6FXC Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/AA/58:69 | NA | NA | ||
| 1/AA/87:95 | homologous HL_7RQB_002 | NA HL_17926.5* | ||
| 1/AA/122:127 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
| 1/AA/136:143 | geometric HL_5J7L_154 | NA HL_93727.5* | ||
| 1/AA/159:169 | NA | NA | ||
| 1/AA/197:204 | geometric HL_5J7L_139 | NA HL_23481.5* | ||
| 1/AA/228:233 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
| 1/AA/249:255 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/AA/283:288 | geometric HL_5TBW_012 | NA HL_94386.1* | ||
| 1/AA/348:355 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
| 1/AA/362:366 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
| 1/AA/370:378 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/AA/426:440 | NA | NA | ||
| 1/AA/456:463 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/AA/508:513 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/AA/533:538 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/AA/587:594 | geometric HL_4WF9_017 | NA HL_23219.1* | ||
| 1/AA/609:618 | T-loop with 2 stacked bulged bases geometric HL_4WF9_018 | NA HL_33239.17* | ||
| 1/AA/655:661 | geometric HL_5U3G_001 | NA HL_40469.1* | ||
| 1/AA/674:679 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/AA/686:692 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
| 1/AA/757:764 | geometric HL_4WF9_003 | NA HL_62869.3* | ||
| 1/AA/789:798 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
| 1/AA/823:831 | NA | NA | ||
| 1/AA/871:876 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/AA/999:1006 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
| 1/AA/1022:1029 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
| 1/AA/1103:1123 | NA | NA | ||
| 1/AA/1214:1218 | geometric HL_4YAZ_004 | NA HL_57052.3* | ||
| 1/AA/1260:1265 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/AA/1318:1326 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/AA/1361:1367 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
| 1/AA/1400:1405 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/AA/1426:1435 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
| 1/AA/1535:1541 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
| 1/AA/1612:1615 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/AA/1656:1663 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/AA/1673:1681 | geometric HL_4WF9_039 | NA HL_42733.4* | ||
| 1/AA/1735:1740 | homologous HL_7RQB_042 | NA HL_79299.11* | ||
| 1/AA/1760:1769 | NA | NA | ||
| 1/AA/1779:1783 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/AA/1803:1815 | NA | NA | ||
| 1/AA/1833:1838 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/AA/1891:1905 | NA | NA | ||
| 1/AA/1976:1984 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/AA/2054:2063 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
| 1/AA/2169:2176 | NA | NA | ||
| 1/AA/2236:2242 | geometric HL_5J7L_185 | NA HL_16845.5* | ||
| 1/AA/2275:2283 | homologous HL_7RQB_053 | NA | ||
| 1/AA/2291:2303 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
| 1/AA/2351:2358 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/AA/2382:2389 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
| 1/AA/2401:2406 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
| 1/AA/2431:2440 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
| 1/AA/2498:2506 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
| 1/AA/2555:2562 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
| 1/AA/2578:2584 | geometric HL_4WF9_058 | NA HL_26055.6* | ||
| 1/AA/2621:2626 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/AA/2685:2690 | homologous HL_7RQB_064 | NA HL_43074.18* | ||
| 1/AA/2728:2733 | Ribsomal LSU H95 geometric HL_5J7L_198 | NA HL_67719.1* | ||
| 1/AA/2772:2786 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/AA/2819:2824 | geometric HL_4V88_198 | NA HL_30541.1* | ||
| 1/AA/2839:2847 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/AA/2876:2881 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
| 1/AB/36:42 | NA | NA | ||
| 1/AB/83:88 | NA | NA | ||
| 1/Aa/13:23 | NA | NA | ||
| 1/Aa/72:97 | NA | NA | ||
| 1/Aa/158:163 | NA | NA | ||
| 1/Aa/190:201 | NA | NA | ||
| 1/Aa/216:223 | NA | NA | ||
| 1/Aa/267:275 | NA | NA | ||
| 1/Aa/304:309 | NA | NA | ||
| 1/Aa/328:341 | NA | NA | ||
| 1/Aa/350:355 | NA | NA | ||
| 1/Aa/386:393 | NA | NA | ||
| 1/Aa/427:432 | NA | NA | ||
| 1/Aa/470:479 | NA | NA | ||
| 1/Aa/530:535 | NA | NA | ||
| 1/Aa/625:631 | NA | NA | ||
| 1/Aa/697:706 | NA | NA | ||
| 1/Aa/734:739 | NA | NA | ||
| 1/Aa/794:804 | NA | NA | ||
| 1/Aa/848:855 | NA | NA | ||
| 1/Aa/871:876 | NA | NA | ||
| 1/Aa/906:911 | NA | NA | ||
| 1/Aa/972:981 | NA | NA | ||
| 1/Aa/1021:1026 | NA | NA | ||
| 1/Aa/1038:1043 | NA | NA | ||
| 1/Aa/1087:1092 | NA | NA | ||
| 1/Aa/1100:1107 | NA | NA | ||
| 1/Aa/1144:1151 | NA | NA | ||
| 1/Aa/1174:1182 | NA | NA | ||
| 1/Aa/1275:1280 | NA | NA | ||
| 1/Aa/1324:1333 | NA | NA | ||
| 1/Aa/1366:1376 | NA | NA | ||
| 1/Aa/1459:1465 | NA | NA | ||
| 1/Aa/1526:1531 | NA | NA | ||
| 1/BA/58:69 | NA | NA | ||
| 1/BA/87:95 | homologous HL_7RQB_002 | NA HL_17926.5* | ||
| 1/BA/122:127 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
| 1/BA/136:143 | geometric HL_5J7L_154 | NA HL_93727.5* | ||
| 1/BA/159:169 | NA | NA | ||
| 1/BA/197:204 | homologous HL_7RQB_006 | NA HL_23481.5* | ||
| 1/BA/228:233 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
| 1/BA/249:255 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/BA/283:288 | geometric HL_5TBW_012 | NA HL_94386.1* | ||
| 1/BA/348:355 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
| 1/BA/362:366 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
| 1/BA/370:378 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/BA/426:440 | NA | NA | ||
| 1/BA/456:463 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/BA/508:513 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/BA/533:538 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/BA/587:594 | geometric HL_4WF9_017 | NA HL_23219.1* | ||
| 1/BA/609:618 | homologous HL_7RQB_018 | NA HL_33239.17* | ||
| 1/BA/655:661 | geometric HL_5U3G_001 | NA HL_40469.1* | ||
| 1/BA/674:679 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/BA/686:692 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
| 1/BA/757:764 | geometric HL_4WF9_003 | NA HL_62869.3* | ||
| 1/BA/789:798 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
| 1/BA/823:831 | NA | NA | ||
| 1/BA/871:876 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/BA/999:1006 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
| 1/BA/1022:1029 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
| 1/BA/1103:1123 | NA | NA | ||
| 1/BA/1214:1218 | geometric HL_4YAZ_004 | NA HL_57052.3* | ||
| 1/BA/1260:1265 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/BA/1318:1326 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/BA/1361:1367 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
| 1/BA/1400:1405 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/BA/1426:1435 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
| 1/BA/1535:1541 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
| 1/BA/1612:1615 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/BA/1656:1663 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/BA/1673:1681 | geometric HL_4WF9_039 | NA HL_42733.4* | ||
| 1/BA/1735:1740 | UNCG geometric HL_4WF9_040 | NA HL_79299.11* | ||
| 1/BA/1760:1769 | NA | NA | ||
| 1/BA/1779:1783 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/BA/1803:1815 | NA | NA | ||
| 1/BA/1833:1838 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/BA/1891:1905 | NA | NA | ||
| 1/BA/1976:1984 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/BA/2054:2063 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
| 1/BA/2169:2176 | NA | NA | ||
| 1/BA/2236:2242 | geometric HL_5J7L_185 | NA HL_16845.5* | ||
| 1/BA/2275:2283 | homologous HL_7RQB_053 | NA | ||
| 1/BA/2291:2303 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
| 1/BA/2351:2358 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/BA/2382:2389 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
| 1/BA/2401:2406 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
| 1/BA/2431:2440 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
| 1/BA/2498:2506 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
| 1/BA/2555:2562 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
| 1/BA/2578:2584 | geometric HL_4WF9_058 | NA HL_26055.6* | ||
| 1/BA/2621:2626 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/BA/2685:2690 | homologous HL_7RQB_064 | NA HL_43074.18* | ||
| 1/BA/2728:2733 | Ribsomal LSU H95 geometric HL_5J7L_198 | NA HL_67719.1* | ||
| 1/BA/2772:2786 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/BA/2819:2824 | geometric HL_4V88_198 | NA HL_30541.1* | ||
| 1/BA/2839:2847 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/BA/2876:2881 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
| 1/BB/36:42 | NA | NA | ||
| 1/BB/83:88 | NA | NA | ||
| 1/Ba/13:23 | NA | NA | ||
| 1/Ba/72:97 | NA | NA | ||
| 1/Ba/158:163 | NA | NA | ||
| 1/Ba/190:201 | NA | NA | ||
| 1/Ba/216:223 | NA | NA | ||
| 1/Ba/267:275 | NA | NA | ||
| 1/Ba/304:309 | NA | NA | ||
| 1/Ba/328:341 | NA | NA | ||
| 1/Ba/350:355 | NA | NA | ||
| 1/Ba/386:393 | NA | NA | ||
| 1/Ba/427:432 | NA | NA | ||
| 1/Ba/470:479 | NA | NA | ||
| 1/Ba/530:535 | NA | NA | ||
| 1/Ba/625:631 | NA | NA | ||
| 1/Ba/697:706 | NA | NA | ||
| 1/Ba/734:739 | NA | NA | ||
| 1/Ba/794:804 | NA | NA | ||
| 1/Ba/849:854 | NA | NA | ||
| 1/Ba/871:876 | NA | NA | ||
| 1/Ba/906:911 | NA | NA | ||
| 1/Ba/972:981 | NA | NA | ||
| 1/Ba/1021:1026 | NA | NA | ||
| 1/Ba/1038:1043 | NA | NA | ||
| 1/Ba/1087:1092 | NA | NA | ||
| 1/Ba/1100:1107 | NA | NA | ||
| 1/Ba/1144:1151 | NA | NA | ||
| 1/Ba/1174:1182 | NA | NA | ||
| 1/Ba/1275:1280 | NA | NA | ||
| 1/Ba/1324:1333 | NA | NA | ||
| 1/Ba/1366:1376 | NA | NA | ||
| 1/Ba/1459:1465 | NA | NA | ||
| 1/Ba/1526:1531 | NA | NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6FXC_026 | NA | ||
| HL_6FXC_046 | geometric HL_3IGI_004 | ||
| HL_6FXC_053 | geometric HL_2Y9H_003 | ||
| HL_6FXC_127 | NA | ||
| HL_6FXC_147 | geometric HL_3IGI_004 | ||
| HL_6FXC_154 | geometric HL_2Y9H_003 |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/AA/24:30, 1/AA/555:561 | Triple sheared with non-canonical cWW homologous IL_7RQB_001 | NA IL_66414.5* | ||
| 1/AA/36:37, 1/AA/488:490 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
| 1/AA/42:44, 1/AA/480:483 | Minor groove platform with extra cWW geometric IL_4WF9_003 | NA IL_87332.1* | ||
| 1/AA/80:85, 1/AA/97:105 | Kink-turn geometric IL_4LFB_031 | NA IL_37722.1* | ||
| 1/AA/152:153, 1/AA/175:177 | Major groove platform geometric IL_3NKB_002 | NA IL_80663.10* | ||
| 1/AA/157:159, 1/AA/169:171 | Isolated cWH basepair geometric IL_6F4H_001 | NA IL_42589.6* | ||
| 1/AA/186:187, 1/AA/215:217 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
| 1/AA/190:197, 1/AA/204:212 | 9x8 Sarcin-Ricin; G-bulge geometric IL_4WF9_008 | NA IL_61812.1* | ||
| 1/AA/241:248, 1/AA/256:262 | 8x7 Sarcin-Ricin; G-bulge geometric IL_4WF9_009 | NA IL_04346.5* | ||
| 1/AA/305:306, 1/AA/409:412 | Minor groove platform geometric IL_7RQB_073 | NA IL_06437.11* | ||
| 1/AA/319:327, 1/AA/399:400 | NA | NA | ||
| 1/AA/336:338, 1/AA/386:390 | homologous IL_7RQB_013 | NA IL_69440.1* | ||
| 1/AA/527:530, 1/AA/541:554 | homologous IL_7RQB_014 | NA IL_60992.5* | ||
| 1/AA/581:584, 1/AA/597:600 | Double sheared geometric IL_4WF9_016 | NA IL_09705.7* | ||
| 1/AA/607:609, 1/AA/618:620 | homologous IL_7RQB_015 | NA IL_01312.13* | ||
| 1/AA/638:640, 1/AA/705:707 | geometric IL_4WF9_018 | NA IL_01312.13* | ||
| 1/AA/649:653, 1/AA/663:667 | AAA cross-strand stack homologous IL_7RQB_016 | NA IL_56467.6* | ||
| 1/AA/717:719, 1/AA/851:853 | geometric IL_4WF9_020 | NA IL_01312.13* | ||
| 1/AA/719:723, 1/AA/844:851 | homologous IL_7RQB_018 | NA IL_17470.5* | ||
| 1/AA/742:743, 1/AA/808:810 | Single bulged A homologous IL_7RQB_019 | NA IL_80007.16* | ||
| 1/AA/747:748, 1/AA/773:775 | Single bulged G homologous IL_7RQB_020 | NA IL_59137.10* | ||
| 1/AA/748:752, 1/AA/769:773 | Triple sheared geometric IL_7RQB_021 | NA IL_56467.6* | ||
| 1/AA/783:785, 1/AA/802:803 | Major groove platform geometric IL_4WF9_026 | NA IL_80663.10* | ||
| 1/AA/820:822, 1/AA/832:836 | Multiple bulged bases homologous IL_7RQB_023 | NA IL_90991.5* | ||
| 1/AA/881:883, 1/AA/984:987 | NA | NA | ||
| 1/AA/889:893, 1/AA/975:978 | geometric IL_4WF9_029 | NA IL_06300.1* | ||
| 1/AA/897:898, 1/AA/969:971 | NA | NA | ||
| 1/AA/901:907, 1/AA/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge geometric IL_4WF9_031 | NA IL_93830.2* | ||
| 1/AA/907:908, 1/AA/958:960 | Minor groove platform homologous IL_7RQB_028 | NA IL_06437.11* | ||
| 1/AA/909:913, 1/AA/954:957 | C-loop homologous IL_7RQB_029 | NA IL_63596.4* | ||
| 1/AA/920:924, 1/AA/943:947 | geometric IL_5TBW_121 | NA IL_05867.1* | ||
| 1/AA/1038:1040, 1/AA/1203:1204 | Single bulged C homologous IL_7RQB_035 | NA IL_61258.10* | ||
| 1/AA/1042:1046, 1/AA/1197:1201 | UAA/GAN homologous IL_7RQB_036 | NA IL_53523.5* | ||
| 1/AA/1048:1055, 1/AA/1194:1195 | SSU/LSU pseudoknot homologous IL_7RQB_037 | NA IL_15861.6* | ||
| 1/AA/1055:1057, 1/AA/1193:1194 | Single bulged U geometric IL_5J7L_279 | NA IL_83039.11* | ||
| 1/AA/1062:1068, 1/AA/1184:1188 | geometric IL_4WF9_039 | NA IL_57188.3* | ||
| 1/AA/1068:1074, 1/AA/1168:1184 | geometric IL_4WF9_040 | NA IL_22615.1* | ||
| 1/AA/1075:1078, 1/AA/1165:1167 | Other IL geometric IL_5TBW_064 | NA IL_87630.5* | ||
| 1/AA/1081:1083, 1/AA/1160:1162 | Isolated cWH basepair geometric IL_4J50_003 | NA IL_01312.13* | ||
| 1/AA/1235:1237, 1/AA/1285:1288 | Isolated cWS basepair homologous IL_7RQB_045 | NA IL_67621.5* | ||
| 1/AA/1243:1245, 1/AA/1277:1279 | Isolated cWH basepair geometric IL_4WF9_045 | NA IL_42589.6* | ||
| 1/AA/1246:1253, 1/AA/1272:1276 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
| 1/AA/1257:1259, 1/AA/1266:1268 | Intercalated cWW geometric IL_4WF9_047 | NA IL_04038.4* | ||
| 1/AA/1300:1307, 1/AA/2038:2044 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049 | NA IL_04346.5* | ||
| 1/AA/1356:1360, 1/AA/1368:1370 | Major groove minor groove platform with tHH geometric IL_4WF9_050 | NA IL_28060.3* | ||
| 1/AA/1388:1392, 1/AA/1413:1417 | UAA/GAN geometric IL_5J7L_292 | NA IL_34907.2* | ||
| 1/AA/1394:1398, 1/AA/1407:1411 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
| 1/AA/1447:1461, 1/AA/1627:1636 | NA | NA | ||
| 1/AA/1461:1465, 1/AA/1624:1627 | tSH-tHW geometric IL_7RQB_057 | NA IL_08757.3* | ||
| 1/AA/1476:1480, 1/AA/1604:1608 | NA | NA | ||
| 1/AA/1481:1485, 1/AA/1598:1603 | NA | NA | ||
| 1/AA/1485:1511, 1/AA/1570:1598 | NA | NA | ||
| 1/AA/1511:1516, 1/AA/1564:1570 | geometric IL_4WF9_058 | NA IL_94518.4* | ||
| 1/AA/1518:1522, 1/AA/1558:1562 | NA | NA | ||
| 1/AA/1523:1526, 1/AA/1549:1557 | NA | NA | ||
| 1/AA/1532:1534, 1/AA/1542:1543 | NA | NA | ||
| 1/AA/1695:1700, 1/AA/2031:2033 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
| 1/AA/1707:1709, 1/AA/2022:2024 | Isolated tWW turn homologous IL_7RQB_065 | NA IL_54997.5* | ||
| 1/AA/1710:1713, 1/AA/2020:2021 | Major groove platform; stack outside cWW homologous IL_7RQB_066 | NA IL_80663.10* | ||
| 1/AA/1713:1718, 1/AA/2017:2020 | Intercalated tWH geometric IL_4WF9_065 | NA IL_01312.13* | ||
| 1/AA/1730:1735, 1/AA/1740:1746 | tSH-tSH-tHH-tHS geometric IL_4V9F_063 | NA IL_66584.5* | ||
| 1/AA/1756:1759, 1/AA/1770:1773 | NA | NA | ||
| 1/AA/1797:1798, 1/AA/2007:2009 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
| 1/AA/1825:1831, 1/AA/1840:1848 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
| 1/AA/1864:1867, 1/AA/1929:1930 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071 | NA IL_31836.1* | ||
| 1/AA/1868:1869, 1/AA/1925:1928 | Major groove outside cWW, minor groove, intercalation pocket geometric IL_5J7L_315 | NA IL_13730.12* | ||
| 1/AA/1873:1876, 1/AA/1920:1921 | NA | NA | ||
| 1/AA/1878:1882, 1/AA/1914:1918 | UAA/GAN with extra pair homologous IL_7RQB_074 | NA IL_34907.2* | ||
| 1/AA/1883:1887, 1/AA/1909:1913 | Triple sheared homologous IL_7RQB_075 | NA IL_56467.6* | ||
| 1/AA/1961:1972, 1/AA/1988:1991 | geometric IL_7A0S_072 | NA IL_07097.1* | ||
| 1/AA/2077:2079, 1/AA/2644:2645 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
| 1/AA/2081:2083, 1/AA/2639:2642 | NA | NA | ||
| 1/AA/2094:2096, 1/AA/2469:2470 | Single bulged U homologous IL_7RQB_080 | NA IL_83039.11* | ||
| 1/AA/2097:2098, 1/AA/2465:2468 | Minor groove platform homologous IL_7RQB_081 | NA IL_06437.11* | ||
| 1/AA/2108:2110, 1/AA/2263:2266 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
| 1/AA/2123:2125, 1/AA/2218:2220 | geometric IL_4P3T_006 | NA IL_01312.13* | ||
| 1/AA/2156:2169, 1/AA/2176:2186 | NA | NA | ||
| 1/AA/2229:2231, 1/AA/2247:2248 | Single bulged G geometric IL_3NDB_004 | NA IL_59137.10* | ||
| 1/AA/2324:2326, 1/AA/2344:2348 | Isolated tHS basepair with bulges geometric IL_5TBW_099 | NA IL_38958.6* | ||
| 1/AA/2377:2380, 1/AA/2391:2394 | Double sheared homologous IL_7RQB_089 | NA IL_09705.7* | ||
| 1/AA/2428:2430, 1/AA/2441:2442 | Single bulged U geometric IL_2R8S_004 | NA IL_83039.11* | ||
| 1/AA/2480:2481, 1/AA/2525:2527 | Single stack bend geometric IL_4WF9_089 | NA IL_04038.4* | ||
| 1/AA/2481:2482, 1/AA/2523:2525 | Major groove platform homologous IL_7RQB_092 | NA IL_80663.10* | ||
| 1/AA/2484:2486, 1/AA/2520:2521 | Major groove platform geometric IL_4WF9_091 | NA IL_80663.10* | ||
| 1/AA/2486:2488, 1/AA/2516:2520 | Major groove minor groove platform with extra cWW geometric IL_7RQB_094 | NA IL_96042.4* | ||
| 1/AA/2493:2497, 1/AA/2507:2511 | Triple sheared homologous IL_7RQB_095 | NA IL_56467.6* | ||
| 1/AA/2534:2535, 1/AA/2607:2609 | Major groove platform homologous IL_7RQB_096 | NA IL_02060.4* | ||
| 1/AA/2537:2539, 1/AA/2601:2605 | Isolated non-canonical cWW with bulges homologous IL_7RQB_097 | NA IL_01312.13* | ||
| 1/AA/2539:2540, 1/AA/2598:2601 | geometric IL_5J7L_341 | NA IL_44093.1* | ||
| 1/AA/2549:2550, 1/AA/2567:2570 | Minor groove platform with intercalation homologous IL_7RQB_099 | NA IL_95601.1* | ||
| 1/AA/2618:2619, 1/AA/2628:2630 | Single bulged A geometric IL_4V9F_090 | NA IL_80007.16* | ||
| 1/AA/2663:2667, 1/AA/2801:2809 | tSH-tHS-tHW homologous IL_7RQB_102 | NA IL_34907.2* | ||
| 1/AA/2679:2685, 1/AA/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge geometric IL_7RQB_103 | NA IL_35110.5* | ||
| 1/AA/2707:2711, 1/AA/2752:2754 | C-loop homologous IL_7RQB_104 | NA IL_63596.4* | ||
| 1/AA/2714:2718, 1/AA/2745:2749 | homologous IL_7RQB_105 | NA IL_08296.3* | ||
| 1/AA/2722:2723, 1/AA/2738:2741 | Multiple bulged bases homologous IL_7RQB_106 | NA IL_77034.1* | ||
| 1/AA/2764:2769, 1/AA/2789:2794 | UAA/GAN with extra cWW geometric IL_5J7L_350 | NA IL_49767.4* | ||
| 1/AA/2858:2859, 1/AA/2898:2900 | Single bulged C homologous IL_7RQB_108 | NA IL_61258.10* | ||
| 1/AA/2863:2865, 1/AA/2891:2894 | geometric IL_4WF9_107 | NA IL_02284.3* | ||
| 1/AA/2867:2872, 1/AA/2885:2889 | homologous IL_7RQB_110 | NA IL_83162.3* | ||
| 1/AB/15:16, 1/AB/63:65 | NA | NA | ||
| 1/AB/21:27, 1/AB/53:58 | NA | NA | ||
| 1/AB/28:29, 1/AB/49:52 | NA | NA | ||
| 1/AB/32:36, 1/AB/42:46 | NA | NA | ||
| 1/AB/69:77, 1/AB/94:102 | NA | NA | ||
| 1/AB/78:80, 1/AB/91:93 | NA | NA | ||
| 1/Aa/31:33, 1/Aa/560:561 | NA | NA | ||
| 1/Aa/45:46, 1/Aa/404:406 | NA | NA | ||
| 1/Aa/48:53, 1/Aa/367:369 | NA | NA | ||
| 1/Aa/54:57, 1/Aa/364:366 | NA | NA | ||
| 1/Aa/64:67, 1/Aa/102:103 | NA | NA | ||
| 1/Aa/68:71, 1/Aa/98:101 | NA | NA | ||
| 1/Aa/128:131, 1/Aa/239:240 | NA | NA | ||
| 1/Aa/132:136, 1/Aa/235:238 | NA | NA | ||
| 1/Aa/147:153, 1/Aa/168:175 | NA | NA | ||
| 1/Aa/187:190, 1/Aa/201:203 | NA | NA | ||
| 1/Aa/250:255, 1/Aa/285:292 | NA | NA | ||
| 1/Aa/256:261, 1/Aa/281:284 | NA | NA | ||
| 1/Aa/300:301, 1/Aa/312:316 | NA | NA | ||
| 1/Aa/375:377, 1/Aa/400:401 | NA | NA | ||
| 1/Aa/379:383, 1/Aa/397:398 | NA | NA | ||
| 1/Aa/383:384, 1/Aa/395:397 | NA | NA | ||
| 1/Aa/417:427, 1/Aa/432:441 | NA | NA | ||
| 1/Aa/454:458, 1/Aa/491:496 | NA | NA | ||
| 1/Aa/512:519, 1/Aa/548:549 | NA | NA | ||
| 1/Aa/523:529, 1/Aa/536:544 | NA | NA | ||
| 1/Aa/577:583, 1/Aa/889:890 | NA | NA | ||
| 1/Aa/588:592, 1/Aa/765:769 | NA | NA | ||
| 1/Aa/598:600, 1/Aa/655:657 | NA | NA | ||
| 1/Aa/602:604, 1/Aa/652:653 | NA | NA | ||
| 1/Aa/605:606, 1/Aa/648:651 | NA | NA | ||
| 1/Aa/612:620, 1/Aa/636:642 | NA | NA | ||
| 1/Aa/662:663, 1/Aa/759:762 | NA | NA | ||
| 1/Aa/665:666, 1/Aa/755:757 | NA | NA | ||
| 1/Aa/669:674, 1/Aa/748:752 | NA | NA | ||
| 1/Aa/681:686, 1/Aa/720:725 | NA | NA | ||
| 1/Aa/692:696, 1/Aa/707:714 | NA | NA | ||
| 1/Aa/782:787, 1/Aa/811:813 | NA | NA | ||
| 1/Aa/787:791, 1/Aa/807:811 | NA | NA | ||
| 1/Aa/896:903, 1/Aa/914:919 | NA | NA | ||
| 1/Aa/931:932, 1/Aa/1403:1405 | NA | NA | ||
| 1/Aa/934:936, 1/Aa/1400:1401 | NA | NA | ||
| 1/Aa/942:944, 1/Aa/1390:1394 | NA | NA | ||
| 1/Aa/962:963, 1/Aa/1236:1238 | NA | NA | ||
| 1/Aa/1002:1006, 1/Aa/1055:1056 | NA | NA | ||
| 1/Aa/1006:1010, 1/Aa/1050:1055 | NA | NA | ||
| 1/Aa/1059:1061, 1/Aa/1218:1219 | NA | NA | ||
| 1/Aa/1062:1067, 1/Aa/1214:1217 | NA | NA | ||
| 1/Aa/1068:1069, 1/Aa/1209:1213 | NA | NA | ||
| 1/Aa/1071:1072, 1/Aa/1205:1207 | NA | NA | ||
| 1/Aa/1072:1074, 1/Aa/1203:1205 | NA | NA | ||
| 1/Aa/1257:1263, 1/Aa/1294:1300 | NA | NA | ||
| 1/Aa/1265:1268, 1/Aa/1287:1292 | NA | NA | ||
| 1/Aa/1269:1274, 1/Aa/1281:1286 | NA | NA | ||
| 1/Aa/1313:1318, 1/Aa/1339:1344 | NA | NA | ||
| 1/Aa/1409:1411, 1/Aa/1512:1515 | NA | NA | ||
| 1/Aa/1411:1414, 1/Aa/1508:1512 | NA | NA | ||
| 1/Aa/1415:1417, 1/Aa/1505:1507 | NA | NA | ||
| 1/Aa/1417:1419, 1/Aa/1502:1505 | NA | NA | ||
| 1/Aa/1422:1424, 1/Aa/1497:1499 | NA | NA | ||
| 1/Aa/1426:1429, 1/Aa/1492:1495 | NA | NA | ||
| 1/Aa/1434:1437, 1/Aa/1484:1487 | NA | NA | ||
| 1/Aa/1440:1445, 1/Aa/1477:1481 | NA | NA | ||
| 1/Aa/1445:1447, 1/Aa/1475:1477 | NA | NA | ||
| 1/Aa/1450:1453, 1/Aa/1470:1472 | NA | NA | ||
| 1/Aa/1455:1458, 1/Aa/1466:1468 | NA | NA | ||
| 1/BA/24:30, 1/BA/555:561 | Triple sheared with non-canonical cWW homologous IL_7RQB_001 | NA IL_66414.5* | ||
| 1/BA/36:37, 1/BA/488:490 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
| 1/BA/42:44, 1/BA/480:483 | Minor groove platform with extra cWW geometric IL_4WF9_003 | NA IL_87332.1* | ||
| 1/BA/80:85, 1/BA/97:105 | Kink-turn geometric IL_4LFB_031 | NA IL_37722.1* | ||
| 1/BA/152:153, 1/BA/175:177 | Major groove platform geometric IL_3NKB_002 | NA IL_80663.10* | ||
| 1/BA/157:159, 1/BA/169:171 | Isolated cWH basepair geometric IL_6F4H_001 | NA IL_42589.6* | ||
| 1/BA/186:187, 1/BA/215:217 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
| 1/BA/190:197, 1/BA/204:212 | 9x8 Sarcin-Ricin; G-bulge geometric IL_4WF9_008 | NA IL_61812.1* | ||