3J9Y Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_3J9Y_001 | 1/A/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
HL_3J9Y_002 | 1/A/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_00807.1 | |
HL_3J9Y_003 | 1/A/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_70546.2 | |
HL_3J9Y_004 | 1/A/137:142 | No text annotation Not in a motif group | ||
HL_3J9Y_005 | 1/A/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
HL_3J9Y_006 | 1/A/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_06192.3 | |
HL_3J9Y_007 | 1/A/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_56241.2 | |
HL_3J9Y_008 | 1/A/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.8 | |
HL_3J9Y_009 | 1/A/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_41998.2 | |
HL_3J9Y_010 | 1/A/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.10 | |
HL_3J9Y_011 | 1/A/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.5 | |
HL_3J9Y_012 | 1/A/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.2 | |
HL_3J9Y_013 | 1/A/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_85603.1 | |
HL_3J9Y_014 | 1/A/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_85603.1 | |
HL_3J9Y_015 | 1/A/545:548 | No text annotation Not in a motif group | homologous HL_7A0S_017 HL_69858.1 | |
HL_3J9Y_016 | 1/A/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_41998.2 | |
HL_3J9Y_017 | 1/A/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.4 | |
HL_3J9Y_018 | 1/A/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_85603.1 | |
HL_3J9Y_019 | 1/A/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_77805.2 | |
HL_3J9Y_020 | 1/A/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.3 | |
HL_3J9Y_021 | 1/A/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
HL_3J9Y_022 | 1/A/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_56241.2 | |
HL_3J9Y_023 | 1/A/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 NA | |
HL_3J9Y_025 | 1/A/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
HL_3J9Y_026 | 1/A/978:985 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_64430.3 | |
HL_3J9Y_027 | 1/A/1092:1099 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.3 | |
HL_3J9Y_028 | 1/A/1168:1181 | No text annotation Not in a motif group | ||
HL_3J9Y_029 | 1/A/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.3 | |
HL_3J9Y_030 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_41998.2 | |
HL_3J9Y_031 | 1/A/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.2 | |
HL_3J9Y_032 | 1/A/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.3 | |
HL_3J9Y_033 | 1/A/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 NA | |
HL_3J9Y_034 | 1/A/1450:1461 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.3 | |
HL_3J9Y_035 | 1/A/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.2 | |
HL_3J9Y_036 | 1/A/1533:1538 | No text annotation Not in a motif group | ||
HL_3J9Y_037 | 1/A/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.6 | |
HL_3J9Y_038 | 1/A/1612:1619 | No text annotation Not in a motif group | ||
HL_3J9Y_039 | 1/A/1629:1637 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
HL_3J9Y_040 | 1/A/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 NA | |
HL_3J9Y_041 | 1/A/1728:1731 | No text annotation Not in a motif group | homologous HL_5J7L_176 HL_75930.1 | |
HL_3J9Y_042 | 1/A/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.6 | |
HL_3J9Y_043 | 1/A/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.6 | |
HL_3J9Y_044 | 1/A/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_85603.1 | |
HL_3J9Y_045 | 1/A/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_85603.1 | |
HL_3J9Y_046 | 1/A/1910:1920 | No text annotation Not in a motif group | homologous HL_5J7L_181 NA | |
HL_3J9Y_047 | 1/A/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.2 | |
HL_3J9Y_048 | 1/A/2027:2036 | No text annotation Not in a motif group | ||
HL_3J9Y_049 | 1/A/2142:2149 | No text annotation Not in a motif group | ||
HL_3J9Y_050 | 1/A/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.7 | |
HL_3J9Y_051 | 1/A/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
HL_3J9Y_052 | 1/A/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 NA | |
HL_3J9Y_053 | 1/A/2303:2313 | No text annotation Not in a motif group | homologous HL_5J7L_188 HL_11805.4 | |
HL_3J9Y_054 | 1/A/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.5 | |
HL_3J9Y_055 | 1/A/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.3 | |
HL_3J9Y_056 | 1/A/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_85603.1 | |
HL_3J9Y_057 | 1/A/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_40210.3 | |
HL_3J9Y_058 | 1/A/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.3 | |
HL_3J9Y_059 | 1/A/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_91104.2 | |
HL_3J9Y_060 | 1/A/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
HL_3J9Y_061 | 1/A/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_85603.1 | |
HL_3J9Y_062 | 1/A/2658:2663 | GNRA Not in a motif group | geometric HL_5J7L_197 HL_85603.1 | |
HL_3J9Y_063 | 1/A/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.2 | |
HL_3J9Y_064 | 1/A/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.8 | |
HL_3J9Y_065 | 1/A/2795:2801 | Other HL Not in a motif group | homologous HL_5J7L_200 HL_34168.3 | |
HL_3J9Y_066 | 1/A/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_64690.2 | |
HL_3J9Y_067 | 1/A/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_85603.1 | |
HL_3J9Y_068 | 1/B/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_070 NA | |
HL_3J9Y_069 | 1/B/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.6 | |
HL_3J9Y_070 | 1/a/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
HL_3J9Y_071 | 1/a/78:91 | No text annotation Not in a motif group | ||
HL_3J9Y_072 | 1/a/157:164 | No text annotation Not in a motif group | ||
HL_3J9Y_073 | 1/a/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_85603.1 | |
HL_3J9Y_074 | 1/a/206:213 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
HL_3J9Y_075 | 1/a/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.3 | |
HL_3J9Y_076 | 1/a/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_85603.1 | |
HL_3J9Y_077 | 1/a/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
HL_3J9Y_078 | 1/a/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_29960.1 | |
HL_3J9Y_079 | 1/a/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_85603.1 | |
HL_3J9Y_080 | 1/a/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_29960.1 | |
HL_3J9Y_081 | 1/a/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.3 | |
HL_3J9Y_082 | 1/a/521:528 | No text annotation Not in a motif group | homologous HL_5J7L_013 NA | |
HL_3J9Y_083 | 1/a/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.3 | |
HL_3J9Y_084 | 1/a/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.2 | |
HL_3J9Y_085 | 1/a/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.3 | |
HL_3J9Y_086 | 1/a/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.2 | |
HL_3J9Y_087 | 1/a/840:846 | No text annotation Not in a motif group | ||
HL_3J9Y_088 | 1/a/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_85603.1 | |
HL_3J9Y_089 | 1/a/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_85603.1 | |
HL_3J9Y_090 | 1/a/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
HL_3J9Y_091 | 1/a/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_85603.1 | |
HL_3J9Y_092 | 1/a/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_85603.1 | |
HL_3J9Y_093 | 1/a/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
HL_3J9Y_094 | 1/a/1134:1140 | No text annotation Not in a motif group | homologous HL_5J7L_025 HL_63154.1 | |
HL_3J9Y_095 | 1/a/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_85603.1 | |
HL_3J9Y_096 | 1/a/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_85603.1 | |
HL_3J9Y_097 | 1/a/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_41998.2 | |
HL_3J9Y_098 | 1/a/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
HL_3J9Y_099 | 1/a/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_29960.1 | |
HL_3J9Y_100 | 1/a/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
HL_3J9Y_101 | 1/v/13:22 | No text annotation Not in a motif group | homologous HL_1QF6_001 NA | |
HL_3J9Y_102 | 1/v/31:39 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
HL_3J9Y_103 | 1/v/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_3J9Y_024 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_3J9Y_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5J7L_245 IL_66414.7 | |
IL_3J9Y_002 | 1/A/36:37, 1/A/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 NA | |
IL_3J9Y_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.5 | |
IL_3J9Y_004 | 1/A/81:85, 1/A/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
IL_3J9Y_005 | 1/A/183:184, 1/A/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.5 | |
IL_3J9Y_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 NA | |
IL_3J9Y_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.3 | |
IL_3J9Y_008 | 1/A/269:271, 1/A/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
IL_3J9Y_009 | 1/A/274:282, 1/A/358:363 | No text annotation Not in a motif group | ||
IL_3J9Y_010 | 1/A/293:295, 1/A/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.2 | |
IL_3J9Y_011 | 1/A/481:484, 1/A/496:509 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.7 | |
IL_3J9Y_012 | 1/A/536:539, 1/A/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.11 | |
IL_3J9Y_013 | 1/A/564:566, 1/A/575:577 | No text annotation Not in a motif group | homologous IL_5J7L_257 IL_86319.3 | |
IL_3J9Y_014 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.2 | |
IL_3J9Y_015 | 1/A/672:674, 1/A/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 NA | |
IL_3J9Y_016 | 1/A/674:678, 1/A/799:806 | No text annotation Not in a motif group | geometric IL_7RQB_018 NA | |
IL_3J9Y_017 | 1/A/697:698, 1/A/763:765 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.7 | |
IL_3J9Y_018 | 1/A/702:703, 1/A/728:730 | Single bulged G Not in a motif group | geometric IL_5J7L_262 IL_00225.4 | |
IL_3J9Y_019 | 1/A/703:707, 1/A/724:728 | Triple sheared Not in a motif group | homologous IL_5J7L_263 IL_56467.9 | |
IL_3J9Y_020 | 1/A/738:740, 1/A/757:758 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.4 | |
IL_3J9Y_021 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.7 | |
IL_3J9Y_022 | 1/A/837:838, 1/A/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 NA | |
IL_3J9Y_023 | 1/A/844:847, 1/A/933:934 | Other IL Not in a motif group | homologous IL_5J7L_267 IL_92001.2 | |
IL_3J9Y_024 | 1/A/847:848, 1/A/930:933 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
IL_3J9Y_025 | 1/A/850:851, 1/A/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.5 | |
IL_3J9Y_026 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
IL_3J9Y_027 | 1/A/862:863, 1/A/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.4 | |
IL_3J9Y_028 | 1/A/864:868, 1/A/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.7 | |
IL_3J9Y_029 | 1/A/870:872, 1/A/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_86319.3 | |
IL_3J9Y_030 | 1/A/875:879, 1/A/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.9 | |
IL_3J9Y_031 | 1/A/880:882, 1/A/894:897 | No text annotation Not in a motif group | ||
IL_3J9Y_032 | 1/A/994:996, 1/A/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 NA | |
IL_3J9Y_033 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.3 | |
IL_3J9Y_034 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.8 | |
IL_3J9Y_035 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.17 | |
IL_3J9Y_036 | 1/A/1018:1024, 1/A/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.4 | |
IL_3J9Y_037 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.2 | |
IL_3J9Y_038 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 NA | |
IL_3J9Y_039 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.4 | |
IL_3J9Y_040 | 1/A/1043:1051, 1/A/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.5 | |
IL_3J9Y_041 | 1/A/1055:1087, 1/A/1102:1104 | No text annotation Not in a motif group | ||
IL_3J9Y_042 | 1/A/1087:1090, 1/A/1101:1102 | No text annotation Not in a motif group | homologous IL_6PRV_002 NA | |
IL_3J9Y_043 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_52767.5 | |
IL_3J9Y_044 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
IL_3J9Y_045 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.3 | |
IL_3J9Y_046 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.8 | |
IL_3J9Y_047 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.3 | |
IL_3J9Y_048 | 1/A/1319:1323, 1/A/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.7 | |
IL_3J9Y_049 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.3 | |
IL_3J9Y_050 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.2 | |
IL_3J9Y_051 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation Not in a motif group | ||
IL_3J9Y_052 | 1/A/1416:1421, 1/A/1577:1582 | No text annotation Not in a motif group | ||
IL_3J9Y_053 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
IL_3J9Y_054 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.2 | |
IL_3J9Y_055 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.3 | |
IL_3J9Y_056 | 1/A/1474:1479, 1/A/1512:1517 | No text annotation Not in a motif group | ||
IL_3J9Y_057 | 1/A/1481:1482, 1/A/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.5 | |
IL_3J9Y_058 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.7 | |
IL_3J9Y_059 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.2 | |
IL_3J9Y_060 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 NA | |
IL_3J9Y_061 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.8 | |
IL_3J9Y_062 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 NA | |
IL_3J9Y_063 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_5J7L_307 IL_76273.2 | |
IL_3J9Y_064 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_65969.3 | |
IL_3J9Y_065 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
IL_3J9Y_066 | 1/A/1720:1724, 1/A/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_96141.2 | |
IL_3J9Y_067 | 1/A/1727:1728, 1/A/1731:1733 | Single bulged C Not in a motif group | geometric IL_5J7L_311 IL_61258.13 | |
IL_3J9Y_068 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A Not in a motif group | homologous IL_7A0S_064 IL_37497.7 | |
IL_3J9Y_069 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.4 | |
IL_3J9Y_070 | 1/A/1837:1840, 1/A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.4 | |
IL_3J9Y_071 | 1/A/1841:1842, 1/A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.3 | |
IL_3J9Y_072 | 1/A/1846:1849, 1/A/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.9 | |
IL_3J9Y_073 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.2 | |
IL_3J9Y_074 | 1/A/1933:1934, 1/A/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_318 IL_59677.3 | |
IL_3J9Y_075 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
IL_3J9Y_076 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.4 | |
IL_3J9Y_077 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation Not in a motif group | ||
IL_3J9Y_078 | 1/A/2064:2066, 1/A/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
IL_3J9Y_079 | 1/A/2067:2070, 1/A/2441:2443 | No text annotation Not in a motif group | homologous IL_5J7L_323 NA | |
IL_3J9Y_080 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform Not in a motif group | geometric IL_5J7L_324 IL_42622.5 | |
IL_3J9Y_081 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.8 | |
IL_3J9Y_082 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_86319.3 | |
IL_3J9Y_083 | 1/A/2103:2105, 1/A/2184:2186 | No text annotation Not in a motif group | geometric IL_3LA5_001 IL_86319.3 | |
IL_3J9Y_084 | 1/A/2105:2120, 1/A/2178:2184 | No text annotation Not in a motif group | ||
IL_3J9Y_085 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.17 | |
IL_3J9Y_086 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.11 | |
IL_3J9Y_087 | 1/A/2401:2403, 1/A/2414:2415 | No text annotation Not in a motif group | ||
IL_3J9Y_088 | 1/A/2453:2455, 1/A/2496:2500 | No text annotation Not in a motif group | homologous IL_5J7L_335 NA | |
IL_3J9Y_089 | 1/A/2456:2459, 1/A/2493:2495 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 NA | |
IL_3J9Y_090 | 1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 NA | |
IL_3J9Y_091 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.9 | |
IL_3J9Y_092 | 1/A/2507:2509, 1/A/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
IL_3J9Y_093 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_340 IL_90933.3 | |
IL_3J9Y_094 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.3 | |
IL_3J9Y_095 | 1/A/2522:2523, 1/A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.4 | |
IL_3J9Y_096 | 1/A/2588:2591, 1/A/2603:2606 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.4 | |
IL_3J9Y_097 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 NA | |
IL_3J9Y_098 | 1/A/2636:2640, 1/A/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.2 | |
IL_3J9Y_099 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 NA | |
IL_3J9Y_100 | 1/A/2680:2684, 1/A/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.7 | |
IL_3J9Y_101 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.4 | |
IL_3J9Y_102 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.3 | |
IL_3J9Y_103 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.6 | |
IL_3J9Y_104 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_49460.2 | |
IL_3J9Y_105 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_4WF9_106 IL_16396.3 | |
IL_3J9Y_106 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.4 | |
IL_3J9Y_107 | 1/A/2847:2852, 1/A/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.6 | |
IL_3J9Y_108 | 1/B/17:18, 1/B/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.7 | |
IL_3J9Y_109 | 1/B/23:28, 1/B/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
IL_3J9Y_110 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.9 | |
IL_3J9Y_111 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_5J7L_358 IL_58103.7 | |
IL_3J9Y_112 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.4 | |
IL_3J9Y_113 | 1/a/30:32, 1/a/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.4 | |
IL_3J9Y_114 | 1/a/44:45, 1/a/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.7 | |
IL_3J9Y_115 | 1/a/47:52, 1/a/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_14177.1 | |
IL_3J9Y_116 | 1/a/54:56, 1/a/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_80097.2 | |
IL_3J9Y_117 | 1/a/63:66, 1/a/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
IL_3J9Y_118 | 1/a/67:69, 1/a/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
IL_3J9Y_119 | 1/a/70:73, 1/a/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
IL_3J9Y_120 | 1/a/75:78, 1/a/91:95 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_7A0S_040 IL_30621.4 | |
IL_3J9Y_121 | 1/a/128:131, 1/a/231:233 | No text annotation Not in a motif group | ||
IL_3J9Y_122 | 1/a/132:136, 1/a/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.4 | |
IL_3J9Y_123 | 1/a/144:146, 1/a/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_70707.3 | |
IL_3J9Y_124 | 1/a/147:153, 1/a/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
IL_3J9Y_125 | 1/a/203:206, 1/a/213:214 | Minor groove platform Not in a motif group | geometric IL_3MXH_005 IL_15052.1 | |
IL_3J9Y_126 | 1/a/242:247, 1/a/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.3 | |
IL_3J9Y_127 | 1/a/249:252, 1/a/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
IL_3J9Y_128 | 1/a/292:293, 1/a/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
IL_3J9Y_129 | 1/a/367:369, 1/a/392:393 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.17 | |
IL_3J9Y_130 | 1/a/371:375, 1/a/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
IL_3J9Y_131 | 1/a/375:376, 1/a/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.4 | |
IL_3J9Y_132 | 1/a/409:416, 1/a/427:433 | No text annotation Not in a motif group | homologous IL_5J7L_020 IL_28026.1 | |
IL_3J9Y_133 | 1/a/440:442, 1/a/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
IL_3J9Y_134 | 1/a/446:450, 1/a/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_88269.3 | |
IL_3J9Y_135 | 1/a/450:455, 1/a/477:483 | No text annotation Not in a motif group | geometric IL_5J7L_023 IL_70801.1 | |
IL_3J9Y_136 | 1/a/504:511, 1/a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.8 | |
IL_3J9Y_137 | 1/a/515:521, 1/a/528:536 | No text annotation Not in a motif group | homologous IL_5J7L_025 NA | |
IL_3J9Y_138 | 1/a/569:575, 1/a/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.1 | |
IL_3J9Y_139 | 1/a/580:584, 1/a/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.2 | |
IL_3J9Y_140 | 1/a/594:596, 1/a/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.4 | |
IL_3J9Y_141 | 1/a/597:598, 1/a/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.9 | |
IL_3J9Y_142 | 1/a/605:612, 1/a/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
IL_3J9Y_143 | 1/a/654:655, 1/a/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_031 IL_50694.3 | |
IL_3J9Y_144 | 1/a/659:660, 1/a/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.5 | |
IL_3J9Y_145 | 1/a/662:666, 1/a/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
IL_3J9Y_146 | 1/a/673:678, 1/a/712:717 | No text annotation Not in a motif group | geometric IL_5J7L_034 IL_04668.2 | |
IL_3J9Y_147 | 1/a/684:688, 1/a/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.3 | |
IL_3J9Y_148 | 1/a/774:778, 1/a/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
IL_3J9Y_149 | 1/a/779:783, 1/a/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.2 | |
IL_3J9Y_150 | 1/a/887:894, 1/a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
IL_3J9Y_151 | 1/a/922:923, 1/a/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.7 | |
IL_3J9Y_152 | 1/a/925:927, 1/a/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.4 | |
IL_3J9Y_153 | 1/a/933:935, 1/a/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
IL_3J9Y_154 | 1/a/953:954, 1/a/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
IL_3J9Y_155 | 1/a/993:997, 1/a/1044:1045 | Minor groove platform Not in a motif group | geometric IL_5J7L_043 IL_47078.1 | |
IL_3J9Y_156 | 1/a/998:999, 1/a/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.5 | |
IL_3J9Y_157 | 1/a/1003:1006, 1/a/1023:1037 | No text annotation Not in a motif group | ||
IL_3J9Y_158 | 1/a/1048:1050, 1/a/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.17 | |
IL_3J9Y_159 | 1/a/1050:1056, 1/a/1204:1208 | No text annotation Not in a motif group | geometric IL_4V88_422 IL_05145.3 | |
IL_3J9Y_160 | 1/a/1057:1058, 1/a/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_80097.2 | |
IL_3J9Y_161 | 1/a/1060:1061, 1/a/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.17 | |
IL_3J9Y_162 | 1/a/1061:1063, 1/a/1193:1195 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_86319.3 | |
IL_3J9Y_163 | 1/a/1122:1128, 1/a/1144:1151 | No text annotation Not in a motif group | ||
IL_3J9Y_164 | 1/a/1129:1133, 1/a/1141:1143 | No text annotation Not in a motif group | ||
IL_3J9Y_165 | 1/a/1158:1161, 1/a/1175:1181 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
IL_3J9Y_166 | 1/a/1246:1253, 1/a/1284:1291 | No text annotation Not in a motif group | ||
IL_3J9Y_167 | 1/a/1255:1258, 1/a/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
IL_3J9Y_168 | 1/a/1259:1263, 1/a/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.9 | |
IL_3J9Y_169 | 1/a/1303:1308, 1/a/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
IL_3J9Y_170 | 1/a/1399:1401, 1/a/1501:1504 | No text annotation Not in a motif group | homologous IL_6CZR_165 NA | |
IL_3J9Y_171 | 1/a/1401:1404, 1/a/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
IL_3J9Y_172 | 1/a/1405:1409, 1/a/1491:1496 | No text annotation Not in a motif group | homologous IL_4LFB_058 NA | |
IL_3J9Y_173 | 1/a/1412:1414, 1/a/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_86319.3 | |
IL_3J9Y_174 | 1/a/1416:1419, 1/a/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.11 | |
IL_3J9Y_175 | 1/a/1430:1435, 1/a/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
IL_3J9Y_176 | 1/a/1440:1442, 1/a/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_42622.5 | |
IL_3J9Y_177 | 1/a/1445:1448, 1/a/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.7 |
Problematic loops
No problematic loops
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_3J9Y_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
J3_3J9Y_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
J3_3J9Y_003 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
J3_3J9Y_004 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
J3_3J9Y_005 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
J3_3J9Y_006 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation Not in a motif group | homologous J3_5J7L_042 NA | |
J3_3J9Y_007 | 1/A/1344:1349, 1/A/1382:1386, 1/A/1401:1403 | No text annotation Not in a motif group | ||
J3_3J9Y_008 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
J3_3J9Y_009 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation Not in a motif group | ||
J3_3J9Y_010 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation Not in a motif group | ||
J3_3J9Y_011 | 1/A/2789:2792, 1/A/2804:2806, 1/A/2892:2894 | No text annotation Not in a motif group | ||
J3_3J9Y_012 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
J3_3J9Y_013 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation Not in a motif group | homologous J3_7A0S_014 NA | |
J3_3J9Y_014 | 1/a/46:47, 1/a/361:367, 1/a/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
J3_3J9Y_015 | 1/a/586:588, 1/a/651:654, 1/a/754:755 | No text annotation Not in a motif group | ||
J3_3J9Y_016 | 1/a/672:673, 1/a/717:725, 1/a/732:734 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
J3_3J9Y_017 | 1/a/826:829, 1/a/857:861, 1/a/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
J3_3J9Y_018 | 1/a/936:939, 1/a/1344:1350, 1/a/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
J3_3J9Y_019 | 1/a/943:946, 1/a/1235:1237, 1/a/1337:1340 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
J3_3J9Y_020 | 1/a/955:962, 1/a/973:984, 1/a/1221:1225 | No text annotation Not in a motif group | ||
J3_3J9Y_021 | 1/a/990:993, 1/a/1045:1047, 1/a/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
J3_3J9Y_022 | 1/a/1063:1068, 1/a/1107:1113, 1/a/1187:1193 | No text annotation Not in a motif group | ||
J3_3J9Y_023 | 1/a/1073:1074, 1/a/1083:1087, 1/a/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
J3_3J9Y_024 | 1/a/1116:1118, 1/a/1155:1158, 1/a/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
J3_3J9Y_025 | 1/a/1237:1241, 1/a/1296:1303, 1/a/1334:1337 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: