#Varna 2DMotifNtsSize
1
  • IL_48256.2
IL_48256.2
  • Basepair signature: cWW-cWW
  • History status: Updated, 2 parents
  • Name: 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | 23S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 1-3 bulged nucleotides
5371
2
  • IL_92602.2
IL_92602.2
  • Basepair signature: cWW-cWW-cWW
  • History status: Updated, 2 parents
  • Name: Non-canonical cWW basepair
6321
3
  • IL_41766.10
IL_41766.10
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Updated, 2 parents
  • Name: Stacked cWW-cWH pairs | Tandem cWW pairs (Not AU or GC)
888
4
  • IL_39199.8
IL_39199.8
  • Basepair signature: cWW-tHS-cSH-cWW
  • History status: Updated, 1 parent
  • Name: Hoogsteen-edge Platform, Single bulged base
574
5
  • IL_67828.2
IL_67828.2
  • Basepair signature: cWW-R-cWW
  • History status: Updated, 1 parent
  • Name: 23S H91 IL | Single-Base Intercalation Site | Single, unpaired intercalated base, consensus A | 16S h32-h33-h34 3WJ
565
6
  • IL_44540.8
IL_44540.8
  • Basepair signature: cWW-cSH-tHS-cWW
  • History status: Updated, 2 parents
  • Name: One or more bulged nucleotides | Sugar-edge, 1-base platform, consensus tHS
562
7
  • IL_37976.1
IL_37976.1
  • Basepair signature: cWW-tSH-tHS-tHS-cWW
  • History status: > 2 parents
  • Name: Triple sheared (tSH-tHS-tHS) no inserted bases | Double sheared with wobble cWW. | Triple sheared (tSH-tHS-tHS) no inserted bases | SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif
1044
8
  • IL_85638.1
IL_85638.1
  • Basepair signature: cWW-cWH-cWW
  • History status: > 2 parents
  • Name: cWH basepair | Non-canonical cWW basepair | IL_53587.1 is a mixed group with either one cSW pair or an intercalated base
643
9
  • IL_13959.8
IL_13959.8
  • Basepair signature: cWW-tSH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Double Sheared (tSH-tHS)
839
10
  • IL_82822.2
IL_82822.2
  • Basepair signature: cWW-cWW
  • History status: Updated, 1 parent
  • Name: One or more bulged bases
535
11
  • IL_73276.9
IL_73276.9
  • Basepair signature: cWW-tWH-cSH-L-cWS-cWW
  • History status: Updated, 2 parents
  • Name: C-loop
731
12
  • IL_93424.8
IL_93424.8
  • Basepair signature: cWW-tWH-L-tHS-cWW
  • History status: Updated, 1 parent
  • Name: tSH-inserted-tHW
931
13
  • IL_65553.12
IL_65553.12
  • Basepair signature: cWW-cSS-tSS-L-tSH-tSS-tHS-tHW-cWW-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Kink-turn
1329
14
  • IL_55938.8
IL_55938.8
  • Basepair signature: cWW-cSH-cWW-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 89 (H89) IL2. cSH Platform.
727
15
  • IL_85647.7
IL_85647.7
  • Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Sarcin-ricin parent motif with 15 Nts
1525
16
  • IL_92027.7
IL_92027.7
  • Basepair signature: cWW-cSH-cWS-cWW
  • History status: Updated, 1 parent
  • Name: 16S h21 S8 binding site
625
17
  • IL_34098.2
IL_34098.2
  • Basepair signature: cWW-cWW-L-cWW
  • History status: Updated, 2 parents
  • Name: cWW with bulged base | tHS and base triple with flanking pair
721
18
  • IL_77895.1
IL_77895.1
  • Basepair signature: cWW-tSH-tHW-tHS-cWW
  • History status: > 2 parents
  • Name: Triple sheared (tSH-tHS-tHS) no inserted bases | Double sheared with wobble cWW. | SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif
1020
19
  • IL_37104.7
IL_37104.7
  • Basepair signature: cWW-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Single sheared with bulged bases
719
20
  • IL_53587.2
IL_53587.2
  • Basepair signature: cWW-cSW-cWW
  • History status: Updated, 2 parents
  • Name: Base triple, intercalated pair, and bulged bases making long-range interactions. | IL_53587.1 is a mixed group with either one cSW pair or an intercalated base
618
21
  • IL_49493.8
IL_49493.8
  • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Sarcin-ricin Parent Motif - bacterial LSU H95 IL
1318
22
  • IL_21137.1
IL_21137.1
  • Basepair signature: cWW-cWS-cWW
  • History status: > 2 parents
  • Name: Sugar-edge, 1-base platform, consensus tHS | cHS-cWS | 16S h32-h33-h34 3WJ
518
23
  • IL_66381.1
IL_66381.1
  • Basepair signature: cWW-cWW
  • History status: > 2 parents
  • Name: One or more bulged nucleotides | 1-3 bulged nucleotides | 23S H41 IL and 16S h18 IL : Has large bulge on one side
517
24
  • IL_68859.1
IL_68859.1
  • Basepair signature: cWW-tSH-cWW-cWS-cWW-cWW
  • History status: New id, 2 parents
  • Name: Triple sheared (tSH-tHS-tHS) no inserted bases | Double sheared with wobble cWW. | Double sheared with wobble cWW.
1016
25
  • IL_37964.2
IL_37964.2
  • Basepair signature: cWW-tHS-R-cWW
  • History status: Updated, 1 parent
  • Name: Recurrent Sub-motif found in junctions
616
26
  • IL_31555.8
IL_31555.8
  • Basepair signature: cWW-R-tSH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Tandem sheared with inserted, unpaired purine
915
27
  • IL_67038.1
IL_67038.1
  • Basepair signature: cWW-tHS-cWW
  • History status: Exact match
  • Name: 23S H91 IL | Single-Base Intercalation Site
615
28
  • IL_19986.2
IL_19986.2
  • Basepair signature: cWW-cWW-cSW-cWW-cSH-cWW
  • History status: Updated, 1 parent
  • Name: Pair and triple
915
29
  • IL_58261.2
IL_58261.2
  • Basepair signature: cWW-cWW-tSH-tHS-tHS-cWW
  • History status: Updated, 1 parent
  • Name: SRP Loop E-like motif | Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif
1213
30
  • IL_93635.1
IL_93635.1
  • Basepair signature: cWW-cWW-cWW
  • History status: New id, 2 parents
  • Name: Non-canonical cWW
613
31
  • IL_18271.1
IL_18271.1
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
  • Name: Single, unpaired intercalated base, consensus A | 23S H91 IL
512
32
  • IL_68638.1
IL_68638.1
  • Basepair signature: cWW-cWW
  • History status: > 2 parents
  • Name: One or more bulged nucleotides
512
33
  • IL_75508.1
IL_75508.1
  • Basepair signature: cWW-tWW-cWW
  • History status: > 2 parents
  • Name: LSU Helix 61 IL2 | IL_53587.1 is a mixed group with either one cSW pair or an intercalated base
612
34
  • IL_92114.5
IL_92114.5
  • Basepair signature: cWW-cSH-tHW-L-cWW
  • History status: Updated, 1 parent
  • Name: GAAA loop receptor "platform" motif
911
35
  • IL_02809.5
IL_02809.5
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Updated, 1 parent
  • Name: REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
810
36
  • IL_11015.3
IL_11015.3
  • Basepair signature: cWW-cSH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: tHS and base triple with flanking pair
710
37
  • IL_92122.2
IL_92122.2
  • Basepair signature: cWW-cWW-tWH-L-tHS-cWW
  • History status: Updated, 1 parent
1110
38
  • IL_70237.7
IL_70237.7
  • Basepair signature: cWW-L-L-cWS-tSW-R-R-cWW
  • History status: Updated, 1 parent
109
39
  • IL_53635.6
IL_53635.6
  • Basepair signature: cWW-R-tHW-tHW-tWW-cWW
  • History status: Exact match
  • Name: LSU Helix 32 (H32) IL
139
40
  • IL_86933.2
IL_86933.2
  • Basepair signature: cWW-cWW-tSH-tHS-tHS-L-R-cWW
  • History status: Updated, 1 parent
  • Name: Quadruple sheared (tSH-tHS-tHS-tHS). LSU Helix 2 (H2).
149
41
  • IL_13069.7
IL_13069.7
  • Basepair signature: cWW-cWW
  • History status: Updated, 1 parent
  • Name: LSU 3WJ H32-H33-H35A
89
42
  • IL_32902.2
IL_32902.2
  • Basepair signature: cWW-cHW-cWW-cWW
  • History status: Updated, 1 parent
  • Name: Stacked cWW-cWH pairs
89
43
  • IL_72158.7
IL_72158.7
  • Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 62 (H62) IL
139
44
  • IL_98284.1
IL_98284.1
  • Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW
  • History status: New id, 2 parents
  • Name: SRP Loop E-like motif | SSU Helix (23) h23 IL1 | SRP Loop E-like motif | Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif
129
45
  • IL_72032.1
IL_72032.1
  • Basepair signature: cWW-L-R-R-R-L-cWW
  • History status: New id, 2 parents
  • Name: LSU Helix 96 (H96) IL2
98
46
  • IL_74856.4
IL_74856.4
  • Basepair signature: cWW-cWW-cSH-R-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 89 (H89) IL2
88
47
  • IL_39212.2
IL_39212.2
  • Basepair signature: cWW-L-L-L-tHS-cWW
  • History status: Updated, 1 parent
98
48
  • IL_12849.2
IL_12849.2
  • Basepair signature: cWW-cWW-tSH-cWW
  • History status: Updated, 1 parent
78
49
  • IL_89033.2
IL_89033.2
  • Basepair signature: cWW-L-L-L-cSH-L-cWW
  • History status: Updated, 1 parent
  • Name: 23S H41 IL and 16S h18 IL : Has large bulge on one side
108
50
  • IL_93568.6
IL_93568.6
  • Basepair signature: cWW-tSH-tHS-tHS-L-R-cWW
  • History status: Updated, 1 parent
  • Name: Triple Sheared (tSH-tHS-tHS) with wobble cWW.
127
51
  • IL_77263.3
IL_77263.3
  • Basepair signature: cWW-tSS-L-tSH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Kink-turn from U4
117
52
  • IL_31066.6
IL_31066.6
  • Basepair signature: cWW-R-cWW
  • History status: Updated, 1 parent
  • Name: SSU Helix 44 (h44) extension
77
53
  • IL_95652.6
IL_95652.6
  • Basepair signature: cWW-R-tSH-tHW-cSH-tHH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: SSU Helix 27 (h27) IL Sarcin-Ricin motif
147
54
  • IL_96532.1
IL_96532.1
  • Basepair signature: cWW-cWW-cWS-cWW
  • History status: > 2 parents
  • Name: cWS plus stacked base
87
55
  • IL_08926.6
IL_08926.6
  • Basepair signature: cWW-cHH-cWW
  • History status: Updated, 2 parents
  • Name: 23S H91 IL
57
56
  • IL_64847.2
IL_64847.2
  • Basepair signature: cWW-tWH-tSH-tHS-cWW
  • History status: Exact match
  • Name: Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
107
57
  • IL_73000.4
IL_73000.4
  • Basepair signature: cWW-cSW-cSH-cWW
  • History status: Updated, 1 parent
  • Name: cHS-cWS
67
58
  • IL_82188.5
IL_82188.5
  • Basepair signature: cWW-tSH-L-R-R-R-R-L-L-L-cWW
  • History status: Updated, 1 parent
  • Name: LSU H68 IL from H.m.
147
59
  • IL_15123.3
IL_15123.3
  • Basepair signature: cWW-L-R-cHW-L-L-L-L-L-cWW
  • History status: Exact match
  • Name: Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th.
166
60
  • IL_02359.6
IL_02359.6
  • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
  • History status: Exact match
166
61
  • IL_22529.1
IL_22529.1
  • Basepair signature: cWW-L-R-cWW
  • History status: > 2 parents
  • Name: cWW AG or UU | cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | Stacked bases not quite making a basepair. | IL_53587.1 is a mixed group with either one cSW pair or an intercalated base
66
62
  • IL_26321.2
IL_26321.2
  • Basepair signature: cWW-tSH-R-tHS-tHS-bif-cWW
  • History status: Updated, 2 parents
  • Name: LSU H58 IL2 H.m. | SRP Loop E-like motif | Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif
126
63
  • IL_98016.2
IL_98016.2
  • Basepair signature: cWW-R-cWW
  • History status: Updated, 1 parent
  • Name: One or more bulged nucleotides
56
64
  • IL_85010.2
IL_85010.2
  • Basepair signature: cWW-L-cSH-cWW
  • History status: Updated, 1 parent
  • Name: 23S H91 IL | Single-Base Intercalation Site
66
65
  • IL_32261.4
IL_32261.4
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 89 (H89) IL2
96
66
  • IL_28572.5
IL_28572.5
  • Basepair signature: cWW-tWH-cSW-L-R-R-L-tHS-cWW
  • History status: Updated, 1 parent
  • Name: 16S h18 kink-turn like motif
166
67
  • IL_99561.1
IL_99561.1
  • Basepair signature: cWW-tWH-tHS-cWW
  • History status: > 2 parents
  • Name: Double Sheared (tSH-tHS) | Stacked cWW-cWH pairs | tSH-tHW-bulge
86
68
  • IL_41366.1
IL_41366.1
  • Basepair signature: cWW-cWW-L-R-L-cWW-cWW
  • History status: New id, 1 parent
116
69
  • IL_34363.4
IL_34363.4
  • Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-R-bif-cWW
  • History status: Updated, 1 parent
  • Name: Kink-turn from 23S H42
146
70
  • IL_25230.5
IL_25230.5
  • Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW
  • History status: Exact match
  • Name: Bacterial 5S rRNA Loop E
186
71
  • IL_74753.1
IL_74753.1
  • Basepair signature: cWW-cWW-R-cWW
  • History status: New id, 2 parents
  • Name: Non-canonical cWW with inserted stacked base.
76
72
  • IL_51439.1
IL_51439.1
  • Basepair signature: cWW-tSH-L-L-tHH-cWW
  • History status: Exact match
116
73
  • IL_12211.4
IL_12211.4
  • Basepair signature: cWW-L-R-R-R-L-L-L-cWW-cWW
  • History status: Updated, 1 parent
135
74
  • IL_98421.7
IL_98421.7
  • Basepair signature: cWW-tHH-L-L-cWW
  • History status: Exact match
  • Name: SSU Helix 12 (h12) IL | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1
75
75
  • IL_07837.1
IL_07837.1
  • Basepair signature: cWW-cSW-R-cWW
  • History status: > 2 parents
  • Name: Non-canonical cWW with inserted stacked base. | cWS plus stacked base | Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | tSH-inserted
75
76
  • IL_15702.2
IL_15702.2
  • Basepair signature: cWW-R-tSS-tWW-tWW-cWW
  • History status: Updated, 1 parent
145
77
  • IL_73281.2
IL_73281.2
  • Basepair signature: cWW-tSH-tHW-L-cSH-R-L-cWW-cWW
  • History status: Updated, 1 parent
  • Name: Sarcin-like with an intercalated basepair
145
78
  • IL_99840.1
IL_99840.1
  • Basepair signature: cWW-L-R-tSH-L-R-cWW
  • History status: > 2 parents
  • Name: Triple sheared (tSH-tHS-tHS) no inserted bases | Double sheared with wobble cWW. | Triple sheared (tSH-tHS-tHS) no inserted bases
105
79
  • IL_37053.4
IL_37053.4
  • Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW
  • History status: Updated, 1 parent
  • Name: Kink-turn from 23S H58
135
80
  • IL_55114.3
IL_55114.3
  • Basepair signature: cWW-L-R-tHS-cWW
  • History status: Exact match
  • Name: Double S-turn motif | tHS tHH bulge with S-turn | Double S-turn motif
95
81
  • IL_60760.2
IL_60760.2
  • Basepair signature: cWW-cWW-cWW
  • History status: Updated, 1 parent
65
82
  • IL_99363.2
IL_99363.2
  • Basepair signature: cWW-L-tSS-cWW
  • History status: Updated, 1 parent
95
83
  • IL_39980.2
IL_39980.2
  • Basepair signature: cWW-L-cSH-cWW
  • History status: Exact match
85
84
  • IL_70108.1
IL_70108.1
  • Basepair signature: cWW-L-R-R-L-cWW
  • History status: > 2 parents
  • Name: REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
85
85
  • IL_04397.2
IL_04397.2
  • Basepair signature: cWW-tWH-L-tHW-cSH-cWW
  • History status: Exact match
125
86
  • IL_84284.1
IL_84284.1
  • Basepair signature: cWW-cSH-tWH-cSH-cWW-cWW
  • History status: New id, 2 parents
95
87
  • IL_86694.2
IL_86694.2
  • Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW
  • History status: Updated, 2 parents
  • Name: SSU Helix 8 (h8) IL E.c. and Yeast | LSU H68 IL from H.m.
155
88
  • IL_71229.2
IL_71229.2
  • Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW
  • History status: Exact match
165
89
  • IL_04238.1
IL_04238.1
  • Basepair signature: cWW-cWH-cWW
  • History status: New id, 2 parents
  • Name: cWH basepair | Stacked bases not quite making a basepair.
65
90
  • IL_94519.2
IL_94519.2
  • Basepair signature: cWW-tWH-tHH-tHS-cWW
  • History status: Exact match
114
91
  • IL_32508.1
IL_32508.1
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
  • Name: 23S H91 IL
64
92
  • IL_77382.1
IL_77382.1
  • Basepair signature: cWW-L-R-cWW-cWW-cWW-cWW
  • History status: New id, 1 parent
  • Name: SRP Loop E-like motif | SSU Helix (23) h23 IL1
124
93
  • IL_52184.1
IL_52184.1
  • Basepair signature: cWW-L-R-L-L-L-cWW
  • History status: New id, 2 parents
  • Name: Base triple, intercalated pair, and bulged bases making long-range interactions.
94
94
  • IL_83339.1
IL_83339.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
74
95
  • IL_94403.7
IL_94403.7
  • Basepair signature: cWW-L-L-tWH-L-L-L-cWW
  • History status: Updated, 2 parents
  • Name: LSU H77
124
96
  • IL_39526.4
IL_39526.4
  • Basepair signature: cWW-L-L-L-L-L-cWW
  • History status: Exact match
94
97
  • IL_77076.3
IL_77076.3
  • Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-cWW
  • History status: Exact match
184
98
  • IL_37197.4
IL_37197.4
  • Basepair signature: cWW-L-L-L-tHS-cWW-cWW
  • History status: Updated, 1 parent
114
99
  • IL_77152.1
IL_77152.1
  • Basepair signature: cWW-L-R-L-cWW-cWW
  • History status: > 2 parents
94
100
  • IL_92942.1
IL_92942.1
  • Basepair signature: cWW-L-R-R-cWW
  • History status: New id, 1 parent
  • Name: cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
74
101
  • IL_43727.1
IL_43727.1
  • Basepair signature: cWW-tSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: tSH-inserted-tHS | tHS tHH bulge with S-turn | tSH-inserted-tHS
94
102
  • IL_40053.2
IL_40053.2
  • Basepair signature: cWW-tWW-L-tWW-tWH-cWW
  • History status: Updated, 1 parent
144
103
  • IL_16166.5
IL_16166.5
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
  • Name: 23S H91 IL
54
104
  • IL_10822.1
IL_10822.1
  • Basepair signature: cWW-L-cWS-cWW
  • History status: New id, 1 parent
  • Name: cWS making long-range triple
84
105
  • IL_04466.1
IL_04466.1
  • Basepair signature: cWW-R-R-cWW
  • History status: New id, 2 parents
64
106
  • IL_06584.1
IL_06584.1
  • Basepair signature: cWW-cWW-L-R-R-tHW-bif-cWW
  • History status: New id, 2 parents
134
107
  • IL_69536.5
IL_69536.5
  • Basepair signature: cWW-tSH-R-R-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 96 (H96) IL2
84
108
  • IL_70089.2
IL_70089.2
  • Basepair signature: cWW-L-R-R-R-L-cWW
  • History status: Updated, 1 parent
104
109
  • IL_48918.3
IL_48918.3
  • Basepair signature: cWW-tSH-tSH-tHS-tSS-R-cWW
  • History status: Exact match
  • Name: Kink-turn variant
134
110
  • IL_82563.1
IL_82563.1
  • Basepair signature: cWW-R-tWH-R-R-R-cWW
  • History status: Exact match
  • Name: Thi-box riboswitch T-loop
103
111
  • IL_22025.1
IL_22025.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
103
112
  • IL_09530.4
IL_09530.4
  • Basepair signature: cWW-cWH-tWS-cWW
  • History status: Updated, 1 parent
  • Name: Double S-turn motif
103
113
  • IL_78744.2
IL_78744.2
  • Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW
  • History status: Updated, 2 parents
  • Name: Quadruple Sheared (tSH-tSH-tHS-tHS)
123
114
  • IL_62499.10
IL_62499.10
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
  • Name: 23S H91 IL
63
115
  • IL_84401.1
IL_84401.1
  • Basepair signature: cWW-cSW-cSH-cWW-cWW
  • History status: > 2 parents
  • Name: cWW with bulged base
73
116
  • IL_45592.2
IL_45592.2
  • Basepair signature: cWW-L-R-R-cWW
  • History status: Exact match
  • Name: 23S H91 IL
103
117
  • IL_43946.1
IL_43946.1
  • Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW
  • History status: Exact match
123
118
  • IL_87899.2
IL_87899.2
  • Basepair signature: cWW-R-cSH-tWH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif
103
119
  • IL_87548.2
IL_87548.2
  • Basepair signature: cWW-L-R-cSH-tWH-tHS-cWW
  • History status: Updated, 1 parent
113
120
  • IL_68139.1
IL_68139.1
  • Basepair signature: cWW-cWW
  • History status: New id, 2 parents
  • Name: One or more bulged nucleotides
53
121
  • IL_21639.2
IL_21639.2
  • Basepair signature: cWW-L-tWH-R-R-R-cWW
  • History status: Exact match
93
122
  • IL_40892.2
IL_40892.2
  • Basepair signature: cWW-cWS-L-L-cWW
  • History status: Exact match
113
123
  • IL_34628.2
IL_34628.2
  • Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn
133
124
  • IL_98073.2
IL_98073.2
  • Basepair signature: cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11.
173
125
  • IL_96898.1
IL_96898.1
  • Basepair signature: cWW-cSW-tWH-cSH-L-cWS-R-cWW
  • History status: New id, 1 parent
103
126
  • IL_91102.2
IL_91102.2
  • Basepair signature: cWW-cWW-L-R-L-cWW
  • History status: Updated, 1 parent
93
127
  • IL_74876.4
IL_74876.4
  • Basepair signature: cWW-tWH-L-R-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
103
128
  • IL_19268.1
IL_19268.1
  • Basepair signature: cWW-L-R-cWW
  • History status: Exact match
73
129
  • IL_92205.2
IL_92205.2
  • Basepair signature: cWW-cWW-cWW
  • History status: Updated, 2 parents
  • Name: cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
63
130
  • IL_90735.3
IL_90735.3
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-L-L-L-L-L-cWW
  • History status: Updated, 1 parent
173
131
  • IL_53504.1
IL_53504.1
  • Basepair signature: cWW-L-R-R-R-R-R-L-L-L-L-cWW-cWW
  • History status: New id, no parents
153
132
  • IL_75951.1
IL_75951.1
  • Basepair signature: cWW-L-cWW-cWW
  • History status: > 2 parents
  • Name: Non-canonical cWW with inserted stacked base. | cWS plus stacked base
73
133
  • IL_16330.1
IL_16330.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
282
134
  • IL_55583.1
IL_55583.1
  • Basepair signature: cWW-L-cWW
  • History status: New id, 2 parents
  • Name: 23S H91 IL | Single-Base Intercalation Site | 16S h32-h33-h34 3WJ
62
135
  • IL_35558.1
IL_35558.1
  • Basepair signature: cWW-tSH-L-R-R-L-L-cWW
  • History status: Exact match
112
136
  • IL_52940.1
IL_52940.1
  • Basepair signature: cWW-L-R-R-R-R-L-L-L-tWW-cWW
  • History status: Exact match
142
137
  • IL_22611.1
IL_22611.1
  • Basepair signature: cWW-R-R-cWW-cWW
  • History status: New id, 1 parent
  • Name: LSU Helix 89 (H89) IL2 | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1
82
138
  • IL_43363.1
IL_43363.1
  • Basepair signature: cWW-L-R-R-L-L-L-cWW
  • History status: Exact match
122
139
  • IL_41740.1
IL_41740.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: New id, no parents
72
140
  • IL_27536.1
IL_27536.1
  • Basepair signature: cWW-tSH-L-cWW
  • History status: New id, 2 parents
  • Name: Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | tSH-inserted
82
141
  • IL_03362.1
IL_03362.1
  • Basepair signature: cWW-tSS-tWW-L-tSH-R-R-cWW
  • History status: Exact match
132
142
  • IL_58695.1
IL_58695.1
  • Basepair signature: cWW-tSH-L-R-R-R-L-cWW-L-R-cWW
  • History status: New id, 1 parent
152
143
  • IL_37400.1
IL_37400.1
  • Basepair signature: cWW-L-R-R-L-tWH-tHS-tSS-tSS-R-cWW
  • History status: New id, 1 parent
  • Name: SSU Helix 23 (h23) Kink-turn T. thermophilus
152
144
  • IL_57674.1
IL_57674.1
  • Basepair signature: cWW-R-R-cWW
  • History status: New id, 1 parent
62
145
  • IL_93090.1
IL_93090.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: New id, 2 parents
82
146
  • IL_28003.2
IL_28003.2
  • Basepair signature: cWW-cSH-tHW-cWW
  • History status: Exact match
92
147
  • IL_51413.1
IL_51413.1
  • Basepair signature: cWW-L-R-R-L-tHW-cSH-tHH-L-R-cWW-cWW
  • History status: New id, 1 parent
  • Name: Sarcin-ricin motif from Eukaryal LSU Helix 11
172
148
  • IL_32815.1
IL_32815.1
  • Basepair signature: cWW-L-R-R-L-cWW
  • History status: New id, 1 parent
  • Name: REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
82
149
  • IL_06692.1
IL_06692.1
  • Basepair signature: cWW-tSS-L-cSS-R-L-cWW
  • History status: Exact match
132
150
  • IL_96446.1
IL_96446.1
  • Basepair signature: cWW-R-R-tWH-L-R-cWW
  • History status: Exact match
112
151
  • IL_80494.5
IL_80494.5
  • Basepair signature: cWW-tWH-L-R-tHS-bif-cWW
  • History status: Updated, 1 parent
  • Name: LSU H58 IL2 H.m.
132
152
  • IL_21495.1
IL_21495.1
  • Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW
  • History status: Exact match
152
153
  • IL_77809.1
IL_77809.1
  • Basepair signature: cWW-tHW-cSW-cSH-cWW
  • History status: New id, 1 parent
  • Name: C-loop
72
154
  • IL_31707.1
IL_31707.1
  • Basepair signature: cWW-L-L-L-cWW-L-bif-cWW
  • History status: Exact match
  • Name: Vitamin B12 aptamer
112
155
  • IL_06675.1
IL_06675.1
  • Basepair signature: cWW-tSH-L-R-R-R-cWW
  • History status: Exact match
  • Name: Triple Sheared with unpaired, inserted A
102
156
  • IL_23414.1
IL_23414.1
  • Basepair signature: cWW-L-R-R-R-cSH-R-bif-tWH-R-R-R-R-R-L-cWW
  • History status: Exact match
212
157
  • IL_50521.1
IL_50521.1
  • Basepair signature: cWW-tSH-cWH-tWH-tSS-tHW-L-cWW
  • History status: Exact match
152
158
  • IL_09882.1
IL_09882.1
  • Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW
  • History status: Exact match
122
159
  • IL_59563.3
IL_59563.3
  • Basepair signature: cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Sarcin-ricin motif with syn G
152
160
  • IL_28058.1
IL_28058.1
  • Basepair signature: cWW-tSS-L-L-cSS-tWH-tSW-cWS-cSS-tWS-cSH-cWH-cHW-cSH-R-R-cWW
  • History status: Exact match
252
161
  • IL_37481.1
IL_37481.1
  • Basepair signature: cWW-L-R-R-cSH-tWH-tHS-cWW
  • History status: New id, 1 parent
122
162
  • IL_87433.1
IL_87433.1
  • Basepair signature: cWW-L-R-R-R-L-cWW
  • History status: New id, 2 parents
102
163
  • IL_79398.2
IL_79398.2
  • Basepair signature: cWW-L-R-cWW
  • History status: Updated, 1 parent
  • Name: cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
62
164
  • IL_37914.3
IL_37914.3
  • Basepair signature: cWW-tWH-L-cWS-cWW-cWW
  • History status: Updated, 1 parent
112
165
  • IL_35279.1
IL_35279.1
  • Basepair signature: cWW-L-R-R-R-R-L-L-tHH-cSH-tWH-tHS-cWW
  • History status: New id, no parents
182
166
  • IL_68034.1
IL_68034.1
  • Basepair signature: cWW-R-R-cWW
  • History status: Exact match
72
167
  • IL_91942.1
IL_91942.1
  • Basepair signature: cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW
  • History status: Exact match
162
168
  • IL_22165.1
IL_22165.1
  • Basepair signature: cWW-L-R-R-R-R-R-L-L-L-cWW
  • History status: New id, 1 parent
132
169
  • IL_40041.1
IL_40041.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
62
170
  • IL_94744.1
IL_94744.1
  • Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with extra cWW GA pair
172
171
  • IL_24955.2
IL_24955.2
  • Basepair signature: cWW-L-R-cWW
  • History status: Updated, 1 parent
62
172
  • IL_74462.1
IL_74462.1
  • Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW
  • History status: Exact match
232
173
  • IL_67024.1
IL_67024.1
  • Basepair signature: cWW-R-R-R-tSW-L-cWW
  • History status: Exact match
112
174
  • IL_81791.1
IL_81791.1
  • Basepair signature: cWW-L-R-R-R-R-R-L-L-L-L-cWW
  • History status: New id, 1 parent
162
175
  • IL_39175.1
IL_39175.1
  • Basepair signature: cWW-R-R-R-R-R-cWW
  • History status: Exact match
92
176
  • IL_98172.1
IL_98172.1
  • Basepair signature: cWW-L-R-R-L-L-cSS-L-cWW-cWW
  • History status: Exact match
172
177
  • IL_70401.1
IL_70401.1
  • Basepair signature: cWW-L-L-tWW-L-L-L-cWW
  • History status: Exact match
112
178
  • IL_79341.1
IL_79341.1
  • Basepair signature: cWW-cWW-L-cWW
  • History status: New id, 1 parent
  • Name: Non-canonical cWW basepair
72
179
  • IL_21062.1
IL_21062.1
  • Basepair signature: cWW-cWW-L-R-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with cWW UU instead of tSH basepair.
132
180
  • IL_28028.1
IL_28028.1
  • Basepair signature: cWW-L-R-R-L-cWW-cWW
  • History status: Exact match
102
181
  • IL_39439.1
IL_39439.1
  • Basepair signature: cWW-L-R-R-R-L-L-cWW
  • History status: Exact match
102
182
  • IL_86090.1
IL_86090.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: New id, 1 parent
92
183
  • IL_34637.1
IL_34637.1
  • Basepair signature: cWW-cHW-tHS-cWW
  • History status: New id, 1 parent
82
184
  • IL_44092.1
IL_44092.1
  • Basepair signature: cWW-L-L-L-cWW
  • History status: Exact match
82
185
  • IL_33842.1
IL_33842.1
  • Basepair signature: cWW-cSH-L-cWS-cWW
  • History status: Exact match
92
186
  • IL_65137.1
IL_65137.1
  • Basepair signature: cWW-L-cSS-tWH-tHW-L-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn like motif in Group I Intron
132
187
  • IL_19589.1
IL_19589.1
  • Basepair signature: cWW-cSW-tSH-tWH-tHW-tHS-cWW-cWW
  • History status: New id, 1 parent
142
188
  • IL_46435.1
IL_46435.1
  • Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW
  • History status: Exact match
132
189
  • IL_62504.2
IL_62504.2
  • Basepair signature: cWW-tSH-tSH-L-R-L-cWW
  • History status: Updated, 1 parent
  • Name: Triple Sheared with unpaired, inserted A
112
190
  • IL_03783.1
IL_03783.1
  • Basepair signature: cWW-L-R-R-R-R-L-L-cWW
  • History status: New id, 1 parent
112
191
  • IL_92630.1
IL_92630.1
  • Basepair signature: cWW-L-R-tHS-cWW
  • History status: New id, 2 parents
  • Name: tHS tHH bulge with S-turn
92
192
  • IL_76095.3
IL_76095.3
  • Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-cWW-cWW
  • History status: Exact match
  • Name: Motif from Hairpin Ribozyme
202
193
  • IL_70320.1
IL_70320.1
  • Basepair signature: cWW-tWH-R-cSH-cWW-cWW
  • History status: New id, 1 parent
  • Name: 16S h40 3WJ T.th.
102
194
  • IL_63917.2
IL_63917.2
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Updated, 1 parent
82
195
  • IL_20094.1
IL_20094.1
  • Basepair signature: cWW-tSS-L-R-R-tWH-R-R-R-R-R-L-cWW
  • History status: New id, 1 parent
182
196
  • IL_44977.1
IL_44977.1
  • Basepair signature: cWW-cWW-L-R-R-L-cWW-cWW
  • History status: Exact match
  • Name: LSU H58 IL2 H.m. | SSU Helix (23) h23 IL1
122
197
  • IL_28666.1
IL_28666.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-L-L-cWW
  • History status: New id, no parents
142
198
  • IL_80714.1
IL_80714.1
  • Basepair signature: cWW-tSH-L-R-R-L-L-L-cWW
  • History status: Exact match
121
199
  • IL_73656.1
IL_73656.1
  • Basepair signature: cWW-L-R-R-R-L-L-L-L-cWW-cWW
  • History status: Exact match
151
200
  • IL_31160.1
IL_31160.1
  • Basepair signature: cWW-L-L-L-L-L-cWW
  • History status: Exact match
111
201
  • IL_83427.1
IL_83427.1
  • Basepair signature: cWW-L-L-L-cWW-cWW
  • History status: New id, no parents
81
202
  • IL_57977.1
IL_57977.1
  • Basepair signature: cWW-tSH-L-R-L-tHS-cWW
  • History status: Exact match
111
203
  • IL_02897.1
IL_02897.1
  • Basepair signature: cWW-L-R-cWW-L-L-tSW-L-cWW
  • History status: Exact match
  • Name: Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th.
161
204
  • IL_12507.1
IL_12507.1
  • Basepair signature: cWW-cSS-cSS-R-R-L-L-L-cWW
  • History status: Exact match
131
205
  • IL_75328.1
IL_75328.1
  • Basepair signature: cWW-L-R-R-R-L-L-cSS-tSS-cWW
  • History status: Exact match
141
206
  • IL_34816.1
IL_34816.1
  • Basepair signature: cWW-L-R-R-cWS-cSW-R-cWW
  • History status: Exact match
131
207
  • IL_22909.1
IL_22909.1
  • Basepair signature: cWW-L-cSH-R-R-R-cWW
  • History status: Exact match
91
208
  • IL_11778.1
IL_11778.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
81
209
  • IL_64749.1
IL_64749.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW
  • History status: New id, 1 parent
171
210
  • IL_91089.1
IL_91089.1
  • Basepair signature: cWW-L-L-L-L-cWW
  • History status: Exact match
81
211
  • IL_94973.1
IL_94973.1
  • Basepair signature: cWW-L-R-L-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-Ricin from Group II Intron with inserted base and poor modeling:
141
212
  • IL_47805.1
IL_47805.1
  • Basepair signature: cWW-tSH-cSH-tHW-L-cWW
  • History status: New id, no parents
111
213
  • IL_48045.1
IL_48045.1
  • Basepair signature: cWW-tSS-L-R-cSS-R-L-tWH-L-L-cWW
  • History status: New id, no parents
151
214
  • IL_02835.1
IL_02835.1
  • Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
131
215
  • IL_81587.1
IL_81587.1
  • Basepair signature: cWW-cWW-L-R-R-L-tSH-tHS-tSS-tSS-R-cWW
  • History status: Exact match
171
216
  • IL_26971.1
IL_26971.1
  • Basepair signature: cWW-tSH-L-R-R-R-L-cWW
  • History status: Exact match
111
217
  • IL_66408.1
IL_66408.1
  • Basepair signature: cWW-R-tWH-tWS-cWW
  • History status: New id, 1 parent
111
218
  • IL_22953.1
IL_22953.1
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
  • Name: Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
61
219
  • IL_75176.1
IL_75176.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-R-L-L-cWW
  • History status: New id, no parents
161
220
  • IL_58203.1
IL_58203.1
  • Basepair signature: cWW-R-cWH-R-R-R-cWW
  • History status: New id, 1 parent
  • Name: cWH basepair
111
221
  • IL_52958.1
IL_52958.1
  • Basepair signature: cWW-L-R-R-L-L-cWW
  • History status: Exact match
101
222
  • IL_99937.1
IL_99937.1
  • Basepair signature: cWW-R-R-tWS-L-R-cWW
  • History status: Exact match
111
223
  • IL_82601.1
IL_82601.1
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: Tandem cWW water-inserted CU pairs
81
224
  • IL_89463.1
IL_89463.1
  • Basepair signature: cWW-tSS-cSS-L-R-R-L-L-L-L-cWW
  • History status: Exact match
131
225
  • IL_92733.1
IL_92733.1
  • Basepair signature: cWW-L-R-R-R-R-L-L-cSS-L-cWH-cWS-cWW
  • History status: New id, no parents
231
226
  • IL_26868.1
IL_26868.1
  • Basepair signature: cWW-tSH-tHW-tWW-cWW
  • History status: Exact match
111
227
  • IL_06808.1
IL_06808.1
  • Basepair signature: cWW-tSH-tHS-cWW
  • History status: Exact match
  • Name: Double sheared (tSH-tSH) one bulged base.
91
228
  • IL_87776.1
IL_87776.1
  • Basepair signature: cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW
  • History status: New id, 1 parent
181
229
  • IL_37970.1
IL_37970.1
  • Basepair signature: cWW-R-tWH-tHS-cWW
  • History status: Exact match
  • Name: tHS tHH bulge with S-turn | tSH-inserted-tHS
101
230
  • IL_57285.1
IL_57285.1
  • Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW
  • History status: Exact match
131
231
  • IL_69236.1
IL_69236.1
  • Basepair signature: cWW-cWW-R-R-R-R-R-R-R-R-cWW
  • History status: New id, no parents
181
232
  • IL_83917.1
IL_83917.1
  • Basepair signature: cWW-tSH-R-cSW-tWS-cWW
  • History status: New id, no parents
101
233
  • IL_02257.1
IL_02257.1
  • Basepair signature: cWW-tSH-tHH-tHS-cWW
  • History status: Exact match
111
234
  • IL_41516.1
IL_41516.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
101
235
  • IL_37408.1
IL_37408.1
  • Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW
  • History status: New id, 1 parent
  • Name: Kink-turn from 23S H58
141
236
  • IL_07252.1
IL_07252.1
  • Basepair signature: cWW-cWH-L-R-cWW
  • History status: Exact match
81
237
  • IL_08114.1
IL_08114.1
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
61
238
  • IL_92115.1
IL_92115.1
  • Basepair signature: cWW-cWW-L-R-R-tHW-L-R-tHH-cWW
  • History status: New id, no parents
171
239
  • IL_86059.1
IL_86059.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
71
240
  • IL_80505.1
IL_80505.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-cWW
  • History status: Exact match
111
241
  • IL_58270.1
IL_58270.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-R-R-R-R-R-R-R-R-cWW
  • History status: Exact match
191
242
  • IL_51572.1
IL_51572.1
  • Basepair signature: cWW-R-R-R-R-R-R-tWS-R-R-R-R-R-R-R-R-R-R-R-R-cWW
  • History status: Exact match
241
243
  • IL_33156.1
IL_33156.1
  • Basepair signature: cWW-L-cWW-cSW-L-R-R-L-cWW-cWW-cWW
  • History status: New id, no parents
171
244
  • IL_08588.1
IL_08588.1
  • Basepair signature: cWW-L-R-R-L-L-L-L-L-L-cWW
  • History status: Exact match
161
245
  • IL_11302.1
IL_11302.1
  • Basepair signature: cWW-L-R-R-tHW-L-cWW
  • History status: Exact match
101
246
  • IL_87523.1
IL_87523.1
  • Basepair signature: cWW-R-R-R-R-tHS-cWW
  • History status: Exact match
111
247
  • IL_16927.1
IL_16927.1
  • Basepair signature: cWW-L-R-R-R-L-L-cWW
  • History status: New id, no parents
101
248
  • IL_25808.1
IL_25808.1
  • Basepair signature: cWW-L-L-L-cWW
  • History status: Exact match
71
249
  • IL_47702.1
IL_47702.1
  • Basepair signature: cWW-R-tWH-L-R-R-R-R-L-L-cWW
  • History status: Exact match
161
250
  • IL_16921.1
IL_16921.1
  • Basepair signature: cWW-cSH-L-L-L-cWW-cWW
  • History status: Exact match
131
251
  • IL_57780.1
IL_57780.1
  • Basepair signature: cWW-tSH-cSH-tHS-tHS-cWW
  • History status: New id, no parents
101
252
  • IL_82650.1
IL_82650.1
  • Basepair signature: cWW-cWS-tSH-tHS-L-R-L-cWW
  • History status: Exact match
131
253
  • IL_55649.1
IL_55649.1
  • Basepair signature: cWW-tWH-L-R-cWW
  • History status: Exact match
91
254
  • IL_15205.1
IL_15205.1
  • Basepair signature: cWW-cWW-L-cSW-L-tHS-cWW
  • History status: Exact match
131
255
  • IL_23448.1
IL_23448.1
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
61
256
  • IL_86167.1
IL_86167.1
  • Basepair signature: cWW-R-R-R-R-cWW
  • History status: New id, 1 parent
91
257
  • IL_45126.1
IL_45126.1
  • Basepair signature: cWW-cWW-tWH-L-R-R-L-tHW-cWW
  • History status: New id, no parents
151
258
  • IL_66744.1
IL_66744.1
  • Basepair signature: cWW-L-R-R-L-L-L-L-cWW-cWW
  • History status: Exact match
  • Name: SSU Helix 21 (h21) IL2 E.coli
141
259
  • IL_27668.1
IL_27668.1
  • Basepair signature: cWW-L-L-L-L-L-tHS-cWW
  • History status: Exact match
121
260
  • IL_75231.1
IL_75231.1
  • Basepair signature: cWW-L-L-cSW-R-cWW
  • History status: New id, 1 parent
  • Name: 16S h32-h33-h34 3WJ
81
261
  • IL_22368.1
IL_22368.1
  • Basepair signature: cWW-cWW-L-L-L-cSW-cWW
  • History status: New id, 1 parent
111
262
  • IL_31006.1
IL_31006.1
  • Basepair signature: cWW-tSH-tHW-L-bif-cWW
  • History status: Exact match
  • Name: tSH-tHW-L-bif-cWW
121
263
  • IL_77862.1
IL_77862.1
  • Basepair signature: cWW-L-R-R-L-cWW
  • History status: Exact match
81
264
  • IL_98655.1
IL_98655.1
  • Basepair signature: cWW-L-cHW-L-L-tHH-tSW-L-cWW
  • History status: Exact match
  • Name: Part of H71 Junction in 26S rRNA from Yeast
161
265
  • IL_39044.1
IL_39044.1
  • Basepair signature: cWW-L-L-L-cWW
  • History status: New id, 1 parent
111
266
  • IL_04023.1
IL_04023.1
  • Basepair signature: cWW-R-bif-tWW-L-L-L-tWH-R-cWW
  • History status: New id, no parents
181
267
  • IL_53415.1
IL_53415.1
  • Basepair signature: cWW-tHH-cHH-cWW
  • History status: New id, 1 parent
  • Name: 23S H91 IL
51
268
  • IL_91379.1
IL_91379.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-L-cWW
  • History status: Exact match
121
269
  • IL_75415.1
IL_75415.1
  • Basepair signature: cWW-L-L-L-L-L-L-cWW
  • History status: Exact match
  • Name: Pseudo-knot forming internal loop
101
270
  • IL_91061.1
IL_91061.1
  • Basepair signature: cWW-tSH-R-tHH-tHS-cWW
  • History status: Exact match
121
271
  • IL_94312.1
IL_94312.1
  • Basepair signature: cWW-cWW-cWW-cWW-cWW-cWW-R-bif-tHS-cWW
  • History status: New id, no parents
171
272
  • IL_76263.1
IL_76263.1
  • Basepair signature: cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW
  • History status: Exact match
191
273
  • IL_59934.1
IL_59934.1
  • Basepair signature: cWW-tSH-tWH-tHS-R-R-cWW
  • History status: Exact match
  • Name: SSU Helix 23 (h23) Kink-turn E. coli
131
274
  • IL_97842.1
IL_97842.1
  • Basepair signature: cWW-R-R-R-R-cWS-cWW-cWW-L-R-cWW
  • History status: Exact match
161
275
  • IL_21077.1
IL_21077.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
101
276
  • IL_03030.1
IL_03030.1
  • Basepair signature: cWW-R-bif-tHW-tHS-cWW
  • History status: Exact match
  • Name: tSH-inserted-tHS
101
277
  • IL_40845.1
IL_40845.1
  • Basepair signature: cWW-cSW-cSH-R-cWW
  • History status: Exact match
81
278
  • IL_45432.1
IL_45432.1
  • Basepair signature: cWW-tSH-tHW-tWH-L-R-R-L-cWW
  • History status: Exact match
161
279
  • IL_01562.1
IL_01562.1
  • Basepair signature: cWW-tSH-L-R-R-L-L-cWW
  • History status: Exact match
121
280
  • IL_67360.1
IL_67360.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-R-L-L-L-L-tHH-tHS-cWW
  • History status: New id, no parents
281
281
  • IL_70069.1
IL_70069.1
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: tHS tHH bulge with S-turn
81
282
  • IL_28644.1
IL_28644.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
61
283
  • IL_85510.1
IL_85510.1
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
111
284
  • IL_91044.1
IL_91044.1
  • Basepair signature: cWW-L-R-tHW-cWW
  • History status: Exact match
111
285
  • IL_96591.1
IL_96591.1
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
91
286
  • IL_56616.1
IL_56616.1
  • Basepair signature: cWW-R-cWW-R-R-cHH-cWW-cSW-L-L-tWW-R-R-R-cWW
  • History status: New id, no parents
201
287
  • IL_63952.1
IL_63952.1
  • Basepair signature: cWW-L-R-R-tHW-tHW-L-R-cWW
  • History status: Exact match
131
288
  • IL_33217.1
IL_33217.1
  • Basepair signature: cWW-cSH-L-cSW-cWW-R-R-cWW
  • History status: Exact match
111
289
  • IL_37347.1
IL_37347.1
  • Basepair signature: cWW-cHW-L-tHW-tHW-tHW-bif-cWW
  • History status: Exact match
161
290
  • IL_96604.1
IL_96604.1
  • Basepair signature: cWW-cHW-L-L-L-tHH-L-L-L-cWW
  • History status: New id, no parents
141
291
  • IL_62296.1
IL_62296.1
  • Basepair signature: cWW-tSS-cSS-cWW-L-R-R-L-L-L-cWW
  • History status: Exact match
151
292
  • IL_11268.1
IL_11268.1
  • Basepair signature: cWW-L-R-R-R-R-R-L-L-L-L-tWW-cWW
  • History status: Exact match
181
293
  • IL_80854.1
IL_80854.1
  • Basepair signature: cWW-L-R-L-tHW-L-L-cWW
  • History status: New id, 1 parent
111
294
  • IL_15884.1
IL_15884.1
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
61
295
  • IL_25926.1
IL_25926.1
  • Basepair signature: cWW-L-R-cWW-cWW-L-R-R-R-R-L-L-L-L-cWW
  • History status: Exact match
191
296
  • IL_27640.1
IL_27640.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-L-tHS-cWW
  • History status: Exact match
151
297
  • IL_84773.1
IL_84773.1
  • Basepair signature: cWW-cWW-cWW-cWH-R-cWW
  • History status: New id, no parents
101
298
  • IL_03110.1
IL_03110.1
  • Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW
  • History status: Exact match
131
299
  • IL_36006.1
IL_36006.1
  • Basepair signature: cWW-cWW-L-cWW
  • History status: Exact match
81
300
  • IL_91078.1
IL_91078.1
  • Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW
  • History status: Exact match
141
301
  • IL_88367.1
IL_88367.1
  • Basepair signature: cWW-bif-R-cSH-tWH-tHS-L-R-tSH-cWW
  • History status: Exact match
151
302
  • IL_06847.1
IL_06847.1
  • Basepair signature: cWW-R-cSW-R-R-tHS-cWW
  • History status: Exact match
  • Name: Group II Intron IL
131
303
  • IL_84995.1
IL_84995.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
71
304
  • IL_24658.1
IL_24658.1
  • Basepair signature: cWW-R-bif-tSH-cSH-R-R-R-bif-tSH-bif-L-tWH-L-L-L-L-cWW
  • History status: New id, no parents
241
305
  • IL_45617.1
IL_45617.1
  • Basepair signature: cWW-L-R-R-cWW
  • History status: Exact match
71
306
  • IL_68827.1
IL_68827.1
  • Basepair signature: cWW-tSH-tHH-R-R-R-cWW
  • History status: Exact match
  • Name: Reverse Kink-Turn
111
307
  • IL_81280.1
IL_81280.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
281
308
  • IL_06468.1
IL_06468.1
  • Basepair signature: cWW-tWH-R-R-R-cWW-cWW
  • History status: Exact match
  • Name: 16S h40 3WJ E.c.
111
309
  • IL_27243.1
IL_27243.1
  • Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW
  • History status: Exact match
151
310
  • IL_05221.1
IL_05221.1
  • Basepair signature: cWW-cWW-bif-tHW-cWH-tSW-cSH-cWH-cSH-tHS-cWW
  • History status: Exact match
171
311
  • IL_52610.1
IL_52610.1
  • Basepair signature: cWW-tSS-tSH-L-L-L-L-cWW-L-L-L-L-L-L-L-L-cSS-L-L-L-cSW-cWW-L-cWW-R-tSH-R-R-R-R
  • History status: Exact match
371
312
  • IL_54542.1
IL_54542.1
  • Basepair signature: cWW-cWW-L-cSH-R-R-L-L-cWW
  • History status: New id, no parents
141
313
  • IL_88865.1
IL_88865.1
  • Basepair signature: cWW-L-cSH-L-cWW
  • History status: Exact match
91
314
  • IL_48268.1
IL_48268.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
71
315
  • IL_89794.1
IL_89794.1
  • Basepair signature: cWW-tSH-tSH-tSS-tSS-R-cWW
  • History status: Exact match
141
316
  • IL_70529.1
IL_70529.1
  • Basepair signature: cWW-cWW-L-R-cWW-L-R-R-R-L-L-tHS-R-R-cWW
  • History status: Exact match
211
317
  • IL_99739.1
IL_99739.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-L-L-cWW
  • History status: New id, no parents
151
318
  • IL_86981.1
IL_86981.1
  • Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.
151
319
  • IL_80652.1
IL_80652.1
  • Basepair signature: cWW-R-cSH-tWH-tSH-tHS-cWW
  • History status: Exact match
141
320
  • IL_86336.1
IL_86336.1
  • Basepair signature: cWW-L-R-L-L-L-cWW
  • History status: Exact match
101
321
  • IL_40527.1
IL_40527.1
  • Basepair signature: cWW-L-R-tSS-L-tSH-L-R-L-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn
161
322
  • IL_79910.1
IL_79910.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
71
323
  • IL_90633.1
IL_90633.1
  • Basepair signature: cWW-R-R-R-tSW-L-L-cWW
  • History status: Exact match
111
324
  • IL_58965.1
IL_58965.1
  • Basepair signature: cWW-cWW-cWW-R-cWW-L-L-L-L-L-cWW-bif-R-tSH-R-R
  • History status: New id, no parents
241
325
  • IL_47687.1
IL_47687.1
  • Basepair signature: cWW-tWH-tWH-tWH-L-R-L-tWW-cWW
  • History status: Exact match
141
326
  • IL_41371.1
IL_41371.1
  • Basepair signature: cWW-L-R-cWW-bif-tHW-cWH-cSH-cWH-L-cSH-R-cWW
  • History status: Exact match
191
327
  • IL_87394.1
IL_87394.1
  • Basepair signature: cWW-L-R-R-R-R-R-cWW
  • History status: Exact match
101
328
  • IL_60334.1
IL_60334.1
  • Basepair signature: cWW-L-R-R-L-L-L-cWW
  • History status: New id, no parents
111
329
  • IL_03808.1
IL_03808.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-cWW
  • History status: Exact match
131
330
  • IL_29058.1
IL_29058.1
  • Basepair signature: cWW-L-R-R-R-R-R-L-L-L-L-cWW
  • History status: Exact match
161
331
  • IL_99784.1
IL_99784.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
81
332
  • IL_48036.1
IL_48036.1
  • Basepair signature: cWW-L-R-L-L-L-cWW
  • History status: Exact match
101
333
  • IL_93035.1
IL_93035.1
  • Basepair signature: cWW-L-tHW-tWW-L-L-tHH-cSH-cWS-cWW-L-R-L-cWW
  • History status: New id, no parents
221
334
  • IL_39324.1
IL_39324.1
  • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW
  • History status: Exact match
201
335
  • IL_84276.1
IL_84276.1
  • Basepair signature: cWW-L-tHS-cWW-R-R-cWW
  • History status: Exact match
141
336
  • IL_31754.1
IL_31754.1
  • Basepair signature: cWW-cSW-tHW-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin H95 23S rRNA E.c.
131
337
  • IL_41139.1
IL_41139.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
81
338
  • IL_91857.1
IL_91857.1
  • Basepair signature: cWW-cSS-L-L-L-tSS-tHW-L-R-cWW
  • History status: New id, 1 parent
  • Name: Kink-turn
131
339
  • IL_56083.1
IL_56083.1
  • Basepair signature: cWW-L-R-R-R-R-L-tHS-tHS-cWW
  • History status: New id, no parents
141
340
  • IL_90660.1
IL_90660.1
  • Basepair signature: cWW-bif-cWW-L-tSH-tHS-R-R-cWW
  • History status: New id, no parents
151
341
  • IL_98924.1
IL_98924.1
  • Basepair signature: cWW-L-L-L-cWW-cWW
  • History status: Exact match
101
342
  • IL_59907.1
IL_59907.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
281
343
  • IL_42891.1
IL_42891.1
  • Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW
  • History status: Exact match
161
344
  • IL_14652.1
IL_14652.1
  • Basepair signature: cWW-bif-L-cSW-L-bif-cWW
  • History status: New id, no parents
101
345
  • IL_97803.1
IL_97803.1
  • Basepair signature: cWW-R-R-R-cWW-tSS-cWW-cWW-bif-L-L-L-L-L-cWW-cSS-cSS-L-L-cWW
  • History status: Exact match
261
346
  • IL_40852.1
IL_40852.1
  • Basepair signature: cWW-cSW-L-L-tHS-cWS-cWW
  • History status: New id, 1 parent
131
347
  • IL_02957.1
IL_02957.1
  • Basepair signature: cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW
  • History status: Exact match
261
348
  • IL_05513.1
IL_05513.1
  • Basepair signature: cWW-L-L-L-tWH-L-L-L-cWW
  • History status: Exact match
121
349
  • IL_22247.1
IL_22247.1
  • Basepair signature: cWW-R-R-cWH-cWW-cWS-L-cWW
  • History status: New id, no parents
171
350
  • IL_09333.1
IL_09333.1
  • Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW
  • History status: Exact match
  • Name: SSU Helix 8 (h8) IL T. thermophilus
131
351
  • IL_05920.1
IL_05920.1
  • Basepair signature: cWW-R-R-cWW
  • History status: New id, 1 parent
  • Name: One or more bulged nucleotides
71
352
  • IL_57334.1
IL_57334.1
  • Basepair signature: cWW-L-R-L-cWW-cWW
  • History status: Exact match
111
353
  • IL_06306.1
IL_06306.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-R-L-cWW
  • History status: Exact match
141
354
  • IL_77296.1
IL_77296.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW
  • History status: Exact match
151
355
  • IL_93855.1
IL_93855.1
  • Basepair signature: cWW-L-R-L-L-L-L-L-cWW
  • History status: Exact match
121
356
  • IL_54405.1
IL_54405.1
  • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-R-cWW-cWW
  • History status: New id, no parents
161
357
  • IL_74400.1
IL_74400.1
  • Basepair signature: cWW-cSH-L-cWW
  • History status: Exact match
101
358
  • IL_62617.1
IL_62617.1
  • Basepair signature: cWW-L-tWH-R-R-L-cWW-cWW
  • History status: Exact match
121
359
  • IL_23639.1
IL_23639.1
  • Basepair signature: cWW-tWH-tHS-L-cWW
  • History status: Exact match
  • Name: tWH-tHS-L-cWW
101
360
  • IL_00346.1
IL_00346.1
  • Basepair signature: cWW-L-R-R-R-L-L-cWW-L-R-R-R-R-L-cWW
  • History status: Exact match
211
361
  • IL_69482.1
IL_69482.1
  • Basepair signature: cWW-L-R-cWW
  • History status: Exact match
91
362
  • IL_25420.1
IL_25420.1
  • Basepair signature: cWW-tSH-tWH-tWH-L-R-R-L-L-tSH-cWW
  • History status: Exact match
161
363
  • IL_41215.1
IL_41215.1
  • Basepair signature: cWW-R-R-cWW
  • History status: Exact match
61
364
  • IL_77014.1
IL_77014.1
  • Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW
  • History status: Exact match
111
365
  • IL_35267.1
IL_35267.1
  • Basepair signature: cWW-bif-L-cWH-cWS-cWW-R-R-R-cWW
  • History status: Exact match
181
366
  • IL_40364.1
IL_40364.1
  • Basepair signature: cWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW
  • History status: Exact match
261
367
  • IL_36321.1
IL_36321.1
  • Basepair signature: cWW-tHW-bif-L-tSS-tWH-tWS-R-bif-tWH-R-R-R-R-R-cWW
  • History status: New id, no parents
241
368
  • IL_21254.1
IL_21254.1
  • Basepair signature: cWW-tWH-cWW-tHS-tSS-R-R-cWW
  • History status: Exact match
  • Name: SSU Helix 11 (h11) IL Kink-turn T. thermophilus
141
369
  • IL_86060.1
IL_86060.1
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
61
370
  • IL_21577.1
IL_21577.1
  • Basepair signature: cWW-L-R-L-L-cWW
  • History status: New id, 1 parent
  • Name: LSU Helix 89 (H89) IL2 | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1
91
371
  • IL_03282.1
IL_03282.1
  • Basepair signature: cWW-tHW-tHS-cWW-cWW
  • History status: Exact match
101
372
  • IL_12192.1
IL_12192.1
  • Basepair signature: cWW-L-cWW-cWW-L-R-R-R-L-L-cWW
  • History status: New id, no parents
161



Exact match 193; Updated, 1 parent 62; New id, 1 parent 37; New id, no parents 35; New id, 2 parents 16; > 2 parents 16; Updated, 2 parents 13;