Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/AA/58:69NANA
1/AA/87:95
homologous
HL_7RQB_002
NA

HL_17926.5*
1/AA/122:127
homologous
HL_7RQB_003
NA

HL_62869.3*
1/AA/136:143
geometric
HL_5J7L_154
NA

HL_93727.5*
1/AA/159:169NANA
1/AA/197:204
geometric
HL_5J7L_139
NA

HL_23481.5*
1/AA/228:233
homologous
HL_7RQB_007
NA

HL_06569.2*
1/AA/249:255
homologous
HL_7RQB_008
NA

HL_67216.5*
1/AA/283:288
geometric
HL_5TBW_012
NA

HL_94386.1*
1/AA/348:355
homologous
HL_7RQB_010
NA

HL_68493.6*
1/AA/362:366
homologous
HL_7RQB_011
NA

HL_98557.5*
1/AA/370:378
homologous
HL_7RQB_012
NA

HL_08002.6*
1/AA/426:440NANA
1/AA/456:463
homologous
HL_7RQB_014
NA

HL_32512.8*
1/AA/508:513
homologous
HL_7RQB_015
NA

HL_43074.18*
1/AA/533:538
homologous
HL_7RQB_016
NA

HL_43074.18*
1/AA/587:594
geometric
HL_4WF9_017
NA

HL_23219.1*
1/AA/609:618T-loop with 2 stacked bulged bases
geometric
HL_4WF9_018
NA

HL_33239.17*
1/AA/655:661
geometric
HL_5U3G_001
NA

HL_40469.1*
1/AA/674:679
homologous
HL_7RQB_020
NA

HL_43074.18*
1/AA/686:692
homologous
HL_7RQB_021
NA

HL_02361.6*
1/AA/757:764
geometric
HL_4WF9_003
NA

HL_62869.3*
1/AA/789:798
homologous
HL_7RQB_023
NA

HL_39334.5*
1/AA/823:831NANA
1/AA/871:876
homologous
HL_7RQB_025
NA

HL_15942.5*
1/AA/999:1006
homologous
HL_7RQB_027
NA

HL_43074.18*
1/AA/1022:1029
homologous
HL_7RQB_028
NA

HL_72451.5*
1/AA/1103:1123NANA
1/AA/1214:1218
geometric
HL_4YAZ_004
NA

HL_57052.3*
1/AA/1260:1265
homologous
HL_7RQB_032
NA

HL_43074.18*
1/AA/1318:1326
homologous
HL_7RQB_033
NA

HL_33239.17*
1/AA/1361:1367
homologous
HL_7RQB_034
NA

HL_86880.5*
1/AA/1400:1405
homologous
HL_7RQB_035
NA

HL_43074.18*
1/AA/1426:1435
homologous
HL_7RQB_036
NA

HL_78457.4*
1/AA/1535:1541
homologous
HL_7RQB_038
NA

HL_86880.5*
1/AA/1612:1615
homologous
HL_7RQB_039
NA

HL_69353.7*
1/AA/1656:1663
homologous
HL_7RQB_040
NA

HL_66171.3*
1/AA/1673:1681
geometric
HL_4WF9_039
NA

HL_42733.4*
1/AA/1735:1740
homologous
HL_7RQB_042
NA

HL_79299.11*
1/AA/1760:1769NANA
1/AA/1779:1783
homologous
HL_7RQB_044
NA

HL_79272.3*
1/AA/1803:1815NANA
1/AA/1833:1838
homologous
HL_7RQB_046
NA

HL_43074.18*
1/AA/1891:1905NANA
1/AA/1976:1984
homologous
HL_7RQB_049
NA

HL_53760.4*
1/AA/2054:2063
homologous
HL_7RQB_050
NA

HL_90642.5*
1/AA/2169:2176NANA
1/AA/2236:2242
geometric
HL_5J7L_185
NA

HL_16845.5*
1/AA/2275:2283
homologous
HL_7RQB_053
NA
1/AA/2291:2303
homologous
HL_7RQB_054
NA

HL_19870.5*
1/AA/2351:2358
homologous
HL_7RQB_056
NA

HL_46142.8*
1/AA/2382:2389
homologous
HL_7RQB_057
NA

HL_93727.5*
1/AA/2401:2406
homologous
HL_7RQB_058
NA

HL_43074.18*
1/AA/2431:2440
homologous
HL_7RQB_059
NA

HL_48376.4*
1/AA/2498:2506
homologous
HL_7RQB_060
NA

HL_36421.5*
1/AA/2555:2562
homologous
HL_7RQB_061
NA

HL_92681.5*
1/AA/2578:2584
geometric
HL_4WF9_058
NA

HL_26055.6*
1/AA/2621:2626
homologous
HL_7RQB_063
NA

HL_43074.18*
1/AA/2685:2690
homologous
HL_7RQB_064
NA

HL_43074.18*
1/AA/2728:2733Ribsomal LSU H95
geometric
HL_5J7L_198
NA

HL_67719.1*
1/AA/2772:2786
homologous
HL_7RQB_066
NA

HL_56677.5*
1/AA/2819:2824
geometric
HL_4V88_198
NA

HL_30541.1*
1/AA/2839:2847
homologous
HL_7RQB_068
NA

HL_05018.6*
1/AA/2876:2881
homologous
HL_7RQB_069
NA

HL_43074.18*
1/AB/36:42NANA
1/AB/83:88NANA
1/Aa/13:23NANA
1/Aa/72:97NANA
1/Aa/158:163NANA
1/Aa/190:201NANA
1/Aa/216:223NANA
1/Aa/267:275NANA
1/Aa/304:309NANA
1/Aa/328:341NANA
1/Aa/350:355NANA
1/Aa/386:393NANA
1/Aa/427:432NANA
1/Aa/470:479NANA
1/Aa/530:535NANA
1/Aa/625:631NANA
1/Aa/697:706NANA
1/Aa/734:739NANA
1/Aa/794:804NANA
1/Aa/848:855NANA
1/Aa/871:876NANA
1/Aa/906:911NANA
1/Aa/972:981NANA
1/Aa/1021:1026NANA
1/Aa/1038:1043NANA
1/Aa/1087:1092NANA
1/Aa/1100:1107NANA
1/Aa/1144:1151NANA
1/Aa/1174:1182NANA
1/Aa/1275:1280NANA
1/Aa/1324:1333NANA
1/Aa/1366:1376NANA
1/Aa/1459:1465NANA
1/Aa/1526:1531NANA
1/BA/58:69NANA
1/BA/87:95
homologous
HL_7RQB_002
NA

HL_17926.5*
1/BA/122:127
homologous
HL_7RQB_003
NA

HL_62869.3*
1/BA/136:143
geometric
HL_5J7L_154
NA

HL_93727.5*
1/BA/159:169NANA
1/BA/197:204
homologous
HL_7RQB_006
NA

HL_23481.5*
1/BA/228:233
homologous
HL_7RQB_007
NA

HL_06569.2*
1/BA/249:255
homologous
HL_7RQB_008
NA

HL_67216.5*
1/BA/283:288
geometric
HL_5TBW_012
NA

HL_94386.1*
1/BA/348:355
homologous
HL_7RQB_010
NA

HL_68493.6*
1/BA/362:366
homologous
HL_7RQB_011
NA

HL_98557.5*
1/BA/370:378
homologous
HL_7RQB_012
NA

HL_08002.6*
1/BA/426:440NANA
1/BA/456:463
homologous
HL_7RQB_014
NA

HL_32512.8*
1/BA/508:513
homologous
HL_7RQB_015
NA

HL_43074.18*
1/BA/533:538
homologous
HL_7RQB_016
NA

HL_43074.18*
1/BA/587:594
geometric
HL_4WF9_017
NA

HL_23219.1*
1/BA/609:618
homologous
HL_7RQB_018
NA

HL_33239.17*
1/BA/655:661
geometric
HL_5U3G_001
NA

HL_40469.1*
1/BA/674:679
homologous
HL_7RQB_020
NA

HL_43074.18*
1/BA/686:692
homologous
HL_7RQB_021
NA

HL_02361.6*
1/BA/757:764
geometric
HL_4WF9_003
NA

HL_62869.3*
1/BA/789:798
homologous
HL_7RQB_023
NA

HL_39334.5*
1/BA/823:831NANA
1/BA/871:876
homologous
HL_7RQB_025
NA

HL_15942.5*
1/BA/999:1006
homologous
HL_7RQB_027
NA

HL_43074.18*
1/BA/1022:1029
homologous
HL_7RQB_028
NA

HL_72451.5*
1/BA/1103:1123NANA
1/BA/1214:1218
geometric
HL_4YAZ_004
NA

HL_57052.3*
1/BA/1260:1265
homologous
HL_7RQB_032
NA

HL_43074.18*
1/BA/1318:1326
homologous
HL_7RQB_033
NA

HL_33239.17*
1/BA/1361:1367
homologous
HL_7RQB_034
NA

HL_86880.5*
1/BA/1400:1405
homologous
HL_7RQB_035
NA

HL_43074.18*
1/BA/1426:1435
homologous
HL_7RQB_036
NA

HL_78457.4*
1/BA/1535:1541
homologous
HL_7RQB_038
NA

HL_86880.5*
1/BA/1612:1615
homologous
HL_7RQB_039
NA

HL_69353.7*
1/BA/1656:1663
homologous
HL_7RQB_040
NA

HL_66171.3*
1/BA/1673:1681
geometric
HL_4WF9_039
NA

HL_42733.4*
1/BA/1735:1740UNCG
geometric
HL_4WF9_040
NA

HL_79299.11*
1/BA/1760:1769NANA
1/BA/1779:1783
homologous
HL_7RQB_044
NA

HL_79272.3*
1/BA/1803:1815NANA
1/BA/1833:1838
homologous
HL_7RQB_046
NA

HL_43074.18*
1/BA/1891:1905NANA
1/BA/1976:1984
homologous
HL_7RQB_049
NA

HL_53760.4*
1/BA/2054:2063
homologous
HL_7RQB_050
NA

HL_90642.5*
1/BA/2169:2176NANA
1/BA/2236:2242
geometric
HL_5J7L_185
NA

HL_16845.5*
1/BA/2275:2283
homologous
HL_7RQB_053
NA
1/BA/2291:2303
homologous
HL_7RQB_054
NA

HL_19870.5*
1/BA/2351:2358
homologous
HL_7RQB_056
NA

HL_46142.8*
1/BA/2382:2389
homologous
HL_7RQB_057
NA

HL_93727.5*
1/BA/2401:2406
homologous
HL_7RQB_058
NA

HL_43074.18*
1/BA/2431:2440
homologous
HL_7RQB_059
NA

HL_48376.4*
1/BA/2498:2506
homologous
HL_7RQB_060
NA

HL_36421.5*
1/BA/2555:2562
homologous
HL_7RQB_061
NA

HL_92681.5*
1/BA/2578:2584
geometric
HL_4WF9_058
NA

HL_26055.6*
1/BA/2621:2626
homologous
HL_7RQB_063
NA

HL_43074.18*
1/BA/2685:2690
homologous
HL_7RQB_064
NA

HL_43074.18*
1/BA/2728:2733Ribsomal LSU H95
geometric
HL_5J7L_198
NA

HL_67719.1*
1/BA/2772:2786
homologous
HL_7RQB_066
NA

HL_56677.5*
1/BA/2819:2824
geometric
HL_4V88_198
NA

HL_30541.1*
1/BA/2839:2847
homologous
HL_7RQB_068
NA

HL_05018.6*
1/BA/2876:2881
homologous
HL_7RQB_069
NA

HL_43074.18*
1/BB/36:42NANA
1/BB/83:88NANA
1/Ba/13:23NANA
1/Ba/72:97NANA
1/Ba/158:163NANA
1/Ba/190:201NANA
1/Ba/216:223NANA
1/Ba/267:275NANA
1/Ba/304:309NANA
1/Ba/328:341NANA
1/Ba/350:355NANA
1/Ba/386:393NANA
1/Ba/427:432NANA
1/Ba/470:479NANA
1/Ba/530:535NANA
1/Ba/625:631NANA
1/Ba/697:706NANA
1/Ba/734:739NANA
1/Ba/794:804NANA
1/Ba/849:854NANA
1/Ba/871:876NANA
1/Ba/906:911NANA
1/Ba/972:981NANA
1/Ba/1021:1026NANA
1/Ba/1038:1043NANA
1/Ba/1087:1092NANA
1/Ba/1100:1107NANA
1/Ba/1144:1151NANA
1/Ba/1174:1182NANA
1/Ba/1275:1280NANA
1/Ba/1324:1333NANA
1/Ba/1366:1376NANA
1/Ba/1459:1465NANA
1/Ba/1526:1531NANA

Problematic loops

#loop idProblemSequence
HL_6FXC_026NA
HL_6FXC_046
geometric
HL_3IGI_004
HL_6FXC_053
geometric
HL_2Y9H_003
HL_6FXC_127NA
HL_6FXC_147
geometric
HL_3IGI_004
HL_6FXC_154
geometric
HL_2Y9H_003

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/AA/24:30,
1/AA/555:561
Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA

IL_66414.5*
1/AA/36:37,
1/AA/488:490
Single bulged A
homologous
IL_7RQB_002
NA

IL_80007.16*
1/AA/42:44,
1/AA/480:483
Minor groove platform with extra cWW
geometric
IL_4WF9_003
NA

IL_87332.1*
1/AA/80:85,
1/AA/97:105
Kink-turn
geometric
IL_4LFB_031
NA

IL_37722.1*
1/AA/152:153,
1/AA/175:177
Major groove platform
geometric
IL_3NKB_002
NA

IL_80663.10*
1/AA/157:159,
1/AA/169:171
Isolated cWH basepair
geometric
IL_6F4H_001
NA

IL_42589.6*
1/AA/186:187,
1/AA/215:217
Single stack bend
homologous
IL_7RQB_005
NA

IL_04038.4*
1/AA/190:197,
1/AA/204:212
9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
NA

IL_61812.1*
1/AA/241:248,
1/AA/256:262
8x7 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_009
NA

IL_04346.5*
1/AA/305:306,
1/AA/409:412
Minor groove platform
geometric
IL_7RQB_073
NA

IL_06437.11*
1/AA/319:327,
1/AA/399:400
NANA
1/AA/336:338,
1/AA/386:390

homologous
IL_7RQB_013
NA

IL_69440.1*
1/AA/527:530,
1/AA/541:554

homologous
IL_7RQB_014
NA

IL_60992.5*
1/AA/581:584,
1/AA/597:600
Double sheared
geometric
IL_4WF9_016
NA

IL_09705.7*
1/AA/607:609,
1/AA/618:620

homologous
IL_7RQB_015
NA

IL_01312.13*
1/AA/638:640,
1/AA/705:707

geometric
IL_4WF9_018
NA

IL_01312.13*
1/AA/649:653,
1/AA/663:667
AAA cross-strand stack
homologous
IL_7RQB_016
NA

IL_56467.6*
1/AA/717:719,
1/AA/851:853

geometric
IL_4WF9_020
NA

IL_01312.13*
1/AA/719:723,
1/AA/844:851

homologous
IL_7RQB_018
NA

IL_17470.5*
1/AA/742:743,
1/AA/808:810
Single bulged A
homologous
IL_7RQB_019
NA

IL_80007.16*
1/AA/747:748,
1/AA/773:775
Single bulged G
homologous
IL_7RQB_020
NA

IL_59137.10*
1/AA/748:752,
1/AA/769:773
Triple sheared
geometric
IL_7RQB_021
NA

IL_56467.6*
1/AA/783:785,
1/AA/802:803
Major groove platform
geometric
IL_4WF9_026
NA

IL_80663.10*
1/AA/820:822,
1/AA/832:836
Multiple bulged bases
homologous
IL_7RQB_023
NA

IL_90991.5*
1/AA/881:883,
1/AA/984:987
NANA
1/AA/889:893,
1/AA/975:978

geometric
IL_4WF9_029
NA

IL_06300.1*
1/AA/897:898,
1/AA/969:971
NANA
1/AA/901:907,
1/AA/960:966
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_4WF9_031
NA

IL_93830.2*
1/AA/907:908,
1/AA/958:960
Minor groove platform
homologous
IL_7RQB_028
NA

IL_06437.11*
1/AA/909:913,
1/AA/954:957
C-loop
homologous
IL_7RQB_029
NA

IL_63596.4*
1/AA/920:924,
1/AA/943:947

geometric
IL_5TBW_121
NA

IL_05867.1*
1/AA/1038:1040,
1/AA/1203:1204
Single bulged C
homologous
IL_7RQB_035
NA

IL_61258.10*
1/AA/1042:1046,
1/AA/1197:1201
UAA/GAN
homologous
IL_7RQB_036
NA

IL_53523.5*
1/AA/1048:1055,
1/AA/1194:1195
SSU/LSU pseudoknot
homologous
IL_7RQB_037
NA

IL_15861.6*
1/AA/1055:1057,
1/AA/1193:1194
Single bulged U
geometric
IL_5J7L_279
NA

IL_83039.11*
1/AA/1062:1068,
1/AA/1184:1188

geometric
IL_4WF9_039
NA

IL_57188.3*
1/AA/1068:1074,
1/AA/1168:1184

geometric
IL_4WF9_040
NA

IL_22615.1*
1/AA/1075:1078,
1/AA/1165:1167
Other IL
geometric
IL_5TBW_064
NA

IL_87630.5*
1/AA/1081:1083,
1/AA/1160:1162
Isolated cWH basepair
geometric
IL_4J50_003
NA

IL_01312.13*
1/AA/1235:1237,
1/AA/1285:1288
Isolated cWS basepair
homologous
IL_7RQB_045
NA

IL_67621.5*
1/AA/1243:1245,
1/AA/1277:1279
Isolated cWH basepair
geometric
IL_4WF9_045
NA

IL_42589.6*
1/AA/1246:1253,
1/AA/1272:1276
Kink-turn
homologous
IL_7RQB_047
NA

IL_29549.9*
1/AA/1257:1259,
1/AA/1266:1268
Intercalated cWW
geometric
IL_4WF9_047
NA

IL_04038.4*
1/AA/1300:1307,
1/AA/2038:2044
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA

IL_04346.5*
1/AA/1356:1360,
1/AA/1368:1370
Major groove minor groove platform with tHH
geometric
IL_4WF9_050
NA

IL_28060.3*
1/AA/1388:1392,
1/AA/1413:1417
UAA/GAN
geometric
IL_5J7L_292
NA

IL_34907.2*
1/AA/1394:1398,
1/AA/1407:1411
tSH-tHW-tHS
homologous
IL_7RQB_053
NA

IL_39521.5*
1/AA/1447:1461,
1/AA/1627:1636
NANA
1/AA/1461:1465,
1/AA/1624:1627
tSH-tHW
geometric
IL_7RQB_057
NA

IL_08757.3*
1/AA/1476:1480,
1/AA/1604:1608
NANA
1/AA/1481:1485,
1/AA/1598:1603
NANA
1/AA/1485:1511,
1/AA/1570:1598
NANA
1/AA/1511:1516,
1/AA/1564:1570

geometric
IL_4WF9_058
NA

IL_94518.4*
1/AA/1518:1522,
1/AA/1558:1562
NANA
1/AA/1523:1526,
1/AA/1549:1557
NANA
1/AA/1532:1534,
1/AA/1542:1543
NANA
1/AA/1695:1700,
1/AA/2031:2033

homologous
IL_7RQB_064
NA

IL_12566.2*
1/AA/1707:1709,
1/AA/2022:2024
Isolated tWW turn
homologous
IL_7RQB_065
NA

IL_54997.5*
1/AA/1710:1713,
1/AA/2020:2021
Major groove platform; stack outside cWW
homologous
IL_7RQB_066
NA

IL_80663.10*
1/AA/1713:1718,
1/AA/2017:2020
Intercalated tWH
geometric
IL_4WF9_065
NA

IL_01312.13*
1/AA/1730:1735,
1/AA/1740:1746
tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
NA

IL_66584.5*
1/AA/1756:1759,
1/AA/1770:1773
NANA
1/AA/1797:1798,
1/AA/2007:2009
Single bulged A
homologous
IL_7RQB_069
NA

IL_80007.16*
1/AA/1825:1831,
1/AA/1840:1848
Kink-turn related
homologous
IL_7RQB_070
NA

IL_17069.3*
1/AA/1864:1867,
1/AA/1929:1930
Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_7RQB_071
NA

IL_31836.1*
1/AA/1868:1869,
1/AA/1925:1928
Major groove outside cWW, minor groove, intercalation pocket
geometric
IL_5J7L_315
NA

IL_13730.12*
1/AA/1873:1876,
1/AA/1920:1921
NANA
1/AA/1878:1882,
1/AA/1914:1918
UAA/GAN with extra pair
homologous
IL_7RQB_074
NA

IL_34907.2*
1/AA/1883:1887,
1/AA/1909:1913
Triple sheared
homologous
IL_7RQB_075
NA

IL_56467.6*
1/AA/1961:1972,
1/AA/1988:1991

geometric
IL_7A0S_072
NA

IL_07097.1*
1/AA/2077:2079,
1/AA/2644:2645
Major groove platform
homologous
IL_7RQB_078
NA

IL_80663.10*
1/AA/2081:2083,
1/AA/2639:2642
NANA
1/AA/2094:2096,
1/AA/2469:2470
Single bulged U
homologous
IL_7RQB_080
NA

IL_83039.11*
1/AA/2097:2098,
1/AA/2465:2468
Minor groove platform
homologous
IL_7RQB_081
NA

IL_06437.11*
1/AA/2108:2110,
1/AA/2263:2266
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA

IL_38958.6*
1/AA/2123:2125,
1/AA/2218:2220

geometric
IL_4P3T_006
NA

IL_01312.13*
1/AA/2156:2169,
1/AA/2176:2186
NANA
1/AA/2229:2231,
1/AA/2247:2248
Single bulged G
geometric
IL_3NDB_004
NA

IL_59137.10*
1/AA/2324:2326,
1/AA/2344:2348
Isolated tHS basepair with bulges
geometric
IL_5TBW_099
NA

IL_38958.6*
1/AA/2377:2380,
1/AA/2391:2394
Double sheared
homologous
IL_7RQB_089
NA

IL_09705.7*
1/AA/2428:2430,
1/AA/2441:2442
Single bulged U
geometric
IL_2R8S_004
NA

IL_83039.11*
1/AA/2480:2481,
1/AA/2525:2527
Single stack bend
geometric
IL_4WF9_089
NA

IL_04038.4*
1/AA/2481:2482,
1/AA/2523:2525
Major groove platform
homologous
IL_7RQB_092
NA

IL_80663.10*
1/AA/2484:2486,
1/AA/2520:2521
Major groove platform
geometric
IL_4WF9_091
NA

IL_80663.10*
1/AA/2486:2488,
1/AA/2516:2520
Major groove minor groove platform with extra cWW
geometric
IL_7RQB_094
NA

IL_96042.4*
1/AA/2493:2497,
1/AA/2507:2511
Triple sheared
homologous
IL_7RQB_095
NA

IL_56467.6*
1/AA/2534:2535,
1/AA/2607:2609
Major groove platform
homologous
IL_7RQB_096
NA

IL_02060.4*
1/AA/2537:2539,
1/AA/2601:2605
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA

IL_01312.13*
1/AA/2539:2540,
1/AA/2598:2601

geometric
IL_5J7L_341
NA

IL_44093.1*
1/AA/2549:2550,
1/AA/2567:2570
Minor groove platform with intercalation
homologous
IL_7RQB_099
NA

IL_95601.1*
1/AA/2618:2619,
1/AA/2628:2630
Single bulged A
geometric
IL_4V9F_090
NA

IL_80007.16*
1/AA/2663:2667,
1/AA/2801:2809
tSH-tHS-tHW
homologous
IL_7RQB_102
NA

IL_34907.2*
1/AA/2679:2685,
1/AA/2690:2695
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7RQB_103
NA

IL_35110.5*
1/AA/2707:2711,
1/AA/2752:2754
C-loop
homologous
IL_7RQB_104
NA

IL_63596.4*
1/AA/2714:2718,
1/AA/2745:2749

homologous
IL_7RQB_105
NA

IL_08296.3*
1/AA/2722:2723,
1/AA/2738:2741
Multiple bulged bases
homologous
IL_7RQB_106
NA

IL_77034.1*
1/AA/2764:2769,
1/AA/2789:2794
UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA

IL_49767.4*
1/AA/2858:2859,
1/AA/2898:2900
Single bulged C
homologous
IL_7RQB_108
NA

IL_61258.10*
1/AA/2863:2865,
1/AA/2891:2894

geometric
IL_4WF9_107
NA

IL_02284.3*
1/AA/2867:2872,
1/AA/2885:2889

homologous
IL_7RQB_110
NA

IL_83162.3*
1/AB/15:16,
1/AB/63:65
NANA
1/AB/21:27,
1/AB/53:58
NANA
1/AB/28:29,
1/AB/49:52
NANA
1/AB/32:36,
1/AB/42:46
NANA
1/AB/69:77,
1/AB/94:102
NANA
1/AB/78:80,
1/AB/91:93
NANA
1/Aa/31:33,
1/Aa/560:561
NANA
1/Aa/45:46,
1/Aa/404:406
NANA
1/Aa/48:53,
1/Aa/367:369
NANA
1/Aa/54:57,
1/Aa/364:366
NANA
1/Aa/64:67,
1/Aa/102:103
NANA
1/Aa/68:71,
1/Aa/98:101
NANA
1/Aa/128:131,
1/Aa/239:240
NANA
1/Aa/132:136,
1/Aa/235:238
NANA
1/Aa/147:153,
1/Aa/168:175
NANA
1/Aa/187:190,
1/Aa/201:203
NANA
1/Aa/250:255,
1/Aa/285:292
NANA
1/Aa/256:261,
1/Aa/281:284
NANA
1/Aa/300:301,
1/Aa/312:316
NANA
1/Aa/375:377,
1/Aa/400:401
NANA
1/Aa/379:383,
1/Aa/397:398
NANA
1/Aa/383:384,
1/Aa/395:397
NANA
1/Aa/417:427,
1/Aa/432:441
NANA
1/Aa/454:458,
1/Aa/491:496
NANA
1/Aa/512:519,
1/Aa/548:549
NANA
1/Aa/523:529,
1/Aa/536:544
NANA
1/Aa/577:583,
1/Aa/889:890
NANA
1/Aa/588:592,
1/Aa/765:769
NANA
1/Aa/598:600,
1/Aa/655:657
NANA
1/Aa/602:604,
1/Aa/652:653
NANA
1/Aa/605:606,
1/Aa/648:651
NANA
1/Aa/612:620,
1/Aa/636:642
NANA
1/Aa/662:663,
1/Aa/759:762
NANA
1/Aa/665:666,
1/Aa/755:757
NANA
1/Aa/669:674,
1/Aa/748:752
NANA
1/Aa/681:686,
1/Aa/720:725
NANA
1/Aa/692:696,
1/Aa/707:714
NANA
1/Aa/782:787,
1/Aa/811:813
NANA
1/Aa/787:791,
1/Aa/807:811
NANA
1/Aa/896:903,
1/Aa/914:919
NANA
1/Aa/931:932,
1/Aa/1403:1405
NANA
1/Aa/934:936,
1/Aa/1400:1401
NANA
1/Aa/942:944,
1/Aa/1390:1394
NANA
1/Aa/962:963,
1/Aa/1236:1238
NANA
1/Aa/1002:1006,
1/Aa/1055:1056
NANA
1/Aa/1006:1010,
1/Aa/1050:1055
NANA
1/Aa/1059:1061,
1/Aa/1218:1219
NANA
1/Aa/1062:1067,
1/Aa/1214:1217
NANA
1/Aa/1068:1069,
1/Aa/1209:1213
NANA
1/Aa/1071:1072,
1/Aa/1205:1207
NANA
1/Aa/1072:1074,
1/Aa/1203:1205
NANA
1/Aa/1257:1263,
1/Aa/1294:1300
NANA
1/Aa/1265:1268,
1/Aa/1287:1292
NANA
1/Aa/1269:1274,
1/Aa/1281:1286
NANA
1/Aa/1313:1318,
1/Aa/1339:1344
NANA
1/Aa/1409:1411,
1/Aa/1512:1515
NANA
1/Aa/1411:1414,
1/Aa/1508:1512
NANA
1/Aa/1415:1417,
1/Aa/1505:1507
NANA
1/Aa/1417:1419,
1/Aa/1502:1505
NANA
1/Aa/1422:1424,
1/Aa/1497:1499
NANA
1/Aa/1426:1429,
1/Aa/1492:1495
NANA
1/Aa/1434:1437,
1/Aa/1484:1487
NANA
1/Aa/1440:1445,
1/Aa/1477:1481
NANA
1/Aa/1445:1447,
1/Aa/1475:1477
NANA
1/Aa/1450:1453,
1/Aa/1470:1472
NANA
1/Aa/1455:1458,
1/Aa/1466:1468
NANA
1/BA/24:30,
1/BA/555:561
Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA

IL_66414.5*
1/BA/36:37,
1/BA/488:490
Single bulged A
homologous
IL_7RQB_002
NA

IL_80007.16*
1/BA/42:44,
1/BA/480:483
Minor groove platform with extra cWW
geometric
IL_4WF9_003
NA

IL_87332.1*
1/BA/80:85,
1/BA/97:105
Kink-turn
geometric
IL_4LFB_031
NA

IL_37722.1*
1/BA/152:153,
1/BA/175:177
Major groove platform
geometric
IL_3NKB_002
NA

IL_80663.10*
1/BA/157:159,
1/BA/169:171
Isolated cWH basepair
geometric
IL_6F4H_001
NA

IL_42589.6*
1/BA/186:187,
1/BA/215:217
Single stack bend
homologous
IL_7RQB_005
NA

IL_04038.4*
1/BA/190:197,
1/BA/204:212
9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
NA

IL_61812.1*