Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5UYQ_0011/01/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_5UYQ_0021/01/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_5UYQ_0031/01/123:128No text annotation
Not in a motif group
homologous
HL_5J7L_136
HL_75407.1
HL_5UYQ_0041/01/137:142No text annotation
Not in a motif group
HL_5UYQ_0051/01/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_5UYQ_0061/01/194:201No text annotation
Not in a motif group
geometric
HL_4WF9_006
HL_06192.2
HL_5UYQ_0071/01/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_5UYQ_0081/01/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_5UYQ_0091/01/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_5UYQ_0101/01/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_5UYQ_0111/01/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_5UYQ_0121/01/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_5UYQ_0131/01/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.1
HL_5UYQ_0141/01/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.1
HL_5UYQ_0151/01/544:549No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_5UYQ_0161/01/566:575T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5J7L_150
HL_89380.2
HL_5UYQ_0171/01/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_5UYQ_0181/01/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_5UYQ_0191/01/641:647No text annotation
Not in a motif group
homologous
HL_5J7L_153
HL_77805.2
HL_5UYQ_0201/01/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_5UYQ_0211/01/744:753No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_5UYQ_0221/01/779:785No text annotation
Not in a motif group
geometric
HL_7A0S_007
HL_02862.2
HL_5UYQ_0231/01/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_5UYQ_0241/01/884:892No text annotation
Not in a motif group
HL_5UYQ_0251/01/955:962No text annotation
Not in a motif group
homologous
HL_7A0S_026
HL_42097.1
HL_5UYQ_0261/01/978:985No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_5UYQ_0271/01/1064:1074No text annotation
Not in a motif group
HL_5UYQ_0281/01/1092:1099No text annotation
Not in a motif group
homologous
HL_7RQB_030
NA
HL_5UYQ_0291/01/1171:1178No text annotation
Not in a motif group
HL_5UYQ_0301/01/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_5UYQ_0311/01/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_5UYQ_0321/01/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_5UYQ_0331/01/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_5UYQ_0341/01/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_5UYQ_0351/01/1451:1459No text annotation
Not in a motif group
homologous
HL_5J7L_169
HL_53837.1
HL_5UYQ_0361/01/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_5UYQ_0371/01/1533:1538No text annotation
Not in a motif group
HL_5UYQ_0381/01/1565:1568No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.2
HL_5UYQ_0391/01/1612:1619No text annotation
Not in a motif group
homologous
HL_4WF9_038
HL_64430.2
HL_5UYQ_0401/01/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_5UYQ_0411/01/1691:1696UNCG
Not in a motif group
homologous
HL_5J7L_175
HL_03562.2
HL_5UYQ_0421/01/1727:1733No text annotation
Not in a motif group
geometric
HL_5TBW_012
HL_86373.2
HL_5UYQ_0431/01/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_76539.2
HL_5UYQ_0441/01/1777:1787No text annotation
Not in a motif group
homologous
HL_7RQB_045
HL_43613.5
HL_5UYQ_0451/01/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_5UYQ_0461/01/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_42097.1
HL_5UYQ_0471/01/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_5UYQ_0481/01/1949:1957No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_5UYQ_0491/01/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_5UYQ_0501/01/2142:2149No text annotation
Not in a motif group
HL_5UYQ_0511/01/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_5UYQ_0521/01/2248:2256No text annotation
Not in a motif group
homologous
HL_7A0S_052
HL_53171.2
HL_5UYQ_0531/01/2264:2276No text annotation
Not in a motif group
homologous
HL_4WF9_050
HL_19870.6
HL_5UYQ_0541/01/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_5UYQ_0551/01/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_5UYQ_0561/01/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_5UYQ_0571/01/2374:2379GNRA
Not in a motif group
homologous
HL_4WF9_054
HL_42097.1
HL_5UYQ_0581/01/2404:2413No text annotation
Not in a motif group
homologous
HL_7A0S_058
HL_30784.2
HL_5UYQ_0591/01/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_5UYQ_0601/01/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_5UYQ_0611/01/2551:2557No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_5UYQ_0621/01/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_5UYQ_0631/01/2658:2663GNRA
Not in a motif group
geometric
HL_4V9F_020
HL_42097.1
HL_5UYQ_0641/01/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_5UYQ_0651/01/2745:2759No text annotation
Not in a motif group
homologous
HL_4WF9_062
HL_56677.7
HL_5UYQ_0661/01/2795:2801Other HL
Not in a motif group
homologous
HL_5J7L_200
HL_34168.2
HL_5UYQ_0671/01/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_5UYQ_0681/01/2856:2861No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_42097.1
HL_5UYQ_0691/02/34:48No text annotation
Not in a motif group
HL_5UYQ_0701/02/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2
HL_5UYQ_0711/A/12:22No text annotation
Not in a motif group
HL_5UYQ_0721/A/78:91No text annotation
Not in a motif group
HL_5UYQ_0731/A/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_5UYQ_0741/A/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_5UYQ_0751/A/206:213No text annotation
Not in a motif group
geometric
HL_4WSB_001
HL_27930.1
HL_5UYQ_0761/A/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_5UYQ_0771/A/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_5UYQ_0781/A/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_5UYQ_0791/A/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_5UYQ_0801/A/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_5UYQ_0811/A/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_5UYQ_0821/A/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_5UYQ_0831/A/522:527No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_5UYQ_0841/A/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_5UYQ_0851/A/689:698No text annotation
Not in a motif group
homologous
HL_6CZR_086
HL_12326.1
HL_5UYQ_0861/A/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_5UYQ_0871/A/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_5UYQ_0881/A/840:846No text annotation
Not in a motif group
HL_5UYQ_0891/A/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_5UYQ_0901/A/897:902GNRA
Not in a motif group
homologous
HL_6CZR_091
HL_42097.1
HL_5UYQ_0911/A/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_5UYQ_0921/A/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_5UYQ_0931/A/1028:1033No text annotation
Not in a motif group
geometric
HL_4V88_198
HL_56691.2
HL_5UYQ_0941/A/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_5UYQ_0951/A/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_5UYQ_0961/A/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_5UYQ_0971/A/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_5UYQ_0981/A/1265:1270GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_42097.1
HL_5UYQ_0991/A/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_5UYQ_1001/A/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_5UYQ_1011/A/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_5UYQ_1021/A/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_5UYQ_1031/W/13:22No text annotation
Not in a motif group
homologous
HL_1QF6_001
NA
HL_5UYQ_1041/W/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4TUE_034
HL_53597.2
HL_5UYQ_1051/W/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_3WQY_003
HL_22280.1
HL_5UYQ_1061/X/13:22No text annotation
Not in a motif group
homologous
HL_6GSL_208
NA
HL_5UYQ_1071/X/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_6UFG_007
HL_53597.2
HL_5UYQ_1081/X/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_6JXM_003
HL_22280.1
HL_5UYQ_1091/Y/13:22No text annotation
Not in a motif group
homologous
HL_6JXM_001
HL_25462.2
HL_5UYQ_1101/Y/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_5IBB_210
HL_53597.2
HL_5UYQ_1111/Y/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5AXM_003
HL_22280.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5UYQ_0011/01/24:30,
1/01/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_4WF9_001
IL_66414.6
IL_5UYQ_0021/01/36:37,
1/01/442:444
Single bulged A
Not in a motif group
homologous
IL_7A0S_002
IL_37497.2
IL_5UYQ_0031/01/43:44,
1/01/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_5UYQ_0041/01/81:85,
1/01/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_5UYQ_0051/01/183:184,
1/01/212:214
Single stack bend
Not in a motif group
homologous
IL_5J7L_249
IL_76488.2
IL_5UYQ_0061/01/188:194,
1/01/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_006
IL_04346.7
IL_5UYQ_0071/01/239:245,
1/01/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_5UYQ_0081/01/269:271,
1/01/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_5UYQ_0091/01/274:282,
1/01/358:363
No text annotation
Not in a motif group
IL_5UYQ_0101/01/293:295,
1/01/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_5UYQ_0111/01/481:484,
1/01/496:509
No text annotation
Not in a motif group
homologous
IL_5J7L_255
IL_60992.6
IL_5UYQ_0121/01/536:539,
1/01/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_5UYQ_0131/01/564:566,
1/01/575:577
No text annotation
Not in a motif group
homologous
IL_5J7L_257
IL_95997.1
IL_5UYQ_0141/01/606:610,
1/01/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_5UYQ_0151/01/672:674,
1/01/806:808
No text annotation
Not in a motif group
homologous
IL_7RQB_017
IL_95997.1
IL_5UYQ_0161/01/674:678,
1/01/799:806
No text annotation
Not in a motif group
geometric
IL_7RQB_018
IL_17470.6
IL_5UYQ_0171/01/697:698,
1/01/763:765
Single bulged A
Not in a motif group
homologous
IL_5J7L_261
IL_37497.2
IL_5UYQ_0181/01/702:703,
1/01/728:730
Single bulged G
Not in a motif group
homologous
IL_5J7L_262
IL_00225.2
IL_5UYQ_0191/01/703:707,
1/01/724:728
Triple sheared
Not in a motif group
geometric
IL_4V9F_027
IL_56467.8
IL_5UYQ_0201/01/738:740,
1/01/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.1
IL_5UYQ_0211/01/775:777,
1/01/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_265
IL_90991.6
IL_5UYQ_0221/01/844:847,
1/01/933:934
Other IL
Not in a motif group
geometric
IL_5J7L_267
IL_92001.1
IL_5UYQ_0231/01/847:848,
1/01/930:933
Stack outside cWW
Not in a motif group
homologous
IL_5J7L_268
IL_37629.1
IL_5UYQ_0241/01/850:851,
1/01/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_5UYQ_0251/01/856:862,
1/01/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_5J7L_270
IL_93830.3
IL_5UYQ_0261/01/862:863,
1/01/913:915
Single bulged G
Not in a motif group
geometric
IL_5J7L_271
IL_00225.2
IL_5UYQ_0271/01/864:868,
1/01/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_5UYQ_0281/01/870:872,
1/01/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_5UYQ_0291/01/875:879,
1/01/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_5UYQ_0301/01/880:881,
1/01/895:897
No text annotation
Not in a motif group
homologous
IL_5J7L_275
NA
IL_5UYQ_0311/01/994:996,
1/01/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_5UYQ_0321/01/998:1002,
1/01/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_5J7L_277
IL_89002.2
IL_5UYQ_0331/01/1004:1011,
1/01/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_4WF9_037
IL_15861.7
IL_5UYQ_0341/01/1011:1013,
1/01/1149:1150
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.13
IL_5UYQ_0351/01/1018:1024,
1/01/1140:1144
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_5UYQ_0361/01/1024:1030,
1/01/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_5UYQ_0371/01/1031:1034,
1/01/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_041
IL_82068.2
IL_5UYQ_0381/01/1038:1041,
1/01/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_5UYQ_0391/01/1043:1051,
1/01/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_5UYQ_0401/01/1059:1062,
1/01/1076:1079
No text annotation
Not in a motif group
homologous
IL_5J7L_285
IL_23544.2
IL_5UYQ_0411/01/1087:1090,
1/01/1101:1102
Major groove platform
Not in a motif group
geometric
IL_4V9F_044
IL_27635.1
IL_5UYQ_0421/01/1196:1198,
1/01/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_5J7L_286
IL_52767.2
IL_5UYQ_0431/01/1202:1206,
1/01/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_5UYQ_0441/01/1208:1215,
1/01/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_5UYQ_0451/01/1262:1269,
1/01/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_5UYQ_0461/01/1310:1313,
1/01/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4WF9_049
IL_50694.2
IL_5UYQ_0471/01/1319:1323,
1/01/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_5UYQ_0481/01/1351:1355,
1/01/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_5UYQ_0491/01/1357:1361,
1/01/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_4WF9_052
IL_17136.1
IL_5UYQ_0501/01/1415:1416,
1/01/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_5UYQ_0511/01/1417:1421,
1/01/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_5UYQ_0521/01/1432:1435,
1/01/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_5UYQ_0531/01/1437:1440,
1/01/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_5UYQ_0541/01/1450:1451,
1/01/1459:1461
Single bulged U
Not in a motif group
geometric
IL_5J7L_298
IL_83039.13
IL_5UYQ_0551/01/1468:1471,
1/01/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_5UYQ_0561/01/1473:1478,
1/01/1513:1518
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7A0S_027
IL_81631.1
IL_5UYQ_0571/01/1481:1482,
1/01/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_5UYQ_0581/01/1489:1491,
1/01/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_5UYQ_0591/01/1526:1529,
1/01/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_5UYQ_0601/01/1651:1656,
1/01/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_5UYQ_0611/01/1663:1665,
1/01/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_5UYQ_0621/01/1666:1669,
1/01/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_50694.2
IL_5UYQ_0631/01/1669:1674,
1/01/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_5J7L_307
IL_82842.2
IL_5UYQ_0641/01/1686:1691,
1/01/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_5J7L_308
IL_65969.2
IL_5UYQ_0651/01/1712:1718,
1/01/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_5UYQ_0661/01/1720:1725,
1/01/1735:1740
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_7A0S_018
IL_86929.2
IL_5UYQ_0671/01/1770:1771,
1/01/1980:1982
Single bulged A
Not in a motif group
homologous
IL_5J7L_312
IL_37497.2
IL_5UYQ_0681/01/1798:1804,
1/01/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_5UYQ_0691/01/1837:1840,
1/01/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7A0S_066
IL_88739.1
IL_5UYQ_0701/01/1841:1842,
1/01/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_5UYQ_0711/01/1846:1849,
1/01/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.6
IL_5UYQ_0721/01/1864:1867,
1/01/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_5UYQ_0731/01/1933:1934,
1/01/1964:1967
No text annotation
Not in a motif group
homologous
IL_4WF9_076
IL_59677.2
IL_5UYQ_0741/01/1934:1945,
1/01/1961:1964
No text annotation
Not in a motif group
geometric
IL_4WF9_077
IL_81589.2
IL_5UYQ_0751/01/2050:2052,
1/01/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.1
IL_5UYQ_0761/01/2054:2056,
1/01/2612:2615
No text annotation
Not in a motif group
homologous
IL_5J7L_321
IL_54678.5
IL_5UYQ_0771/01/2067:2069,
1/01/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7A0S_075
IL_83039.13
IL_5UYQ_0781/01/2070:2071,
1/01/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_5UYQ_0791/01/2081:2083,
1/01/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_5UYQ_0801/01/2085:2087,
1/01/2232:2234
No text annotation
Not in a motif group
homologous
IL_7A0S_078
IL_95997.1
IL_5UYQ_0811/01/2103:2105,
1/01/2184:2186
No text annotation
Not in a motif group
geometric
IL_4V88_465
IL_95997.1
IL_5UYQ_0821/01/2105:2110,
1/01/2179:2184
Tandem non-canonical cWW pairs with near WC pairs
Not in a motif group
geometric
IL_4EYA_005
IL_04668.1
IL_5UYQ_0831/01/2110:2121,
1/01/2177:2179
No text annotation
Not in a motif group
IL_5UYQ_0841/01/2202:2204,
1/01/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_5UYQ_0851/01/2350:2353,
1/01/2364:2367
Double sheared
Not in a motif group
homologous
IL_4WF9_087
IL_09705.9
IL_5UYQ_0861/01/2401:2403,
1/01/2414:2415
No text annotation
Not in a motif group
IL_5UYQ_0871/01/2453:2454,
1/01/2498:2500
Single stack bend
Not in a motif group
geometric
IL_4WF9_089
IL_76488.2
IL_5UYQ_0881/01/2454:2455,
1/01/2496:2498
Major groove platform
Not in a motif group
homologous
IL_7RQB_092
IL_27635.1
IL_5UYQ_0891/01/2457:2459,
1/01/2493:2494
Major groove platform
Not in a motif group
homologous
IL_7A0S_085
IL_27635.1
IL_5UYQ_0901/01/2459:2461,
1/01/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_5J7L_337
IL_92788.2
IL_5UYQ_0911/01/2466:2470,
1/01/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_5UYQ_0921/01/2507:2508,
1/01/2580:2582
Major groove platform
Not in a motif group
homologous
IL_4WF9_094
IL_76223.2
IL_5UYQ_0931/01/2510:2512,
1/01/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_340
IL_90933.2
IL_5UYQ_0941/01/2512:2513,
1/01/2571:2574
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_5UYQ_0951/01/2522:2523,
1/01/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_5UYQ_0961/01/2591:2592,
1/01/2601:2603
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.2
IL_5UYQ_0971/01/2636:2640,
1/01/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_5UYQ_0981/01/2652:2658,
1/01/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7A0S_094
IL_16458.1
IL_5UYQ_0991/01/2680:2684,
1/01/2725:2727
C-loop
Not in a motif group
homologous
IL_7RQB_104
IL_63596.6
IL_5UYQ_1001/01/2687:2691,
1/01/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_5UYQ_1011/01/2695:2696,
1/01/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_5UYQ_1021/01/2737:2742,
1/01/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_5UYQ_1031/01/2806:2811,
1/01/2889:2892
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_49460.2
IL_5UYQ_1041/01/2838:2839,
1/01/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_16396.2
IL_5UYQ_1051/01/2843:2846,
1/01/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_5UYQ_1061/01/2847:2852,
1/01/2865:2869
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.5
IL_5UYQ_1071/02/17:18,
1/02/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.2
IL_5UYQ_1081/02/23:28,
1/02/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_5UYQ_1091/02/30:31,
1/02/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_357
IL_09061.6
IL_5UYQ_1101/02/71:79,
1/02/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3
IL_5UYQ_1111/A/30:32,
1/A/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.2
IL_5UYQ_1121/A/44:45,
1/A/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_5UYQ_1131/A/47:52,
1/A/359:361
No text annotation
Not in a motif group
geometric
IL_5J7L_003
IL_11178.1
IL_5UYQ_1141/A/54:56,
1/A/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_5UYQ_1151/A/63:66,
1/A/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_6CZR_117
IL_76389.1
IL_5UYQ_1161/A/67:69,
1/A/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_5UYQ_1171/A/70:73,
1/A/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_5UYQ_1181/A/75:76,
1/A/93:95
Major groove intercalation
Not in a motif group
geometric
IL_5J7L_352
IL_16396.2
IL_5UYQ_1191/A/128:131,
1/A/231:233
No text annotation
Not in a motif group
IL_5UYQ_1201/A/132:136,
1/A/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_5UYQ_1211/A/144:146,
1/A/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_5UYQ_1221/A/147:153,
1/A/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_5UYQ_1231/A/203:206,
1/A/213:214
Minor groove platform
Not in a motif group
geometric
IL_3MXH_005
IL_15052.1
IL_5UYQ_1241/A/242:247,
1/A/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_5UYQ_1251/A/249:252,
1/A/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_5UYQ_1261/A/292:293,
1/A/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_5UYQ_1271/A/367:369,
1/A/392:393
Single bulged U
Not in a motif group
homologous
IL_4LFB_014
IL_83039.13
IL_5UYQ_1281/A/371:375,
1/A/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_5UYQ_1291/A/375:376,
1/A/387:389
Single bulged G
Not in a motif group
geometric
IL_4LFB_016
IL_00225.2
IL_5UYQ_1301/A/409:416,
1/A/427:433
No text annotation
Not in a motif group
homologous
IL_5J7L_020
IL_28026.1
IL_5UYQ_1311/A/440:442,
1/A/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_5UYQ_1321/A/446:450,
1/A/483:488
tSH-tHW-tWW
Not in a motif group
geometric
IL_5J7L_022
IL_88269.3
IL_5UYQ_1331/A/450:455,
1/A/477:483
No text annotation
Not in a motif group
homologous
IL_5J7L_023
IL_70801.1
IL_5UYQ_1341/A/504:511,
1/A/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_5UYQ_1351/A/515:521,
1/A/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_5UYQ_1361/A/569:575,
1/A/880:881
No text annotation
Not in a motif group
homologous
IL_5J7L_026
IL_69996.1
IL_5UYQ_1371/A/580:584,
1/A/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_5UYQ_1381/A/594:596,
1/A/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_5UYQ_1391/A/597:598,
1/A/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_5UYQ_1401/A/605:612,
1/A/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_5UYQ_1411/A/654:655,
1/A/751:754
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_5UYQ_1421/A/659:660,
1/A/745:747
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_5UYQ_1431/A/662:667,
1/A/739:743
No text annotation
Not in a motif group
IL_5UYQ_1441/A/673:678,
1/A/712:717
No text annotation
Not in a motif group
geometric
IL_5J7L_034
IL_04668.1
IL_5UYQ_1451/A/684:688,
1/A/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_5UYQ_1461/A/774:778,
1/A/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_5UYQ_1471/A/779:783,
1/A/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_5UYQ_1481/A/887:894,
1/A/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_5UYQ_1491/A/922:923,
1/A/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.2
IL_5UYQ_1501/A/925:927,
1/A/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_5UYQ_1511/A/933:935,
1/A/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_5UYQ_1521/A/953:954,
1/A/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_5UYQ_1531/A/993:997,
1/A/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_5J7L_043
IL_47078.1
IL_5UYQ_1541/A/998:999,
1/A/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_5UYQ_1551/A/1048:1050,
1/A/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_5UYQ_1561/A/1051:1056,
1/A/1204:1207
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5EW4_001
IL_30621.2
IL_5UYQ_1571/A/1057:1058,
1/A/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_5UYQ_1581/A/1060:1061,
1/A/1195:1197
Single bulged A
Not in a motif group
geometric
IL_5J7L_049
IL_37497.2
IL_5UYQ_1591/A/1061:1063,
1/A/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_95997.1
IL_5UYQ_1601/A/1124:1128,
1/A/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_5UYQ_1611/A/1129:1132,
1/A/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_5UYQ_1621/A/1158:1161,
1/A/1175:1181
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_5UYQ_1631/A/1247:1253,
1/A/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_5UYQ_1641/A/1255:1258,
1/A/1277:1282
No text annotation
Not in a motif group
homologous
IL_5J7L_055
IL_75461.4
IL_5UYQ_1651/A/1259:1263,
1/A/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_5UYQ_1661/A/1303:1308,
1/A/1329:1334
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_5UYQ_1671/A/1399:1401,
1/A/1501:1504
No text annotation
Not in a motif group
homologous
IL_6CZR_165
NA
IL_5UYQ_1681/A/1401:1404,
1/A/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_5UYQ_1691/A/1405:1407,
1/A/1494:1496
No text annotation
Not in a motif group
geometric
IL_5MWI_007
IL_95997.1
IL_5UYQ_1701/A/1407:1409,
1/A/1491:1494
Decoding loop related
Not in a motif group
geometric
IL_2O3X_003
IL_82842.2
IL_5UYQ_1711/A/1412:1414,
1/A/1486:1488
No text annotation
Not in a motif group
homologous
IL_4LFB_059
IL_95997.1
IL_5UYQ_1721/A/1416:1419,
1/A/1481:1484
Double sheared
Not in a motif group
homologous
IL_6CZR_169
IL_09705.9
IL_5UYQ_1731/A/1430:1435,
1/A/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_5UYQ_1741/A/1440:1442,
1/A/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_5UYQ_1751/A/1445:1448,
1/A/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5UYQ_0011/01/30:31,
1/01/474:481,
1/01/509:510
No text annotation
Not in a motif group
J3_5UYQ_0021/01/56:57,
1/01/70:76,
1/01/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_5UYQ_0031/01/683:689,
1/01/773:775,
1/01/791:794
No text annotation
Not in a motif group
J3_5UYQ_0041/01/698:700,
1/01/732:736,
1/01/760:763
No text annotation
Not in a motif group
J3_5UYQ_0051/01/1055:1058,
1/01/1080:1087,
1/01/1102:1104
No text annotation
Not in a motif group
J3_5UYQ_0061/01/1298:1303,
1/01/1625:1627,
1/01/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_5UYQ_0071/01/1306:1309,
1/01/1605:1611,
1/01/1620:1622
No text annotation
Not in a motif group
homologous
J3_5J7L_042
NA
J3_5UYQ_0081/01/1344:1349,
1/01/1382:1385,
1/01/1402:1403
No text annotation
Not in a motif group
homologous
J3_5J7L_043
NA
J3_5UYQ_0091/01/2091:2093,
1/01/2196:2200,
1/01/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_5UYQ_0101/01/2295:2299,
1/01/2317:2323,
1/01/2332:2337
No text annotation
Not in a motif group
J3_5UYQ_0111/01/2517:2520,
1/01/2545:2547,
1/01/2561:2567
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_5UYQ_0121/01/2789:2791,
1/01/2805:2806,
1/01/2892:2894
No text annotation
Not in a motif group
J3_5UYQ_0131/01/2812:2815,
1/01/2831:2836,
1/01/2882:2888
No text annotation
Not in a motif group
homologous
J3_5J7L_048
NA
J3_5UYQ_0141/02/10:16,
1/02/68:70,
1/02/106:110
No text annotation
Not in a motif group
J3_5UYQ_0151/A/46:47,
1/A/361:367,
1/A/393:395
No text annotation
Not in a motif group
J3_5UYQ_0161/A/586:588,
1/A/651:654,
1/A/754:755
No text annotation
Not in a motif group
J3_5UYQ_0171/A/672:673,
1/A/717:725,
1/A/732:734
No text annotation
Not in a motif group
homologous
J3_5J7L_003
NA
J3_5UYQ_0181/A/826:829,
1/A/857:861,
1/A/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_5UYQ_0191/A/936:939,
1/A/1344:1350,
1/A/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_5UYQ_0201/A/943:946,
1/A/1235:1237,
1/A/1337:1340
No text annotation
Not in a motif group
J3_5UYQ_0211/A/955:962,
1/A/973:984,
1/A/1221:1225
No text annotation
Not in a motif group
J3_5UYQ_0221/A/990:993,
1/A/1045:1047,
1/A/1210:1215
No text annotation
Not in a motif group
J3_5UYQ_0231/A/1003:1006,
1/A/1023:1028,
1/A/1033:1037
No text annotation
Not in a motif group
J3_5UYQ_0241/A/1063:1068,
1/A/1107:1113,
1/A/1187:1193
No text annotation
Not in a motif group
J3_5UYQ_0251/A/1073:1074,
1/A/1083:1087,
1/A/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_5UYQ_0261/A/1116:1118,
1/A/1155:1158,
1/A/1181:1184
No text annotation
Not in a motif group
homologous
J3_5J7L_010
NA
J3_5UYQ_0271/A/1237:1241,
1/A/1296:1303,
1/A/1334:1337
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA

Problematic loops

No problematic loops


Coloring options:
Copyright 2024 BGSU RNA group. Page generated in 0.1995 s