1K8A | Motifs

Valid loops

#	loop id	location	annotation	motif
1	HL_1K8A_001 ➜	1/A/55:64	NA	NA
2	HL_1K8A_002 ➜	1/A/83:91	NA	NA
3	HL_1K8A_003 ➜	1/A/118:122	NA	NA
4	HL_1K8A_005 ➜	1/A/136:142	NA	NA
5	HL_1K8A_006 ➜	1/A/164:171	NA	NA
6	HL_1K8A_007 ➜	1/A/195:201	NA	NA
7	HL_1K8A_008 ➜	1/A/217:223	NA	NA
8	HL_1K8A_009 ➜	1/A/252:257	NA	NA
9	HL_1K8A_010 ➜	1/A/312:319	NA	NA
10	HL_1K8A_011 ➜	1/A/326:330	NA	NA
11	HL_1K8A_012 ➜	1/A/334:342	NA	NA
12	HL_1K8A_013 ➜	1/A/390:399	NA	NA
13	HL_1K8A_014 ➜	1/A/416:424	NA	NA
14	HL_1K8A_015 ➜	1/A/468:473	NA	NA
15	HL_1K8A_016 ➜	1/A/493:499	NA	NA
16	HL_1K8A_017 ➜	1/A/576:581	NA	NA
17	HL_1K8A_018 ➜	1/A/623:632	NA	NA
18	HL_1K8A_019 ➜	1/A/670:676	NA	NA
19	HL_1K8A_020 ➜	1/A/690:695	NA	NA
20	HL_1K8A_022 ➜	1/A/733:738	NA	NA
21	HL_1K8A_023 ➜	1/A/804:809	NA	NA
22	HL_1K8A_024 ➜	1/A/837:846	NA	NA
23	HL_1K8A_025 ➜	1/A/872:878	NA	NA
24	HL_1K8A_026 ➜	1/A/919:924	NA	NA
25	HL_1K8A_028 ➜	1/A/1054:1060	NA	NA
26	HL_1K8A_029 ➜	1/A/1076:1083	NA	NA
27	HL_1K8A_031 ➜	1/A/1196:1203	NA	NA
28	HL_1K8A_032 ➜	1/A/1274:1282	NA	NA
29	HL_1K8A_033 ➜	1/A/1326:1331	NA	NA
30	HL_1K8A_034 ➜	1/A/1387:1395	NA	NA
31	HL_1K8A_035 ➜	1/A/1430:1436	NA	NA
32	HL_1K8A_036 ➜	1/A/1468:1474	NA	NA
33	HL_1K8A_037 ➜	1/A/1498:1507	NA	NA
34	HL_1K8A_039 ➜	1/A/1594:1600	NA	NA
35	HL_1K8A_040 ➜	1/A/1628:1633	NA	NA
36	HL_1K8A_041 ➜	1/A/1651:1655	NA	NA
37	HL_1K8A_042 ➜	1/A/1687:1694	NA	NA
38	HL_1K8A_043 ➜	1/A/1705:1713	NA	NA
39	HL_1K8A_044 ➜	1/A/1769:1774	NA	NA
40	HL_1K8A_045 ➜	1/A/1793:1799	NA	NA
41	HL_1K8A_046 ➜	1/A/1808:1812	NA	NA
42	HL_1K8A_047 ➜	1/A/1833:1843	NA	NA
43	HL_1K8A_048 ➜	1/A/1862:1867	NA	NA
44	HL_1K8A_049 ➜	1/A/1916:1923	NA	NA
45	HL_1K8A_051 ➜	1/A/1990:1998	NA	NA
46	HL_1K8A_052 ➜	1/A/2068:2077	NA	NA
47	HL_1K8A_054 ➜	1/A/2248:2253	NA	NA
48	HL_1K8A_055 ➜	1/A/2281:2289	NA	NA
49	HL_1K8A_056 ➜	1/A/2298:2310	NA	NA
50	HL_1K8A_058 ➜	1/A/2358:2365	NA	NA
51	HL_1K8A_059 ➜	1/A/2389:2399	NA	NA
52	HL_1K8A_060 ➜	1/A/2411:2416	NA	NA
53	HL_1K8A_061 ➜	1/A/2442:2450	NA	NA
54	HL_1K8A_062 ➜	1/A/2506:2514	NA	NA
55	HL_1K8A_063 ➜	1/A/2563:2570	NA	NA
56	HL_1K8A_064 ➜	1/A/2585:2593	NA	NA
57	HL_1K8A_065 ➜	1/A/2629:2634	NA	NA
58	HL_1K8A_066 ➜	1/A/2695:2700	NA	NA
59	HL_1K8A_067 ➜	1/A/2737:2742	NA	NA
60	HL_1K8A_068 ➜	1/A/2780:2794	NA	NA
61	HL_1K8A_069 ➜	1/A/2836:2844	NA	NA
62	HL_1K8A_070 ➜	1/A/2876:2881	NA	NA
63	HL_1K8A_071 ➜	1/B/3037:3043	NA	NA
64	HL_1K8A_072 ➜	1/B/3089:3094	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_1K8A_004 ➜	missing nts	NA
2	HL_1K8A_021 ➜	missing nts	NA
3	HL_1K8A_027 ➜	missing nts	NA
4	HL_1K8A_030 ➜	all high RSRZ	NA
5	HL_1K8A_038 ➜	missing nts	NA
6	HL_1K8A_050 ➜	missing nts	NA
7	HL_1K8A_053 ➜	missing nts	NA
8	HL_1K8A_057 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_1K8A_001 ➜	1/A/21:27,1/A/516:522	NA	NA
2	IL_1K8A_002 ➜	1/A/33:34,1/A/448:450	NA	NA
3	IL_1K8A_003 ➜	1/A/39:41,1/A/440:443	NA	NA
4	IL_1K8A_004 ➜	1/A/77:81,1/A/93:100	NA	NA
5	IL_1K8A_005 ➜	1/A/153:154,1/A/182:184	NA	NA
6	IL_1K8A_006 ➜	1/A/158:164,1/A/171:178	NA	NA
7	IL_1K8A_007 ➜	1/A/210:216,1/A/224:229	NA	NA
8	IL_1K8A_008 ➜	1/A/245:248,1/A/265:266	NA	NA
9	IL_1K8A_009 ➜	1/A/248:249,1/A/260:265	NA	NA
10	IL_1K8A_010 ➜	1/A/274:275,1/A/374:376	NA	NA
11	IL_1K8A_012 ➜	1/A/287:290,1/A/362:365	NA	NA
12	IL_1K8A_013 ➜	1/A/290:296,1/A/355:362	NA	NA
13	IL_1K8A_014 ➜	1/A/307:309,1/A/322:323	NA	NA
14	IL_1K8A_015 ➜	1/A/487:491,1/A/501:515	NA	NA
15	IL_1K8A_016 ➜	1/A/548:553,1/A/606:608	NA	NA
16	IL_1K8A_017 ➜	1/A/554:555,1/A/602:605	NA	NA
17	IL_1K8A_018 ➜	1/A/558:561,1/A/596:599	NA	NA
18	IL_1K8A_019 ➜	1/A/562:567,1/A/591:595	NA	NA
19	IL_1K8A_020 ➜	1/A/567:572,1/A/585:591	NA	NA
20	IL_1K8A_021 ➜	1/A/663:667,1/A/679:683	NA	NA
21	IL_1K8A_022 ➜	1/A/699:702,1/A/726:727	NA	NA
22	IL_1K8A_023 ➜	1/A/705:709,1/A/719:723	NA	NA
23	IL_1K8A_024 ➜	1/A/763:765,1/A/899:901	NA	NA
24	IL_1K8A_025 ➜	1/A/765:769,1/A/892:899	NA	NA
25	IL_1K8A_026 ➜	1/A/788:789,1/A/856:858	NA	NA
26	IL_1K8A_027 ➜	1/A/793:794,1/A/819:821	NA	NA
27	IL_1K8A_028 ➜	1/A/794:798,1/A/815:819	NA	NA
28	IL_1K8A_029 ➜	1/A/830:833,1/A/849:851	NA	NA
29	IL_1K8A_030 ➜	1/A/834:836,1/A/847:848	NA	NA
30	IL_1K8A_031 ➜	1/A/868:870,1/A/880:884	NA	NA
31	IL_1K8A_032 ➜	1/A/936:940,1/A/1026:1034	NA	NA
32	IL_1K8A_033 ➜	1/A/942:944,1/A/1023:1024	NA	NA
33	IL_1K8A_034 ➜	1/A/952:956,1/A/1011:1015	NA	NA
34	IL_1K8A_035 ➜	1/A/956:957,1/A/1009:1011	NA	NA
35	IL_1K8A_036 ➜	1/A/958:964,1/A/1004:1008	NA	NA
36	IL_1K8A_037 ➜	1/A/965:968,1/A/1000:1003	NA	NA
37	IL_1K8A_038 ➜	1/A/1095:1099,1/A/1257:1261	NA	NA
38	IL_1K8A_039 ➜	1/A/1101:1108,1/A/1254:1255	NA	NA
39	IL_1K8A_040 ➜	1/A/1108:1110,1/A/1253:1254	NA	NA
40	IL_1K8A_041 ➜	1/A/1115:1121,1/A/1243:1248	NA	NA
41	IL_1K8A_042 ➜	1/A/1136:1138,1/A/1225:1226	NA	NA
42	IL_1K8A_043 ➜	1/A/1147:1155,1/A/1212:1216	NA	NA
43	IL_1K8A_045 ➜	1/A/1269:1270,1/A/1286:1289	NA	NA
44	IL_1K8A_046 ➜	1/A/1301:1303,1/A/1351:1354	NA	NA
45	IL_1K8A_047 ➜	1/A/1303:1305,1/A/1349:1351	NA	NA
46	IL_1K8A_048 ➜	1/A/1312:1319,1/A/1338:1342	NA	NA
47	IL_1K8A_049 ➜	1/A/1367:1373,1/A/2052:2057	NA	NA
48	IL_1K8A_050 ➜	1/A/1416:1419,1/A/1678:1679	NA	NA
49	IL_1K8A_051 ➜	1/A/1425:1429,1/A/1437:1439	NA	NA
50	IL_1K8A_052 ➜	1/A/1456:1460,1/A/1483:1489	NA	NA
51	IL_1K8A_053 ➜	1/A/1465:1467,1/A/1475:1478	NA	NA
52	IL_1K8A_054 ➜	1/A/1521:1529,1/A/1662:1665	NA	NA
53	IL_1K8A_055 ➜	1/A/1542:1546,1/A/1639:1643	NA	NA
54	IL_1K8A_056 ➜	1/A/1570:1574,1/A/1622:1627	NA	NA
55	IL_1K8A_057 ➜	1/A/1578:1583,1/A/1612:1618	NA	NA
56	IL_1K8A_058 ➜	1/A/1587:1592,1/A/1602:1608	NA	NA
57	IL_1K8A_059 ➜	1/A/1728:1734,1/A/2045:2047	NA	NA
58	IL_1K8A_060 ➜	1/A/1741:1743,1/A/2036:2038	NA	NA
59	IL_1K8A_061 ➜	1/A/1744:1747,1/A/2034:2035	NA	NA
60	IL_1K8A_062 ➜	1/A/1747:1752,1/A/2031:2034	NA	NA
61	IL_1K8A_063 ➜	1/A/1764:1769,1/A/1774:1780	NA	NA
62	IL_1K8A_064 ➜	1/A/1826:1827,1/A/2021:2023	NA	NA
63	IL_1K8A_065 ➜	1/A/1854:1860,1/A/1869:1877	NA	NA
64	IL_1K8A_066 ➜	1/A/1893:1896,1/A/1943:1944	NA	NA
65	IL_1K8A_067 ➜	1/A/1897:1898,1/A/1939:1942	NA	NA
66	IL_1K8A_068 ➜	1/A/1902:1905,1/A/1934:1935	NA	NA
67	IL_1K8A_069 ➜	1/A/1907:1913,1/A/1926:1932	NA	NA
68	IL_1K8A_070 ➜	1/A/1974:1975,1/A/2005:2008	NA	NA
69	IL_1K8A_071 ➜	1/A/1975:1986,1/A/2002:2005	NA	NA
70	IL_1K8A_072 ➜	1/A/2090:2093,1/A/2652:2654	NA	NA
71	IL_1K8A_073 ➜	1/A/2095:2097,1/A/2647:2650	NA	NA
72	IL_1K8A_074 ➜	1/A/2108:2110,1/A/2477:2478	NA	NA
73	IL_1K8A_075 ➜	1/A/2111:2112,1/A/2473:2476	NA	NA
74	IL_1K8A_076 ➜	1/A/2122:2124,1/A/2269:2272	NA	NA
75	IL_1K8A_077 ➜	1/A/2279:2280,1/A/2290:2292	NA	NA
76	IL_1K8A_078 ➜	1/A/2331:2333,1/A/2351:2355	NA	NA
77	IL_1K8A_079 ➜	1/A/2436:2438,1/A/2454:2455	NA	NA
78	IL_1K8A_080 ➜	1/A/2489:2490,1/A/2531:2533	NA	NA
79	IL_1K8A_081 ➜	1/A/2492:2494,1/A/2528:2529	NA	NA
80	IL_1K8A_082 ➜	1/A/2494:2496,1/A/2524:2528	NA	NA
81	IL_1K8A_083 ➜	1/A/2501:2505,1/A/2515:2519	NA	NA
82	IL_1K8A_084 ➜	1/A/2542:2543,1/A/2615:2617	NA	NA
83	IL_1K8A_085 ➜	1/A/2545:2547,1/A/2609:2613	NA	NA
84	IL_1K8A_086 ➜	1/A/2547:2548,1/A/2606:2609	NA	NA
85	IL_1K8A_087 ➜	1/A/2557:2558,1/A/2575:2578	NA	NA
86	IL_1K8A_088 ➜	1/A/2626:2627,1/A/2636:2638	NA	NA
87	IL_1K8A_089 ➜	1/A/2672:2676,1/A/2809:2817	NA	NA
88	IL_1K8A_090 ➜	1/A/2689:2695,1/A/2700:2705	NA	NA
89	IL_1K8A_091 ➜	1/A/2717:2721,1/A/2761:2763	NA	NA
90	IL_1K8A_092 ➜	1/A/2724:2728,1/A/2754:2758	NA	NA
91	IL_1K8A_093 ➜	1/A/2732:2733,1/A/2746:2750	NA	NA
92	IL_1K8A_094 ➜	1/A/2772:2777,1/A/2797:2802	NA	NA
93	IL_1K8A_095 ➜	1/A/2855:2857,1/A/2900:2903	NA	NA
94	IL_1K8A_096 ➜	1/A/2860:2861,1/A/2895:2897	NA	NA
95	IL_1K8A_097 ➜	1/A/2864:2869,1/A/2888:2892	NA	NA
96	IL_1K8A_098 ➜	1/A/2873:2876,1/A/2881:2884	NA	NA
97	IL_1K8A_099 ➜	1/B/3015:3016,1/B/3064:3066	NA	NA
98	IL_1K8A_100 ➜	1/B/3021:3028,1/B/3054:3059	NA	NA
99	IL_1K8A_101 ➜	1/B/3029:3030,1/B/3050:3053	NA	NA
100	IL_1K8A_102 ➜	1/B/3033:3037,1/B/3043:3047	NA	NA
101	IL_1K8A_103 ➜	1/B/3075:3081,1/B/3101:3106	NA	NA
102	IL_1K8A_104 ➜	1/B/3086:3088,1/B/3095:3096	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_1K8A_011 ➜	all high RSRZ	NA
2	IL_1K8A_044 ➜	all high RSRZ	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_1K8A_001 ➜	1/A/240:244,1/A/267:273,1/A/377:379	NA	NA
2	J3_1K8A_002 ➜	1/A/774:780,1/A/866:868,1/A/884:887	NA	NA
3	J3_1K8A_003 ➜	1/A/789:791,1/A/823:828,1/A/853:856	NA	NA
4	J3_1K8A_004 ➜	1/A/1159:1161,1/A/1185:1194,1/A/1205:1208	NA	NA
5	J3_1K8A_005 ➜	1/A/1404:1409,1/A/1700:1703,1/A/1715:1718	NA	NA
6	J3_1K8A_006 ➜	1/A/1412:1415,1/A/1680:1686,1/A/1695:1697	NA	NA
7	J3_1K8A_007 ➜	1/A/2131:2134,1/A/2241:2245,1/A/2256:2262	NA	NA
8	J3_1K8A_008 ➜	1/A/2329:2331,1/A/2355:2357,1/A/2366:2371	NA	NA
9	J3_1K8A_009 ➜	1/A/2552:2555,1/A/2580:2583,1/A/2595:2602	NA	NA
10	J3_1K8A_010 ➜	1/B/3009:3014,1/B/3067:3071,1/B/3110:3114	NA	NA

Problematic loops

No problematic loops

1K8A Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops