4V8Z | Motifs

116 Hairpin loops
242 Internal loops
20 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	HL_4V8Z_001 ➜	1/B2/7:17	NA	NA
2	HL_4V8Z_002 ➜	1/B2/70:81	NA	NA
3	HL_4V8Z_003 ➜	1/B2/154:160	NA	NA
4	HL_4V8Z_004 ➜	1/B2/190:195	NA	NA
5	HL_4V8Z_005 ➜	1/B2/230:235	NA	NA
6	HL_4V8Z_006 ➜	1/B2/243:250	NA	NA
7	HL_4V8Z_007 ➜	1/B2/276:279	NA	NA
8	HL_4V8Z_008 ➜	1/B2/330:338	NA	NA
9	HL_4V8Z_009 ➜	1/B2/368:373	NA	NA
10	HL_4V8Z_010 ➜	1/B2/393:404	NA	NA
11	HL_4V8Z_011 ➜	1/B2/414:419	NA	NA
12	HL_4V8Z_012 ➜	1/B2/450:456	NA	NA
13	HL_4V8Z_013 ➜	1/B2/487:500	NA	NA
14	HL_4V8Z_014 ➜	1/B2/520:532	NA	NA
15	HL_4V8Z_015 ➜	1/B2/569:574	NA	NA
16	HL_4V8Z_016 ➜	1/B2/703:735	NA	NA
17	HL_4V8Z_017 ➜	1/B2/764:772	NA	NA
18	HL_4V8Z_018 ➜	1/B2/777:783	NA	NA
19	HL_4V8Z_019 ➜	1/B2/829:843	NA	NA
20	HL_4V8Z_020 ➜	1/B2/900:909	NA	NA
21	HL_4V8Z_021 ➜	1/B2/937:942	NA	NA
22	HL_4V8Z_022 ➜	1/B2/997:1007	NA	NA
23	HL_4V8Z_023 ➜	1/B2/1054:1065	NA	NA
24	HL_4V8Z_024 ➜	1/B2/1084:1089	NA	NA
25	HL_4V8Z_025 ➜	1/B2/1121:1126	NA	NA
26	HL_4V8Z_026 ➜	1/B2/1188:1197	NA	NA
27	HL_4V8Z_027 ➜	1/B2/1238:1247	NA	NA
28	HL_4V8Z_028 ➜	1/B2/1296:1301	NA	NA
29	HL_4V8Z_029 ➜	1/B2/1309:1316	NA	NA
30	HL_4V8Z_030 ➜	1/B2/1359:1364	NA	NA
31	HL_4V8Z_031 ➜	1/B2/1396:1402	NA	NA
32	HL_4V8Z_032 ➜	1/B2/1501:1506	NA	NA
33	HL_4V8Z_033 ➜	1/B2/1550:1561	NA	NA
34	HL_4V8Z_034 ➜	1/B2/1594:1602	NA	NA
35	HL_4V8Z_035 ➜	1/B2/1690:1711	NA	NA
36	HL_4V8Z_036 ➜	1/B2/1778:1783	NA	NA
37	HL_4V8Z_037 ➜	1/B5/38:45	NA	NA
38	HL_4V8Z_038 ➜	1/B5/69:74	NA	NA
39	HL_4V8Z_039 ➜	1/B5/90:96	NA	NA
40	HL_4V8Z_040 ➜	1/B5/132:136	NA	NA
41	HL_4V8Z_041 ➜	1/B5/194:201	NA	NA
42	HL_4V8Z_042 ➜	1/B5/208:212	NA	NA
43	HL_4V8Z_043 ➜	1/B5/216:224	NA	NA
44	HL_4V8Z_044 ➜	1/B5/278:287	NA	NA
45	HL_4V8Z_045 ➜	1/B5/303:312	NA	NA
46	HL_4V8Z_046 ➜	1/B5/357:362	NA	NA
47	HL_4V8Z_047 ➜	1/B5/382:387	NA	NA
48	HL_4V8Z_048 ➜	1/B5/543:548	NA	NA
49	HL_4V8Z_049 ➜	1/B5/599:604	NA	NA
50	HL_4V8Z_050 ➜	1/B5/640:649	NA	NA
51	HL_4V8Z_051 ➜	1/B5/686:694	NA	NA
52	HL_4V8Z_052 ➜	1/B5/707:712	NA	NA
53	HL_4V8Z_053 ➜	1/B5/732:737	NA	NA
54	HL_4V8Z_054 ➜	1/B5/763:768	NA	NA
55	HL_4V8Z_055 ➜	1/B5/844:849	NA	NA
56	HL_4V8Z_056 ➜	1/B5/876:885	NA	NA
57	HL_4V8Z_057 ➜	1/B5/910:918	NA	NA
58	HL_4V8Z_058 ➜	1/B5/958:963	NA	NA
59	HL_4V8Z_059 ➜	1/B5/1023:1029	NA	NA
60	HL_4V8Z_060 ➜	1/B5/1076:1083	NA	NA
61	HL_4V8Z_061 ➜	1/B5/1126:1132	NA	NA
62	HL_4V8Z_062 ➜	1/B5/1148:1155	NA	NA
63	HL_4V8Z_063 ➜	1/B5/1239:1249	NA	NA
64	HL_4V8Z_064 ➜	1/B5/1262:1277	NA	NA
65	HL_4V8Z_065 ➜	1/B5/1347:1357	NA	NA
66	HL_4V8Z_066 ➜	1/B5/1403:1408	NA	NA
67	HL_4V8Z_067 ➜	1/B5/1462:1470	NA	NA
68	HL_4V8Z_068 ➜	1/B5/1506:1512	NA	NA
69	HL_4V8Z_069 ➜	1/B5/1544:1549	NA	NA
70	HL_4V8Z_070 ➜	1/B5/1562:1577	NA	NA
71	HL_4V8Z_071 ➜	1/B5/1599:1608	NA	NA
72	HL_4V8Z_072 ➜	1/B5/1634:1639	NA	NA
73	HL_4V8Z_073 ➜	1/B5/1680:1688	NA	NA
74	HL_4V8Z_074 ➜	1/B5/1719:1725	NA	NA
75	HL_4V8Z_075 ➜	1/B5/1760:1765	NA	NA
76	HL_4V8Z_076 ➜	1/B5/1792:1796	NA	NA
77	HL_4V8Z_077 ➜	1/B5/1844:1851	NA	NA
78	HL_4V8Z_078 ➜	1/B5/1862:1868	NA	NA
79	HL_4V8Z_079 ➜	1/B5/1923:1928	NA	NA
80	HL_4V8Z_081 ➜	1/B5/2110:2114	NA	NA
81	HL_4V8Z_082 ➜	1/B5/2135:2145	NA	NA
82	HL_4V8Z_083 ➜	1/B5/2164:2170	NA	NA
83	HL_4V8Z_084 ➜	1/B5/2220:2225	NA	NA
84	HL_4V8Z_085 ➜	1/B5/2253:2263	NA	NA
85	HL_4V8Z_086 ➜	1/B5/2292:2300	NA	NA
86	HL_4V8Z_087 ➜	1/B5/2369:2378	NA	NA
87	HL_4V8Z_089 ➜	1/B5/2534:2545	NA	NA
88	HL_4V8Z_090 ➜	1/B5/2568:2573	NA	NA
89	HL_4V8Z_091 ➜	1/B5/2616:2624	NA	NA
90	HL_4V8Z_092 ➜	1/B5/2633:2645	NA	NA
91	HL_4V8Z_093 ➜	1/B5/2673:2681	NA	NA
92	HL_4V8Z_094 ➜	1/B5/2693:2700	NA	NA
93	HL_4V8Z_095 ➜	1/B5/2724:2732	NA	NA
94	HL_4V8Z_096 ➜	1/B5/2744:2749	NA	NA
95	HL_4V8Z_097 ➜	1/B5/2776:2784	NA	NA
96	HL_4V8Z_098 ➜	1/B5/2840:2848	NA	NA
97	HL_4V8Z_099 ➜	1/B5/2897:2904	NA	NA
98	HL_4V8Z_100 ➜	1/B5/2920:2926	NA	NA
99	HL_4V8Z_101 ➜	1/B5/2963:2968	NA	NA
100	HL_4V8Z_102 ➜	1/B5/3025:3030	NA	NA
101	HL_4V8Z_103 ➜	1/B5/3068:3073	NA	NA
102	HL_4V8Z_104 ➜	1/B5/3110:3124	NA	NA
103	HL_4V8Z_105 ➜	1/B5/3194:3197	NA	NA
104	HL_4V8Z_106 ➜	1/B5/3240:3247	NA	NA
105	HL_4V8Z_107 ➜	1/B5/3303:3311	NA	NA
106	HL_4V8Z_108 ➜	1/B5/3350:3353	NA	NA
107	HL_4V8Z_109 ➜	1/B7/36:41	NA	NA
108	HL_4V8Z_110 ➜	1/B7/88:93	NA	NA
109	HL_4V8Z_111 ➜	1/B8/69:89	NA	NA
110	HL_4V8Z_112 ➜	1/B8/108:114	NA	NA
111	HL_4V8Z_113 ➜	1/B8/124:129	NA	NA
112	HL_4V8Z_114 ➜	1/CW/13:22	NA	NA
113	HL_4V8Z_115 ➜	1/CW/31:39	NA	NA
114	HL_4V8Z_116 ➜	1/CW/53:61	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_4V8Z_080 ➜	missing nts	NA
2	HL_4V8Z_088 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_4V8Z_001 ➜	1/B2/24:26,1/B2/600:601	NA	NA
2	IL_4V8Z_002 ➜	1/B2/35:37,1/B2/471:473	NA	NA
3	IL_4V8Z_003 ➜	1/B2/37:41,1/B2/466:471	NA	NA
4	IL_4V8Z_004 ➜	1/B2/42:48,1/B2/431:433	NA	NA
5	IL_4V8Z_005 ➜	1/B2/50:52,1/B2/428:429	NA	NA
6	IL_4V8Z_006 ➜	1/B2/58:63,1/B2/87:89	NA	NA
7	IL_4V8Z_007 ➜	1/B2/64:69,1/B2/82:86	NA	NA
8	IL_4V8Z_008 ➜	1/B2/109:112,1/B2/302:305	NA	NA
9	IL_4V8Z_009 ➜	1/B2/113:116,1/B2/300:301	NA	NA
10	IL_4V8Z_010 ➜	1/B2/117:122,1/B2/295:299	NA	NA
11	IL_4V8Z_011 ➜	1/B2/143:149,1/B2/165:172	NA	NA
12	IL_4V8Z_012 ➜	1/B2/150:152,1/B2/162:164	NA	NA
13	IL_4V8Z_013 ➜	1/B2/186:189,1/B2/196:199	NA	NA
14	IL_4V8Z_014 ➜	1/B2/204:206,1/B2/259:263	NA	NA
15	IL_4V8Z_015 ➜	1/B2/206:208,1/B2/257:259	NA	NA
16	IL_4V8Z_017 ➜	1/B2/265:267,1/B2/288:289	NA	NA
17	IL_4V8Z_018 ➜	1/B2/270:273,1/B2/283:285	NA	NA
18	IL_4V8Z_019 ➜	1/B2/275:276,1/B2/279:281	NA	NA
19	IL_4V8Z_020 ➜	1/B2/311:316,1/B2/348:355	NA	NA
20	IL_4V8Z_021 ➜	1/B2/318:323,1/B2/345:346	NA	NA
21	IL_4V8Z_022 ➜	1/B2/363:365,1/B2/376:381	NA	NA
22	IL_4V8Z_023 ➜	1/B2/389:391,1/B2/406:408	NA	NA
23	IL_4V8Z_024 ➜	1/B2/411:413,1/B2/420:422	NA	NA
24	IL_4V8Z_025 ➜	1/B2/439:441,1/B2/463:464	NA	NA
25	IL_4V8Z_026 ➜	1/B2/443:448,1/B2/458:461	NA	NA
26	IL_4V8Z_027 ➜	1/B2/480:485,1/B2/502:508	NA	NA
27	IL_4V8Z_028 ➜	1/B2/517:520,1/B2/532:535	NA	NA
28	IL_4V8Z_029 ➜	1/B2/550:557,1/B2/587:588	NA	NA
29	IL_4V8Z_030 ➜	1/B2/557:559,1/B2/586:587	NA	NA
30	IL_4V8Z_031 ➜	1/B2/562:568,1/B2/575:583	NA	NA
31	IL_4V8Z_032 ➜	1/B2/616:622,1/B2/1104:1105	NA	NA
32	IL_4V8Z_033 ➜	1/B2/624:626,1/B2/973:975	NA	NA
33	IL_4V8Z_034 ➜	1/B2/627:631,1/B2/968:972	NA	NA
34	IL_4V8Z_035 ➜	1/B2/646:648,1/B2/686:688	NA	NA
35	IL_4V8Z_037 ➜	1/B2/652:658,1/B2/676:682	NA	NA
36	IL_4V8Z_039 ➜	1/B2/746:747,1/B2/802:805	NA	NA
37	IL_4V8Z_040 ➜	1/B2/748:750,1/B2/799:801	NA	NA
38	IL_4V8Z_041 ➜	1/B2/751:760,1/B2/790:798	NA	NA
39	IL_4V8Z_042 ➜	1/B2/817:824,1/B2/848:854	NA	NA
40	IL_4V8Z_043 ➜	1/B2/825:827,1/B2/845:847	NA	NA
41	IL_4V8Z_044 ➜	1/B2/865:866,1/B2/962:965	NA	NA
42	IL_4V8Z_045 ➜	1/B2/867:870,1/B2/957:961	NA	NA
43	IL_4V8Z_046 ➜	1/B2/871:874,1/B2/953:956	NA	NA
44	IL_4V8Z_047 ➜	1/B2/874:878,1/B2/950:953	NA	NA
45	IL_4V8Z_048 ➜	1/B2/885:888,1/B2/924:927	NA	NA
46	IL_4V8Z_049 ➜	1/B2/893:899,1/B2/910:919	NA	NA
47	IL_4V8Z_050 ➜	1/B2/985:990,1/B2/1014:1016	NA	NA
48	IL_4V8Z_051 ➜	1/B2/990:994,1/B2/1010:1014	NA	NA
49	IL_4V8Z_052 ➜	1/B2/1034:1036,1/B2/1095:1101	NA	NA
50	IL_4V8Z_053 ➜	1/B2/1041:1044,1/B2/1074:1077	NA	NA
51	IL_4V8Z_054 ➜	1/B2/1051:1053,1/B2/1066:1067	NA	NA
52	IL_4V8Z_055 ➜	1/B2/1111:1118,1/B2/1129:1134	NA	NA
53	IL_4V8Z_056 ➜	1/B2/1146:1147,1/B2/1630:1632	NA	NA
54	IL_4V8Z_057 ➜	1/B2/1149:1151,1/B2/1627:1628	NA	NA
55	IL_4V8Z_058 ➜	1/B2/1157:1160,1/B2/1617:1621	NA	NA
56	IL_4V8Z_059 ➜	1/B2/1173:1175,1/B2/1464:1466	NA	NA
57	IL_4V8Z_060 ➜	1/B2/1178:1179,1/B2/1459:1461	NA	NA
58	IL_4V8Z_061 ➜	1/B2/1213:1215,1/B2/1448:1450	NA	NA
59	IL_4V8Z_062 ➜	1/B2/1223:1230,1/B2/1257:1260	NA	NA
60	IL_4V8Z_063 ➜	1/B2/1230:1233,1/B2/1252:1257	NA	NA
61	IL_4V8Z_064 ➜	1/B2/1234:1236,1/B2/1249:1251	NA	NA
62	IL_4V8Z_065 ➜	1/B2/1268:1270,1/B2/1440:1441	NA	NA
63	IL_4V8Z_066 ➜	1/B2/1272:1278,1/B2/1430:1438	NA	NA
64	IL_4V8Z_067 ➜	1/B2/1280:1281,1/B2/1426:1428	NA	NA
65	IL_4V8Z_068 ➜	1/B2/1290:1292,1/B2/1323:1325	NA	NA
66	IL_4V8Z_069 ➜	1/B2/1306:1308,1/B2/1317:1318	NA	NA
67	IL_4V8Z_070 ➜	1/B2/1339:1342,1/B2/1383:1385	NA	NA
68	IL_4V8Z_071 ➜	1/B2/1345:1348,1/B2/1377:1380	NA	NA
69	IL_4V8Z_072 ➜	1/B2/1352:1354,1/B2/1369:1373	NA	NA
70	IL_4V8Z_073 ➜	1/B2/1389:1391,1/B2/1407:1412	NA	NA
71	IL_4V8Z_074 ➜	1/B2/1480:1487,1/B2/1519:1527	NA	NA
72	IL_4V8Z_075 ➜	1/B2/1488:1494,1/B2/1513:1518	NA	NA
73	IL_4V8Z_076 ➜	1/B2/1495:1498,1/B2/1509:1512	NA	NA
74	IL_4V8Z_077 ➜	1/B2/1540:1545,1/B2/1566:1571	NA	NA
75	IL_4V8Z_078 ➜	1/B2/1636:1638,1/B2/1764:1767	NA	NA
76	IL_4V8Z_079 ➜	1/B2/1638:1641,1/B2/1760:1764	NA	NA
77	IL_4V8Z_080 ➜	1/B2/1642:1644,1/B2/1757:1759	NA	NA
78	IL_4V8Z_081 ➜	1/B2/1644:1647,1/B2/1753:1757	NA	NA
79	IL_4V8Z_082 ➜	1/B2/1650:1652,1/B2/1748:1750	NA	NA
80	IL_4V8Z_083 ➜	1/B2/1653:1656,1/B2/1744:1747	NA	NA
81	IL_4V8Z_084 ➜	1/B2/1656:1658,1/B2/1743:1744	NA	NA
82	IL_4V8Z_085 ➜	1/B2/1665:1667,1/B2/1734:1736	NA	NA
83	IL_4V8Z_086 ➜	1/B2/1669:1672,1/B2/1729:1732	NA	NA
84	IL_4V8Z_087 ➜	1/B2/1672:1674,1/B2/1727:1729	NA	NA
85	IL_4V8Z_088 ➜	1/B2/1675:1678,1/B2/1723:1726	NA	NA
86	IL_4V8Z_089 ➜	1/B2/1678:1682,1/B2/1719:1723	NA	NA
87	IL_4V8Z_090 ➜	1/B2/1683:1685,1/B2/1716:1718	NA	NA
88	IL_4V8Z_091 ➜	1/B2/1687:1690,1/B2/1711:1714	NA	NA
89	IL_4V8Z_093 ➜	1/B5/7:8,1/B8/150:152	NA	NA
90	IL_4V8Z_094 ➜	1/B5/13:15,1/B8/144:145	NA	NA
91	IL_4V8Z_095 ➜	1/B5/27:28,1/B5/56:58	NA	NA
92	IL_4V8Z_096 ➜	1/B5/31:38,1/B5/45:53	NA	NA
93	IL_4V8Z_097 ➜	1/B5/82:89,1/B5/97:103	NA	NA
94	IL_4V8Z_098 ➜	1/B5/123:124,1/B5/144:149	NA	NA
95	IL_4V8Z_099 ➜	1/B5/125:127,1/B5/141:143	NA	NA
96	IL_4V8Z_100 ➜	1/B5/163:165,1/B5/257:258	NA	NA
97	IL_4V8Z_102 ➜	1/B5/169:174,1/B5/244:253	NA	NA
98	IL_4V8Z_103 ➜	1/B5/177:179,1/B5/237:241	NA	NA
99	IL_4V8Z_104 ➜	1/B5/189:191,1/B5/204:205	NA	NA
100	IL_4V8Z_105 ➜	1/B5/337:339,1/B8/25:26	NA	NA
101	IL_4V8Z_106 ➜	1/B5/376:379,1/B5/390:403	NA	NA
102	IL_4V8Z_107 ➜	1/B5/404:410,1/B8/13:19	NA	NA
103	IL_4V8Z_108 ➜	1/B5/429:431,1/B5/628:630	NA	NA
104	IL_4V8Z_110 ➜	1/B5/512:513,1/B5/577:579	NA	NA
105	IL_4V8Z_111 ➜	1/B5/517:525,1/B5/567:573	NA	NA
106	IL_4V8Z_112 ➜	1/B5/531:538,1/B5/553:561	NA	NA
107	IL_4V8Z_113 ➜	1/B5/668:670,1/B5/792:794	NA	NA
108	IL_4V8Z_114 ➜	1/B5/680:684,1/B5/696:700	NA	NA
109	IL_4V8Z_115 ➜	1/B5/725:728,1/B5/741:745	NA	NA
110	IL_4V8Z_116 ➜	1/B5/752:753,1/B5/779:781	NA	NA
111	IL_4V8Z_117 ➜	1/B5/755:756,1/B5/775:777	NA	NA
112	IL_4V8Z_118 ➜	1/B5/758:763,1/B5/768:773	NA	NA
113	IL_4V8Z_119 ➜	1/B5/803:805,1/B5/938:940	NA	NA
114	IL_4V8Z_120 ➜	1/B5/805:809,1/B5/931:938	NA	NA
115	IL_4V8Z_121 ➜	1/B5/828:829,1/B5/895:897	NA	NA
116	IL_4V8Z_122 ➜	1/B5/833:834,1/B5/859:861	NA	NA
117	IL_4V8Z_123 ➜	1/B5/834:838,1/B5/855:859	NA	NA
118	IL_4V8Z_124 ➜	1/B5/869:872,1/B5/888:890	NA	NA
119	IL_4V8Z_125 ➜	1/B5/873:875,1/B5/886:887	NA	NA
120	IL_4V8Z_126 ➜	1/B5/907:909,1/B5/919:923	NA	NA
121	IL_4V8Z_127 ➜	1/B5/954:956,1/B5/965:967	NA	NA
122	IL_4V8Z_128 ➜	1/B5/969:970,1/B5/1111:1113	NA	NA
123	IL_4V8Z_129 ➜	1/B5/977:982,1/B5/1101:1104	NA	NA
124	IL_4V8Z_130 ➜	1/B5/983:985,1/B5/1099:1100	NA	NA
125	IL_4V8Z_131 ➜	1/B5/991:997,1/B5/1052:1058	NA	NA
126	IL_4V8Z_132 ➜	1/B5/997:998,1/B5/1050:1052	NA	NA
127	IL_4V8Z_133 ➜	1/B5/999:1004,1/B5/1046:1049	NA	NA
128	IL_4V8Z_134 ➜	1/B5/1006:1009,1/B5/1041:1044	NA	NA
129	IL_4V8Z_135 ➜	1/B5/1009:1011,1/B5/1039:1041	NA	NA
130	IL_4V8Z_136 ➜	1/B5/1013:1015,1/B5/1035:1037	NA	NA
131	IL_4V8Z_137 ➜	1/B5/1015:1018,1/B5/1034:1035	NA	NA
132	IL_4V8Z_138 ➜	1/B5/1018:1020,1/B5/1032:1034	NA	NA
133	IL_4V8Z_140 ➜	1/B5/1069:1071,1/B5/1087:1089	NA	NA
134	IL_4V8Z_141 ➜	1/B5/1074:1076,1/B5/1083:1084	NA	NA
135	IL_4V8Z_142 ➜	1/B5/1120:1122,1/B5/1136:1138	NA	NA
136	IL_4V8Z_143 ➜	1/B5/1123:1125,1/B5/1133:1135	NA	NA
137	IL_4V8Z_144 ➜	1/B5/1167:1171,1/B5/1328:1332	NA	NA
138	IL_4V8Z_145 ➜	1/B5/1173:1180,1/B5/1325:1326	NA	NA
139	IL_4V8Z_146 ➜	1/B5/1180:1182,1/B5/1324:1325	NA	NA
140	IL_4V8Z_147 ➜	1/B5/1187:1194,1/B5/1314:1319	NA	NA
141	IL_4V8Z_148 ➜	1/B5/1194:1205,1/B5/1299:1314	NA	NA
142	IL_4V8Z_149 ➜	1/B5/1207:1209,1/B5/1296:1297	NA	NA
143	IL_4V8Z_150 ➜	1/B5/1234:1238,1/B5/1250:1254	NA	NA
144	IL_4V8Z_151 ➜	1/B5/1376:1378,1/B5/1428:1431	NA	NA
145	IL_4V8Z_152 ➜	1/B5/1385:1387,1/B5/1420:1421	NA	NA
146	IL_4V8Z_153 ➜	1/B5/1388:1395,1/B5/1415:1419	NA	NA
147	IL_4V8Z_154 ➜	1/B5/1398:1400,1/B5/1411:1412	NA	NA
148	IL_4V8Z_155 ➜	1/B5/1444:1450,1/B5/2354:2359	NA	NA
149	IL_4V8Z_156 ➜	1/B5/1492:1495,1/B5/1835:1836	NA	NA
150	IL_4V8Z_157 ➜	1/B5/1500:1505,1/B5/1513:1516	NA	NA
151	IL_4V8Z_158 ➜	1/B5/1532:1536,1/B5/1585:1590	NA	NA
152	IL_4V8Z_160 ➜	1/B5/1618:1621,1/B5/1824:1826	NA	NA
153	IL_4V8Z_161 ➜	1/B5/1623:1625,1/B5/1818:1822	NA	NA
154	IL_4V8Z_162 ➜	1/B5/1625:1627,1/B5/1816:1818	NA	NA
155	IL_4V8Z_163 ➜	1/B5/1627:1631,1/B5/1811:1816	NA	NA
156	IL_4V8Z_164 ➜	1/B5/1645:1649,1/B5/1806:1810	NA	NA
157	IL_4V8Z_165 ➜	1/B5/1661:1663,1/B5/1786:1788	NA	NA
158	IL_4V8Z_166 ➜	1/B5/1669:1670,1/B5/1778:1780	NA	NA
159	IL_4V8Z_167 ➜	1/B5/1670:1671,1/B5/1776:1778	NA	NA
160	IL_4V8Z_168 ➜	1/B5/1694:1698,1/B5/1747:1752	NA	NA
161	IL_4V8Z_169 ➜	1/B5/1702:1707,1/B5/1737:1743	NA	NA
162	IL_4V8Z_170 ➜	1/B5/1711:1717,1/B5/1727:1733	NA	NA
163	IL_4V8Z_171 ➜	1/B5/1883:1889,1/B5/2346:2349	NA	NA
164	IL_4V8Z_172 ➜	1/B5/1895:1897,1/B5/2338:2340	NA	NA
165	IL_4V8Z_173 ➜	1/B5/1898:1901,1/B5/2336:2337	NA	NA
166	IL_4V8Z_174 ➜	1/B5/1901:1906,1/B5/2333:2336	NA	NA
167	IL_4V8Z_175 ➜	1/B5/1918:1923,1/B5/1928:1934	NA	NA
168	IL_4V8Z_176 ➜	1/B5/1940:1942,1/B5/2106:2108	NA	NA
169	IL_4V8Z_177 ➜	1/B5/1947:1948,1/B5/2098:2101	NA	NA
170	IL_4V8Z_178 ➜	1/B5/2128:2129,1/B5/2323:2325	NA	NA
171	IL_4V8Z_179 ➜	1/B5/2156:2161,1/B5/2173:2180	NA	NA
172	IL_4V8Z_180 ➜	1/B5/2196:2199,1/B5/2245:2246	NA	NA
173	IL_4V8Z_181 ➜	1/B5/2200:2201,1/B5/2241:2244	NA	NA
174	IL_4V8Z_182 ➜	1/B5/2204:2206,1/B5/2237:2238	NA	NA
175	IL_4V8Z_183 ➜	1/B5/2276:2277,1/B5/2307:2310	NA	NA
176	IL_4V8Z_184 ➜	1/B5/2277:2288,1/B5/2304:2307	NA	NA
177	IL_4V8Z_185 ➜	1/B5/2391:2394,1/B5/2986:2988	NA	NA
178	IL_4V8Z_186 ➜	1/B5/2396:2398,1/B5/2981:2984	NA	NA
179	IL_4V8Z_187 ➜	1/B5/2409:2411,1/B5/2811:2812	NA	NA
180	IL_4V8Z_188 ➜	1/B5/2412:2413,1/B5/2807:2810	NA	NA
181	IL_4V8Z_189 ➜	1/B5/2423:2425,1/B5/2604:2607	NA	NA
182	IL_4V8Z_190 ➜	1/B5/2520:2526,1/B5/2584:2587	NA	NA
183	IL_4V8Z_192 ➜	1/B5/2614:2615,1/B5/2625:2627	NA	NA
184	IL_4V8Z_193 ➜	1/B5/2666:2668,1/B5/2686:2690	NA	NA
185	IL_4V8Z_194 ➜	1/B5/2714:2716,1/B5/2740:2741	NA	NA
186	IL_4V8Z_195 ➜	1/B5/2718:2721,1/B5/2735:2738	NA	NA
187	IL_4V8Z_196 ➜	1/B5/2770:2773,1/B5/2787:2788	NA	NA
188	IL_4V8Z_197 ➜	1/B5/2823:2824,1/B5/2865:2867	NA	NA
189	IL_4V8Z_198 ➜	1/B5/2824:2826,1/B5/2863:2865	NA	NA
190	IL_4V8Z_199 ➜	1/B5/2826:2828,1/B5/2862:2863	NA	NA
191	IL_4V8Z_200 ➜	1/B5/2828:2830,1/B5/2858:2862	NA	NA
192	IL_4V8Z_201 ➜	1/B5/2835:2839,1/B5/2849:2853	NA	NA
193	IL_4V8Z_202 ➜	1/B5/2876:2877,1/B5/2949:2951	NA	NA
194	IL_4V8Z_203 ➜	1/B5/2879:2881,1/B5/2943:2947	NA	NA
195	IL_4V8Z_204 ➜	1/B5/2881:2882,1/B5/2940:2943	NA	NA
196	IL_4V8Z_205 ➜	1/B5/2889:2891,1/B5/2912:2914	NA	NA
197	IL_4V8Z_206 ➜	1/B5/2891:2892,1/B5/2909:2912	NA	NA
198	IL_4V8Z_207 ➜	1/B5/2918:2920,1/B5/2926:2928	NA	NA
199	IL_4V8Z_208 ➜	1/B5/2960:2961,1/B5/2970:2972	NA	NA
200	IL_4V8Z_209 ➜	1/B5/3004:3007,1/B5/3139:3144	NA	NA
201	IL_4V8Z_210 ➜	1/B5/3012:3014,1/B5/3040:3042	NA	NA
202	IL_4V8Z_211 ➜	1/B5/3018:3025,1/B5/3030:3036	NA	NA
203	IL_4V8Z_212 ➜	1/B5/3047:3051,1/B5/3091:3094	NA	NA
204	IL_4V8Z_213 ➜	1/B5/3054:3059,1/B5/3084:3088	NA	NA
205	IL_4V8Z_214 ➜	1/B5/3063:3064,1/B5/3077:3080	NA	NA
206	IL_4V8Z_215 ➜	1/B5/3103:3107,1/B5/3127:3131	NA	NA
207	IL_4V8Z_216 ➜	1/B5/3161:3166,1/B5/3284:3289	NA	NA
208	IL_4V8Z_217 ➜	1/B5/3168:3170,1/B5/3280:3282	NA	NA
209	IL_4V8Z_218 ➜	1/B5/3177:3179,1/B5/3210:3211	NA	NA
210	IL_4V8Z_219 ➜	1/B5/3179:3188,1/B5/3204:3210	NA	NA
211	IL_4V8Z_220 ➜	1/B5/3193:3194,1/B5/3197:3199	NA	NA
212	IL_4V8Z_221 ➜	1/B5/3225:3229,1/B5/3258:3260	NA	NA
213	IL_4V8Z_222 ➜	1/B5/3233:3235,1/B5/3252:3254	NA	NA
214	IL_4V8Z_223 ➜	1/B5/3235:3238,1/B5/3249:3252	NA	NA
215	IL_4V8Z_224 ➜	1/B5/3300:3303,1/B5/3311:3314	NA	NA
216	IL_4V8Z_225 ➜	1/B5/3318:3320,1/B5/3387:3388	NA	NA
217	IL_4V8Z_226 ➜	1/B5/3324:3325,1/B5/3381:3383	NA	NA
218	IL_4V8Z_227 ➜	1/B5/3328:3330,1/B5/3373:3378	NA	NA
219	IL_4V8Z_228 ➜	1/B5/3332:3337,1/B5/3367:3371	NA	NA
220	IL_4V8Z_229 ➜	1/B5/3340:3342,1/B5/3363:3364	NA	NA
221	IL_4V8Z_230 ➜	1/B5/3342:3345,1/B5/3360:3363	NA	NA
222	IL_4V8Z_231 ➜	1/B5/3349:3350,1/B5/3353:3356	NA	NA
223	IL_4V8Z_232 ➜	1/B7/15:16,1/B7/63:65	NA	NA
224	IL_4V8Z_233 ➜	1/B7/21:27,1/B7/53:58	NA	NA
225	IL_4V8Z_234 ➜	1/B7/28:29,1/B7/49:52	NA	NA
226	IL_4V8Z_235 ➜	1/B7/29:30,1/B7/47:49	NA	NA
227	IL_4V8Z_236 ➜	1/B7/32:36,1/B7/41:45	NA	NA
228	IL_4V8Z_237 ➜	1/B7/72:80,1/B7/100:106	NA	NA
229	IL_4V8Z_238 ➜	1/B7/84:87,1/B7/94:96	NA	NA
230	IL_4V8Z_239 ➜	1/B8/44:64,1/B8/96:100	NA	NA
231	IL_4V8Z_240 ➜	1/B8/64:66,1/B8/93:96	NA	NA
232	IL_4V8Z_241 ➜	1/B8/68:69,1/B8/89:91	NA	NA
233	IL_4V8Z_242 ➜	1/CW/50:52,1/CW/62:64	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_4V8Z_016 ➜	complementary	NA
2	IL_4V8Z_036 ➜	complementary	NA
3	IL_4V8Z_038 ➜	complementary	NA
4	IL_4V8Z_092 ➜	complementary	NA
5	IL_4V8Z_101 ➜	complementary	NA
6	IL_4V8Z_109 ➜	missing nts	NA
7	IL_4V8Z_139 ➜	complementary	NA
8	IL_4V8Z_159 ➜	complementary	NA
9	IL_4V8Z_191 ➜	complementary	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_4V8Z_001 ➜	1/B2/760:763,1/B2/773:775,1/B2/785:790	NA	NA
2	J3_4V8Z_002 ➜	1/B2/881:884,1/B2/928:936,1/B2/943:947	NA	NA
3	J3_4V8Z_003 ➜	1/B2/1037:1039,1/B2/1079:1083,1/B2/1090:1094	NA	NA
4	J3_4V8Z_004 ➜	1/B2/1161:1164,1/B2/1581:1587,1/B2/1609:1616	NA	NA
5	J3_4V8Z_005 ➜	1/B2/1168:1171,1/B2/1468:1470,1/B2/1574:1577	NA	NA
6	J3_4V8Z_006 ➜	1/B2/1180:1187,1/B2/1198:1209,1/B2/1454:1458	NA	NA
7	J3_4V8Z_007 ➜	1/B2/1215:1220,1/B2/1263:1267,1/B2/1442:1448	NA	NA
8	J3_4V8Z_008 ➜	1/B2/1283:1288,1/B2/1327:1332,1/B2/1419:1424	NA	NA
9	J3_4V8Z_009 ➜	1/B2/1336:1338,1/B2/1386:1389,1/B2/1412:1415	NA	NA
10	J3_4V8Z_010 ➜	1/B2/1470:1474,1/B2/1533:1540,1/B2/1571:1574	NA	NA
11	J3_4V8Z_011 ➜	1/B5/113:123,1/B5/149:158,1/B5/263:267	NA	NA
12	J3_4V8Z_012 ➜	1/B5/814:820,1/B5/905:907,1/B5/923:926	NA	NA
13	J3_4V8Z_013 ➜	1/B5/829:831,1/B5/863:867,1/B5/892:895	NA	NA
14	J3_4V8Z_014 ➜	1/B5/1479:1485,1/B5/1857:1859,1/B5/1871:1874	NA	NA
15	J3_4V8Z_015 ➜	1/B5/1488:1491,1/B5/1837:1843,1/B5/1852:1854	NA	NA
16	J3_4V8Z_016 ➜	1/B5/2432:2435,1/B5/2512:2517,1/B5/2590:2597	NA	NA
17	J3_4V8Z_017 ➜	1/B5/2529:2532,1/B5/2547:2563,1/B5/2578:2581	NA	NA
18	J3_4V8Z_018 ➜	1/B5/2664:2666,1/B5/2690:2692,1/B5/2701:2706	NA	NA
19	J3_4V8Z_019 ➜	1/B5/2886:2889,1/B5/2914:2916,1/B5/2930:2936	NA	NA
20	J3_4V8Z_020 ➜	1/B5/3298:3300,1/B5/3314:3318,1/B5/3388:3390	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

4V8Z Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops