5NRG | Motifs

67 Hairpin loops
96 Internal loops
14 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	HL_5NRG_001 ➜	1/X/59:68	NA	NA
2	HL_5NRG_002 ➜	1/X/87:95	NA	NA
3	HL_5NRG_003 ➜	1/X/122:127	NA	NA
4	HL_5NRG_004 ➜	1/X/135:144	NA	NA
5	HL_5NRG_006 ➜	1/X/197:204	NA	NA
6	HL_5NRG_007 ➜	1/X/228:233	NA	NA
7	HL_5NRG_008 ➜	1/X/249:255	NA	NA
8	HL_5NRG_009 ➜	1/X/282:289	NA	NA
9	HL_5NRG_010 ➜	1/X/348:355	NA	NA
10	HL_5NRG_011 ➜	1/X/362:366	NA	NA
11	HL_5NRG_012 ➜	1/X/370:378	NA	NA
12	HL_5NRG_013 ➜	1/X/427:439	NA	NA
13	HL_5NRG_014 ➜	1/X/456:463	NA	NA
14	HL_5NRG_015 ➜	1/X/508:513	NA	NA
15	HL_5NRG_016 ➜	1/X/533:538	NA	NA
16	HL_5NRG_017 ➜	1/X/587:594	NA	NA
17	HL_5NRG_018 ➜	1/X/609:618	NA	NA
18	HL_5NRG_019 ➜	1/X/654:662	NA	NA
19	HL_5NRG_020 ➜	1/X/674:679	NA	NA
20	HL_5NRG_021 ➜	1/X/685:693	NA	NA
21	HL_5NRG_023 ➜	1/X/789:798	NA	NA
22	HL_5NRG_024 ➜	1/X/823:831	NA	NA
23	HL_5NRG_025 ➜	1/X/871:876	NA	NA
24	HL_5NRG_027 ➜	1/X/999:1006	NA	NA
25	HL_5NRG_028 ➜	1/X/1022:1029	NA	NA
26	HL_5NRG_031 ➜	1/X/1260:1265	NA	NA
27	HL_5NRG_032 ➜	1/X/1318:1326	NA	NA
28	HL_5NRG_033 ➜	1/X/1361:1367	NA	NA
29	HL_5NRG_034 ➜	1/X/1400:1405	NA	NA
30	HL_5NRG_035 ➜	1/X/1426:1435	NA	NA
31	HL_5NRG_037 ➜	1/X/1612:1615	NA	NA
32	HL_5NRG_038 ➜	1/X/1656:1663	NA	NA
33	HL_5NRG_039 ➜	1/X/1673:1681	NA	NA
34	HL_5NRG_040 ➜	1/X/1735:1740	NA	NA
35	HL_5NRG_041 ➜	1/X/1756:1773	NA	NA
36	HL_5NRG_042 ➜	1/X/1779:1783	NA	NA
37	HL_5NRG_043 ➜	1/X/1804:1814	NA	NA
38	HL_5NRG_046 ➜	1/X/1976:1984	NA	NA
39	HL_5NRG_047 ➜	1/X/2054:2063	NA	NA
40	HL_5NRG_049 ➜	1/X/2236:2242	NA	NA
41	HL_5NRG_050 ➜	1/X/2275:2283	NA	NA
42	HL_5NRG_051 ➜	1/X/2291:2303	NA	NA
43	HL_5NRG_053 ➜	1/X/2351:2358	NA	NA
44	HL_5NRG_054 ➜	1/X/2382:2389	NA	NA
45	HL_5NRG_055 ➜	1/X/2401:2406	NA	NA
46	HL_5NRG_056 ➜	1/X/2431:2440	NA	NA
47	HL_5NRG_058 ➜	1/X/2555:2562	NA	NA
48	HL_5NRG_059 ➜	1/X/2578:2584	NA	NA
49	HL_5NRG_060 ➜	1/X/2621:2626	NA	NA
50	HL_5NRG_061 ➜	1/X/2685:2690	NA	NA
51	HL_5NRG_062 ➜	1/X/2728:2733	NA	NA
52	HL_5NRG_063 ➜	1/X/2772:2786	NA	NA
53	HL_5NRG_065 ➜	1/X/2839:2847	NA	NA
54	HL_5NRG_066 ➜	1/X/2874:2883	NA	NA
55	HL_5NRG_067 ➜	1/Y/32:46	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_5NRG_005 ➜	missing nts	NA
2	HL_5NRG_022 ➜	missing nts	NA
3	HL_5NRG_026 ➜	missing nts	NA
4	HL_5NRG_029 ➜	missing nts	NA
5	HL_5NRG_030 ➜	missing nts	NA
6	HL_5NRG_036 ➜	missing nts	NA
7	HL_5NRG_044 ➜	missing nts	NA
8	HL_5NRG_045 ➜	missing nts	NA
9	HL_5NRG_048 ➜	missing nts	NA
10	HL_5NRG_052 ➜	missing nts	NA
11	HL_5NRG_057 ➜	all high RSRZ	NA
12	HL_5NRG_064 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_5NRG_001 ➜	1/X/24:30,1/X/555:561	NA	NA
2	IL_5NRG_002 ➜	1/X/36:37,1/X/488:490	NA	NA
3	IL_5NRG_003 ➜	1/X/42:44,1/X/480:483	NA	NA
4	IL_5NRG_004 ➜	1/X/81:85,1/X/97:104	NA	NA
5	IL_5NRG_005 ➜	1/X/186:187,1/X/215:217	NA	NA
6	IL_5NRG_006 ➜	1/X/190:197,1/X/204:212	NA	NA
7	IL_5NRG_007 ➜	1/X/241:248,1/X/256:262	NA	NA
8	IL_5NRG_008 ➜	1/X/304:306,1/X/409:413	NA	NA
9	IL_5NRG_009 ➜	1/X/336:338,1/X/386:390	NA	NA
10	IL_5NRG_010 ➜	1/X/527:530,1/X/541:554	NA	NA
11	IL_5NRG_011 ➜	1/X/581:584,1/X/597:600	NA	NA
12	IL_5NRG_012 ➜	1/X/607:609,1/X/618:620	NA	NA
13	IL_5NRG_013 ➜	1/X/638:640,1/X/705:707	NA	NA
14	IL_5NRG_014 ➜	1/X/649:653,1/X/663:667	NA	NA
15	IL_5NRG_015 ➜	1/X/717:719,1/X/851:853	NA	NA
16	IL_5NRG_016 ➜	1/X/719:723,1/X/844:851	NA	NA
17	IL_5NRG_017 ➜	1/X/742:743,1/X/808:810	NA	NA
18	IL_5NRG_018 ➜	1/X/747:748,1/X/773:775	NA	NA
19	IL_5NRG_019 ➜	1/X/748:752,1/X/769:773	NA	NA
20	IL_5NRG_020 ➜	1/X/783:785,1/X/802:803	NA	NA
21	IL_5NRG_021 ➜	1/X/820:822,1/X/832:836	NA	NA
22	IL_5NRG_022 ➜	1/X/882:883,1/X/984:986	NA	NA
23	IL_5NRG_023 ➜	1/X/889:893,1/X/975:978	NA	NA
24	IL_5NRG_024 ➜	1/X/897:898,1/X/969:971	NA	NA
25	IL_5NRG_025 ➜	1/X/901:907,1/X/960:966	NA	NA
26	IL_5NRG_026 ➜	1/X/907:908,1/X/958:960	NA	NA
27	IL_5NRG_027 ➜	1/X/909:913,1/X/954:957	NA	NA
28	IL_5NRG_028 ➜	1/X/1038:1040,1/X/1203:1204	NA	NA
29	IL_5NRG_029 ➜	1/X/1042:1046,1/X/1197:1201	NA	NA
30	IL_5NRG_030 ➜	1/X/1048:1055,1/X/1194:1195	NA	NA
31	IL_5NRG_031 ➜	1/X/1055:1057,1/X/1193:1194	NA	NA
32	IL_5NRG_032 ➜	1/X/1062:1068,1/X/1184:1188	NA	NA
33	IL_5NRG_033 ➜	1/X/1068:1074,1/X/1168:1184	NA	NA
34	IL_5NRG_034 ➜	1/X/1075:1078,1/X/1165:1167	NA	NA
35	IL_5NRG_035 ➜	1/X/1081:1083,1/X/1160:1162	NA	NA
36	IL_5NRG_036 ➜	1/X/1235:1237,1/X/1285:1288	NA	NA
37	IL_5NRG_037 ➜	1/X/1243:1245,1/X/1277:1279	NA	NA
38	IL_5NRG_038 ➜	1/X/1246:1253,1/X/1272:1276	NA	NA
39	IL_5NRG_039 ➜	1/X/1257:1259,1/X/1266:1268	NA	NA
40	IL_5NRG_040 ➜	1/X/1300:1307,1/X/2038:2044	NA	NA
41	IL_5NRG_041 ➜	1/X/1347:1350,1/X/1647:1648	NA	NA
42	IL_5NRG_042 ➜	1/X/1356:1360,1/X/1368:1370	NA	NA
43	IL_5NRG_043 ➜	1/X/1388:1392,1/X/1413:1417	NA	NA
44	IL_5NRG_044 ➜	1/X/1394:1398,1/X/1407:1411	NA	NA
45	IL_5NRG_045 ➜	1/X/1461:1465,1/X/1624:1627	NA	NA
46	IL_5NRG_046 ➜	1/X/1475:1480,1/X/1604:1609	NA	NA
47	IL_5NRG_047 ➜	1/X/1481:1485,1/X/1598:1603	NA	NA
48	IL_5NRG_049 ➜	1/X/1695:1700,1/X/2031:2033	NA	NA
49	IL_5NRG_050 ➜	1/X/1707:1709,1/X/2022:2024	NA	NA
50	IL_5NRG_051 ➜	1/X/1710:1713,1/X/2020:2021	NA	NA
51	IL_5NRG_052 ➜	1/X/1713:1718,1/X/2017:2020	NA	NA
52	IL_5NRG_053 ➜	1/X/1729:1735,1/X/1740:1747	NA	NA
53	IL_5NRG_054 ➜	1/X/1797:1798,1/X/2007:2009	NA	NA
54	IL_5NRG_055 ➜	1/X/1825:1831,1/X/1840:1848	NA	NA
55	IL_5NRG_057 ➜	1/X/1868:1869,1/X/1925:1928	NA	NA
56	IL_5NRG_059 ➜	1/X/1878:1882,1/X/1914:1918	NA	NA
57	IL_5NRG_060 ➜	1/X/1882:1887,1/X/1909:1914	NA	NA
58	IL_5NRG_061 ➜	1/X/1891:1894,1/X/1901:1905	NA	NA
59	IL_5NRG_062 ➜	1/X/1960:1961,1/X/1991:1994	NA	NA
60	IL_5NRG_063 ➜	1/X/1961:1972,1/X/1988:1991	NA	NA
61	IL_5NRG_064 ➜	1/X/2077:2079,1/X/2644:2645	NA	NA
62	IL_5NRG_065 ➜	1/X/2081:2083,1/X/2639:2642	NA	NA
63	IL_5NRG_066 ➜	1/X/2094:2096,1/X/2469:2470	NA	NA
64	IL_5NRG_067 ➜	1/X/2097:2098,1/X/2465:2468	NA	NA
65	IL_5NRG_068 ➜	1/X/2108:2110,1/X/2263:2266	NA	NA
66	IL_5NRG_069 ➜	1/X/2111:2113,1/X/2260:2262	NA	NA
67	IL_5NRG_070 ➜	1/X/2229:2232,1/X/2246:2248	NA	NA
68	IL_5NRG_071 ➜	1/X/2324:2326,1/X/2344:2348	NA	NA
69	IL_5NRG_072 ➜	1/X/2377:2380,1/X/2391:2394	NA	NA
70	IL_5NRG_073 ➜	1/X/2428:2430,1/X/2441:2442	NA	NA
71	IL_5NRG_074 ➜	1/X/2480:2481,1/X/2525:2527	NA	NA
72	IL_5NRG_075 ➜	1/X/2481:2482,1/X/2523:2525	NA	NA
73	IL_5NRG_076 ➜	1/X/2484:2486,1/X/2520:2521	NA	NA
74	IL_5NRG_077 ➜	1/X/2486:2488,1/X/2516:2520	NA	NA
75	IL_5NRG_078 ➜	1/X/2493:2497,1/X/2507:2511	NA	NA
76	IL_5NRG_079 ➜	1/X/2534:2535,1/X/2607:2609	NA	NA
77	IL_5NRG_080 ➜	1/X/2537:2539,1/X/2601:2605	NA	NA
78	IL_5NRG_081 ➜	1/X/2539:2540,1/X/2598:2601	NA	NA
79	IL_5NRG_082 ➜	1/X/2549:2550,1/X/2567:2570	NA	NA
80	IL_5NRG_083 ➜	1/X/2618:2620,1/X/2627:2630	NA	NA
81	IL_5NRG_084 ➜	1/X/2663:2667,1/X/2801:2809	NA	NA
82	IL_5NRG_085 ➜	1/X/2679:2685,1/X/2690:2695	NA	NA
83	IL_5NRG_086 ➜	1/X/2707:2711,1/X/2752:2754	NA	NA
84	IL_5NRG_087 ➜	1/X/2714:2718,1/X/2745:2749	NA	NA
85	IL_5NRG_088 ➜	1/X/2722:2723,1/X/2738:2741	NA	NA
86	IL_5NRG_089 ➜	1/X/2764:2769,1/X/2789:2794	NA	NA
87	IL_5NRG_090 ➜	1/X/2858:2859,1/X/2898:2900	NA	NA
88	IL_5NRG_091 ➜	1/X/2863:2865,1/X/2891:2894	NA	NA
89	IL_5NRG_092 ➜	1/X/2867:2872,1/X/2885:2889	NA	NA
90	IL_5NRG_093 ➜	1/Y/2:5,1/Y/110:113	NA	NA
91	IL_5NRG_094 ➜	1/Y/15:16,1/Y/63:65	NA	NA
92	IL_5NRG_095 ➜	1/Y/20:27,1/Y/53:59	NA	NA
93	IL_5NRG_096 ➜	1/Y/28:29,1/Y/49:52	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_5NRG_048 ➜	missing nts	NA
2	IL_5NRG_056 ➜	missing nts	NA
3	IL_5NRG_058 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_5NRG_001 ➜	1/X/30:31,1/X/520:527,1/X/554:555	NA	NA
2	J3_5NRG_002 ➜	1/X/56:57,1/X/70:76,1/X/109:113	NA	NA
3	J3_5NRG_003 ➜	1/X/272:276,1/X/295:303,1/X/414:416	NA	NA
4	J3_5NRG_004 ➜	1/X/728:734,1/X/818:820,1/X/836:839	NA	NA
5	J3_5NRG_005 ➜	1/X/743:745,1/X/777:781,1/X/805:808	NA	NA
6	J3_5NRG_006 ➜	1/X/1335:1340,1/X/1669:1671,1/X/1683:1686	NA	NA
7	J3_5NRG_007 ➜	1/X/1342:1346,1/X/1649:1655,1/X/1664:1667	NA	NA
8	J3_5NRG_008 ➜	1/X/1381:1387,1/X/1418:1422,1/X/1439:1440	NA	NA
9	J3_5NRG_009 ➜	1/X/1860:1864,1/X/1930:1960,1/X/1994:1999	NA	NA
10	J3_5NRG_010 ➜	1/X/2118:2120,1/X/2223:2228,1/X/2249:2255	NA	NA
11	J3_5NRG_011 ➜	1/X/2322:2324,1/X/2348:2350,1/X/2359:2364	NA	NA
12	J3_5NRG_012 ➜	1/X/2544:2547,1/X/2572:2574,1/X/2588:2594	NA	NA
13	J3_5NRG_013 ➜	1/X/2816:2817,1/X/2826:2831,1/X/2909:2913	NA	NA
14	J3_5NRG_014 ➜	1/X/2834:2835,1/X/2851:2856,1/X/2902:2906	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

5NRG Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops