
IL_7A0S_064
IL_37497.2
IL_5KPV_1351/27/1798:1804,
1/27/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_5KPV_1361/27/1837:1840,
1/27/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_5KPV_1371/27/1841:1842,
1/27/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_5KPV_1381/27/1846:1849,
1/27/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.6
IL_5KPV_1391/27/1864:1867,
1/27/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_5KPV_1401/27/1933:1934,
1/27/1964:1967
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_318
IL_59677.2
IL_5KPV_1411/27/1934:1945,
1/27/1961:1964
No text annotation
Not in a motif group
geometric
IL_4WF9_077
IL_81589.2
IL_5KPV_1421/27/2050:2052,
1/27/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.1
IL_5KPV_1431/27/2054:2056,
1/27/2612:2615
No text annotation
Not in a motif group
IL_5KPV_1441/27/2067:2069,
1/27/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7A0S_075
IL_83039.13
IL_5KPV_1451/27/2070:2071,
1/27/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_5J7L_324
IL_42622.2
IL_5KPV_1461/27/2081:2083,
1/27/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_5KPV_1471/27/2085:2087,
1/27/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_5KPV_1481/27/2103:2105,
1/27/2184:2186
No text annotation
Not in a motif group
geometric
IL_5VCI_001
IL_95997.1
IL_5KPV_1491/27/2107:2121,
1/27/2177:2182
No text annotation
Not in a motif group
IL_5KPV_1501/27/2124:2128,
1/27/2160:2174
No text annotation
Not in a motif group
IL_5KPV_1511/27/2129:2139,
1/27/2152:2159
No text annotation
Not in a motif group
IL_5KPV_1521/27/2202:2204,
1/27/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_5KPV_1531/27/2350:2353,
1/27/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_5KPV_1541/27/2401:2403,
1/27/2414:2415
No text annotation
Not in a motif group
IL_5KPV_1551/27/2453:2454,
1/27/2498:2500
Single stack bend
Not in a motif group
geometric
IL_4WF9_089
IL_76488.2
IL_5KPV_1561/27/2454:2455,
1/27/2496:2498
Major groove platform
Not in a motif group
homologous
IL_7RQB_092
IL_27635.1
IL_5KPV_1571/27/2456:2459,
1/27/2493:2495
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_63450.2
IL_5KPV_1581/27/2459:2461,
1/27/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_337
IL_92788.2
IL_5KPV_1591/27/2466:2470,
1/27/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_5KPV_1601/27/2507:2509,
1/27/2579:2582
No text annotation
Not in a motif group
geometric
IL_6DME_003
IL_63450.2
IL_5KPV_1611/27/2510:2512,
1/27/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_4WF9_095
IL_90933.2
IL_5KPV_1621/27/2512:2513,
1/27/2571:2574
No text annotation
Not in a motif group
homologous
IL_5J7L_341
IL_71530.2
IL_5KPV_1631/27/2522:2523,
1/27/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_7RQB_099
IL_95601.3
IL_5KPV_1641/27/2591:2592,
1/27/2601:2603
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.2
IL_5KPV_1651/27/2636:2640,
1/27/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_5KPV_1661/27/2652:2658,
1/27/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7RQB_103
IL_16458.1
IL_5KPV_1671/27/2680:2684,
1/27/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_5KPV_1681/27/2687:2691,
1/27/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_5KPV_1691/27/2695:2696,
1/27/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_4WF9_103
IL_71530.2
IL_5KPV_1701/27/2737:2742,
1/27/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_5KPV_1711/27/2806:2811,
1/27/2889:2892
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_49460.2
IL_5KPV_1721/27/2838:2839,
1/27/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_4WF9_106
IL_16396.2
IL_5KPV_1731/27/2843:2846,
1/27/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_5KPV_1741/27/2847:2852,
1/27/2865:2869
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.5
IL_5KPV_1751/28/17:18,
1/28/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.2
IL_5KPV_1761/28/23:28,
1/28/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_5KPV_1771/28/30:31,
1/28/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_357
IL_09061.6
IL_5KPV_1781/28/34:38,
1/28/44:48
Symmetric double minor groove platform
Not in a motif group
geometric
IL_5J7L_358
IL_58103.6
IL_5KPV_1791/28/71:79,
1/28/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5KPV_0011/26/46:47,
1/26/361:367,
1/26/393:395
No text annotation
Not in a motif group
homologous
J3_5J7L_001
NA
J3_5KPV_0021/26/586:588,
1/26/651:654,
1/26/754:755
No text annotation
Not in a motif group
J3_5KPV_0031/26/672:673,
1/26/717:725,
1/26/732:734
No text annotation
Not in a motif group
J3_5KPV_0041/26/826:829,
1/26/857:861,
1/26/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_5KPV_0051/26/936:939,
1/26/1344:1350,
1/26/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_5KPV_0061/26/943:946,
1/26/1235:1237,
1/26/1337:1340
No text annotation
Not in a motif group
homologous
J3_5J7L_005
NA
J3_5KPV_0071/26/955:962,
1/26/973:984,
1/26/1221:1225
No text annotation
Not in a motif group
J3_5KPV_0081/26/990:993,
1/26/1045:1047,
1/26/1210:1215
No text annotation
Not in a motif group
J3_5KPV_0091/26/1003:1006,
1/26/1023:1028,
1/26/1033:1037
No text annotation
Not in a motif group
J3_5KPV_0101/26/1063:1068,
1/26/1107:1113,
1/26/1187:1193
No text annotation
Not in a motif group
J3_5KPV_0111/26/1073:1074,
1/26/1083:1087,
1/26/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_5KPV_0121/26/1116:1118,
1/26/1155:1158,
1/26/1181:1184
No text annotation
Not in a motif group
J3_5KPV_0131/26/1237:1241,
1/26/1296:1303,
1/26/1334:1337
No text annotation
Not in a motif group
J3_5KPV_0141/27/30:31,
1/27/474:481,
1/27/509:510
No text annotation
Not in a motif group
J3_5KPV_0151/27/56:57,
1/27/70:76,
1/27/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_5KPV_0161/27/683:689,
1/27/773:775,
1/27/791:794
No text annotation
Not in a motif group
homologous
J3_5J7L_038
NA
J3_5KPV_0171/27/698:700,
1/27/732:736,
1/27/760:763
No text annotation
Not in a motif group
J3_5KPV_0181/27/1055:1057,
1/27/1081:1087,
1/27/1102:1104
No text annotation
Not in a motif group
J3_5KPV_0191/27/1298:1303,
1/27/1625:1627,
1/27/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_5KPV_0201/27/1306:1309,
1/27/1605:1611,
1/27/1620:1622
No text annotation
Not in a motif group
homologous
J3_7A0S_007
NA
J3_5KPV_0211/27/1344:1349,
1/27/1382:1385,
1/27/1402:1403
No text annotation
Not in a motif group
homologous
J3_5J7L_043
NA
J3_5KPV_0221/27/2091:2093,
1/27/2196:2200,
1/27/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_5KPV_0231/27/2295:2299,
1/27/2317:2323,
1/27/2332:2337
No text annotation
Not in a motif group
J3_5KPV_0241/27/2517:2520,
1/27/2545:2547,
1/27/2561:2567
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_5KPV_0251/27/2789:2791,
1/27/2805:2806,
1/27/2892:2894
No text annotation
Not in a motif group
J3_5KPV_0261/27/2812:2815,
1/27/2831:2836,
1/27/2882:2888
No text annotation
Not in a motif group
homologous
J3_5J7L_048
NA
J3_5KPV_0271/28/10:16,
1/28/68:70,
1/28/106:110
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA

Problematic loops

No problematic loops


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