5UYK Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/01/59:68 | geometric HL_4GXY_003 | NA HL_67719.1* | ||
| 1/01/87:95 | geometric HL_5J7L_135 | NA HL_17926.5* | ||
| 1/01/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
| 1/01/137:142 | geometric HL_2Y8W_001 | NA HL_69459.1* | ||
| 1/01/158:168 | geometric HL_5J7L_138 | NA HL_81820.1* | ||
| 1/01/194:201 | geometric HL_5J7L_139 | NA HL_23481.5* | ||
| 1/01/225:230 | geometric HL_5J7L_140 | NA HL_35894.3* | ||
| 1/01/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/01/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
| 1/01/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/01/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
| 1/01/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/01/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/01/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/01/545:548 | homologous HL_7RQB_017 | NA | ||
| 1/01/566:575 | homologous HL_7RQB_018 | NA HL_33239.17* | ||
| 1/01/611:617 | geometric HL_361D_002 | NA HL_18218.2* | ||
| 1/01/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/01/641:647 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
| 1/01/712:719 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
| 1/01/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
| 1/01/779:785 | geometric HL_5U3G_001 | NA HL_40469.1* | ||
| 1/01/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/01/884:892 | NA | NA | ||
| 1/01/955:962 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
| 1/01/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
| 1/01/1062:1076 | NA | NA | ||
| 1/01/1092:1099 | homologous HL_7RQB_030 | NA | ||
| 1/01/1171:1178 | NA | NA | ||
| 1/01/1222:1227 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/01/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/01/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
| 1/01/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/01/1389:1398 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
| 1/01/1450:1461 | geometric HL_5J7L_018 | NA HL_93229.1* | ||
| 1/01/1492:1498 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
| 1/01/1533:1538 | geometric HL_5TBW_006 | NA HL_98557.5* | ||
| 1/01/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/01/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/01/1630:1636 | GNRA with one bulged base geometric HL_5J7L_174 | NA HL_02361.6* | ||
| 1/01/1691:1696 | homologous HL_7RQB_042 | NA HL_79299.11* | ||
| 1/01/1728:1731 | geometric HL_5J7L_176 | NA HL_46546.1* | ||
| 1/01/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/01/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
| 1/01/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/01/1868:1873 | Other HL geometric HL_2CZJ_007 | NA HL_79299.11* | ||
| 1/01/1910:1920 | NA | NA | ||
| 1/01/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/01/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
| 1/01/2142:2149 | NA | NA | ||
| 1/01/2209:2215 | geometric HL_5J7L_185 | NA HL_16845.5* | ||
| 1/01/2248:2256 | homologous HL_7RQB_053 | NA | ||
| 1/01/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
| 1/01/2303:2313 | homologous HL_7RQB_055 | NA HL_11805.3* | ||
| 1/01/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/01/2356:2361 | Other HL geometric HL_5J7L_190 | NA HL_43074.18* | ||
| 1/01/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
| 1/01/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
| 1/01/2471:2479 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
| 1/01/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
| 1/01/2551:2557 | homologous HL_7RQB_062 | NA | ||
| 1/01/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/01/2658:2663 | geometric HL_7RQB_064 | NA HL_43074.18* | ||
| 1/01/2701:2706 | Ribsomal LSU H95 geometric HL_5J7L_198 | NA HL_67719.1* | ||
| 1/01/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/01/2795:2801 | geometric HL_6VMY_004 | NA HL_16898.3* | ||
| 1/01/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/01/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
| 1/02/34:48 | NA | NA | ||
| 1/02/86:90 | NA | NA | ||
| 1/A/12:22 | NA | NA | ||
| 1/A/78:91 | NA | NA | ||
| 1/A/158:163 | NA | NA | ||
| 1/A/186:191 | NA | NA | ||
| 1/A/206:213 | NA | NA | ||
| 1/A/259:267 | NA | NA | ||
| 1/A/296:301 | NA | NA | ||
| 1/A/320:333 | NA | NA | ||
| 1/A/342:347 | NA | NA | ||
| 1/A/379:384 | NA | NA | ||
| 1/A/419:424 | NA | NA | ||
| 1/A/462:470 | NA | NA | ||
| 1/A/522:527 | NA | NA | ||
| 1/A/617:623 | NA | NA | ||
| 1/A/689:698 | NA | NA | ||
| 1/A/726:731 | NA | NA | ||
| 1/A/786:796 | NA | NA | ||
| 1/A/840:846 | NA | NA | ||
| 1/A/862:867 | NA | NA | ||
| 1/A/897:902 | NA | NA | ||
| 1/A/963:972 | NA | NA | ||
| 1/A/1012:1017 | NA | NA | ||
| 1/A/1076:1081 | NA | NA | ||
| 1/A/1089:1096 | NA | NA | ||
| 1/A/1134:1140 | NA | NA | ||
| 1/A/1165:1171 | NA | NA | ||
| 1/A/1265:1270 | NA | NA | ||
| 1/A/1314:1323 | NA | NA | ||
| 1/A/1356:1366 | NA | NA | ||
| 1/A/1449:1454 | NA | NA | ||
| 1/A/1515:1520 | NA | NA | ||
| 1/W/13:22 | NA | NA | ||
| 1/W/31:39 | NA | NA | ||
| 1/W/53:61 | NA | NA | ||
| 1/X/13:22 | NA | NA | ||
| 1/X/31:39 | NA | NA | ||
| 1/X/53:61 | NA | NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5UYK_108 | NA | ||
| HL_5UYK_109 | NA | ||
| HL_5UYK_110 | NA |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/01/24:30, 1/01/510:516 | Triple sheared with non-canonical cWW homologous IL_7RQB_001 | NA IL_66414.5* | ||
| 1/01/36:37, 1/01/442:444 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
| 1/01/43:44, 1/01/434:436 | Minor groove platform homologous IL_7RQB_003 | NA IL_06437.11* | ||
| 1/01/81:85, 1/01/97:105 | Kink-turn homologous IL_7RQB_004 | NA IL_29549.9* | ||
| 1/01/183:184, 1/01/212:214 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
| 1/01/188:194, 1/01/201:208 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_006 | NA IL_04346.5* | ||
| 1/01/239:245, 1/01/253:258 | 7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007 | NA IL_35110.5* | ||
| 1/01/269:271, 1/01/366:370 | geometric IL_5J7L_252 | NA IL_47972.1* | ||
| 1/01/274:282, 1/01/358:363 | NA | NA | ||
| 1/01/293:295, 1/01/343:347 | homologous IL_7RQB_013 | NA IL_69440.1* | ||
| 1/01/481:484, 1/01/496:509 | homologous IL_7RQB_014 | NA IL_60992.5* | ||
| 1/01/536:539, 1/01/554:557 | Double sheared geometric IL_5J7L_256 | NA IL_09705.7* | ||
| 1/01/564:566, 1/01/575:577 | geometric IL_4Y1M_005 | NA IL_01312.13* | ||
| 1/01/606:610, 1/01/618:622 | AAA cross-strand stack homologous IL_7RQB_016 | NA IL_56467.6* | ||
| 1/01/672:674, 1/01/806:808 | geometric IL_4LFB_010 | NA IL_01312.13* | ||
| 1/01/674:678, 1/01/799:806 | homologous IL_7RQB_018 | NA IL_17470.5* | ||
| 1/01/697:698, 1/01/763:765 | Single bulged A homologous IL_7RQB_019 | NA IL_80007.16* | ||
| 1/01/702:703, 1/01/728:730 | Single bulged G homologous IL_7RQB_020 | NA IL_59137.10* | ||
| 1/01/703:707, 1/01/724:728 | Triple sheared geometric IL_7RQB_021 | NA IL_56467.6* | ||
| 1/01/738:740, 1/01/757:758 | Major groove platform geometric IL_5J7L_264 | NA IL_80663.10* | ||
| 1/01/775:777, 1/01/787:791 | Multiple bulged bases geometric IL_5J7L_265 | NA IL_90991.5* | ||
| 1/01/837:838, 1/01/940:942 | Single stack bend homologous IL_7RQB_024 | NA IL_04038.4* | ||
| 1/01/844:847, 1/01/933:934 | Other IL geometric IL_5J7L_267 | NA IL_31836.1* | ||
| 1/01/847:848, 1/01/930:933 | Stack outside cWW geometric IL_5J7L_268 | NA IL_37629.1* | ||
| 1/01/850:851, 1/01/926:928 | Single stack bend geometric IL_5J7L_269 | NA IL_04038.4* | ||
| 1/01/856:862, 1/01/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge geometric IL_5J7L_270 | NA IL_93830.2* | ||
| 1/01/862:863, 1/01/913:915 | Minor groove platform homologous IL_7RQB_028 | NA IL_06437.11* | ||
| 1/01/864:868, 1/01/909:912 | C-loop homologous IL_7RQB_029 | NA IL_63596.4* | ||
| 1/01/870:872, 1/01/905:907 | geometric IL_5J7L_273 | NA IL_01312.13* | ||
| 1/01/875:879, 1/01/898:902 | Triple sheared geometric IL_4WFL_001 | NA IL_56467.6* | ||
| 1/01/880:881, 1/01/895:897 | NA | NA | ||
| 1/01/994:996, 1/01/1159:1160 | Single bulged C homologous IL_7RQB_035 | NA IL_61258.10* | ||
| 1/01/998:1002, 1/01/1153:1157 | UAA/GAN homologous IL_7RQB_036 | NA IL_53523.5* | ||
| 1/01/1004:1011, 1/01/1150:1151 | SSU/LSU pseudoknot homologous IL_7RQB_037 | NA IL_15861.6* | ||
| 1/01/1011:1013, 1/01/1149:1150 | Single bulged U geometric IL_5J7L_279 | NA IL_83039.11* | ||
| 1/01/1018:1024, 1/01/1140:1144 | homologous IL_7RQB_039 | NA IL_57188.3* | ||
| 1/01/1024:1030, 1/01/1124:1140 | geometric IL_5J7L_281 | NA IL_22615.1* | ||
| 1/01/1031:1034, 1/01/1121:1123 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | NA IL_55456.1* | ||
| 1/01/1038:1041, 1/01/1114:1117 | Tandem non-canonical cWW pairs geometric IL_5J7L_283 | NA IL_85877.10* | ||
| 1/01/1043:1051, 1/01/1108:1112 | Kink-turn homologous IL_7RQB_042 | NA IL_90538.3* | ||
| 1/01/1059:1062, 1/01/1076:1079 | NA | NA | ||
| 1/01/1087:1090, 1/01/1101:1102 | Major groove platform geometric IL_3NKB_002 | NA IL_80663.10* | ||
| 1/01/1196:1198, 1/01/1247:1250 | Isolated cWS basepair homologous IL_7RQB_045 | NA IL_67621.5* | ||
| 1/01/1202:1207, 1/01/1239:1243 | tSH-tHH-tHS geometric IL_4V9F_056 | NA IL_62654.1* | ||
| 1/01/1208:1215, 1/01/1234:1238 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
| 1/01/1262:1269, 1/01/2011:2017 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049 | NA IL_04346.5* | ||
| 1/01/1310:1313, 1/01/1603:1604 | Major groove platform; stack outside cWW homologous IL_7RQB_050 | NA IL_70995.6* | ||
| 1/01/1319:1323, 1/01/1331:1333 | C-loop homologous IL_7RQB_051 | NA IL_63596.4* | ||
| 1/01/1351:1355, 1/01/1376:1380 | UAA/GAN homologous IL_7RQB_052 | NA IL_53523.5* | ||
| 1/01/1357:1361, 1/01/1370:1374 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
| 1/01/1415:1416, 1/01/1582:1587 | geometric IL_5J7L_294 | NA IL_90348.1* | ||
| 1/01/1417:1421, 1/01/1577:1581 | UAA/GAN homologous IL_7RQB_055 | NA IL_53523.5* | ||
| 1/01/1432:1435, 1/01/1557:1561 | Tandem non-canonical cWW pairs geometric IL_5J7L_296 | NA IL_85877.10* | ||
| 1/01/1437:1440, 1/01/1551:1555 | tSH-tHW homologous IL_7RQB_057 | NA IL_08757.3* | ||
| 1/01/1468:1471, 1/01/1520:1524 | geometric IL_5J7L_299 | NA IL_68574.2* | ||
| 1/01/1474:1478, 1/01/1513:1517 | tSH-tHW-tHS geometric IL_5J7L_300 | NA IL_39521.5* | ||
| 1/01/1481:1482, 1/01/1507:1510 | NA | NA | ||
| 1/01/1489:1491, 1/01/1499:1500 | Single bulged A geometric IL_4V9F_098 | NA IL_80007.16* | ||
| 1/01/1526:1529, 1/01/1542:1546 | UAA/GAN variation geometric IL_5J7L_303 | NA IL_81389.2* | ||
| 1/01/1651:1656, 1/01/2004:2006 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
| 1/01/1663:1665, 1/01/1995:1997 | Isolated tWW turn homologous IL_7RQB_065 | NA IL_54997.5* | ||
| 1/01/1666:1669, 1/01/1993:1994 | Major groove platform; stack outside cWW geometric IL_4WF9_064 | NA IL_70995.6* | ||
| 1/01/1669:1674, 1/01/1990:1993 | Intercalated tWH homologous IL_7RQB_067 | NA IL_01312.13* | ||
| 1/01/1686:1691, 1/01/1696:1702 | tSH-tSH-tHH-tHS geometric IL_7RQB_068 | NA IL_66584.5* | ||
| 1/01/1712:1718, 1/01/1742:1746 | 6x5 Sarcin-Ricin; G-bulge geometric IL_5J7L_309 | NA IL_88269.2* | ||
| 1/01/1720:1724, 1/01/1736:1740 | Triple sheared geometric IL_5J7L_310 | NA IL_56467.6* | ||
| 1/01/1727:1728, 1/01/1731:1733 | Single bulged C geometric IL_5J7L_311 | NA IL_61258.10* | ||
| 1/01/1770:1771, 1/01/1980:1982 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
| 1/01/1798:1804, 1/01/1813:1821 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
| 1/01/1837:1840, 1/01/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071 | NA IL_31836.1* | ||
| 1/01/1841:1842, 1/01/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket geometric IL_4V9F_067 | NA IL_13730.12* | ||
| 1/01/1846:1849, 1/01/1893:1894 | Major groove minor groove platform; mini C-loop geometric IL_5J7L_316 | NA IL_09061.4* | ||
| 1/01/1864:1867, 1/01/1874:1878 | UAA/GAN related geometric IL_5J7L_317 | NA IL_81389.2* | ||
| 1/01/1933:1934, 1/01/1964:1967 | Multiple bulged bases homologous IL_7RQB_076 | NA IL_69632.1* | ||
| 1/01/1934:1945, 1/01/1961:1964 | geometric IL_4WF9_077 | NA IL_70285.1* | ||
| 1/01/2050:2052, 1/01/2617:2618 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
| 1/01/2054:2056, 1/01/2612:2615 | geometric IL_5J7L_321 | NA IL_54678.3* | ||
| 1/01/2067:2069, 1/01/2442:2443 | Single bulged U homologous IL_7RQB_080 | NA IL_83039.11* | ||
| 1/01/2070:2071, 1/01/2438:2441 | Minor groove platform homologous IL_7RQB_081 | NA IL_06437.11* | ||
| 1/01/2081:2083, 1/01/2236:2239 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
| 1/01/2085:2087, 1/01/2232:2234 | homologous IL_7RQB_083 | NA IL_01312.13* | ||
| 1/01/2103:2105, 1/01/2184:2186 | geometric IL_5TBW_016 | NA IL_01312.13* | ||
| 1/01/2105:2121, 1/01/2177:2184 | NA | NA | ||
| 1/01/2139:2141, 1/01/2150:2152 | geometric IL_4V8Q_188 | NA IL_01312.13* | ||
| 1/01/2202:2204, 1/01/2220:2221 | Single bulged U geometric IL_5J7L_331 | NA IL_21340.1* | ||
| 1/01/2350:2353, 1/01/2364:2367 | Double sheared homologous IL_7RQB_089 | NA IL_09705.7* | ||
| 1/01/2401:2403, 1/01/2414:2415 | NA | NA | ||
| 1/01/2453:2454, 1/01/2498:2500 | Single stack bend geometric IL_4WF9_089 | NA IL_04038.4* | ||
| 1/01/2454:2455, 1/01/2496:2498 | Major groove platform homologous IL_7RQB_092 | NA IL_80663.10* | ||
| 1/01/2456:2459, 1/01/2493:2495 | Major groove platform with extra pair homologous IL_7RQB_093 | NA IL_87630.5* | ||
| 1/01/2459:2462, 1/01/2488:2493 | NA | NA | ||
| 1/01/2466:2470, 1/01/2480:2484 | Triple sheared homologous IL_7RQB_095 | NA IL_56467.6* | ||
| 1/01/2507:2508, 1/01/2580:2582 | Major groove platform homologous IL_7RQB_096 | NA IL_02060.4* | ||
| 1/01/2510:2512, 1/01/2574:2578 | Isolated non-canonical cWW with bulges homologous IL_7RQB_097 | NA IL_01312.13* | ||
| 1/01/2512:2513, 1/01/2571:2574 | geometric IL_4WF9_096 | NA IL_69632.1* | ||
| 1/01/2521:2523, 1/01/2540:2544 | NA | NA | ||
| 1/01/2591:2592, 1/01/2601:2603 | Single bulged A homologous IL_7RQB_101 | NA IL_80007.16* | ||
| 1/01/2636:2640, 1/01/2774:2782 | tSH-tHS-tHW homologous IL_7RQB_102 | NA IL_34907.2* | ||
| 1/01/2652:2658, 1/01/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge homologous IL_7RQB_103 | NA IL_35110.5* | ||
| 1/01/2680:2684, 1/01/2725:2727 | C-loop homologous IL_7RQB_104 | NA IL_63596.4* | ||
| 1/01/2687:2691, 1/01/2718:2722 | homologous IL_7RQB_105 | NA IL_08296.3* | ||
| 1/01/2695:2696, 1/01/2711:2714 | Multiple bulged bases homologous IL_7RQB_106 | NA IL_77034.1* | ||
| 1/01/2737:2742, 1/01/2762:2767 | UAA/GAN with extra cWW homologous IL_7RQB_107 | NA IL_49767.4* | ||
| 1/01/2806:2811, 1/01/2889:2892 | geometric IL_5J7L_351 | NA IL_82988.1* | ||
| 1/01/2838:2839, 1/01/2878:2880 | Single bulged C homologous IL_7RQB_108 | NA IL_61258.10* | ||
| 1/01/2843:2846, 1/01/2870:2874 | homologous IL_7RQB_109 | NA IL_58764.1* | ||
| 1/01/2847:2852, 1/01/2865:2869 | homologous IL_7RQB_110 | NA IL_83162.3* | ||
| 1/02/17:18, 1/02/65:67 | NA | NA | ||
| 1/02/23:28, 1/02/56:60 | NA | NA | ||
| 1/02/30:31, 1/02/51:54 | NA | NA | ||
| 1/02/71:79, 1/02/97:105 | NA | NA | ||
| 1/A/30:32, 1/A/552:553 | NA | NA | ||
| 1/A/44:45, 1/A/396:398 | NA | NA | ||
| 1/A/47:52, 1/A/359:361 | NA | NA | ||
| 1/A/54:56, 1/A/356:357 | NA | NA | ||
| 1/A/63:66, 1/A/103:104 | NA | NA | ||
| 1/A/67:69, 1/A/99:102 | NA | NA | ||
| 1/A/70:73, 1/A/97:98 | NA | NA | ||
| 1/A/75:76, 1/A/93:95 | NA | NA | ||
| 1/A/128:131, 1/A/231:233 | NA | NA | ||
| 1/A/132:136, 1/A/227:230 | NA | NA | ||
| 1/A/144:146, 1/A/176:178 | NA | NA | ||
| 1/A/147:153, 1/A/168:175 | NA | NA | ||
| 1/A/203:206, 1/A/213:214 | NA | NA | ||
| 1/A/242:247, 1/A/277:284 | NA | NA | ||
| 1/A/249:252, 1/A/274:275 | NA | NA | ||
| 1/A/292:293, 1/A/304:308 | NA | NA | ||
| 1/A/367:369, 1/A/392:393 | NA | NA | ||
| 1/A/371:375, 1/A/389:390 | NA | NA | ||
| 1/A/375:376, 1/A/387:389 | NA | NA | ||
| 1/A/409:416, 1/A/427:433 | NA | NA | ||
| 1/A/440:442, 1/A/492:497 | NA | NA | ||
| 1/A/446:450, 1/A/483:488 | NA | NA | ||
| 1/A/450:455, 1/A/477:483 | NA | NA | ||
| 1/A/504:511, 1/A/540:541 | NA | NA | ||
| 1/A/515:521, 1/A/528:536 | NA | NA | ||
| 1/A/569:575, 1/A/880:881 | NA | NA | ||
| 1/A/580:584, 1/A/757:761 | NA | NA | ||
| 1/A/594:596, 1/A/644:645 | NA | NA | ||
| 1/A/597:598, 1/A/640:643 | NA | NA | ||
| 1/A/605:612, 1/A/628:633 | NA | NA | ||
| 1/A/654:655, 1/A/751:754 | NA | NA | ||
| 1/A/659:660, 1/A/745:747 | NA | NA | ||
| 1/A/662:666, 1/A/740:743 | NA | NA | ||
| 1/A/673:678, 1/A/712:717 | NA | NA | ||
| 1/A/684:688, 1/A/699:706 | NA | NA | ||
| 1/A/774:778, 1/A/804:805 | NA | NA | ||
| 1/A/779:783, 1/A/799:803 | NA | NA | ||
| 1/A/887:894, 1/A/905:910 | NA | NA | ||
| 1/A/922:923, 1/A/1393:1395 | NA | NA | ||
| 1/A/925:927, 1/A/1390:1391 | NA | NA | ||
| 1/A/933:935, 1/A/1380:1384 | NA | NA | ||
| 1/A/953:954, 1/A/1226:1228 | NA | NA | ||
| 1/A/993:997, 1/A/1044:1045 | NA | NA | ||
| 1/A/998:999, 1/A/1041:1043 | NA | NA | ||
| 1/A/1003:1006, 1/A/1023:1037 | NA | NA | ||
| 1/A/1048:1050, 1/A/1208:1209 | NA | NA | ||
| 1/A/1051:1056, 1/A/1204:1207 | NA | NA | ||
| 1/A/1057:1058, 1/A/1199:1203 | NA | NA | ||
| 1/A/1060:1061, 1/A/1195:1197 | NA | NA | ||
| 1/A/1061:1063, 1/A/1193:1195 | NA | NA | ||
| 1/A/1124:1128, 1/A/1144:1149 | NA | NA | ||
| 1/A/1129:1132, 1/A/1142:1143 | NA | NA | ||
| 1/A/1158:1161, 1/A/1175:1181 | NA | NA | ||
| 1/A/1247:1253, 1/A/1284:1290 | NA | NA | ||
| 1/A/1255:1258, 1/A/1277:1282 | NA | NA | ||
| 1/A/1259:1263, 1/A/1272:1276 | NA | NA | ||
| 1/A/1303:1308, 1/A/1329:1334 | NA | NA | ||
| 1/A/1399:1401, 1/A/1501:1504 | NA | NA | ||
| 1/A/1401:1404, 1/A/1497:1501 | NA | NA | ||
| 1/A/1405:1407, 1/A/1494:1496 | NA | NA | ||
| 1/A/1407:1409, 1/A/1491:1494 | NA | NA | ||
| 1/A/1412:1415, 1/A/1485:1488 | NA | NA | ||
| 1/A/1416:1419, 1/A/1481:1484 | NA | NA | ||
| 1/A/1430:1435, 1/A/1466:1470 | NA | NA | ||
| 1/A/1439:1442, 1/A/1460:1462 | NA | NA | ||
| 1/A/1445:1448, 1/A/1455:1457 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/01/30:31, 1/01/474:481, 1/01/509:510 | NA | NA | ||
| 1/01/56:57, 1/01/70:76, 1/01/110:114 | homologous J3_7RQB_002 | NA | ||
| 1/01/683:689, 1/01/773:775, 1/01/791:794 | homologous J3_7RQB_004 | NA | ||
| 1/01/698:700, 1/01/732:736, 1/01/760:763 | NA | NA | ||
| 1/01/1055:1057, 1/01/1081:1087, 1/01/1102:1104 | homologous J3_7RQB_006 | NA | ||
| 1/01/1298:1303, 1/01/1625:1627, 1/01/1639:1642 | homologous J3_7RQB_007 | NA | ||
| 1/01/1306:1309, 1/01/1605:1611, 1/01/1620:1622 | homologous J3_7RQB_008 | NA | ||
| 1/01/1344:1349, 1/01/1382:1385, 1/01/1402:1403 | NA | NA | ||
| 1/01/2091:2093, 1/01/2196:2200, 1/01/2223:2228 | homologous J3_7RQB_010 | NA | ||
| 1/01/2295:2299, 1/01/2317:2323, 1/01/2332:2337 | NA | NA | ||
| 1/01/2517:2520, 1/01/2545:2547, 1/01/2561:2567 | homologous J3_7RQB_012 | NA | ||
| 1/01/2789:2792, 1/01/2804:2806, 1/01/2892:2894 | NA | NA | ||
| 1/01/2812:2815, 1/01/2831:2836, 1/01/2882:2888 | NA | NA | ||
| 1/02/10:16, 1/02/68:70, 1/02/106:110 | NA | NA | ||
| 1/A/46:47, 1/A/361:367, 1/A/393:395 | NA | NA | ||
| 1/A/586:588, 1/A/651:654, 1/A/754:755 | NA | NA | ||
| 1/A/672:673, 1/A/717:725, 1/A/732:734 | NA | NA | ||
| 1/A/826:829, 1/A/857:861, 1/A/868:874 | NA | NA | ||
| 1/A/936:939, 1/A/1344:1350, 1/A/1372:1379 | NA | NA | ||
| 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | NA | NA | ||
| 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | NA | NA | ||
| 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | NA | NA | ||
| 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | NA | NA | ||
| 1/A/1073:1074, 1/A/1083:1087, 1/A/1098:1102 | NA | NA | ||
| 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | NA | NA | ||
| 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | NA | NA |
Problematic loops
No problematic loops
Coloring options: