4V8Z Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V8Z_001 | 1/B2/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_4V8Z_002 | 1/B2/70:81 | No text annotation Not in a motif group | homologous HL_4V88_187 HL_40069.1 | |
| HL_4V8Z_003 | 1/B2/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_4V8Z_004 | 1/B2/190:195 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_77805.2 | |
| HL_4V8Z_005 | 1/B2/230:235 | No text annotation Not in a motif group | geometric HL_6CZR_082 HL_03562.2 | |
| HL_4V8Z_006 | 1/B2/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_4V8Z_007 | 1/B2/276:279 | No text annotation Not in a motif group | geometric HL_6JOO_002 HL_38927.2 | |
| HL_4V8Z_008 | 1/B2/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_4V8Z_009 | 1/B2/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_4V8Z_010 | 1/B2/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_4V8Z_011 | 1/B2/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_4V8Z_012 | 1/B2/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_4V8Z_013 | 1/B2/487:500 | No text annotation Not in a motif group | ||
| HL_4V8Z_014 | 1/B2/520:532 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_4V8Z_015 | 1/B2/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_4V8Z_016 | 1/B2/703:735 | No text annotation Not in a motif group | ||
| HL_4V8Z_017 | 1/B2/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_4V8Z_018 | 1/B2/777:783 | No text annotation Not in a motif group | ||
| HL_4V8Z_019 | 1/B2/829:843 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_4V8Z_020 | 1/B2/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_4V8Z_021 | 1/B2/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_4V8Z_022 | 1/B2/997:1007 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_4V8Z_023 | 1/B2/1054:1065 | No text annotation Not in a motif group | ||
| HL_4V8Z_024 | 1/B2/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_4V8Z_025 | 1/B2/1121:1126 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_4V8Z_026 | 1/B2/1188:1197 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_4V8Z_027 | 1/B2/1238:1247 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_4V8Z_028 | 1/B2/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_4V8Z_029 | 1/B2/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_4V8Z_030 | 1/B2/1359:1364 | No text annotation Not in a motif group | homologous HL_4V88_216 HL_10278.1 | |
| HL_4V8Z_031 | 1/B2/1396:1402 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_4V8Z_032 | 1/B2/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_4V8Z_033 | 1/B2/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_4V8Z_034 | 1/B2/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_4V8Z_035 | 1/B2/1690:1711 | No text annotation Not in a motif group | ||
| HL_4V8Z_036 | 1/B2/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_4V8Z_037 | 1/B5/38:45 | No text annotation Not in a motif group | geometric HL_5TBW_001 HL_06192.2 | |
| HL_4V8Z_038 | 1/B5/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_4V8Z_039 | 1/B5/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_4V8Z_040 | 1/B5/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_98426.1 | |
| HL_4V8Z_041 | 1/B5/194:201 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_89380.2 | |
| HL_4V8Z_042 | 1/B5/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_4V8Z_043 | 1/B5/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_4V8Z_044 | 1/B5/278:287 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_4V8Z_045 | 1/B5/303:312 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_12078.2 | |
| HL_4V8Z_046 | 1/B5/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_4V8Z_047 | 1/B5/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_4V8Z_048 | 1/B5/543:548 | No text annotation Not in a motif group | geometric HL_2IZN_001 HL_97896.2 | |
| HL_4V8Z_049 | 1/B5/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_4V8Z_050 | 1/B5/640:649 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_89380.2 | |
| HL_4V8Z_051 | 1/B5/686:694 | No text annotation Not in a motif group | homologous HL_5TBW_015 HL_03345.1 | |
| HL_4V8Z_052 | 1/B5/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_4V8Z_053 | 1/B5/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_4V8Z_054 | 1/B5/763:768 | No text annotation Not in a motif group | homologous HL_8C3A_018 HL_34168.2 | |
| HL_4V8Z_055 | 1/B5/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_4V8Z_056 | 1/B5/876:885 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.6 | |
| HL_4V8Z_057 | 1/B5/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_4V8Z_058 | 1/B5/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_4V8Z_059 | 1/B5/1023:1029 | No text annotation Not in a motif group | ||
| HL_4V8Z_060 | 1/B5/1076:1083 | No text annotation Not in a motif group | homologous HL_5TBW_024 HL_71554.2 | |
| HL_4V8Z_061 | 1/B5/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_4V8Z_062 | 1/B5/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_4V8Z_063 | 1/B5/1239:1249 | No text annotation Not in a motif group | ||
| HL_4V8Z_064 | 1/B5/1262:1277 | No text annotation Not in a motif group | ||
| HL_4V8Z_065 | 1/B5/1347:1357 | No text annotation Not in a motif group | ||
| HL_4V8Z_066 | 1/B5/1403:1408 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_42097.1 | |
| HL_4V8Z_067 | 1/B5/1462:1470 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_89380.2 | |
| HL_4V8Z_068 | 1/B5/1506:1512 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_4V8Z_069 | 1/B5/1544:1549 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_76539.2 | |
| HL_4V8Z_070 | 1/B5/1562:1577 | No text annotation Not in a motif group | ||
| HL_4V8Z_071 | 1/B5/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_4V8Z_072 | 1/B5/1634:1639 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_42097.1 | |
| HL_4V8Z_073 | 1/B5/1680:1688 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_60812.1 | |
| HL_4V8Z_074 | 1/B5/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_4V8Z_075 | 1/B5/1760:1765 | Other HL Not in a motif group | homologous HL_5TBW_039 HL_56691.2 | |
| HL_4V8Z_076 | 1/B5/1792:1796 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_38927.2 | |
| HL_4V8Z_077 | 1/B5/1844:1851 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_4V8Z_078 | 1/B5/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_4V8Z_079 | 1/B5/1923:1928 | UNCG Not in a motif group | geometric HL_5TBW_043 HL_03562.2 | |
| HL_4V8Z_081 | 1/B5/2110:2114 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_20062.1 | |
| HL_4V8Z_082 | 1/B5/2135:2145 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.5 | |
| HL_4V8Z_083 | 1/B5/2164:2170 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_42097.1 | |
| HL_4V8Z_084 | 1/B5/2220:2225 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_42097.1 | |
| HL_4V8Z_085 | 1/B5/2253:2263 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_4V8Z_086 | 1/B5/2292:2300 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_51824.1 | |
| HL_4V8Z_087 | 1/B5/2369:2378 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.6 | |
| HL_4V8Z_089 | 1/B5/2534:2545 | No text annotation Not in a motif group | ||
| HL_4V8Z_090 | 1/B5/2568:2573 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_4V8Z_091 | 1/B5/2616:2624 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_53171.2 | |
| HL_4V8Z_092 | 1/B5/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_4V8Z_093 | 1/B5/2673:2681 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.4 | |
| HL_4V8Z_094 | 1/B5/2693:2700 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_4V8Z_095 | 1/B5/2724:2732 | No text annotation Not in a motif group | homologous HL_5TBW_058 HL_92229.2 | |
| HL_4V8Z_096 | 1/B5/2744:2749 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_42097.1 | |
| HL_4V8Z_097 | 1/B5/2776:2784 | No text annotation Not in a motif group | homologous HL_5TBW_060 HL_96598.1 | |
| HL_4V8Z_098 | 1/B5/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_4V8Z_099 | 1/B5/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_4V8Z_100 | 1/B5/2920:2926 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_43656.2 | |
| HL_4V8Z_101 | 1/B5/2963:2968 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.1 | |
| HL_4V8Z_102 | 1/B5/3025:3030 | GNRA Not in a motif group | geometric HL_5TBW_065 HL_42097.1 | |
| HL_4V8Z_103 | 1/B5/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_46680.1 | |
| HL_4V8Z_104 | 1/B5/3110:3124 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.7 | |
| HL_4V8Z_105 | 1/B5/3194:3197 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_98426.1 | |
| HL_4V8Z_106 | 1/B5/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_4V8Z_107 | 1/B5/3303:3311 | No text annotation Not in a motif group | geometric HL_5TBW_070 HL_27930.1 | |
| HL_4V8Z_108 | 1/B5/3350:3353 | No text annotation Not in a motif group | homologous HL_8C3A_072 HL_53837.1 | |
| HL_4V8Z_109 | 1/B7/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_4V8Z_110 | 1/B7/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_4V8Z_111 | 1/B8/69:89 | No text annotation Not in a motif group | ||
| HL_4V8Z_112 | 1/B8/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_4V8Z_113 | 1/B8/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_4V8Z_114 | 1/CW/13:22 | No text annotation Not in a motif group | homologous HL_5E81_205 NA | |
| HL_4V8Z_115 | 1/CW/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_5IBB_210 HL_53597.2 | |
| HL_4V8Z_116 | 1/CW/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5UD5_003 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V8Z_080 | No text annotation | ||
| HL_4V8Z_088 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V8Z_001 | 1/B2/24:26, 1/B2/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_4V8Z_002 | 1/B2/35:37, 1/B2/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_4V8Z_003 | 1/B2/37:41, 1/B2/466:471 | No text annotation Not in a motif group | homologous IL_4V88_386 IL_41507.1 | |
| IL_4V8Z_004 | 1/B2/42:48, 1/B2/431:433 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_4V8Z_005 | 1/B2/50:52, 1/B2/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_4V8Z_006 | 1/B2/58:63, 1/B2/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_4V8Z_007 | 1/B2/64:69, 1/B2/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_4V8Z_008 | 1/B2/109:112, 1/B2/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_4V8Z_009 | 1/B2/113:116, 1/B2/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_4V8Z_010 | 1/B2/117:122, 1/B2/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_4V8Z_011 | 1/B2/143:149, 1/B2/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_4V8Z_012 | 1/B2/150:152, 1/B2/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_6RA4_002 IL_51629.2 | |
| IL_4V8Z_013 | 1/B2/186:189, 1/B2/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_4V8Z_014 | 1/B2/204:206, 1/B2/259:263 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.2 | |
| IL_4V8Z_015 | 1/B2/206:208, 1/B2/257:259 | No text annotation Not in a motif group | geometric IL_4V88_398 IL_95997.1 | |
| IL_4V8Z_017 | 1/B2/265:267, 1/B2/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_4V8Z_018 | 1/B2/270:273, 1/B2/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_4V8Z_019 | 1/B2/275:276, 1/B2/279:281 | Single bulged U Not in a motif group | homologous IL_4V88_401 IL_83039.13 | |
| IL_4V8Z_020 | 1/B2/311:316, 1/B2/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_4V8Z_021 | 1/B2/318:323, 1/B2/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_48100.2 | |
| IL_4V8Z_022 | 1/B2/363:365, 1/B2/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_4V8Z_023 | 1/B2/389:391, 1/B2/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_4V8Z_024 | 1/B2/411:413, 1/B2/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_4V8Z_025 | 1/B2/439:441, 1/B2/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_4V8Z_026 | 1/B2/443:448, 1/B2/458:461 | C-loop with extra cWW pair Not in a motif group | homologous IL_4V88_408 IL_93630.2 | |
| IL_4V8Z_027 | 1/B2/480:485, 1/B2/502:508 | No text annotation Not in a motif group | ||
| IL_4V8Z_028 | 1/B2/517:520, 1/B2/532:535 | Double sheared Not in a motif group | geometric IL_4LFB_060 IL_09705.9 | |
| IL_4V8Z_029 | 1/B2/550:557, 1/B2/587:588 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4V88_413 IL_15861.7 | |
| IL_4V8Z_030 | 1/B2/557:559, 1/B2/586:587 | Single bulged U Not in a motif group | geometric IL_4V88_414 IL_83039.13 | |
| IL_4V8Z_031 | 1/B2/562:568, 1/B2/575:583 | No text annotation Not in a motif group | homologous IL_8C3A_425 IL_55871.1 | |
| IL_4V8Z_032 | 1/B2/616:622, 1/B2/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_4V8Z_033 | 1/B2/624:626, 1/B2/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_4V8Z_034 | 1/B2/627:631, 1/B2/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_4V8Z_035 | 1/B2/646:648, 1/B2/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
| IL_4V8Z_037 | 1/B2/652:658, 1/B2/676:682 | No text annotation Not in a motif group | ||
| IL_4V8Z_039 | 1/B2/746:747, 1/B2/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_4V8Z_040 | 1/B2/748:750, 1/B2/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_4V8Z_041 | 1/B2/751:760, 1/B2/790:798 | No text annotation Not in a motif group | ||
| IL_4V8Z_042 | 1/B2/817:824, 1/B2/848:854 | No text annotation Not in a motif group | ||
| IL_4V8Z_043 | 1/B2/825:827, 1/B2/845:847 | Isolated cWH basepair Not in a motif group | geometric IL_4KQ0_005 IL_51629.2 | |
| IL_4V8Z_044 | 1/B2/865:866, 1/B2/962:965 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_4V8Z_045 | 1/B2/867:870, 1/B2/957:961 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.2 | |
| IL_4V8Z_046 | 1/B2/871:874, 1/B2/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_4V8Z_047 | 1/B2/874:878, 1/B2/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_4V8Z_048 | 1/B2/885:888, 1/B2/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_4V8Z_049 | 1/B2/893:899, 1/B2/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_4V8Z_050 | 1/B2/985:990, 1/B2/1014:1016 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
| IL_4V8Z_051 | 1/B2/990:994, 1/B2/1010:1014 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_436 IL_17136.1 | |
| IL_4V8Z_052 | 1/B2/1034:1036, 1/B2/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_4V8Z_053 | 1/B2/1041:1044, 1/B2/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_4V8Z_054 | 1/B2/1051:1053, 1/B2/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_4V8Z_055 | 1/B2/1111:1118, 1/B2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_4V8Z_056 | 1/B2/1146:1147, 1/B2/1630:1632 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_4V8Z_057 | 1/B2/1149:1151, 1/B2/1627:1628 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_4V8Z_058 | 1/B2/1157:1160, 1/B2/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_4V8Z_059 | 1/B2/1173:1175, 1/B2/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_4V8Z_060 | 1/B2/1178:1179, 1/B2/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_4V8Z_061 | 1/B2/1213:1215, 1/B2/1448:1450 | No text annotation Not in a motif group | geometric IL_4V88_446 IL_95997.1 | |
| IL_4V8Z_062 | 1/B2/1223:1230, 1/B2/1257:1260 | No text annotation Not in a motif group | ||
| IL_4V8Z_063 | 1/B2/1230:1233, 1/B2/1252:1257 | No text annotation Not in a motif group | ||
| IL_4V8Z_064 | 1/B2/1234:1236, 1/B2/1249:1251 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_4V8Z_065 | 1/B2/1268:1270, 1/B2/1440:1441 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_4V8Z_066 | 1/B2/1272:1278, 1/B2/1430:1438 | No text annotation Not in a motif group | ||
| IL_4V8Z_067 | 1/B2/1280:1281, 1/B2/1426:1428 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_4V8Z_068 | 1/B2/1290:1292, 1/B2/1323:1325 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_4V8Z_069 | 1/B2/1306:1308, 1/B2/1317:1318 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_42622.2 | |
| IL_4V8Z_070 | 1/B2/1339:1342, 1/B2/1383:1385 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_4V8Z_071 | 1/B2/1345:1348, 1/B2/1377:1380 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_4V8Z_072 | 1/B2/1352:1354, 1/B2/1369:1373 | No text annotation Not in a motif group | homologous IL_4V88_457 IL_95997.1 | |
| IL_4V8Z_073 | 1/B2/1389:1391, 1/B2/1407:1412 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_458 IL_58032.1 | |
| IL_4V8Z_074 | 1/B2/1480:1487, 1/B2/1519:1527 | No text annotation Not in a motif group | homologous IL_4V88_459 IL_10447.1 | |
| IL_4V8Z_075 | 1/B2/1488:1494, 1/B2/1513:1518 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_4V8Z_076 | 1/B2/1495:1498, 1/B2/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_4V8Z_077 | 1/B2/1540:1545, 1/B2/1566:1571 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_4V8Z_078 | 1/B2/1636:1638, 1/B2/1764:1767 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_4V8Z_079 | 1/B2/1638:1641, 1/B2/1760:1764 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4V8Z_080 | 1/B2/1642:1644, 1/B2/1757:1759 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_4V8Z_081 | 1/B2/1644:1647, 1/B2/1753:1757 | Non canonical cWW and near pair Not in a motif group | homologous IL_4V88_466 IL_42334.1 | |
| IL_4V8Z_082 | 1/B2/1650:1652, 1/B2/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_4V8Z_083 | 1/B2/1653:1656, 1/B2/1744:1747 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_4V8Z_084 | 1/B2/1656:1658, 1/B2/1743:1744 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.13 | |
| IL_4V8Z_085 | 1/B2/1665:1667, 1/B2/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_4V8Z_086 | 1/B2/1669:1672, 1/B2/1729:1732 | Double sheared Not in a motif group | geometric IL_4V88_471 IL_09705.9 | |
| IL_4V8Z_087 | 1/B2/1672:1674, 1/B2/1727:1729 | No text annotation Not in a motif group | homologous IL_4V88_472 IL_95997.1 | |
| IL_4V8Z_088 | 1/B2/1675:1678, 1/B2/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_4V8Z_089 | 1/B2/1678:1682, 1/B2/1719:1723 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_4V8Z_090 | 1/B2/1683:1685, 1/B2/1716:1718 | No text annotation Not in a motif group | homologous IL_4V88_475 IL_95997.1 | |
| IL_4V8Z_091 | 1/B2/1687:1690, 1/B2/1711:1714 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1JID_002 IL_30621.2 | |
| IL_4V8Z_093 | 1/B5/7:8, 1/B8/150:152 | Single bulged C Not in a motif group | geometric IL_5TBW_002 IL_61258.12 | |
| IL_4V8Z_094 | 1/B5/13:15, 1/B8/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_4V8Z_095 | 1/B5/27:28, 1/B5/56:58 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_76488.2 | |
| IL_4V8Z_096 | 1/B5/31:38, 1/B5/45:53 | tSH-tHW-tHH-tHS Not in a motif group | homologous IL_5TBW_005 IL_35728.2 | |
| IL_4V8Z_097 | 1/B5/82:89, 1/B5/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_4V8Z_098 | 1/B5/123:124, 1/B5/144:149 | No text annotation Not in a motif group | homologous IL_5TBW_007 IL_19724.2 | |
| IL_4V8Z_099 | 1/B5/125:127, 1/B5/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_4V8Z_100 | 1/B5/163:165, 1/B5/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_4V8Z_102 | 1/B5/169:174, 1/B5/244:253 | No text annotation Not in a motif group | ||
| IL_4V8Z_103 | 1/B5/177:179, 1/B5/237:241 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_011 IL_63450.2 | |
| IL_4V8Z_104 | 1/B5/189:191, 1/B5/204:205 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.13 | |
| IL_4V8Z_105 | 1/B5/337:339, 1/B8/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_4V8Z_106 | 1/B5/376:379, 1/B5/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_4V8Z_107 | 1/B5/404:410, 1/B8/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_4V8Z_108 | 1/B5/429:431, 1/B5/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_4V8Z_110 | 1/B5/512:513, 1/B5/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_4V8Z_111 | 1/B5/517:525, 1/B5/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_4V8Z_112 | 1/B5/531:538, 1/B5/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_4V8Z_113 | 1/B5/668:670, 1/B5/792:794 | No text annotation Not in a motif group | homologous IL_5TBW_021 IL_95997.1 | |
| IL_4V8Z_114 | 1/B5/680:684, 1/B5/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_4V8Z_115 | 1/B5/725:728, 1/B5/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.1 | |
| IL_4V8Z_116 | 1/B5/752:753, 1/B5/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.2 | |
| IL_4V8Z_117 | 1/B5/755:756, 1/B5/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_4V8Z_118 | 1/B5/758:763, 1/B5/768:773 | No text annotation Not in a motif group | homologous IL_5TBW_026 IL_19954.2 | |
| IL_4V8Z_119 | 1/B5/803:805, 1/B5/938:940 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_95997.1 | |
| IL_4V8Z_120 | 1/B5/805:809, 1/B5/931:938 | No text annotation Not in a motif group | homologous IL_5TBW_028 IL_17470.6 | |
| IL_4V8Z_121 | 1/B5/828:829, 1/B5/895:897 | No text annotation Not in a motif group | homologous IL_8C3A_031 IL_37497.2 | |
| IL_4V8Z_122 | 1/B5/833:834, 1/B5/859:861 | Single bulged G Not in a motif group | homologous IL_5TBW_029 IL_00225.2 | |
| IL_4V8Z_123 | 1/B5/834:838, 1/B5/855:859 | Triple sheared Not in a motif group | geometric IL_5J7L_263 IL_56467.8 | |
| IL_4V8Z_124 | 1/B5/869:872, 1/B5/888:890 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_05564.2 | |
| IL_4V8Z_125 | 1/B5/873:875, 1/B5/886:887 | Single bulged U Not in a motif group | homologous IL_5TBW_032 IL_83039.13 | |
| IL_4V8Z_126 | 1/B5/907:909, 1/B5/919:923 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_033 IL_90991.6 | |
| IL_4V8Z_127 | 1/B5/954:956, 1/B5/965:967 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_95997.1 | |
| IL_4V8Z_128 | 1/B5/969:970, 1/B5/1111:1113 | Single stack bend Not in a motif group | homologous IL_5TBW_035 IL_76488.2 | |
| IL_4V8Z_129 | 1/B5/977:982, 1/B5/1101:1104 | No text annotation Not in a motif group | homologous IL_8C3A_039 IL_59027.1 | |
| IL_4V8Z_130 | 1/B5/983:985, 1/B5/1099:1100 | Single bulged G Not in a motif group | homologous IL_5TBW_037 IL_00225.2 | |
| IL_4V8Z_131 | 1/B5/991:997, 1/B5/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5TBW_038 IL_93830.3 | |
| IL_4V8Z_132 | 1/B5/997:998, 1/B5/1050:1052 | Minor groove platform Not in a motif group | homologous IL_5TBW_039 IL_42622.2 | |
| IL_4V8Z_133 | 1/B5/999:1004, 1/B5/1046:1049 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_02509.1 | |
| IL_4V8Z_134 | 1/B5/1006:1009, 1/B5/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_4V8Z_135 | 1/B5/1009:1011, 1/B5/1039:1041 | No text annotation Not in a motif group | homologous IL_5TBW_042 IL_95997.1 | |
| IL_4V8Z_136 | 1/B5/1013:1015, 1/B5/1035:1037 | No text annotation Not in a motif group | geometric IL_4KR9_002 IL_51629.2 | |
| IL_4V8Z_137 | 1/B5/1015:1018, 1/B5/1034:1035 | Multiple bulged bases Not in a motif group | geometric IL_4LFB_005 IL_76389.1 | |
| IL_4V8Z_138 | 1/B5/1018:1020, 1/B5/1032:1034 | No text annotation Not in a motif group | geometric IL_5UNE_004 IL_95997.1 | |
| IL_4V8Z_140 | 1/B5/1069:1071, 1/B5/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_95997.1 | |
| IL_4V8Z_141 | 1/B5/1074:1076, 1/B5/1083:1084 | No text annotation Not in a motif group | homologous IL_8C3A_048 IL_00225.2 | |
| IL_4V8Z_142 | 1/B5/1120:1122, 1/B5/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_4V8Z_143 | 1/B5/1123:1125, 1/B5/1133:1135 | No text annotation Not in a motif group | homologous IL_8C3A_050 IL_52767.2 | |
| IL_4V8Z_144 | 1/B5/1167:1171, 1/B5/1328:1332 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.2 | |
| IL_4V8Z_145 | 1/B5/1173:1180, 1/B5/1325:1326 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5TBW_049 IL_15861.7 | |
| IL_4V8Z_146 | 1/B5/1180:1182, 1/B5/1324:1325 | Single bulged U Not in a motif group | homologous IL_5TBW_050 IL_83039.13 | |
| IL_4V8Z_147 | 1/B5/1187:1194, 1/B5/1314:1319 | No text annotation Not in a motif group | homologous IL_5TBW_051 IL_27086.1 | |
| IL_4V8Z_148 | 1/B5/1194:1205, 1/B5/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_4V8Z_149 | 1/B5/1207:1209, 1/B5/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_4V8Z_150 | 1/B5/1234:1238, 1/B5/1250:1254 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_4V8Z_151 | 1/B5/1376:1378, 1/B5/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_4V8Z_152 | 1/B5/1385:1387, 1/B5/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_4V8Z_153 | 1/B5/1388:1395, 1/B5/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_4V8Z_154 | 1/B5/1398:1400, 1/B5/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_4V8Z_155 | 1/B5/1444:1450, 1/B5/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_4V8Z_156 | 1/B5/1492:1495, 1/B5/1835:1836 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_050 IL_50694.2 | |
| IL_4V8Z_157 | 1/B5/1500:1505, 1/B5/1513:1516 | No text annotation Not in a motif group | homologous IL_5TBW_062 IL_93630.2 | |
| IL_4V8Z_158 | 1/B5/1532:1536, 1/B5/1585:1590 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_89002.2 | |
| IL_4V8Z_160 | 1/B5/1618:1621, 1/B5/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_4V8Z_161 | 1/B5/1623:1625, 1/B5/1818:1822 | No text annotation Not in a motif group | homologous IL_8C3A_071 IL_82068.2 | |
| IL_4V8Z_162 | 1/B5/1625:1627, 1/B5/1816:1818 | No text annotation Not in a motif group | geometric IL_7A0S_031 IL_95997.1 | |
| IL_4V8Z_163 | 1/B5/1627:1631, 1/B5/1811:1816 | No text annotation Not in a motif group | geometric IL_5TBW_066 IL_48431.1 | |
| IL_4V8Z_164 | 1/B5/1645:1649, 1/B5/1806:1810 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.8 | |
| IL_4V8Z_165 | 1/B5/1661:1663, 1/B5/1786:1788 | No text annotation Not in a motif group | homologous IL_5TBW_068 IL_95997.1 | |
| IL_4V8Z_166 | 1/B5/1669:1670, 1/B5/1778:1780 | Single bulged C Not in a motif group | homologous IL_5TBW_069 IL_61258.12 | |
| IL_4V8Z_167 | 1/B5/1670:1671, 1/B5/1776:1778 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_4V8Z_168 | 1/B5/1694:1698, 1/B5/1747:1752 | No text annotation Not in a motif group | homologous IL_5TBW_071 IL_69313.1 | |
| IL_4V8Z_169 | 1/B5/1702:1707, 1/B5/1737:1743 | No text annotation Not in a motif group | homologous IL_8C3A_078 IL_39753.1 | |
| IL_4V8Z_170 | 1/B5/1711:1717, 1/B5/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_4V8Z_171 | 1/B5/1883:1889, 1/B5/2346:2349 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
| IL_4V8Z_172 | 1/B5/1895:1897, 1/B5/2338:2340 | Isolated tWW turn Not in a motif group | homologous IL_5TBW_075 IL_54997.7 | |
| IL_4V8Z_173 | 1/B5/1898:1901, 1/B5/2336:2337 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_4V8Z_174 | 1/B5/1901:1906, 1/B5/2333:2336 | Intercalated tWH Not in a motif group | homologous IL_5TBW_077 IL_82842.2 | |
| IL_4V8Z_175 | 1/B5/1918:1923, 1/B5/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_5TBW_078 IL_65969.2 | |
| IL_4V8Z_176 | 1/B5/1940:1942, 1/B5/2106:2108 | No text annotation Not in a motif group | homologous IL_5TBW_079 IL_95997.1 | |
| IL_4V8Z_177 | 1/B5/1947:1948, 1/B5/2098:2101 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_4V8Z_178 | 1/B5/2128:2129, 1/B5/2323:2325 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_37497.2 | |
| IL_4V8Z_179 | 1/B5/2156:2161, 1/B5/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_4V8Z_180 | 1/B5/2196:2199, 1/B5/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.1 | |
| IL_4V8Z_181 | 1/B5/2200:2201, 1/B5/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_4V8Z_182 | 1/B5/2204:2206, 1/B5/2237:2238 | Single bulged U Not in a motif group | homologous IL_5TBW_086 IL_83039.13 | |
| IL_4V8Z_183 | 1/B5/2276:2277, 1/B5/2307:2310 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_59677.2 | |
| IL_4V8Z_184 | 1/B5/2277:2288, 1/B5/2304:2307 | No text annotation Not in a motif group | homologous IL_5TBW_090 IL_81589.2 | |
| IL_4V8Z_185 | 1/B5/2391:2394, 1/B5/2986:2988 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_4V8Z_186 | 1/B5/2396:2398, 1/B5/2981:2984 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.5 | |
| IL_4V8Z_187 | 1/B5/2409:2411, 1/B5/2811:2812 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.13 | |
| IL_4V8Z_188 | 1/B5/2412:2413, 1/B5/2807:2810 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_4V8Z_189 | 1/B5/2423:2425, 1/B5/2604:2607 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.7 | |
| IL_4V8Z_190 | 1/B5/2520:2526, 1/B5/2584:2587 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_4V8Z_192 | 1/B5/2614:2615, 1/B5/2625:2627 | No text annotation Not in a motif group | homologous IL_8C3A_107 IL_69996.1 | |
| IL_4V8Z_193 | 1/B5/2666:2668, 1/B5/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5TBW_099 IL_38958.7 | |
| IL_4V8Z_194 | 1/B5/2714:2716, 1/B5/2740:2741 | Single bulged A Not in a motif group | geometric IL_5WWT_001 IL_37497.2 | |
| IL_4V8Z_195 | 1/B5/2718:2721, 1/B5/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_4V8Z_196 | 1/B5/2770:2773, 1/B5/2787:2788 | Single stack bend with bulge Not in a motif group | homologous IL_5TBW_101 IL_76488.2 | |
| IL_4V8Z_197 | 1/B5/2823:2824, 1/B5/2865:2867 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.1 | |
| IL_4V8Z_198 | 1/B5/2824:2826, 1/B5/2863:2865 | No text annotation Not in a motif group | homologous IL_5TBW_103 IL_95997.1 | |
| IL_4V8Z_199 | 1/B5/2826:2828, 1/B5/2862:2863 | Major groove platform Not in a motif group | geometric IL_4V9F_083 IL_76223.2 | |
| IL_4V8Z_200 | 1/B5/2828:2830, 1/B5/2858:2862 | No text annotation Not in a motif group | homologous IL_5TBW_105 IL_92788.2 | |
| IL_4V8Z_201 | 1/B5/2835:2839, 1/B5/2849:2853 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.8 | |
| IL_4V8Z_202 | 1/B5/2876:2877, 1/B5/2949:2951 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_4V8Z_203 | 1/B5/2879:2881, 1/B5/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_4V8Z_204 | 1/B5/2881:2882, 1/B5/2940:2943 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_109 IL_71530.2 | |
| IL_4V8Z_205 | 1/B5/2889:2891, 1/B5/2912:2914 | No text annotation Not in a motif group | homologous IL_5TBW_110 IL_51629.2 | |
| IL_4V8Z_206 | 1/B5/2891:2892, 1/B5/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.3 | |
| IL_4V8Z_207 | 1/B5/2918:2920, 1/B5/2926:2928 | No text annotation Not in a motif group | homologous IL_5TBW_112 IL_95997.1 | |
| IL_4V8Z_208 | 1/B5/2960:2961, 1/B5/2970:2972 | Single bulged A Not in a motif group | homologous IL_5TBW_113 IL_37497.2 | |
| IL_4V8Z_209 | 1/B5/3004:3007, 1/B5/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_4V8Z_210 | 1/B5/3012:3014, 1/B5/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_4V8Z_211 | 1/B5/3018:3025, 1/B5/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_116 IL_04346.7 | |
| IL_4V8Z_212 | 1/B5/3047:3051, 1/B5/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_4V8Z_213 | 1/B5/3054:3059, 1/B5/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_4V8Z_214 | 1/B5/3063:3064, 1/B5/3077:3080 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_4V8Z_215 | 1/B5/3103:3107, 1/B5/3127:3131 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_89002.2 | |
| IL_4V8Z_216 | 1/B5/3161:3166, 1/B5/3284:3289 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_4V8Z_217 | 1/B5/3168:3170, 1/B5/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_95997.1 | |
| IL_4V8Z_218 | 1/B5/3177:3179, 1/B5/3210:3211 | Single bulged A Not in a motif group | homologous IL_5TBW_123 IL_37497.2 | |
| IL_4V8Z_219 | 1/B5/3179:3188, 1/B5/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_4V8Z_220 | 1/B5/3193:3194, 1/B5/3197:3199 | Single bulged U Not in a motif group | homologous IL_5TBW_125 IL_83039.13 | |
| IL_4V8Z_221 | 1/B5/3225:3229, 1/B5/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_4V8Z_222 | 1/B5/3233:3235, 1/B5/3252:3254 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_4V8Z_223 | 1/B5/3235:3238, 1/B5/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_128 IL_30621.2 | |
| IL_4V8Z_224 | 1/B5/3300:3303, 1/B5/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_4V8Z_225 | 1/B5/3318:3320, 1/B5/3387:3388 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.13 | |
| IL_4V8Z_226 | 1/B5/3324:3325, 1/B5/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_4V8Z_227 | 1/B5/3328:3330, 1/B5/3373:3378 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.2 | |
| IL_4V8Z_228 | 1/B5/3332:3337, 1/B5/3367:3371 | No text annotation Not in a motif group | homologous IL_5TBW_133 IL_83162.5 | |
| IL_4V8Z_229 | 1/B5/3340:3342, 1/B5/3363:3364 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.13 | |
| IL_4V8Z_230 | 1/B5/3342:3345, 1/B5/3360:3363 | Double sheared Not in a motif group | geometric IL_4V9F_100 IL_09705.9 | |
| IL_4V8Z_231 | 1/B5/3349:3350, 1/B5/3353:3356 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_4V8Z_232 | 1/B7/15:16, 1/B7/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_4V8Z_233 | 1/B7/21:27, 1/B7/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_4V8Z_234 | 1/B7/28:29, 1/B7/49:52 | Minor groove platform Not in a motif group | homologous IL_5TBW_374 IL_63797.2 | |
| IL_4V8Z_235 | 1/B7/29:30, 1/B7/47:49 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_4V8Z_236 | 1/B7/32:36, 1/B7/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_4V8Z_237 | 1/B7/72:80, 1/B7/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_4V8Z_238 | 1/B7/84:87, 1/B7/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_4V8Z_239 | 1/B8/44:64, 1/B8/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_4V8Z_240 | 1/B8/64:66, 1/B8/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_82068.2 | |
| IL_4V8Z_241 | 1/B8/68:69, 1/B8/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.13 | |
| IL_4V8Z_242 | 1/CW/50:52, 1/CW/62:64 | No text annotation Not in a motif group | homologous IL_4V9K_064 IL_95997.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V8Z_016 | No text annotation | ||
| IL_4V8Z_036 | No text annotation | ||
| IL_4V8Z_038 | No text annotation | ||
| IL_4V8Z_092 | No text annotation | ||
| IL_4V8Z_101 | No text annotation | ||
| IL_4V8Z_109 | No text annotation | ||
| IL_4V8Z_139 | Tandem non-canonical cWW pairs | ||
| IL_4V8Z_159 | Isolated cWH basepair | ||
| IL_4V8Z_191 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V8Z_001 | 1/B2/760:763, 1/B2/773:775, 1/B2/785:790 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_4V8Z_002 | 1/B2/881:884, 1/B2/928:936, 1/B2/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_4V8Z_003 | 1/B2/1037:1039, 1/B2/1079:1083, 1/B2/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_4V8Z_004 | 1/B2/1161:1164, 1/B2/1581:1587, 1/B2/1609:1616 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_4V8Z_005 | 1/B2/1168:1171, 1/B2/1468:1470, 1/B2/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_4V8Z_006 | 1/B2/1180:1187, 1/B2/1198:1209, 1/B2/1454:1458 | No text annotation Not in a motif group | ||
| J3_4V8Z_007 | 1/B2/1215:1220, 1/B2/1263:1267, 1/B2/1442:1448 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_4V8Z_008 | 1/B2/1283:1288, 1/B2/1327:1332, 1/B2/1419:1424 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_4V8Z_009 | 1/B2/1336:1338, 1/B2/1386:1389, 1/B2/1412:1415 | No text annotation Not in a motif group | homologous J3_4V88_040 NA | |
| J3_4V8Z_010 | 1/B2/1470:1474, 1/B2/1533:1540, 1/B2/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA | |
| J3_4V8Z_011 | 1/B5/113:123, 1/B5/149:158, 1/B5/263:267 | No text annotation Not in a motif group | ||
| J3_4V8Z_012 | 1/B5/814:820, 1/B5/905:907, 1/B5/923:926 | No text annotation Not in a motif group | homologous J3_5TBW_004 NA | |
| J3_4V8Z_013 | 1/B5/829:831, 1/B5/863:867, 1/B5/892:895 | No text annotation Not in a motif group | homologous J3_8C3A_004 NA | |
| J3_4V8Z_014 | 1/B5/1479:1485, 1/B5/1857:1859, 1/B5/1871:1874 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_4V8Z_015 | 1/B5/1488:1491, 1/B5/1837:1843, 1/B5/1852:1854 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_4V8Z_016 | 1/B5/2432:2435, 1/B5/2512:2517, 1/B5/2590:2597 | No text annotation Not in a motif group | homologous J3_5TBW_012 NA | |
| J3_4V8Z_017 | 1/B5/2529:2532, 1/B5/2547:2563, 1/B5/2578:2581 | No text annotation Not in a motif group | ||
| J3_4V8Z_018 | 1/B5/2664:2666, 1/B5/2690:2692, 1/B5/2701:2706 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_4V8Z_019 | 1/B5/2886:2889, 1/B5/2914:2916, 1/B5/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_4V8Z_020 | 1/B5/3298:3300, 1/B5/3314:3318, 1/B5/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA |
Problematic loops
No problematic loops
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