Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4L47_0011/QA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4L47_0031/QA/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.1
HL_4L47_0041/QA/186F:191ANo text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_10278.1
HL_4L47_0051/QA/201:216No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_56691.2
HL_4L47_0061/QA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4L47_0071/QA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_4L47_0081/QA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4L47_0091/QA/342:347No text annotation
Not in a motif group
HL_4L47_0101/QA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_4L47_0111/QA/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_4L47_0121/QA/458:474No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4L47_0131/QA/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_4L47_0141/QA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_4L47_0151/QA/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_4L47_0161/QA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_4L47_0171/QA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4L47_0181/QA/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.1
HL_4L47_0191/QA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_4L47_0201/QA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_4L47_0211/QA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4L47_0221/QA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_4L47_0241/QA/1076:1081GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.1
HL_4L47_0251/QA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4L47_0261/QA/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_4L47_0271/QA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_4L47_0281/QA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_4L47_0291/QA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4L47_0301/QA/1356:1366No text annotation
Not in a motif group
HL_4L47_0311/QA/1449:1454No text annotation
Not in a motif group
geometric
HL_5TBW_004
HL_98426.1
HL_4L47_0321/QA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4L47_0331/QV/13:22No text annotation
Not in a motif group
homologous
HL_4WT8_215
HL_25462.2
HL_4L47_0341/QV/31:39No text annotation
Not in a motif group
homologous
HL_5E81_212
NA
HL_4L47_0351/QV/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4TUE_035
HL_71309.1
HL_4L47_0361/QY/31:39No text annotation
Not in a motif group
geometric
HL_3MJA_001
HL_53597.2
HL_4L47_0371/RA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4L47_0381/RA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_4L47_0391/RA/123:128No text annotation
Not in a motif group
homologous
HL_7RQB_003
HL_75407.1
HL_4L47_0401/RA/137A:141ANo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_4L47_0421/RA/194:201No text annotation
Not in a motif group
homologous
HL_5J7L_139
HL_06192.2
HL_4L47_0431/RA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_4L47_0441/RA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_4L47_0451/RA/270J:270PNo text annotation
Not in a motif group
geometric
HL_5J7L_018
HL_34168.2
HL_4L47_0461/RA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_4L47_0471/RA/319:323No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_75407.1
HL_4L47_0481/RA/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_4L47_0491/RA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_4L47_0501/RA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4L47_0511/RA/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_4L47_0521/RA/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.1
HL_4L47_0531/RA/544:549No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_4L47_0541/RA/566:575No text annotation
Not in a motif group
homologous
HL_7RQB_018
HL_89380.2
HL_4L47_0551/RA/611:617No text annotation
Not in a motif group
homologous
HL_7A0S_019
HL_32369.1
HL_4L47_0561/RA/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.1
HL_4L47_0571/RA/641:647No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_42097.1
HL_4L47_0581/RA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4L47_0591/RA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_4L47_0601/RA/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_27930.1
HL_4L47_0611/RA/826:831No text annotation
Not in a motif group
homologous
HL_4WF9_025
HL_64365.1
HL_4L47_0621/RA/884:892No text annotation
Not in a motif group
HL_4L47_0631/RA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_4L47_0641/RA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_4L47_0671/RA/1171:1178No text annotation
Not in a motif group
geometric
HL_4L8H_001
HL_53837.1
HL_4L47_0681/RA/1223:1228No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_4L47_0691/RA/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4WF9_032
HL_89380.2
HL_4L47_0701/RA/1324:1330No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_4L47_0711/RA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_4L47_0721/RA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_4L47_0731/RA/1451:1459No text annotation
Not in a motif group
geometric
HL_7RQB_037
HL_32426.1
HL_4L47_0741/RA/1492:1498No text annotation
Not in a motif group
homologous
HL_7RQB_038
HL_46680.1
HL_4L47_0761/RA/1565:1568No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.2
HL_4L47_0771/RA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4L47_0781/RA/1630A:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_4L47_0791/RA/1691:1696UNCG
Not in a motif group
geometric
HL_4LFB_011
HL_03562.2
HL_4L47_0801/RA/1727:1733No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_4L47_0811/RA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4L47_0821/RA/1777:1787No text annotation
Not in a motif group
homologous
HL_7RQB_045
HL_43613.5
HL_4L47_0831/RA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_4L47_0841/RA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_4L47_0851/RA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4L47_0861/RA/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_4L47_0871/RA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4L47_0881/RA/2143:2148UNCG
Not in a motif group
homologous
HL_3U4M_001
HL_03562.2
HL_4L47_0891/RA/2209:2215No text annotation
Not in a motif group
homologous
HL_7RQB_052
HL_98426.1
HL_4L47_0901/RA/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_4L47_0911/RA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_4L47_0921/RA/2304:2312No text annotation
Not in a motif group
HL_4L47_0931/RA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_4L47_0941/RA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_4L47_0951/RA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_4L47_0961/RA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_4L47_0971/RA/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_4L47_0981/RA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_4L47_0991/RA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4L47_1001/RA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_4L47_1011/RA/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_42097.1
HL_4L47_1021/RA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_4L47_1031/RA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_4L47_1051/RA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_4L47_1061/RA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_4L47_1071/RB/38:44No text annotation
Not in a motif group
geometric
HL_5J7L_203
HL_87939.1
HL_4L47_1081/RB/86:90No text annotation
Not in a motif group
homologous
HL_7RQB_071
HL_42097.1
HL_4L47_1091/XA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4L47_1111/XA/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.1
HL_4L47_1121/XA/186F:191ANo text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_10278.1
HL_4L47_1131/XA/201:216No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_56691.2
HL_4L47_1141/XA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4L47_1151/XA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_4L47_1161/XA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4L47_1171/XA/343:347No text annotation
Not in a motif group
HL_4L47_1181/XA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_4L47_1191/XA/419:424No text annotation
Not in a motif group
homologous
HL_6CZR_082
HL_03562.2
HL_4L47_1201/XA/458:474No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4L47_1211/XA/522:527No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_4L47_1221/XA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_4L47_1231/XA/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_4L47_1241/XA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_4L47_1251/XA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4L47_1261/XA/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.1
HL_4L47_1271/XA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_4L47_1281/XA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_4L47_1291/XA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4L47_1301/XA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_4L47_1321/XA/1076:1081GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.1
HL_4L47_1331/XA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4L47_1341/XA/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_4L47_1351/XA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_4L47_1361/XA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_4L47_1371/XA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4L47_1381/XA/1356:1366No text annotation
Not in a motif group
HL_4L47_1391/XA/1449:1454No text annotation
Not in a motif group
HL_4L47_1401/XA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4L47_1411/XV/13:22No text annotation
Not in a motif group
homologous
HL_4WT8_215
HL_25462.2
HL_4L47_1421/XV/31:39No text annotation
Not in a motif group
homologous
HL_5E81_212
NA
HL_4L47_1431/XV/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4TUE_035
HL_71309.1
HL_4L47_1441/XY/31:39No text annotation
Not in a motif group
geometric
HL_3MJA_001
HL_53597.2
HL_4L47_1451/YA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4L47_1461/YA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_4L47_1471/YA/123:128No text annotation
Not in a motif group
homologous
HL_7RQB_003
HL_75407.1
HL_4L47_1481/YA/137A:141ANo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_4L47_1501/YA/194:201No text annotation
Not in a motif group
geometric
HL_5J7L_139
HL_06192.2
HL_4L47_1511/YA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_4L47_1521/YA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_4L47_1531/YA/270K:270NNo text annotation
Not in a motif group
homologous
HL_7RQB_009
HL_89098.1
HL_4L47_1541/YA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_4L47_1551/YA/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_4L47_1561/YA/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_4L47_1571/YA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_4L47_1581/YA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4L47_1591/YA/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_4L47_1601/YA/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.1
HL_4L47_1611/YA/544:549No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_4L47_1621/YA/566:575No text annotation
Not in a motif group
homologous
HL_7RQB_018
HL_89380.2
HL_4L47_1631/YA/611:617No text annotation
Not in a motif group
homologous
HL_7A0S_019
HL_32369.1
HL_4L47_1641/YA/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.1
HL_4L47_1651/YA/641:647GNRA with one bulged base
Not in a motif group
homologous
HL_4WF9_021
HL_42097.1
HL_4L47_1661/YA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4L47_1671/YA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_4L47_1681/YA/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_27930.1
HL_4L47_1691/YA/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_4L47_1701/YA/884:892No text annotation
Not in a motif group
HL_4L47_1711/YA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_4L47_1721/YA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_4L47_1731/YA/1064:1074No text annotation
Not in a motif group
homologous
HL_6PRV_001
HL_07145.1
HL_4L47_1751/YA/1171:1178No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_4L47_1761/YA/1223:1228No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_4L47_1771/YA/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_4L47_1781/YA/1324:1330No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_4L47_1791/YA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_4L47_1801/YA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_4L47_1811/YA/1451:1459No text annotation
Not in a motif group
geometric
HL_7RQB_037
HL_32426.1
HL_4L47_1821/YA/1492:1498No text annotation
Not in a motif group
homologous
HL_7RQB_038
HL_46680.1
HL_4L47_1831/YA/1533:1538No text annotation
Not in a motif group
HL_4L47_1841/YA/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_4L47_1851/YA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4L47_1861/YA/1630A:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_4L47_1871/YA/1691:1696UNCG
Not in a motif group
homologous
HL_5J7L_175
HL_03562.2
HL_4L47_1881/YA/1727:1733No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_4L47_1891/YA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4L47_1901/YA/1777:1787No text annotation
Not in a motif group
homologous
HL_7RQB_045
HL_43613.5
HL_4L47_1911/YA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_4L47_1921/YA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_4L47_1931/YA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4L47_1941/YA/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_4L47_1951/YA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4L47_1961/YA/2143:2148UNCG
Not in a motif group
homologous
HL_3U4M_001
HL_03562.2
HL_4L47_1971/YA/2209:2215No text annotation
Not in a motif group
homologous
HL_7RQB_052
HL_98426.1
HL_4L47_1981/YA/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_4L47_1991/YA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_4L47_2001/YA/2304:2312No text annotation
Not in a motif group
HL_4L47_2011/YA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_4L47_2021/YA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_4L47_2031/YA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_4L47_2041/YA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_4L47_2051/YA/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_4L47_2061/YA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_4L47_2071/YA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4L47_2081/YA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_4L47_2091/YA/2658:2663No text annotation
Not in a motif group
homologous
HL_7RQB_064
HL_42097.1
HL_4L47_2101/YA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_4L47_2111/YA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_4L47_2131/YA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_4L47_2141/YA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_4L47_2151/YB/38:44No text annotation
Not in a motif group
geometric
HL_7RQB_070
HL_87939.1
HL_4L47_2161/YB/86:90No text annotation
Not in a motif group
homologous
HL_7RQB_071
HL_42097.1

Problematic loops

#loop idProblemSequence
HL_4L47_002No text annotation
HL_4L47_023No text annotation
HL_4L47_041No text annotation
HL_4L47_065No text annotation
HL_4L47_066No text annotation
HL_4L47_075No text annotation
HL_4L47_104No text annotation
HL_4L47_110No text annotation
HL_4L47_131No text annotation
HL_4L47_149No text annotation
HL_4L47_174No text annotation
HL_4L47_212No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4L47_0011/QA/30:32,
1/QA/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.2
IL_4L47_0021/QA/44:45,
1/QA/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.2
IL_4L47_0031/QA/47:52,
1/QA/359:361
No text annotation
Not in a motif group
geometric
IL_4LFB_003
IL_11178.1
IL_4L47_0041/QA/54:56,
1/QA/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_4L47_0051/QA/63:66,
1/QA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_4L47_0061/QA/67:69,
1/QA/99:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_4L47_0071/QA/129:131,
1/QA/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_4L47_0081/QA/132:136,
1/QA/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_4L47_0091/QA/148:153,
1/QA/168:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_4L47_0101/QA/185:186B,
1/QA/191E:192
No text annotation
Not in a motif group
IL_4L47_0111/QA/242:247,
1/QA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_4L47_0121/QA/249:252,
1/QA/274:275
No text annotation
Not in a motif group
homologous
IL_5J7L_015
IL_48100.2
IL_4L47_0131/QA/292:293,
1/QA/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_4L47_0141/QA/367:369,
1/QA/392:393
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.13
IL_4L47_0151/QA/371:375,
1/QA/389:390
C-loop
Not in a motif group
geometric
IL_4LFB_015
IL_75255.1
IL_4L47_0161/QA/375:376,
1/QA/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.2
IL_4L47_0171/QA/409:416,
1/QA/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_4L47_0181/QA/446:450,
1/QA/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4LFB_018
IL_88269.3
IL_4L47_0191/QA/450:455,
1/QA/477:483
No text annotation
Not in a motif group
homologous
IL_4LFB_019
IL_11882.1
IL_4L47_0201/QA/504:511,
1/QA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_4L47_0211/QA/515:521,
1/QA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4L47_0221/QA/569:575,
1/QA/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_4L47_0231/QA/580:584,
1/QA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_4L47_0241/QA/594:596,
1/QA/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.1
IL_4L47_0251/QA/597:598,
1/QA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_4L47_0261/QA/605:612,
1/QA/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_4L47_0271/QA/654:655,
1/QA/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_4L47_0281/QA/657:658,
1/QA/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.1
IL_4L47_0291/QA/662:666,
1/QA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_4L47_0301/QA/673:677,
1/QA/713:717
No text annotation
Not in a motif group
IL_4L47_0311/QA/683:688,
1/QA/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_4L47_0321/QA/774:778,
1/QA/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_4L47_0331/QA/779:783,
1/QA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_4L47_0341/QA/887:894,
1/QA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4L47_0351/QA/922:923,
1/QA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.2
IL_4L47_0361/QA/925:927,
1/QA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.2
IL_4L47_0371/QA/933:935,
1/QA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_4L47_0381/QA/953:954,
1/QA/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.2
IL_4L47_0391/QA/1048:1050,
1/QA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.13
IL_4L47_0401/QA/1052:1056,
1/QA/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_4L47_0411/QA/1057:1058,
1/QA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_4L47_0421/QA/1060:1061,
1/QA/1195:1197
Single bulged U
Not in a motif group
homologous
IL_4LFB_046
IL_83039.13
IL_4L47_0431/QA/1061:1063,
1/QA/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_95997.1
IL_4L47_0441/QA/1124:1128,
1/QA/1144:1149
No text annotation
Not in a motif group
IL_4L47_0451/QA/1129:1132,
1/QA/1142:1143
Multiple bulged bases
Not in a motif group
geometric
IL_5W1H_001
IL_44546.1
IL_4L47_0461/QA/1247:1253,
1/QA/1284:1290
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_4L47_0471/QA/1255:1258,
1/QA/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_4L47_0481/QA/1259:1260,
1/QA/1274:1276
Not an internal loop
Not in a motif group
homologous
IL_4LFB_053
IL_93353.1
IL_4L47_0491/QA/1260:1262,
1/QA/1273:1274
Minor groove platform
Not in a motif group
geometric
IL_4LFB_054
IL_93353.1
IL_4L47_0501/QA/1303:1308,
1/QA/1329:1334
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_4L47_0511/QA/1399:1401,
1/QA/1501:1504
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.3
IL_4L47_0521/QA/1401:1404,
1/QA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4L47_0531/QA/1405:1407,
1/QA/1494:1496
UU cWW
Not in a motif group
geometric
IL_1ZZ5_002
IL_51629.2
IL_4L47_0541/QA/1407:1409,
1/QA/1491:1494
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_4L47_0551/QA/1412:1414,
1/QA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_4L47_0561/QA/1416:1419,
1/QA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_4L47_0571/QA/1431:1435,
1/QA/1466:1469
UAA/GAN variation
Not in a motif group
geometric
IL_4LFB_062
IL_07235.1
IL_4L47_0581/QA/1435:1437,
1/QA/1464:1466
No text annotation
Not in a motif group
homologous
IL_4LFB_063
IL_95997.1
IL_4L47_0591/QA/1440:1447,
1/QA/1459:1461
No text annotation
Not in a motif group
homologous
IL_4LFB_064
IL_92788.2
IL_4L47_0601/RA/24:30,
1/RA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_7RQB_001
IL_66414.6
IL_4L47_0611/RA/36:37,
1/RA/442:444
Single bulged A
Not in a motif group
homologous
IL_7A0S_002
IL_37497.2
IL_4L47_0621/RA/43:44,
1/RA/434:436
Minor groove platform
Not in a motif group
homologous
IL_7RQB_003
IL_42622.2
IL_4L47_0631/RA/81:85,
1/RA/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_4L47_0641/RA/183:184,
1/RA/212:214
Single stack bend
Not in a motif group
homologous
IL_7RQB_005
IL_76488.2
IL_4L47_0651/RA/188:194,
1/RA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7RQB_006
IL_04346.7
IL_4L47_0661/RA/239:245,
1/RA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_4L47_0671/RA/271:272,
1/RA/365:366
No text annotation
Not in a motif group
IL_4L47_0681/RA/273:273A,
1/RA/363E:364
Major groove platform
Not in a motif group
homologous
IL_7RQB_009
IL_27635.1
IL_4L47_0691/RA/273F:279,
1/RA/361:363
No text annotation
Not in a motif group
IL_4L47_0701/RA/280:284,
1/RA/357:360
tSH-tHW
Not in a motif group
homologous
IL_7RQB_011
IL_04059.1
IL_4L47_0711/RA/288:290,
1/RA/350:353
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_012
IL_38958.7
IL_4L47_0721/RA/293:295,
1/RA/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_4L47_0731/RA/481:484,
1/RA/496:509
No text annotation
Not in a motif group
geometric
IL_7RQB_014
IL_60992.6
IL_4L47_0741/RA/564:566,
1/RA/575:577
No text annotation
Not in a motif group
geometric
IL_7RQB_015
IL_95997.1
IL_4L47_0751/RA/606:609A,
1/RA/618A:622
AAA cross-strand stack
Not in a motif group
homologous
IL_4WF9_019
IL_17136.1
IL_4L47_0761/RA/672:674,
1/RA/806:808
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_95997.1
IL_4L47_0771/RA/674:678,
1/RA/799:806
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_4WF9_021
IL_17470.6
IL_4L47_0781/RA/697:698,
1/RA/763:765
Single bulged A
Not in a motif group
geometric
IL_7RQB_019
IL_37497.2
IL_4L47_0791/RA/702:703,
1/RA/728:730
Single bulged G
Not in a motif group
homologous
IL_7RQB_020
IL_00225.2
IL_4L47_0801/RA/703:707,
1/RA/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_4L47_0811/RA/738:741,
1/RA/756:758
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_022
IL_05564.2
IL_4L47_0821/RA/775:777,
1/RA/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_023
IL_90991.6
IL_4L47_0831/RA/837:838,
1/RA/940:942
Single stack bend
Not in a motif group
homologous
IL_7RQB_024
IL_92001.1
IL_4L47_0841/RA/844:846,
1/RA/931:934
Intercalated cWW
Not in a motif group
homologous
IL_7RQB_025
IL_52767.2
IL_4L47_0851/RA/846:850,
1/RA/928:931
No text annotation
Not in a motif group
geometric
IL_7