6RM3 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6RM3_001 | 1/L50/48:57 | tRNA anticodon loop | geometric HL_6JXM_002 HL_97725.1 | |
| HL_6RM3_002 | 1/L50/117:124 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_6RM3_003 | 1/L50/148:153 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6RM3_004 | 1/L50/169:175 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_6RM3_005 | 1/L50/205:212 | No text annotation | geometric HL_4V88_215 NA | |
| HL_6RM3_007 | 1/L50/304:313 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_6RM3_008 | 1/L50/330:339 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_6RM3_009 | 1/L50/383:388 | GNRA | homologous HL_5TBW_010 NA | |
| HL_6RM3_010 | 1/L50/421:426 | Mini UNCG | geometric HL_1ZBH_001 HL_12626.2 | |
| HL_6RM3_011 | 1/L50/436:445 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_6RM3_013 | 1/L50/500:507 | GNRA wlth tandem sheared | geometric HL_1E8O_001 NA | |
| HL_6RM3_015 | 1/L50/602:611 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_6RM3_016 | 1/L50/636:644 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6RM3_017 | 1/L50/684:689 | No text annotation | geometric HL_7RQB_025 NA | |
| HL_6RM3_018 | 1/L50/781:788 | T-loop related | geometric HL_3R4F_001 HL_63894.2 | |
| HL_6RM3_019 | 1/L50/828:834 | GNRA | homologous HL_5TBW_025 NA | |
| HL_6RM3_020 | 1/L50/850:857 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6RM3_022 | 1/L50/1085:1090 | GNRA | homologous HL_5TBW_030 NA | |
| HL_6RM3_026 | 1/L50/1212:1221 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_6RM3_027 | 1/L50/1241:1246 | GNRA | geometric HL_5TBW_036 NA | |
| HL_6RM3_028 | 1/L50/1278:1289 | No text annotation | ||
| HL_6RM3_029 | 1/L50/1313:1319 | No text annotation | geometric HL_4WF9_066 HL_59381.2 | |
| HL_6RM3_030 | 1/L50/1346:1350 | Mini UNCG | geometric HL_4V9F_041 HL_90436.3 | |
| HL_6RM3_031 | 1/L50/1381:1388 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6RM3_032 | 1/L50/1398:1405 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_6RM3_033 | 1/L50/1458:1463 | UNCG | geometric HL_4LFB_009 HL_61337.4 | |
| HL_6RM3_034 | 1/L50/1482:1485 | No text annotation | geometric HL_7RQB_009 NA | |
| HL_6RM3_035 | 1/L50/1494:1497 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6RM3_036 | 1/L50/1518:1528 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_6RM3_037 | 1/L50/1539:1548 | Mini UNCG | geometric HL_4OOG_001 HL_12626.2 | |
| HL_6RM3_038 | 1/L50/1579:1593 | No text annotation | ||
| HL_6RM3_088 | 1/L50/1652:1658 | No text annotation | geometric HL_8VTW_051 NA | |
| HL_6RM3_041 | 1/L50/1729:1738 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_6RM3_042 | 1/L50/1891:1899 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_6RM3_043 | 1/L50/1908:1920 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_6RM3_044 | 1/L50/1948:1956 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6RM3_045 | 1/L50/1968:1975 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6RM3_046 | 1/L50/1999:2006 | No text annotation | ||
| HL_6RM3_047 | 1/L50/2018:2023 | GNRA | homologous HL_8C3A_060 NA | |
| HL_6RM3_048 | 1/L50/2047:2055 | Pseudoknot geometry | homologous HL_5TBW_060 NA | |
| HL_6RM3_049 | 1/L50/2109:2117 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_6RM3_050 | 1/L50/2166:2173 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6RM3_051 | 1/L50/2189:2195 | No text annotation | homologous HL_8C3A_064 NA | |
| HL_6RM3_052 | 1/L50/2232:2237 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6RM3_053 | 1/L50/2289:2294 | GNRA | homologous HL_8C3A_066 NA | |
| HL_6RM3_054 | 1/L50/2331:2336 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6RM3_055 | 1/L50/2371:2386 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6RM3_056 | 1/L50/2418:2426 | No text annotation | geometric HL_4V9F_069 HL_37889.1 | |
| HL_6RM3_057 | 1/L50/2456:2461 | No text annotation | geometric HL_4UYK_003 HL_51020.2 | |
| HL_6RM3_058 | 1/L70/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_6RM3_059 | 1/L70/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6RM3_060 | 1/S60/6:16 | No text annotation | ||
| HL_6RM3_061 | 1/S60/60:69 | No text annotation | ||
| HL_6RM3_062 | 1/S60/125:134 | No text annotation | ||
| HL_6RM3_063 | 1/S60/184:192 | No text annotation | ||
| HL_6RM3_064 | 1/S60/223:227 | No text annotation | ||
| HL_6RM3_065 | 1/S60/247:258 | No text annotation | ||
| HL_6RM3_066 | 1/S60/268:273 | No text annotation | ||
| HL_6RM3_067 | 1/S60/304:310 | No text annotation | ||
| HL_6RM3_068 | 1/S60/350:360 | No text annotation | ||
| HL_6RM3_069 | 1/S60/398:403 | No text annotation | ||
| HL_6RM3_070 | 1/S60/506:517 | No text annotation | ||
| HL_6RM3_071 | 1/S60/544:549 | No text annotation | ||
| HL_6RM3_072 | 1/S60/604:614 | No text annotation | ||
| HL_6RM3_073 | 1/S60/657:662 | No text annotation | ||
| HL_6RM3_074 | 1/S60/677:682 | No text annotation | ||
| HL_6RM3_075 | 1/S60/714:719 | No text annotation | ||
| HL_6RM3_076 | 1/S60/781:790 | No text annotation | ||
| HL_6RM3_077 | 1/S60/877:882 | No text annotation | ||
| HL_6RM3_078 | 1/S60/889:896 | No text annotation | ||
| HL_6RM3_080 | 1/S60/934:940 | No text annotation | ||
| HL_6RM3_081 | 1/S60/1013:1021 | No text annotation | ||
| HL_6RM3_082 | 1/S60/1039:1046 | No text annotation | ||
| HL_6RM3_083 | 1/S60/1080:1088 | No text annotation | ||
| HL_6RM3_084 | 1/S60/1163:1168 | No text annotation | ||
| HL_6RM3_085 | 1/S60/1223:1228 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6RM3_006 | No text annotation | ||
| HL_6RM3_086 | No text annotation | ||
| HL_6RM3_012 | Externally structured | ||
| HL_6RM3_014 | No text annotation | ||
| HL_6RM3_021 | Mini UNCG | ||
| HL_6RM3_023 | Mini UNCG | ||
| HL_6RM3_024 | No text annotation | ||
| HL_6RM3_025 | No text annotation | ||
| HL_6RM3_087 | No text annotation | ||
| HL_6RM3_039 | No text annotation | ||
| HL_6RM3_040 | No text annotation | ||
| HL_6RM3_089 | No text annotation | ||
| HL_6RM3_090 | No text annotation | ||
| HL_6RM3_091 | No text annotation | ||
| HL_6RM3_079 | No text annotation | ||
| HL_6RM3_092 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6RM3_001 | 1/L50/6:7, 1/L50/409:411 | Single stack bend | geometric IL_7A0S_054 IL_15011.3 | |
| IL_6RM3_002 | 1/L50/14:20, 1/L50/396:402 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 NA | |
| IL_6RM3_003 | 1/L50/26:27, 1/L50/363:365 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6RM3_004 | 1/L50/32:34, 1/L50/355:358 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_6RM3_006 | 1/L50/106:107, 1/L50/135:137 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6RM3_007 | 1/L50/110:117, 1/L50/124:132 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_6RM3_008 | 1/L50/161:168, 1/L50/176:182 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_6RM3_009 | 1/L50/202:203, 1/L50/214:219 | No text annotation | geometric IL_4V9F_009 IL_10396.1 | |
| IL_6RM3_141 | 1/L50/471:474, 1/L50/496:513 | No text annotation | ||
| IL_6RM3_011 | 1/L50/529:531, 1/L50/664:666 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_6RM3_012 | 1/L50/531:535, 1/L50/657:664 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_6RM3_013 | 1/L50/559:564, 1/L50/581:587 | Quadruple sheared | geometric IL_3FTF_001 IL_29495.1 | |
| IL_6RM3_014 | 1/L50/595:598, 1/L50/614:616 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6RM3_015 | 1/L50/599:601, 1/L50/612:613 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6RM3_016 | 1/L50/633:635, 1/L50/645:649 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_6RM3_017 | 1/L50/695:696, 1/L50/813:815 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_6RM3_018 | 1/L50/701:708, 1/L50/804:808 | No text annotation | ||
| IL_6RM3_019 | 1/L50/710:712, 1/L50/801:802 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6RM3_020 | 1/L50/719:724, 1/L50/759:764 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_6RM3_021 | 1/L50/724:725, 1/L50/757:759 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_6RM3_022 | 1/L50/726:730, 1/L50/753:756 | C-loop | geometric IL_4V88_443 NA | |
| IL_6RM3_023 | 1/L50/730:734, 1/L50/749:753 | No text annotation | homologous IL_8C3A_044 NA | |
| IL_6RM3_024 | 1/L50/779:781, 1/L50/788:789 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_6RM3_025 | 1/L50/824:826, 1/L50/836:838 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_6RM3_026 | 1/L50/869:873, 1/L50/1026:1030 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_6RM3_027 | 1/L50/875:882, 1/L50/1023:1024 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_6RM3_028 | 1/L50/882:884, 1/L50/1022:1023 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_6RM3_144 | 1/L50/882:885, 1/L50/1020:1023 | No text annotation | ||
| IL_6RM3_029 | 1/L50/884:885, 1/L50/1020:1022 | Single stack bend | geometric IL_4WF9_007 IL_15011.3 | |
| IL_6RM3_030 | 1/L50/888:904, 1/L50/998:1017 | No text annotation | ||
| IL_6RM3_031 | 1/L50/909:911, 1/L50/992:993 | Single bulged G | geometric IL_4LVW_002 IL_28408.2 | |
| IL_6RM3_032 | 1/L50/1060:1062, 1/L50/1110:1113 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_6RM3_033 | 1/L50/1069:1071, 1/L50/1101:1103 | Isolated near basepair | geometric IL_3NJ7_004 IL_42997.5 | |
| IL_6RM3_034 | 1/L50/1071:1078, 1/L50/1097:1101 | Kink-turn | geometric IL_3V7E_002 NA | |
| IL_6RM3_035 | 1/L50/1126:1132, 1/L50/1713:1718 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6RM3_036 | 1/L50/1160:1163, 1/L50/1373:1374 | Major groove platform; stack outside cWW | geometric IL_5J7L_290 NA | |
| IL_6RM3_037 | 1/L50/1229:1230, 1/L50/1364:1366 | Single bulged U | geometric IL_4FRG_002 IL_97561.5 | |
| IL_6RM3_146 | 1/L50/1308:1312, 1/L50/1320:1327 | Kink-turn | geometric IL_7EAG_005 NA | |
| IL_6RM3_039 | 1/L50/1430:1432, 1/L50/1697:1699 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6RM3_040 | 1/L50/1433:1436, 1/L50/1695:1696 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_74641.2 | |
| IL_6RM3_147 | 1/L50/1433:1441, 1/L50/1692:1696 | No text annotation | homologous IL_8P9A_305 IL_80252.1 | |
| IL_6RM3_041 | 1/L50/1436:1441, 1/L50/1692:1695 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_6RM3_042 | 1/L50/1453:1458, 1/L50/1463:1469 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_6RM3_043 | 1/L50/1475:1477, 1/L50/1490:1492 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6RM3_148 | 1/L50/1511:1512, 1/L50/1682:1684 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6RM3_045 | 1/L50/1564:1567, 1/L50/1604:1605 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6RM3_046 | 1/L50/1568:1569, 1/L50/1600:1603 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6RM3_047 | 1/L50/1635:1636, 1/L50/1666:1669 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_6RM3_048 | 1/L50/1636:1647, 1/L50/1663:1666 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_6RM3_049 | 1/L50/1752:1755, 1/L50/2255:2257 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_6RM3_050 | 1/L50/1757:1759, 1/L50/2250:2253 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6RM3_051 | 1/L50/1770:1772, 1/L50/2080:2081 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6RM3_052 | 1/L50/1773:1774, 1/L50/2076:2079 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6RM3_053 | 1/L50/1784:1786, 1/L50/1879:1882 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6RM3_149 | 1/L50/1793:1795, 1/L50/1866:1872 | No text annotation | ||
| IL_6RM3_055 | 1/L50/1889:1890, 1/L50/1900:1902 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6RM3_056 | 1/L50/1941:1943, 1/L50/1961:1965 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_6RM3_057 | 1/L50/1992:1995, 1/L50/2010:2013 | Tandem non-canonical cWW pairs | geometric IL_6MWN_005 IL_71194.2 | |
| IL_6RM3_058 | 1/L50/2043:2045, 1/L50/2057:2058 | Single stack bend | geometric IL_7A0S_054 IL_15011.3 | |
| IL_6RM3_059 | 1/L50/2092:2095, 1/L50/2132:2136 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_6RM3_060 | 1/L50/2095:2097, 1/L50/2131:2132 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_6RM3_061 | 1/L50/2097:2099, 1/L50/2127:2131 | Major groove minor groove platform with extra cWW | geometric IL_4V9F_084 IL_36931.2 | |
| IL_6RM3_062 | 1/L50/2104:2108, 1/L50/2118:2122 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6RM3_063 | 1/L50/2145:2146, 1/L50/2218:2220 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6RM3_064 | 1/L50/2148:2150, 1/L50/2212:2216 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_6RM3_065 | 1/L50/2150:2151, 1/L50/2209:2212 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_6RM3_066 | 1/L50/2160:2161, 1/L50/2178:2181 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_6RM3_067 | 1/L50/2187:2189, 1/L50/2195:2197 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_6RM3_068 | 1/L50/2229:2230, 1/L50/2239:2241 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_6RM3_069 | 1/L50/2280:2282, 1/L50/2300:2302 | Isolated non-canonical cWW pair | geometric IL_4E48_003 IL_01003.4 | |
| IL_6RM3_070 | 1/L50/2283:2289, 1/L50/2294:2299 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_4V9F_092 IL_02666.1 | |
| IL_6RM3_071 | 1/L50/2311:2315, 1/L50/2353:2355 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_6RM3_072 | 1/L50/2318:2322, 1/L50/2346:2350 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6RM3_073 | 1/L50/2326:2327, 1/L50/2340:2342 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6RM3_074 | 1/L50/2363:2368, 1/L50/2389:2394 | UAA/GAN with extra cWW | geometric IL_7RQB_107 NA | |
| IL_6RM3_075 | 1/L50/2438:2439, 1/L50/2477:2479 | Single bulged A | geometric IL_5WWT_001 IL_14190.2 | |
| IL_6RM3_076 | 1/L50/2442:2447, 1/L50/2470:2474 | tHS double platform | geometric IL_4V9F_099 IL_48489.1 | |
| IL_6RM3_077 | 1/L50/2451:2454, 1/L50/2463:2466 | Double sheared | geometric IL_4V9F_100 IL_58355.2 | |
| IL_6RM3_078 | 1/L70/15:16, 1/L70/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6RM3_079 | 1/L70/20:27, 1/L70/52:58 | No text annotation | ||
| IL_6RM3_162 | 1/L70/28:29, 1/L70/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_6RM3_081 | 1/L70/32:36, 1/L70/41:45 | Symmetric double minor groove platform | geometric IL_5NS3_002 IL_58103.12 | |
| IL_6RM3_151 | 1/L70/72:78, 1/L70/98:103 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_4V9F_106 IL_02666.1 | |
| IL_6RM3_083 | 1/L70/82:85, 1/L70/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6RM3_084 | 1/S60/24:26, 1/S60/427:429 | No text annotation | ||
| IL_6RM3_085 | 1/S60/36:38, 1/S60/321:324 | No text annotation | ||
| IL_6RM3_086 | 1/S60/40:46, 1/S60/285:287 | No text annotation | ||
| IL_6RM3_087 | 1/S60/48:50, 1/S60/282:283 | No text annotation | ||
| IL_6RM3_088 | 1/S60/57:59, 1/S60/70:71 | No text annotation | ||
| IL_6RM3_089 | 1/S60/96:99, 1/S60/156:157 | No text annotation | ||
| IL_6RM3_090 | 1/S60/100:104, 1/S60/152:155 | No text annotation | ||
| IL_6RM3_092 | 1/S60/117:122, 1/S60/137:144 | No text annotation | ||
| IL_6RM3_093 | 1/S60/167:172, 1/S60/202:209 | No text annotation | ||
| IL_6RM3_094 | 1/S60/174:177, 1/S60/199:200 | No text annotation | ||
| IL_6RM3_095 | 1/S60/217:220, 1/S60/230:235 | No text annotation | ||
| IL_6RM3_096 | 1/S60/243:245, 1/S60/260:262 | No text annotation | ||
| IL_6RM3_097 | 1/S60/293:295, 1/S60/317:318 | No text annotation | ||
| IL_6RM3_098 | 1/S60/295:297, 1/S60/315:317 | No text annotation | ||
| IL_6RM3_099 | 1/S60/297:301, 1/S60/314:315 | No text annotation | ||
| IL_6RM3_100 | 1/S60/301:302, 1/S60/312:314 | No text annotation | ||
| IL_6RM3_101 | 1/S60/343:346, 1/S60/364:373 | No text annotation | ||
| IL_6RM3_102 | 1/S60/379:386, 1/S60/416:417 | No text annotation | ||
| IL_6RM3_154 | 1/S60/379:388, 1/S60/415:417 | No text annotation | ||
| IL_6RM3_103 | 1/S60/386:388, 1/S60/415:416 | No text annotation | ||
| IL_6RM3_104 | 1/S60/391:397, 1/S60/404:412 | No text annotation | ||
| IL_6RM3_105 | 1/S60/456:462, 1/S60/573:579 | No text annotation | ||
| IL_6RM3_155 | 1/S60/456:471, 1/S60/572:579 | No text annotation | ||
| IL_6RM3_156 | 1/S60/456:472, 1/S60/569:579 | No text annotation | ||
| IL_6RM3_106 | 1/S60/462:471, 1/S60/572:573 | No text annotation | ||
| IL_6RM3_107 | 1/S60/471:472, 1/S60/569:572 | No text annotation | ||
| IL_6RM3_108 | 1/S60/474:476, 1/S60/564:567 | No text annotation | ||
| IL_6RM3_109 | 1/S60/477:484, 1/S60/558:563 | No text annotation | ||
| IL_6RM3_157 | 1/S60/492:495, 1/S60/531:534 | No text annotation | ||
| IL_6RM3_158 | 1/S60/501:506, 1/S60/517:525 | No text annotation | ||
| IL_6RM3_111 | 1/S60/502:506, 1/S60/517:524 | No text annotation | ||
| IL_6RM3_112 | 1/S60/592:596, 1/S60/622:623 | No text annotation | ||
| IL_6RM3_113 | 1/S60/597:601, 1/S60/617:621 | No text annotation | ||
| IL_6RM3_114 | 1/S60/641:643, 1/S60/688:694 | No text annotation | ||
| IL_6RM3_115 | 1/S60/647:649, 1/S60/670:672 | No text annotation | ||
| IL_6RM3_116 | 1/S60/703:711, 1/S60/722:728 | No text annotation | ||
| IL_6RM3_159 | 1/S60/739:740, 1/S60/1116:1118 | No text annotation | ||
| IL_6RM3_118 | 1/S60/742:744, 1/S60/1113:1114 | No text annotation | ||
| IL_6RM3_119 | 1/S60/750:753, 1/S60/1103:1107 | No text annotation | ||
| IL_6RM3_120 | 1/S60/757:759, 1/S60/1065:1067 | No text annotation | ||
| IL_6RM3_121 | 1/S60/771:772, 1/S60/996:998 | No text annotation | ||
| IL_6RM3_122 | 1/S60/805:807, 1/S60/986:988 | No text annotation | ||
| IL_6RM3_124 | 1/S60/849:851, 1/S60/977:978 | No text annotation | ||
| IL_6RM3_125 | 1/S60/853:857, 1/S60/973:975 | No text annotation | ||
| IL_6RM3_160 | 1/S60/853:859, 1/S60/967:975 | No text annotation | ||
| IL_6RM3_126 | 1/S60/857:859, 1/S60/967:973 | No text annotation | ||
| IL_6RM3_127 | 1/S60/861:862, 1/S60/963:965 | No text annotation | ||
| IL_6RM3_128 | 1/S60/871:874, 1/S60/902:905 | No text annotation | ||
| IL_6RM3_129 | 1/S60/928:931, 1/S60/943:949 | No text annotation | ||
| IL_6RM3_130 | 1/S60/1028:1033, 1/S60/1052:1057 | No text annotation | ||
| IL_6RM3_131 | 1/S60/1122:1124, 1/S60/1209:1212 | No text annotation | ||
| IL_6RM3_132 | 1/S60/1124:1127, 1/S60/1205:1209 | No text annotation | ||
| IL_6RM3_133 | 1/S60/1128:1130, 1/S60/1202:1204 | No text annotation | ||
| IL_6RM3_135 | 1/S60/1136:1139, 1/S60/1192:1195 | No text annotation | ||
| IL_6RM3_136 | 1/S60/1139:1142, 1/S60/1189:1192 | No text annotation | ||
| IL_6RM3_137 | 1/S60/1154:1157, 1/S60/1174:1177 | No text annotation | ||
| IL_6RM3_138 | 1/S60/1158:1160, 1/S60/1171:1173 | No text annotation | ||
| IL_6RM3_139 | 1/S60/1219:1221, 1/S60/1230:1232 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6RM3_140 | No text annotation | ||
| IL_6RM3_005 | No text annotation | ||
| IL_6RM3_010 | No text annotation | ||
| IL_6RM3_142 | No text annotation | ||
| IL_6RM3_143 | Tandem non-canonical cWW pairs | ||
| IL_6RM3_145 | Isolated non-canonical cWW contact | ||
| IL_6RM3_038 | Kink-turn | ||
| IL_6RM3_044 | Isolated non-canonical cWW pair | ||
| IL_6RM3_054 | No text annotation | ||
| IL_6RM3_150 | Isolated non-canonical cWW pair | ||
| IL_6RM3_080 | No text annotation | ||
| IL_6RM3_082 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6RM3_152 | No text annotation | ||
| IL_6RM3_091 | No text annotation | ||
| IL_6RM3_153 | No text annotation | ||
| IL_6RM3_110 | No text annotation | ||
| IL_6RM3_117 | No text annotation | ||
| IL_6RM3_123 | No text annotation | ||
| IL_6RM3_134 | No text annotation | ||
| IL_6RM3_161 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6RM3_021 | 1/L50/22:25, 1/L50/366:382, 1/L50/389:394 | No text annotation | geometric J3_7A0S_016 J3_07616.1 | |
| J3_6RM3_001 | 1/L50/36:43, 1/L50/76:82, 1/L50/100:101 | No text annotation | ||
| J3_6RM3_023 | 1/L50/192:202, 1/L50/219:226, 1/L50/281:293 | No text annotation | ||
| J3_6RM3_024 | 1/L50/192:203, 1/L50/214:226, 1/L50/281:293 | No text annotation | ||
| J3_6RM3_002 | 1/L50/540:546, 1/L50/631:633, 1/L50/649:652 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_6RM3_003 | 1/L50/554:556, 1/L50/590:594, 1/L50/617:623 | No text annotation | ||
| J3_6RM3_032 | 1/L50/713:714, 1/L50/769:772, 1/L50/796:800 | No text annotation | ||
| J3_6RM3_004 | 1/L50/1151:1153, 1/L50/1394:1396, 1/L50/1407:1410 | No text annotation | ||
| J3_6RM3_005 | 1/L50/1156:1159, 1/L50/1375:1380, 1/L50/1389:1391 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6RM3_026 | 1/L50/1185:1190, 1/L50/1204:1208, 1/L50/1225:1226 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_6RM3_027 | 1/L50/1235:1239, 1/L50/1248:1258, 1/L50/1345:1359 | No text annotation | ||
| J3_6RM3_007 | 1/L50/1939:1941, 1/L50/1965:1967, 1/L50/1976:1981 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_6RM3_008 | 1/L50/2154:2158, 1/L50/2183:2186, 1/L50/2198:2206 | No text annotation | ||
| J3_6RM3_009 | 1/L70/9:14, 1/L70/65:66, 1/L70/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_6RM3_010 | 1/S60/39:40, 1/S60/287:293, 1/S60/318:320 | No text annotation | ||
| J3_6RM3_028 | 1/S60/39:46, 1/S60/285:293, 1/S60/318:320 | No text annotation | ||
| J3_6RM3_011 | 1/S60/490:491, 1/S60/535:543, 1/S60/550:552 | No text annotation | ||
| J3_6RM3_012 | 1/S60/644:646, 1/S60/673:677, 1/S60/682:687 | No text annotation | ||
| J3_6RM3_013 | 1/S60/754:757, 1/S60/1067:1073, 1/S60/1095:1102 | No text annotation | ||
| J3_6RM3_014 | 1/S60/761:764, 1/S60/1005:1007, 1/S60/1060:1063 | No text annotation | ||
| J3_6RM3_015 | 1/S60/773:780, 1/S60/791:802, 1/S60/991:995 | No text annotation | ||
| J3_6RM3_016 | 1/S60/808:810, 1/S60/846:848, 1/S60/979:985 | No text annotation | ||
| J3_6RM3_017 | 1/S60/864:869, 1/S60/907:913, 1/S60/955:961 | No text annotation | ||
| J3_6RM3_019 | 1/S60/916:918, 1/S60/925:928, 1/S60/949:952 | No text annotation | ||
| J3_6RM3_031 | 1/S60/916:918, 1/S60/925:931, 1/S60/943:952 | No text annotation | ||
| J3_6RM3_020 | 1/S60/1007:1011, 1/S60/1023:1028, 1/S60/1057:1060 | No text annotation | ||
| J4_6RM3_001 | 1/L50/191:192, 1/L50/293:298, 1/L50/319:326, 1/L50/343:346 | No text annotation | homologous J4_8C3A_001 NA | |
| J4_6RM3_011 | 1/L50/1135:1136, 1/L50/1147:1148, 1/L50/1413:1424, 1/L50/1705:1710 | No text annotation | ||
| J4_6RM3_003 | 1/L50/1160:1164, 1/L50/1179:1184, 1/L50/1227:1228, 1/L50/1367:1374 | No text annotation | ||
| J4_6RM3_004 | 1/L50/1163:1164, 1/L50/1179:1184, 1/L50/1227:1228, 1/L50/1367:1373 | No text annotation | ||
| J4_6RM3_005 | 1/L50/1513:1517, 1/L50/1529:1533, 1/L50/1554:1558, 1/L50/1676:1681 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_6RM3_006 | 1/L50/1560:1562, 1/L50/1607:1608, 1/L50/1626:1635, 1/L50/1669:1674 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_6RM3_007 | 1/L50/1929:1933, 1/L50/1987:1991, 1/L50/2014:2016, 1/L50/2025:2027 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_6RM3_008 | 1/L50/2274:2277, 1/L50/2305:2307, 1/L50/2359:2362, 1/L50/2395:2398 | No text annotation | ||
| J4_6RM3_009 | 1/S60/82:90, 1/S60/163:165, 1/S60/211:215, 1/S60/237:238 | No text annotation | ||
| J4_6RM3_012 | 1/S60/445:453, 1/S60/582:587, 1/S60/628:639, 1/S60/696:698 | No text annotation | ||
| J5_6RM3_001 | 1/L50/454:459, 1/L50/525:528, 1/L50/667:670, 1/L50/1059:1060, 1/L50/1113:1119 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_6RM3_002 | 1/L50/1441:1449, 1/L50/1473:1474, 1/L50/1493:1494, 1/L50/1497:1505, 1/L50/1690:1692 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
| J5_6RM3_003 | 1/L50/1760:1767, 1/L50/2084:2092, 1/L50/2136:2145, 1/L50/2220:2226, 1/L50/2244:2249 | No text annotation | ||
| J5_6RM3_007 | 1/S60/29:32, 1/S60/328:331, 1/S60/341:343, 1/S60/373:375, 1/S60/421:424 | No text annotation | ||
| J5_6RM3_008 | 1/S60/29:32, 1/S60/328:331, 1/S60/341:346, 1/S60/364:375, 1/S60/421:424 | No text annotation | ||
| J5_6RM3_009 | 1/S60/52:55, 1/S60/73:80, 1/S60/240:242, 1/S60/263:265, 1/S60/276:280 | No text annotation | ||
| J6_6RM3_001 | 1/L50/34:36, 1/L50/101:106, 1/L50/137:147, 1/L50/154:158, 1/L50/185:189, 1/L50/348:355 | No text annotation | ||
| J6_6RM3_003 | 1/L50/1777:1780, 1/L50/1886:1889, 1/L50/1902:1903, 1/L50/1925:1928, 1/L50/2028:2039, 1/L50/2062:2073 | No text annotation | ||
| J7_6RM3_002 | 1/L50/675:680, 1/L50/693:694, 1/L50/816:819, 1/L50/843:848, 1/L50/859:863, 1/L50/1036:1037, 1/L50/1049:1054 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6RM3_022 | No text annotation | ||
| J3_6RM3_025 | No text annotation | ||
| J3_6RM3_006 | No text annotation | ||
| J3_6RM3_029 | No text annotation | ||
| J3_6RM3_030 | No text annotation | ||
| J3_6RM3_018 | No text annotation | ||
| J4_6RM3_002 | No text annotation | ||
| J4_6RM3_010 | No text annotation | ||
| J5_6RM3_004 | No text annotation | ||
| J5_6RM3_005 | No text annotation | ||
| J5_6RM3_006 | No text annotation | ||
| J6_6RM3_002 | No text annotation | ||
| J7_6RM3_001 | No text annotation |
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