2QA4 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2QA4_001 | 1/0/55:64 | No text annotation Not in a motif group | homologous HL_4V9F_001 HL_99167.1 | |
| HL_2QA4_002 | 1/0/83:91 | No text annotation Not in a motif group | homologous HL_4V9F_002 HL_96598.1 | |
| HL_2QA4_003 | 1/0/118:122 | No text annotation Not in a motif group | homologous HL_4V9F_003 HL_52841.1 | |
| HL_2QA4_005 | 1/0/136:142 | No text annotation Not in a motif group | homologous HL_4V9F_005 HL_03562.2 | |
| HL_2QA4_006 | 1/0/164:171 | No text annotation Not in a motif group | homologous HL_4V9F_006 HL_06192.2 | |
| HL_2QA4_007 | 1/0/195:201 | No text annotation Not in a motif group | homologous HL_4V9F_007 HL_85680.1 | |
| HL_2QA4_008 | 1/0/217:223 | No text annotation Not in a motif group | homologous HL_4V9F_008 HL_67216.7 | |
| HL_2QA4_009 | 1/0/252:257 | GNRA Not in a motif group | homologous HL_4V9F_009 HL_42097.1 | |
| HL_2QA4_010 | 1/0/312:319 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V9F_010 HL_89380.2 | |
| HL_2QA4_011 | 1/0/326:330 | No text annotation Not in a motif group | homologous HL_4V9F_011 HL_75407.1 | |
| HL_2QA4_012 | 1/0/334:342 | No text annotation Not in a motif group | homologous HL_4V9F_012 HL_08002.8 | |
| HL_2QA4_013 | 1/0/390:399 | No text annotation Not in a motif group | homologous HL_4V9F_013 HL_71554.2 | |
| HL_2QA4_014 | 1/0/416:424 | No text annotation Not in a motif group | homologous HL_4V9F_014 HL_12078.2 | |
| HL_2QA4_015 | 1/0/468:473 | GNRA Not in a motif group | homologous HL_4V9F_015 HL_42097.1 | |
| HL_2QA4_016 | 1/0/493:499 | GNRA with one bulged base Not in a motif group | homologous HL_4V9F_016 HL_42097.1 | |
| HL_2QA4_017 | 1/0/576:581 | GNRA Not in a motif group | homologous HL_4V9F_017 HL_42097.1 | |
| HL_2QA4_019 | 1/0/670:676 | No text annotation Not in a motif group | homologous HL_4V9F_019 HL_90617.2 | |
| HL_2QA4_020 | 1/0/690:695 | GNRA Not in a motif group | homologous HL_4V9F_020 HL_42097.1 | |
| HL_2QA4_022 | 1/0/733:738 | Other HL Not in a motif group | homologous HL_4V9F_022 HL_30784.2 | |
| HL_2QA4_023 | 1/0/804:809 | GNRA Not in a motif group | homologous HL_4V9F_023 HL_42097.1 | |
| HL_2QA4_024 | 1/0/837:846 | No text annotation Not in a motif group | homologous HL_4V9F_024 HL_39334.6 | |
| HL_2QA4_025 | 1/0/872:878 | No text annotation Not in a motif group | homologous HL_4V9F_025 HL_74322.1 | |
| HL_2QA4_026 | 1/0/919:924 | No text annotation Not in a motif group | homologous HL_4V9F_026 HL_64365.1 | |
| HL_2QA4_028 | 1/0/1054:1060 | GNRA Not in a motif group | homologous HL_4V9F_028 HL_42097.1 | |
| HL_2QA4_029 | 1/0/1076:1083 | No text annotation Not in a motif group | homologous HL_4V9F_029 HL_64430.2 | |
| HL_2QA4_032 | 1/0/1274:1282 | No text annotation Not in a motif group | homologous HL_4V9F_032 HL_49288.1 | |
| HL_2QA4_033 | 1/0/1326:1331 | GNRA Not in a motif group | homologous HL_4V9F_033 HL_42097.1 | |
| HL_2QA4_034 | 1/0/1387:1395 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V9F_034 HL_89380.2 | |
| HL_2QA4_035 | 1/0/1430:1436 | No text annotation Not in a motif group | homologous HL_4V9F_035 HL_46680.1 | |
| HL_2QA4_036 | 1/0/1468:1474 | GNRA Not in a motif group | homologous HL_4V9F_036 HL_42097.1 | |
| HL_2QA4_037 | 1/0/1498:1507 | No text annotation Not in a motif group | homologous HL_4V9F_037 HL_69023.2 | |
| HL_2QA4_039 | 1/0/1594:1600 | Other HL Not in a motif group | homologous HL_4V9F_039 HL_27930.1 | |
| HL_2QA4_040 | 1/0/1628:1633 | GNRA Not in a motif group | homologous HL_4V9F_040 HL_42097.1 | |
| HL_2QA4_041 | 1/0/1651:1655 | No text annotation Not in a motif group | homologous HL_4V9F_041 HL_49678.1 | |
| HL_2QA4_042 | 1/0/1687:1694 | No text annotation Not in a motif group | homologous HL_4V9F_042 HL_64430.2 | |
| HL_2QA4_043 | 1/0/1705:1713 | No text annotation Not in a motif group | homologous HL_4V9F_043 HL_84085.2 | |
| HL_2QA4_044 | 1/0/1769:1774 | UNCG Not in a motif group | homologous HL_4V9F_044 HL_03562.2 | |
| HL_2QA4_045 | 1/0/1793:1799 | GNRA Not in a motif group | homologous HL_4V9F_045 HL_42097.1 | |
| HL_2QA4_046 | 1/0/1808:1812 | No text annotation Not in a motif group | homologous HL_4V9F_046 HL_76539.2 | |
| HL_2QA4_047 | 1/0/1833:1843 | No text annotation Not in a motif group | homologous HL_4V9F_047 HL_43613.5 | |
| HL_2QA4_048 | 1/0/1862:1867 | GNRA Not in a motif group | homologous HL_4V9F_048 HL_42097.1 | |
| HL_2QA4_049 | 1/0/1916:1923 | No text annotation Not in a motif group | homologous HL_4V9F_049 HL_84085.2 | |
| HL_2QA4_051 | 1/0/1990:1998 | No text annotation Not in a motif group | homologous HL_4V9F_051 HL_51824.1 | |
| HL_2QA4_052 | 1/0/2068:2077 | No text annotation Not in a motif group | homologous HL_4V9F_052 HL_90642.6 | |
| HL_2QA4_054 | 1/0/2248:2253 | GNRA Not in a motif group | geometric HL_4V9F_054 HL_42097.1 | |
| HL_2QA4_055 | 1/0/2281:2289 | No text annotation Not in a motif group | homologous HL_4V9F_055 HL_53171.2 | |
| HL_2QA4_056 | 1/0/2298:2310 | No text annotation Not in a motif group | homologous HL_4V9F_056 HL_19870.6 | |
| HL_2QA4_058 | 1/0/2358:2365 | No text annotation Not in a motif group | geometric HL_4V9F_058 HL_12078.2 | |
| HL_2QA4_059 | 1/0/2389:2399 | No text annotation Not in a motif group | homologous HL_4V9F_059 HL_20146.1 | |
| HL_2QA4_060 | 1/0/2411:2416 | GNRA Not in a motif group | homologous HL_4V9F_060 HL_42097.1 | |
| HL_2QA4_061 | 1/0/2442:2450 | No text annotation Not in a motif group | homologous HL_4V9F_061 HL_12078.2 | |
| HL_2QA4_062 | 1/0/2506:2514 | No text annotation Not in a motif group | homologous HL_4V9F_062 HL_06192.2 | |
| HL_2QA4_063 | 1/0/2563:2570 | No text annotation Not in a motif group | homologous HL_4V9F_063 HL_88526.2 | |
| HL_2QA4_064 | 1/0/2585:2593 | No text annotation Not in a motif group | homologous HL_4V9F_064 NA | |
| HL_2QA4_065 | 1/0/2629:2634 | GNRA Not in a motif group | homologous HL_4V9F_065 HL_42097.1 | |
| HL_2QA4_066 | 1/0/2695:2700 | No text annotation Not in a motif group | geometric HL_7RQB_064 HL_42097.1 | |
| HL_2QA4_067 | 1/0/2737:2742 | Ribsomal LSU H95 Not in a motif group | homologous HL_4V9F_067 HL_46680.1 | |
| HL_2QA4_068 | 1/0/2780:2794 | No text annotation Not in a motif group | homologous HL_4V9F_068 HL_56677.7 | |
| HL_2QA4_069 | 1/0/2836:2844 | No text annotation Not in a motif group | homologous HL_4V9F_069 HL_27930.1 | |
| HL_2QA4_070 | 1/0/2876:2881 | GNRA Not in a motif group | geometric HL_5FJC_002 HL_42097.1 | |
| HL_2QA4_071 | 1/9/37:43 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_2QA4_072 | 1/9/89:94 | GNRA Not in a motif group | homologous HL_4V9F_072 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2QA4_004 | No text annotation | ||
| HL_2QA4_018 | No text annotation | ||
| HL_2QA4_021 | No text annotation | ||
| HL_2QA4_027 | No text annotation | ||
| HL_2QA4_030 | No text annotation | ||
| HL_2QA4_031 | No text annotation | ||
| HL_2QA4_038 | No text annotation | ||
| HL_2QA4_050 | No text annotation | ||
| HL_2QA4_053 | No text annotation | ||
| HL_2QA4_057 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2QA4_001 | 1/0/21:27, 1/0/516:522 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_4V9F_001 IL_66414.6 | |
| IL_2QA4_002 | 1/0/32:34, 1/0/448:451 | No text annotation Not in a motif group | geometric IL_4E48_001 IL_95997.1 | |
| IL_2QA4_003 | 1/0/39:41, 1/0/440:443 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V9F_003 IL_18471.2 | |
| IL_2QA4_004 | 1/0/77:81, 1/0/93:100 | Kink-turn Not in a motif group | homologous IL_4V9F_004 IL_70923.2 | |
| IL_2QA4_005 | 1/0/153:154, 1/0/182:184 | Single stack bend Not in a motif group | homologous IL_4V9F_005 IL_76488.2 | |
| IL_2QA4_006 | 1/0/157:164, 1/0/171:179 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_35728.2 | |
| IL_2QA4_007 | 1/0/210:216, 1/0/224:229 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4V9F_007 IL_76042.2 | |
| IL_2QA4_008 | 1/0/245:248, 1/0/265:266 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_008 IL_50694.2 | |
| IL_2QA4_009 | 1/0/248:249, 1/0/260:265 | No text annotation Not in a motif group | homologous IL_4V9F_009 IL_19724.2 | |
| IL_2QA4_010 | 1/0/274:275, 1/0/374:376 | Single bulged G Not in a motif group | homologous IL_4V9F_010 IL_00225.2 | |
| IL_2QA4_011 | 1/0/280:287, 1/0/365:369 | No text annotation Not in a motif group | homologous IL_4V9F_011 IL_77870.1 | |
| IL_2QA4_012 | 1/0/287:290, 1/0/362:365 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1JID_002 IL_30621.2 | |
| IL_2QA4_013 | 1/0/290:296, 1/0/355:362 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge Not in a motif group | geometric IL_4V9F_012 IL_59724.1 | |
| IL_2QA4_014 | 1/0/307:309, 1/0/322:323 | Single bulged U Not in a motif group | homologous IL_4V9F_013 IL_83039.13 | |
| IL_2QA4_015 | 1/0/487:491, 1/0/501:515 | No text annotation Not in a motif group | geometric IL_4V9F_014 IL_31504.1 | |
| IL_2QA4_016 | 1/0/548:553, 1/0/606:608 | No text annotation Not in a motif group | homologous IL_4V9F_015 IL_59302.1 | |
| IL_2QA4_017 | 1/0/554:555, 1/0/602:605 | No text annotation Not in a motif group | homologous IL_4V9F_016 IL_48100.2 | |
| IL_2QA4_018 | 1/0/558:561, 1/0/596:599 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1JID_002 IL_30621.2 | |
| IL_2QA4_019 | 1/0/561:567, 1/0/591:596 | No text annotation Not in a motif group | ||
| IL_2QA4_020 | 1/0/567:572, 1/0/585:591 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4V9F_019 IL_16458.1 | |
| IL_2QA4_021 | 1/0/663:668, 1/0/678:683 | No text annotation Not in a motif group | ||
| IL_2QA4_022 | 1/0/699:702, 1/0/726:727 | Multiple bulged bases Not in a motif group | homologous IL_4V9F_021 IL_76389.1 | |
| IL_2QA4_023 | 1/0/705:709, 1/0/719:723 | tSH-tHW-tHS Not in a motif group | homologous IL_4V9F_022 IL_17136.1 | |
| IL_2QA4_024 | 1/0/763:765, 1/0/899:901 | No text annotation Not in a motif group | geometric IL_4V9F_023 IL_95997.1 | |
| IL_2QA4_025 | 1/0/765:769, 1/0/892:899 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4V9F_024 IL_17470.6 | |
| IL_2QA4_026 | 1/0/788:789, 1/0/856:858 | Single bulged A Not in a motif group | homologous IL_4V9F_025 IL_37497.2 | |
| IL_2QA4_027 | 1/0/793:794, 1/0/819:821 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_2QA4_028 | 1/0/794:798, 1/0/815:819 | Triple sheared Not in a motif group | homologous IL_4V9F_027 IL_56467.8 | |
| IL_2QA4_029 | 1/0/830:833, 1/0/849:851 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V9F_028 IL_05564.2 | |
| IL_2QA4_030 | 1/0/834:836, 1/0/847:848 | Single bulged U Not in a motif group | homologous IL_4V9F_029 IL_83039.13 | |
| IL_2QA4_031 | 1/0/868:870, 1/0/880:884 | Multiple bulged bases Not in a motif group | homologous IL_4V9F_030 IL_90991.6 | |
| IL_2QA4_032 | 1/0/936:940, 1/0/1026:1034 | Kink-turn Not in a motif group | homologous IL_4V9F_031 IL_45067.2 | |
| IL_2QA4_033 | 1/0/942:944, 1/0/1023:1024 | Single bulged A Not in a motif group | homologous IL_4V9F_032 IL_37497.2 | |
| IL_2QA4_034 | 1/0/952:956, 1/0/1011:1015 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_4V9F_033 IL_38862.1 | |
| IL_2QA4_035 | 1/0/956:957, 1/0/1009:1011 | Minor groove platform Not in a motif group | geometric IL_7RQB_028 IL_42622.2 | |
| IL_2QA4_036 | 1/0/958:964, 1/0/1004:1008 | No text annotation Not in a motif group | homologous IL_4V9F_035 IL_21121.1 | |
| IL_2QA4_037 | 1/0/965:968, 1/0/1000:1003 | No text annotation Not in a motif group | homologous IL_4V9F_036 IL_45371.1 | |
| IL_2QA4_038 | 1/0/1095:1099, 1/0/1257:1261 | UAA/GAN Not in a motif group | homologous IL_4V9F_037 IL_89002.2 | |
| IL_2QA4_039 | 1/0/1101:1108, 1/0/1254:1255 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V9F_038 IL_15861.7 | |
| IL_2QA4_040 | 1/0/1108:1110, 1/0/1253:1254 | Single bulged U Not in a motif group | homologous IL_4V9F_039 IL_83039.13 | |
| IL_2QA4_041 | 1/0/1115:1121, 1/0/1243:1248 | No text annotation Not in a motif group | homologous IL_4V9F_040 IL_57188.3 | |
| IL_2QA4_042 | 1/0/1136:1138, 1/0/1225:1226 | Single bulged G Not in a motif group | homologous IL_4V9F_041 IL_00225.2 | |
| IL_2QA4_043 | 1/0/1147:1155, 1/0/1212:1216 | Kink-turn Not in a motif group | homologous IL_4V9F_042 IL_90538.4 | |
| IL_2QA4_045 | 1/0/1269:1270, 1/0/1286:1289 | No text annotation Not in a motif group | homologous IL_4V9F_045 IL_44546.1 | |
| IL_2QA4_046 | 1/0/1301:1303, 1/0/1351:1354 | Isolated cWS basepair Not in a motif group | geometric IL_4V9F_046 IL_52767.2 | |
| IL_2QA4_047 | 1/0/1303:1305, 1/0/1349:1351 | No text annotation Not in a motif group | homologous IL_4V9F_047 IL_95997.1 | |
| IL_2QA4_048 | 1/0/1312:1319, 1/0/1338:1342 | Kink-turn Not in a motif group | homologous IL_4V9F_048 IL_70923.2 | |
| IL_2QA4_049 | 1/0/1367:1373, 1/0/2052:2057 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4V9F_049 IL_76042.2 | |
| IL_2QA4_050 | 1/0/1416:1419, 1/0/1678:1679 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V9F_050 IL_50694.2 | |
| IL_2QA4_051 | 1/0/1425:1429, 1/0/1437:1439 | C-loop Not in a motif group | homologous IL_4V9F_051 IL_63596.6 | |
| IL_2QA4_052 | 1/0/1456:1460, 1/0/1483:1489 | UAA/GAN Not in a motif group | homologous IL_4V9F_052 IL_89002.2 | |
| IL_2QA4_053 | 1/0/1465:1467, 1/0/1475:1478 | No text annotation Not in a motif group | homologous IL_4V9F_053 IL_46796.1 | |
| IL_2QA4_054 | 1/0/1521:1529, 1/0/1662:1665 | No text annotation Not in a motif group | homologous IL_4V9F_054 IL_46559.1 | |
| IL_2QA4_055 | 1/0/1542:1546, 1/0/1639:1643 | tSH-tHW-tHS Not in a motif group | homologous IL_4V9F_055 IL_17136.1 | |
| IL_2QA4_057 | 1/0/1570:1574, 1/0/1622:1627 | tSH-tHH-tHS Not in a motif group | homologous IL_4V9F_056 IL_62654.1 | |
| IL_2QA4_058 | 1/0/1578:1583, 1/0/1612:1618 | No text annotation Not in a motif group | homologous IL_4V9F_057 IL_34822.1 | |
| IL_2QA4_059 | 1/0/1587:1592, 1/0/1602:1608 | Kink-turn Not in a motif group | homologous IL_4V9F_058 IL_60192.2 | |
| IL_2QA4_060 | 1/0/1728:1734, 1/0/2045:2047 | No text annotation Not in a motif group | homologous IL_4V9F_059 IL_12566.2 | |
| IL_2QA4_061 | 1/0/1741:1743, 1/0/2036:2038 | Isolated tWW turn Not in a motif group | homologous IL_4V9F_060 IL_54997.7 | |
| IL_2QA4_062 | 1/0/1744:1752, 1/0/2031:2035 | No text annotation Not in a motif group | ||
| IL_2QA4_063 | 1/0/1764:1769, 1/0/1774:1780 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_2QA4_064 | 1/0/1826:1827, 1/0/2021:2023 | Single bulged A Not in a motif group | homologous IL_4V9F_064 IL_37497.2 | |
| IL_2QA4_065 | 1/0/1854:1860, 1/0/1869:1877 | Kink-turn related Not in a motif group | homologous IL_4V9F_065 IL_17069.3 | |
| IL_2QA4_066 | 1/0/1893:1896, 1/0/1943:1944 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4V9F_066 IL_88739.1 | |
| IL_2QA4_067 | 1/0/1897:1898, 1/0/1939:1942 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4V9F_067 IL_16396.2 | |
| IL_2QA4_068 | 1/0/1902:1905, 1/0/1934:1935 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V9F_068 IL_95601.3 | |
| IL_2QA4_069 | 1/0/1907:1913, 1/0/1926:1932 | No text annotation Not in a motif group | homologous IL_4V9F_069 IL_36973.6 | |
| IL_2QA4_070 | 1/0/1974:1975, 1/0/2005:2008 | No text annotation Not in a motif group | homologous IL_4V9F_070 IL_59677.2 | |
| IL_2QA4_071 | 1/0/1975:1986, 1/0/2002:2005 | No text annotation Not in a motif group | geometric IL_4V9F_071 IL_81589.2 | |
| IL_2QA4_072 | 1/0/2090:2093, 1/0/2652:2654 | No text annotation Not in a motif group | homologous IL_4V9F_072 IL_63450.2 | |
| IL_2QA4_073 | 1/0/2095:2097, 1/0/2647:2650 | No text annotation Not in a motif group | homologous IL_4V9F_073 IL_54678.5 | |
| IL_2QA4_074 | 1/0/2108:2110, 1/0/2477:2478 | Single bulged U Not in a motif group | homologous IL_4V9F_074 IL_83039.13 | |
| IL_2QA4_075 | 1/0/2111:2112, 1/0/2473:2476 | Minor groove platform Not in a motif group | homologous IL_4V9F_075 IL_42622.2 | |
| IL_2QA4_076 | 1/0/2122:2124, 1/0/2269:2272 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4V9F_076 IL_38958.7 | |
| IL_2QA4_078 | 1/0/2279:2280, 1/0/2290:2292 | Single bulged A Not in a motif group | homologous IL_4V9F_079 IL_37497.2 | |
| IL_2QA4_079 | 1/0/2331:2333, 1/0/2351:2355 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4V9F_080 IL_38958.7 | |
| IL_2QA4_080 | 1/0/2436:2438, 1/0/2454:2455 | Single stack bend Not in a motif group | homologous IL_4V9F_081 IL_76488.2 | |
| IL_2QA4_081 | 1/0/2489:2490, 1/0/2531:2533 | Major groove platform Not in a motif group | homologous IL_4V9F_082 IL_27635.1 | |
| IL_2QA4_082 | 1/0/2492:2494, 1/0/2528:2529 | Major groove platform Not in a motif group | geometric IL_4V9F_083 IL_76223.2 | |
| IL_2QA4_083 | 1/0/2494:2496, 1/0/2524:2528 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_4V9F_084 IL_92788.2 | |
| IL_2QA4_084 | 1/0/2501:2505, 1/0/2515:2519 | Triple sheared Not in a motif group | homologous IL_4V9F_085 IL_56467.8 | |
| IL_2QA4_085 | 1/0/2542:2543, 1/0/2615:2617 | Major groove platform Not in a motif group | homologous IL_4V9F_086 IL_76223.2 | |
| IL_2QA4_086 | 1/0/2545:2547, 1/0/2609:2613 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_087 IL_90933.2 | |
| IL_2QA4_087 | 1/0/2547:2548, 1/0/2606:2609 | Multiple bulged bases Not in a motif group | homologous IL_4V9F_088 IL_71530.2 | |
| IL_2QA4_088 | 1/0/2557:2558, 1/0/2575:2578 | Minor groove platform with intercalation Not in a motif group | homologous IL_4V9F_089 IL_95601.3 | |
| IL_2QA4_089 | 1/0/2626:2627, 1/0/2636:2638 | Single bulged A Not in a motif group | geometric IL_5TBW_013 IL_37497.2 | |
| IL_2QA4_090 | 1/0/2672:2676, 1/0/2809:2817 | tSH-tHS-tHW Not in a motif group | geometric IL_4WF9_099 IL_04638.1 | |
| IL_2QA4_091 | 1/0/2689:2695, 1/0/2700:2705 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_4V9F_092 IL_76042.2 | |
| IL_2QA4_092 | 1/0/2717:2721, 1/0/2761:2763 | C-loop Not in a motif group | homologous IL_4V9F_093 IL_63596.6 | |
| IL_2QA4_093 | 1/0/2724:2728, 1/0/2754:2758 | UAA/GAN Not in a motif group | homologous IL_4V9F_094 IL_07235.1 | |
| IL_2QA4_094 | 1/0/2732:2733, 1/0/2746:2750 | No text annotation Not in a motif group | homologous IL_4V9F_095 IL_71530.2 | |
| IL_2QA4_095 | 1/0/2772:2777, 1/0/2797:2802 | UAA/GAN with extra cWW Not in a motif group | geometric IL_5J7L_350 IL_49767.5 | |
| IL_2QA4_096 | 1/0/2855:2857, 1/0/2900:2903 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4V9F_097 IL_82068.2 | |
| IL_2QA4_097 | 1/0/2860:2861, 1/0/2895:2897 | Single bulged A Not in a motif group | homologous IL_4V9F_098 IL_37497.2 | |
| IL_2QA4_098 | 1/0/2864:2869, 1/0/2888:2892 | No text annotation Not in a motif group | homologous IL_4V9F_099 IL_83162.5 | |
| IL_2QA4_099 | 1/0/2873:2876, 1/0/2881:2884 | Double sheared Not in a motif group | homologous IL_4V9F_100 IL_09705.9 | |
| IL_2QA4_100 | 1/9/15:16, 1/9/64:66 | Major groove intercalation Not in a motif group | homologous IL_4V9F_101 IL_37497.2 | |
| IL_2QA4_101 | 1/9/21:29, 1/9/53:59 | No text annotation Not in a motif group | ||
| IL_2QA4_102 | 1/9/29:31, 1/9/49:53 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_2QA4_103 | 1/9/33:37, 1/9/43:47 | Symmetric double minor groove platform Not in a motif group | geometric IL_4V9F_104 IL_58103.6 | |
| IL_2QA4_104 | 1/9/75:81, 1/9/101:106 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4V9F_106 IL_76042.2 | |
| IL_2QA4_105 | 1/9/86:88, 1/9/95:96 | Single bulged U Not in a motif group | homologous IL_4V9F_107 IL_83039.13 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2QA4_044 | No text annotation | ||
| IL_2QA4_056 | No text annotation | ||
| IL_2QA4_077 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_2QA4_001 | 1/0/240:244, 1/0/267:273, 1/0/377:379 | No text annotation Not in a motif group | homologous J3_4V9F_001 NA | |
| J3_2QA4_002 | 1/0/774:780, 1/0/866:868, 1/0/884:887 | No text annotation Not in a motif group | ||
| J3_2QA4_003 | 1/0/789:791, 1/0/823:828, 1/0/853:856 | No text annotation Not in a motif group | ||
| J3_2QA4_005 | 1/0/1404:1409, 1/0/1700:1703, 1/0/1715:1718 | No text annotation Not in a motif group | homologous J3_4V9F_005 NA | |
| J3_2QA4_006 | 1/0/1412:1415, 1/0/1680:1686, 1/0/1695:1697 | No text annotation Not in a motif group | homologous J3_4V9F_006 NA | |
| J3_2QA4_007 | 1/0/2131:2134, 1/0/2241:2245, 1/0/2256:2262 | No text annotation Not in a motif group | homologous J3_4V9F_007 NA | |
| J3_2QA4_008 | 1/0/2329:2331, 1/0/2355:2358, 1/0/2365:2371 | No text annotation Not in a motif group | ||
| J3_2QA4_009 | 1/0/2552:2555, 1/0/2580:2583, 1/0/2595:2602 | No text annotation Not in a motif group | homologous J3_4V9F_009 NA | |
| J3_2QA4_010 | 1/9/9:14, 1/9/67:71, 1/9/110:114 | No text annotation Not in a motif group | homologous J3_4V9F_010 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_2QA4_004 | No text annotation |
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