7SS9 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7SS9_001 | 1/1/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_7SS9_002 | 1/1/86:96 | No text annotation Not in a motif group | ||
| HL_7SS9_003 | 1/1/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
| HL_7SS9_004 | 1/1/136:143 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_86373.2 | |
| HL_7SS9_005 | 1/1/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_7SS9_006 | 1/1/194:201 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_75407.1 | |
| HL_7SS9_007 | 1/1/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_7SS9_008 | 1/1/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_7SS9_009 | 1/1/305:312 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_7SS9_010 | 1/1/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_7SS9_011 | 1/1/381:393 | No text annotation Not in a motif group | ||
| HL_7SS9_012 | 1/1/410:417 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
| HL_7SS9_013 | 1/1/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_7SS9_014 | 1/1/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_7SS9_015 | 1/1/544:549 | No text annotation Not in a motif group | ||
| HL_7SS9_016 | 1/1/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_011 HL_75407.1 | |
| HL_7SS9_017 | 1/1/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_7SS9_018 | 1/1/629:634 | No text annotation Not in a motif group | homologous HL_7A0S_020 HL_42097.1 | |
| HL_7SS9_019 | 1/1/639:649 | No text annotation Not in a motif group | ||
| HL_7SS9_020 | 1/1/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_7SS9_021 | 1/1/744:753 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_7SS9_022 | 1/1/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_7SS9_023 | 1/1/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_64365.1 | |
| HL_7SS9_024 | 1/1/884:892 | No text annotation Not in a motif group | ||
| HL_7SS9_025 | 1/1/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_7SS9_026 | 1/1/978:985 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_64430.2 | |
| HL_7SS9_027 | 1/1/1064:1074 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_7SS9_028 | 1/1/1091:1100 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_24068.2 | |
| HL_7SS9_029 | 1/1/1171:1178 | No text annotation Not in a motif group | ||
| HL_7SS9_030 | 1/1/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_7SS9_031 | 1/1/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_7SS9_032 | 1/1/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_7SS9_033 | 1/1/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_7SS9_034 | 1/1/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_7SS9_035 | 1/1/1451:1459 | No text annotation Not in a motif group | homologous HL_5J7L_169 HL_53837.1 | |
| HL_7SS9_036 | 1/1/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_7SS9_037 | 1/1/1533:1538 | No text annotation Not in a motif group | ||
| HL_7SS9_038 | 1/1/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_7SS9_039 | 1/1/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_7SS9_040 | 1/1/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_7SS9_041 | 1/1/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
| HL_7SS9_042 | 1/1/1727:1733 | No text annotation Not in a motif group | ||
| HL_7SS9_043 | 1/1/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_7SS9_044 | 1/1/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_7SS9_045 | 1/1/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_7SS9_046 | 1/1/1868:1873 | No text annotation Not in a motif group | ||
| HL_7SS9_047 | 1/1/1909:1921 | No text annotation Not in a motif group | ||
| HL_7SS9_048 | 1/1/1949:1957 | No text annotation Not in a motif group | homologous HL_7A0S_048 HL_51824.1 | |
| HL_7SS9_049 | 1/1/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_7SS9_050 | 1/1/2139:2152 | No text annotation Not in a motif group | ||
| HL_7SS9_051 | 1/1/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_7SS9_052 | 1/1/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_7SS9_053 | 1/1/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_7SS9_054 | 1/1/2303:2313 | No text annotation Not in a motif group | homologous HL_5J7L_188 HL_11805.3 | |
| HL_7SS9_055 | 1/1/2324:2331 | No text annotation Not in a motif group | homologous HL_7A0S_055 HL_12078.2 | |
| HL_7SS9_056 | 1/1/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_7SS9_057 | 1/1/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_7SS9_058 | 1/1/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_7SS9_059 | 1/1/2471:2479 | No text annotation Not in a motif group | homologous HL_7A0S_059 HL_06192.2 | |
| HL_7SS9_060 | 1/1/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_7SS9_061 | 1/1/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_7SS9_062 | 1/1/2594:2599 | GNRA Not in a motif group | homologous HL_4WF9_059 HL_42097.1 | |
| HL_7SS9_063 | 1/1/2658:2663 | GNRA Not in a motif group | geometric HL_5TPY_004 HL_42097.1 | |
| HL_7SS9_064 | 1/1/2699:2708 | No text annotation Not in a motif group | ||
| HL_7SS9_065 | 1/1/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_7SS9_066 | 1/1/2795:2801 | No text annotation Not in a motif group | geometric HL_6VMY_004 HL_91058.1 | |
| HL_7SS9_067 | 1/1/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_7SS9_068 | 1/1/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_7SS9_069 | 1/2/34:48 | No text annotation Not in a motif group | ||
| HL_7SS9_070 | 1/2/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_7SS9_071 | 1/3/12:22 | No text annotation Not in a motif group | ||
| HL_7SS9_072 | 1/3/75:95 | No text annotation Not in a motif group | ||
| HL_7SS9_073 | 1/3/156:165 | No text annotation Not in a motif group | ||
| HL_7SS9_074 | 1/3/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_7SS9_075 | 1/3/206:213 | No text annotation Not in a motif group | ||
| HL_7SS9_076 | 1/3/258:268 | No text annotation Not in a motif group | ||
| HL_7SS9_077 | 1/3/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_7SS9_078 | 1/3/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_7SS9_079 | 1/3/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_7SS9_080 | 1/3/377:386 | No text annotation Not in a motif group | ||
| HL_7SS9_081 | 1/3/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_7SS9_082 | 1/3/461:471 | No text annotation Not in a motif group | ||
| HL_7SS9_083 | 1/3/522:527 | GNRA Not in a motif group | geometric HL_6JDV_002 HL_42097.1 | |
| HL_7SS9_084 | 1/3/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_7SS9_085 | 1/3/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_7SS9_086 | 1/3/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_7SS9_087 | 1/3/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_7SS9_088 | 1/3/840:846 | No text annotation Not in a motif group | ||
| HL_7SS9_089 | 1/3/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_7SS9_090 | 1/3/897:902 | GNRA Not in a motif group | homologous HL_6CZR_091 HL_42097.1 | |
| HL_7SS9_091 | 1/3/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_7SS9_092 | 1/3/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_7SS9_093 | 1/3/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_7SS9_094 | 1/3/1089:1096 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_7SS9_095 | 1/3/1134:1140 | No text annotation Not in a motif group | ||
| HL_7SS9_096 | 1/3/1164:1172 | No text annotation Not in a motif group | ||
| HL_7SS9_097 | 1/3/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_7SS9_098 | 1/3/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_7SS9_099 | 1/3/1355:1367 | No text annotation Not in a motif group | ||
| HL_7SS9_100 | 1/3/1449:1454 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_7SS9_101 | 1/3/1515:1520 | Other HL Not in a motif group | geometric HL_4V88_207 HL_87030.2 | |
| HL_7SS9_102 | 1/5/13:22 | No text annotation Not in a motif group | homologous HL_6PMO_003 NA | |
| HL_7SS9_103 | 1/5/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_7SS9_104 | 1/5/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5UD5_003 HL_22280.1 | |
| HL_7SS9_105 | 1/6/13:22 | No text annotation Not in a motif group | homologous HL_3WFS_001 NA | |
| HL_7SS9_106 | 1/6/30:40 | No text annotation Not in a motif group | homologous HL_5IB8_208 NA | |
| HL_7SS9_107 | 1/6/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5WT1_003 HL_71309.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7SS9_001 | 1/1/24:30, 1/1/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5J7L_245 IL_66414.6 | |
| IL_7SS9_002 | 1/1/36:37, 1/1/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_7SS9_003 | 1/1/43:44, 1/1/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_7SS9_004 | 1/1/81:85, 1/1/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_7SS9_005 | 1/1/183:185, 1/1/211:214 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_84698.1 | |
| IL_7SS9_006 | 1/1/188:194, 1/1/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_7SS9_007 | 1/1/239:245, 1/1/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_7SS9_008 | 1/1/269:271, 1/1/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_7SS9_009 | 1/1/274:281, 1/1/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_7SS9_010 | 1/1/289:295, 1/1/343:351 | No text annotation Not in a motif group | ||
| IL_7SS9_011 | 1/1/481:484, 1/1/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
| IL_7SS9_012 | 1/1/536:539, 1/1/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_7SS9_013 | 1/1/564:566, 1/1/575:577 | No text annotation Not in a motif group | homologous IL_7A0S_011 IL_95997.1 | |
| IL_7SS9_014 | 1/1/606:610, 1/1/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_7SS9_015 | 1/1/672:674, 1/1/806:808 | No text annotation Not in a motif group | geometric IL_4LFB_010 IL_95997.1 | |
| IL_7SS9_016 | 1/1/674:678, 1/1/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_5J7L_260 IL_17470.6 | |
| IL_7SS9_017 | 1/1/697:698, 1/1/763:765 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.2 | |
| IL_7SS9_018 | 1/1/702:703, 1/1/728:730 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_7SS9_019 | 1/1/703:707, 1/1/724:728 | Triple sheared Not in a motif group | homologous IL_4WF9_024 IL_56467.8 | |
| IL_7SS9_020 | 1/1/738:740, 1/1/757:758 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.1 | |
| IL_7SS9_021 | 1/1/775:777, 1/1/787:791 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_7SS9_022 | 1/1/844:847, 1/1/933:934 | Other IL Not in a motif group | geometric IL_5J7L_267 IL_92001.1 | |
| IL_7SS9_023 | 1/1/847:848, 1/1/930:933 | Stack outside cWW Not in a motif group | homologous IL_5J7L_268 IL_37629.1 | |
| IL_7SS9_024 | 1/1/850:851, 1/1/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_7SS9_025 | 1/1/856:862, 1/1/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_7SS9_026 | 1/1/862:863, 1/1/913:915 | Single bulged G Not in a motif group | homologous IL_5J7L_271 IL_00225.2 | |
| IL_7SS9_027 | 1/1/864:869, 1/1/908:912 | No text annotation Not in a motif group | ||
| IL_7SS9_028 | 1/1/870:874, 1/1/903:907 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_7SS9_029 | 1/1/875:879, 1/1/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_7SS9_030 | 1/1/880:882, 1/1/894:897 | No text annotation Not in a motif group | ||
| IL_7SS9_031 | 1/1/994:996, 1/1/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_7SS9_032 | 1/1/998:1002, 1/1/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
| IL_7SS9_033 | 1/1/1004:1011, 1/1/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4WF9_037 IL_15861.7 | |
| IL_7SS9_034 | 1/1/1011:1013, 1/1/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_7SS9_035 | 1/1/1017:1024, 1/1/1140:1145 | No text annotation Not in a motif group | ||
| IL_7SS9_036 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_7SS9_037 | 1/1/1031:1034, 1/1/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_041 IL_82068.2 | |
| IL_7SS9_038 | 1/1/1038:1041, 1/1/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_7SS9_039 | 1/1/1043:1051, 1/1/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.4 | |
| IL_7SS9_040 | 1/1/1059:1062, 1/1/1076:1079 | No text annotation Not in a motif group | ||
| IL_7SS9_041 | 1/1/1196:1198, 1/1/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_52767.2 | |
| IL_7SS9_042 | 1/1/1202:1207, 1/1/1239:1243 | No text annotation Not in a motif group | ||
| IL_7SS9_043 | 1/1/1208:1215, 1/1/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_7SS9_044 | 1/1/1310:1313, 1/1/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.2 | |
| IL_7SS9_045 | 1/1/1319:1323, 1/1/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_7SS9_046 | 1/1/1351:1355, 1/1/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_7SS9_047 | 1/1/1357:1361, 1/1/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_7SS9_048 | 1/1/1415:1416, 1/1/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_7SS9_049 | 1/1/1417:1421, 1/1/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_7SS9_050 | 1/1/1432:1435, 1/1/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_7SS9_051 | 1/1/1437:1441, 1/1/1550:1555 | No text annotation Not in a motif group | ||
| IL_7SS9_052 | 1/1/1449:1451, 1/1/1459:1462 | No text annotation Not in a motif group | geometric IL_6CZR_118 IL_95997.1 | |
| IL_7SS9_053 | 1/1/1467:1471, 1/1/1520:1525 | tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_056 IL_62654.1 | |
| IL_7SS9_054 | 1/1/1474:1478, 1/1/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_7SS9_055 | 1/1/1481:1482, 1/1/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.4 | |
| IL_7SS9_056 | 1/1/1489:1491, 1/1/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_7SS9_057 | 1/1/1526:1529, 1/1/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_7SS9_058 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_7SS9_059 | 1/1/1663:1665, 1/1/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
| IL_7SS9_060 | 1/1/1666:1674, 1/1/1990:1994 | No text annotation Not in a motif group | ||
| IL_7SS9_061 | 1/1/1685:1691, 1/1/1696:1703 | No text annotation Not in a motif group | ||
| IL_7SS9_062 | 1/1/1712:1718, 1/1/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_7SS9_063 | 1/1/1719:1724, 1/1/1736:1741 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_7SS9_064 | 1/1/1770:1771, 1/1/1980:1982 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
| IL_7SS9_065 | 1/1/1798:1804, 1/1/1813:1821 | Kink-turn related Not in a motif group | homologous IL_4WF9_069 IL_17069.3 | |
| IL_7SS9_066 | 1/1/1837:1840, 1/1/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_066 IL_88739.1 | |
| IL_7SS9_067 | 1/1/1841:1842, 1/1/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_7SS9_068 | 1/1/1846:1849, 1/1/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7A0S_068 IL_88739.1 | |
| IL_7SS9_069 | 1/1/1863:1867, 1/1/1874:1879 | No text annotation Not in a motif group | ||
| IL_7SS9_070 | 1/1/1933:1934, 1/1/1964:1967 | No text annotation Not in a motif group | homologous IL_4WF9_076 IL_59677.2 | |
| IL_7SS9_071 | 1/1/1934:1945, 1/1/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_7SS9_072 | 1/1/2050:2052, 1/1/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_7SS9_073 | 1/1/2054:2056, 1/1/2612:2615 | No text annotation Not in a motif group | homologous IL_4WF9_079 IL_54678.5 | |
| IL_7SS9_074 | 1/1/2067:2069, 1/1/2442:2443 | Single bulged U Not in a motif group | homologous IL_4WF9_080 IL_83039.13 | |
| IL_7SS9_075 | 1/1/2070:2071, 1/1/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_7SS9_076 | 1/1/2081:2083, 1/1/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_7SS9_077 | 1/1/2085:2087, 1/1/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_7SS9_078 | 1/1/2102:2105, 1/1/2184:2187 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.2 | |
| IL_7SS9_079 | 1/1/2105:2121, 1/1/2177:2184 | No text annotation Not in a motif group | ||
| IL_7SS9_080 | 1/1/2202:2204, 1/1/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_7SS9_081 | 1/1/2350:2353, 1/1/2364:2367 | Double sheared Not in a motif group | homologous IL_4WF9_087 IL_09705.9 | |
| IL_7SS9_082 | 1/1/2401:2403, 1/1/2414:2415 | Single bulged U Not in a motif group | geometric IL_5TBW_131 IL_83039.13 | |
| IL_7SS9_083 | 1/1/2454:2455, 1/1/2496:2498 | Major groove platform Not in a motif group | homologous IL_7A0S_084 IL_27635.1 | |
| IL_7SS9_084 | 1/1/2457:2459, 1/1/2493:2494 | Major groove platform Not in a motif group | geometric IL_7A0S_085 IL_27635.1 | |
| IL_7SS9_085 | 1/1/2459:2461, 1/1/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_337 IL_92788.2 | |
| IL_7SS9_086 | 1/1/2466:2470, 1/1/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_7SS9_087 | 1/1/2507:2508, 1/1/2580:2582 | Major groove platform Not in a motif group | homologous IL_7A0S_088 IL_76223.2 | |
| IL_7SS9_088 | 1/1/2510:2512, 1/1/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_7SS9_089 | 1/1/2512:2513, 1/1/2571:2574 | No text annotation Not in a motif group | homologous IL_4WF9_096 IL_71530.2 | |
| IL_7SS9_090 | 1/1/2522:2523, 1/1/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_7SS9_091 | 1/1/2591:2592, 1/1/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_7SS9_092 | 1/1/2634:2640, 1/1/2774:2784 | No text annotation Not in a motif group | ||
| IL_7SS9_093 | 1/1/2652:2658, 1/1/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_5J7L_346 IL_16458.1 | |
| IL_7SS9_094 | 1/1/2680:2684, 1/1/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_7SS9_095 | 1/1/2687:2691, 1/1/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_7SS9_096 | 1/1/2695:2696, 1/1/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_7SS9_097 | 1/1/2737:2742, 1/1/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7A0S_098 IL_49767.5 | |
| IL_7SS9_098 | 1/1/2806:2811, 1/1/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_49460.2 | |
| IL_7SS9_099 | 1/1/2838:2839, 1/1/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_7SS9_100 | 1/1/2843:2846, 1/1/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_7SS9_101 | 1/1/2847:2852, 1/1/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 | |
| IL_7SS9_102 | 1/2/17:18, 1/2/65:67 | Major groove intercalation Not in a motif group | homologous IL_4V9F_101 IL_37497.2 | |
| IL_7SS9_103 | 1/2/23:28, 1/2/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_7SS9_104 | 1/2/30:31, 1/2/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_7SS9_105 | 1/2/71:79, 1/2/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
| IL_7SS9_106 | 1/3/30:32, 1/3/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_7SS9_107 | 1/3/44:45, 1/3/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_7SS9_108 | 1/3/47:52, 1/3/359:361 | No text annotation Not in a motif group | geometric IL_6CZR_115 IL_11178.1 | |
| IL_7SS9_109 | 1/3/54:58, 1/3/354:357 | No text annotation Not in a motif group | ||
| IL_7SS9_110 | 1/3/62:66, 1/3/103:105 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 | |
| IL_7SS9_111 | 1/3/66:69, 1/3/99:103 | No text annotation Not in a motif group | ||
| IL_7SS9_112 | 1/3/70:73, 1/3/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_7SS9_113 | 1/3/128:131, 1/3/231:233 | No text annotation Not in a motif group | ||
| IL_7SS9_114 | 1/3/132:136, 1/3/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_7SS9_115 | 1/3/144:146, 1/3/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_7SS9_116 | 1/3/147:153, 1/3/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_7SS9_117 | 1/3/203:206, 1/3/213:214 | No text annotation Not in a motif group | ||
| IL_7SS9_118 | 1/3/242:247, 1/3/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_7SS9_119 | 1/3/248:253, 1/3/273:276 | No text annotation Not in a motif group | ||
| IL_7SS9_120 | 1/3/292:294, 1/3/303:308 | No text annotation Not in a motif group | ||
| IL_7SS9_121 | 1/3/367:369, 1/3/392:393 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_7SS9_122 | 1/3/370:375, 1/3/389:391 | No text annotation Not in a motif group | ||
| IL_7SS9_123 | 1/3/375:376, 1/3/387:389 | Single bulged G Not in a motif group | geometric IL_4LFB_016 IL_00225.2 | |
| IL_7SS9_124 | 1/3/409:416, 1/3/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_7SS9_125 | 1/3/440:444, 1/3/490:497 | No text annotation Not in a motif group | ||
| IL_7SS9_126 | 1/3/445:450, 1/3/483:489 | No text annotation Not in a motif group | ||
| IL_7SS9_127 | 1/3/450:455, 1/3/477:483 | No text annotation Not in a motif group | geometric IL_5J7L_023 IL_70801.1 | |
| IL_7SS9_128 | 1/3/504:511, 1/3/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_7SS9_129 | 1/3/515:521, 1/3/528:536 | No text annotation Not in a motif group | ||
| IL_7SS9_130 | 1/3/569:575, 1/3/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_7SS9_131 | 1/3/578:584, 1/3/757:763 | No text annotation Not in a motif group | ||
| IL_7SS9_132 | 1/3/588:590, 1/3/649:651 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_7SS9_133 | 1/3/594:596, 1/3/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_7SS9_134 | 1/3/597:599, 1/3/639:643 | 8-nt loop receptor Not in a motif group | geometric IL_6CK5_002 IL_93341.1 | |
| IL_7SS9_135 | 1/3/605:612, 1/3/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_7SS9_136 | 1/3/654:655, 1/3/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_7SS9_137 | 1/3/658:660, 1/3/745:748 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_7SS9_138 | 1/3/661:666, 1/3/740:744 | No text annotation Not in a motif group | ||
| IL_7SS9_139 | 1/3/682:688, 1/3/699:708 | No text annotation Not in a motif group | ||
| IL_7SS9_140 | 1/3/774:778, 1/3/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_7SS9_141 | 1/3/779:783, 1/3/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_145 IL_17136.1 | |
| IL_7SS9_142 | 1/3/887:894, 1/3/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_7SS9_143 | 1/3/922:923, 1/3/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_7SS9_144 | 1/3/925:927, 1/3/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_7SS9_145 | 1/3/933:936, 1/3/1379:1384 | No text annotation Not in a motif group | ||
| IL_7SS9_146 | 1/3/953:954, 1/3/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_7SS9_147 | 1/3/997:999, 1/3/1041:1044 | No text annotation Not in a motif group | geometric IL_4V9F_053 IL_46796.1 | |
| IL_7SS9_148 | 1/3/1002:1006, 1/3/1023:1038 | No text annotation Not in a motif group | ||
| IL_7SS9_149 | 1/3/1048:1050, 1/3/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_7SS9_150 | 1/3/1051:1056, 1/3/1204:1207 | tSH-tHW Not in a motif group | geometric IL_5UNE_005 IL_21270.1 | |
| IL_7SS9_151 | 1/3/1057:1058, 1/3/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_7SS9_152 | 1/3/1060:1061, 1/3/1195:1197 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_7SS9_153 | 1/3/1061:1063, 1/3/1193:1195 | No text annotation Not in a motif group | homologous IL_5J7L_050 IL_95997.1 | |
| IL_7SS9_154 | 1/3/1124:1128, 1/3/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_7SS9_155 | 1/3/1129:1132, 1/3/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_7SS9_156 | 1/3/1158:1161, 1/3/1175:1181 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
| IL_7SS9_157 | 1/3/1255:1258, 1/3/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_7SS9_158 | 1/3/1259:1263, 1/3/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_7SS9_159 | 1/3/1303:1308, 1/3/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_7SS9_160 | 1/3/1399:1401, 1/3/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_7SS9_161 | 1/3/1401:1404, 1/3/1497:1501 | No text annotation Not in a motif group | ||
| IL_7SS9_162 | 1/3/1405:1407, 1/3/1494:1496 | No text annotation Not in a motif group | geometric IL_5VCI_002 IL_95997.1 | |
| IL_7SS9_163 | 1/3/1407:1409, 1/3/1491:1494 | Decoding loop related Not in a motif group | geometric IL_2O3X_003 IL_82842.2 | |
| IL_7SS9_164 | 1/3/1412:1414, 1/3/1486:1488 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_95997.1 | |
| IL_7SS9_165 | 1/3/1416:1419, 1/3/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_7SS9_166 | 1/3/1430:1435, 1/3/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_7SS9_167 | 1/3/1440:1442, 1/3/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_42622.2 | |
| IL_7SS9_168 | 1/3/1444:1449, 1/3/1454:1458 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7SS9_001 | 1/1/30:31, 1/1/474:481, 1/1/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_7SS9_002 | 1/1/56:57, 1/1/70:76, 1/1/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_7SS9_003 | 1/1/683:689, 1/1/773:775, 1/1/791:794 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_7SS9_004 | 1/1/698:700, 1/1/732:736, 1/1/760:763 | No text annotation Not in a motif group | homologous J3_4WF9_003 NA | |
| J3_7SS9_005 | 1/1/1055:1059, 1/1/1079:1090, 1/1/1101:1104 | No text annotation Not in a motif group | ||
| J3_7SS9_006 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_7SS9_007 | 1/1/1306:1309, 1/1/1605:1611, 1/1/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_7SS9_008 | 1/1/1344:1349, 1/1/1382:1385, 1/1/1402:1403 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_7SS9_009 | 1/1/2091:2093, 1/1/2196:2200, 1/1/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_7SS9_010 | 1/1/2295:2299, 1/1/2317:2323, 1/1/2332:2337 | No text annotation Not in a motif group | ||
| J3_7SS9_011 | 1/1/2517:2520, 1/1/2545:2547, 1/1/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_7SS9_012 | 1/1/2789:2792, 1/1/2804:2806, 1/1/2892:2894 | No text annotation Not in a motif group | ||
| J3_7SS9_013 | 1/1/2812:2815, 1/1/2831:2836, 1/1/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_7SS9_014 | 1/2/10:16, 1/2/68:70, 1/2/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA | |
| J3_7SS9_015 | 1/3/46:47, 1/3/361:367, 1/3/393:395 | No text annotation Not in a motif group | homologous J3_6CZR_015 NA | |
| J3_7SS9_016 | 1/3/586:588, 1/3/651:654, 1/3/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_7SS9_017 | 1/3/826:829, 1/3/857:861, 1/3/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_7SS9_018 | 1/3/936:939, 1/3/1344:1350, 1/3/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_7SS9_019 | 1/3/943:946, 1/3/1235:1237, 1/3/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_7SS9_020 | 1/3/954:962, 1/3/973:984, 1/3/1221:1226 | No text annotation Not in a motif group | ||
| J3_7SS9_021 | 1/3/990:997, 1/3/1044:1047, 1/3/1210:1215 | No text annotation Not in a motif group | ||
| J3_7SS9_022 | 1/3/1063:1068, 1/3/1107:1113, 1/3/1187:1193 | No text annotation Not in a motif group | ||
| J3_7SS9_023 | 1/3/1073:1074, 1/3/1083:1087, 1/3/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_7SS9_024 | 1/3/1116:1119, 1/3/1154:1158, 1/3/1181:1184 | No text annotation Not in a motif group | ||
| J3_7SS9_025 | 1/3/1237:1241, 1/3/1296:1303, 1/3/1334:1337 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: