4V8O Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V8O_001 | 1/AA/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_4V8O_003 | 1/AA/156:165 | No text annotation Not in a motif group | ||
| HL_4V8O_004 | 1/AA/189C:189H | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_4V8O_005 | 1/AA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_4V8O_006 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_4V8O_007 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_6CZR_078 HL_42097.1 | |
| HL_4V8O_008 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_4V8O_010 | 1/AA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_4V8O_011 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_4V8O_012 | 1/AA/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_4V8O_013 | 1/AA/522:527 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_4V8O_014 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_4V8O_015 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_4V8O_016 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_4V8O_017 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_4V8O_018 | 1/AA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_4V8O_019 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_4V8O_020 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_6CZR_091 HL_42097.1 | |
| HL_4V8O_021 | 1/AA/963:972 | No text annotation Not in a motif group | ||
| HL_4V8O_022 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_4V8O_024 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_4V8O_025 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
| HL_4V8O_026 | 1/AA/1128:1143 | No text annotation Not in a motif group | ||
| HL_4V8O_027 | 1/AA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_4V8O_028 | 1/AA/1265:1270 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_4V8O_029 | 1/AA/1314:1323 | No text annotation Not in a motif group | geometric HL_4LFB_029 HL_89380.2 | |
| HL_4V8O_030 | 1/AA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_4V8O_031 | 1/AA/1445:1457 | No text annotation Not in a motif group | ||
| HL_4V8O_032 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4V8O_033 | 1/AV/13:22 | No text annotation Not in a motif group | homologous HL_4V90_032 HL_14843.1 | |
| HL_4V8O_034 | 1/AV/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_6UFG_007 HL_53597.2 | |
| HL_4V8O_035 | 1/AV/51:63 | No text annotation Not in a motif group | ||
| HL_4V8O_036 | 1/BA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_4V8O_037 | 1/BA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_4V8O_038 | 1/BA/122:129 | No text annotation Not in a motif group | ||
| HL_4V8O_039 | 1/BA/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_4V8O_040 | 1/BA/154:172 | No text annotation Not in a motif group | geometric HL_4WF9_053 HL_09136.1 | |
| HL_4V8O_041 | 1/BA/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_4V8O_042 | 1/BA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_4V8O_043 | 1/BA/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_4V8O_044 | 1/BA/271I:271O | No text annotation Not in a motif group | ||
| HL_4V8O_045 | 1/BA/304:313 | No text annotation Not in a motif group | ||
| HL_4V8O_046 | 1/BA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_4V8O_047 | 1/BA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_4V8O_048 | 1/BA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_4V8O_049 | 1/BA/410:417 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
| HL_4V8O_050 | 1/BA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4V8O_051 | 1/BA/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_4V8O_052 | 1/BA/543:549 | GNRA Not in a motif group | geometric HL_4OQU_001 HL_42097.1 | |
| HL_4V8O_053 | 1/BA/564:577 | No text annotation Not in a motif group | ||
| HL_4V8O_054 | 1/BA/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_4V8O_055 | 1/BA/629:634 | No text annotation Not in a motif group | homologous HL_7A0S_020 HL_42097.1 | |
| HL_4V8O_056 | 1/BA/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_4V8O_057 | 1/BA/654G:654N | No text annotation Not in a motif group | ||
| HL_4V8O_058 | 1/BA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_4V8O_059 | 1/BA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_4V8O_060 | 1/BA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_4V8O_061 | 1/BA/826:831 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_64365.1 | |
| HL_4V8O_062 | 1/BA/875:902 | No text annotation Not in a motif group | ||
| HL_4V8O_063 | 1/BA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_4V8O_064 | 1/BA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_4V8O_065 | 1/BA/1042:1113 | No text annotation Not in a motif group | ||
| HL_4V8O_066 | 1/BA/1168:1181 | No text annotation Not in a motif group | ||
| HL_4V8O_067 | 1/BA/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_4V8O_068 | 1/BA/1281:1289 | No text annotation Not in a motif group | homologous HL_7A0S_032 HL_89380.2 | |
| HL_4V8O_069 | 1/BA/1324:1330 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_4V8O_070 | 1/BA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_4V8O_071 | 1/BA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_4V8O_072 | 1/BA/1450A:1461 | No text annotation Not in a motif group | ||
| HL_4V8O_073 | 1/BA/1491:1499 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_4V8O_074 | 1/BA/1532:1537 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_4V8O_075 | 1/BA/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_4V8O_076 | 1/BA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_4V8O_077 | 1/BA/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_4V8O_078 | 1/BA/1691:1696 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_4V8O_079 | 1/BA/1718:1744 | No text annotation Not in a motif group | ||
| HL_4V8O_080 | 1/BA/1752:1756 | No text annotation Not in a motif group | homologous HL_7A0S_044 HL_76539.2 | |
| HL_4V8O_081 | 1/BA/1776:1788 | No text annotation Not in a motif group | homologous HL_7A0S_045 HL_43667.1 | |
| HL_4V8O_082 | 1/BA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_4V8O_083 | 1/BA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_4V8O_084 | 1/BA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4V8O_085 | 1/BA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_4V8O_086 | 1/BA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_4V8O_087 | 1/BA/2142:2149 | No text annotation Not in a motif group | ||
| HL_4V8O_088 | 1/BA/2205:2219 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_4V8O_089 | 1/BA/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_4V8O_090 | 1/BA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_4V8O_091 | 1/BA/2303:2313 | No text annotation Not in a motif group | ||
| HL_4V8O_092 | 1/BA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_4V8O_093 | 1/BA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_4V8O_094 | 1/BA/2373:2380 | No text annotation Not in a motif group | geometric HL_4WF9_053 HL_09136.1 | |
| HL_4V8O_095 | 1/BA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_4V8O_096 | 1/BA/2470:2480 | No text annotation Not in a motif group | ||
| HL_4V8O_097 | 1/BA/2528:2535 | No text annotation Not in a motif group | homologous HL_7A0S_060 HL_88526.2 | |
| HL_4V8O_098 | 1/BA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4V8O_099 | 1/BA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_4V8O_100 | 1/BA/2658:2663 | GNRA Not in a motif group | geometric HL_5F9R_003 HL_42097.1 | |
| HL_4V8O_101 | 1/BA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_4V8O_102 | 1/BA/2744:2760 | No text annotation Not in a motif group | ||
| HL_4V8O_103 | 1/BA/2793:2803 | No text annotation Not in a motif group | ||
| HL_4V8O_104 | 1/BA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_4V8O_105 | 1/BA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_4V8O_106 | 1/BB/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_070 HL_87939.1 | |
| HL_4V8O_107 | 1/BB/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V8O_002 | No text annotation | ||
| HL_4V8O_009 | UNCG | ||
| HL_4V8O_023 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V8O_001 | 1/AA/30:34, 1/AA/550:553 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.2 | |
| IL_4V8O_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_4V8O_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_4V8O_004 | 1/AA/53:56, 1/AA/356:358 | No text annotation Not in a motif group | ||
| IL_4V8O_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_4V8O_006 | 1/AA/67:69, 1/AA/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_4V8O_007 | 1/AA/69:76, 1/AA/93:100 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_4V8O_008 | 1/AA/129:131, 1/AA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_4V8O_009 | 1/AA/132:136, 1/AA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_4V8O_011 | 1/AA/148:154, 1/AA/167:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_6CZR_121 IL_80604.2 | |
| IL_4V8O_012 | 1/AA/186:188, 1/AA/189L:191 | No text annotation Not in a motif group | geometric IL_4LFB_010 IL_95997.1 | |
| IL_4V8O_013 | 1/AA/188:189A, 1/AA/189J:189L | CA cWW Not in a motif group | geometric IL_5ED2_004 IL_95997.1 | |
| IL_4V8O_014 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_4V8O_015 | 1/AA/248:253, 1/AA/273:276 | No text annotation Not in a motif group | ||
| IL_4V8O_016 | 1/AA/292:293, 1/AA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4V8O_018 | 1/AA/367:369, 1/AA/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_4V8O_019 | 1/AA/370:375, 1/AA/389:391 | No text annotation Not in a motif group | ||
| IL_4V8O_020 | 1/AA/375:376, 1/AA/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_4V8O_021 | 1/AA/409:417, 1/AA/426:433 | No text annotation Not in a motif group | homologous IL_6CZR_129 IL_58819.1 | |
| IL_4V8O_022 | 1/AA/446:450, 1/AA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_4V8O_023 | 1/AA/450:456, 1/AA/475:483 | No text annotation Not in a motif group | geometric IL_6CZR_131 IL_30149.1 | |
| IL_4V8O_024 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_4V8O_025 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4V8O_026 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_4V8O_027 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_4V8O_028 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_4V8O_029 | 1/AA/605:612, 1/AA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_4V8O_030 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_50694.2 | |
| IL_4V8O_031 | 1/AA/657:658, 1/AA/747:749 | Major groove platform Not in a motif group | geometric IL_4LFB_028 IL_27635.1 | |
| IL_4V8O_033 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4V8O_034 | 1/AA/673:678, 1/AA/712:717 | No text annotation Not in a motif group | homologous IL_5J7L_034 IL_04668.1 | |
| IL_4V8O_035 | 1/AA/683:688, 1/AA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4V8O_036 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | homologous IL_6CZR_144 IL_29346.1 | |
| IL_4V8O_037 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_4V8O_038 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | geometric IL_4LFB_034 IL_24606.2 | |
| IL_4V8O_039 | 1/AA/894:896, 1/AA/903:905 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_4V8O_040 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_4V8O_041 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_4V8O_042 | 1/AA/933:936, 1/AA/1379:1384 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_93211.1 | |
| IL_4V8O_043 | 1/AA/952:954, 1/AA/1226:1229 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4WF9_003 IL_65006.1 | |
| IL_4V8O_044 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform Not in a motif group | homologous IL_4LFB_039 IL_47078.1 | |
| IL_4V8O_045 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_4V8O_046 | 1/AA/1052:1057, 1/AA/1203:1206 | No text annotation Not in a motif group | ||
| IL_4V8O_047 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | geometric IL_4LFB_045 IL_93353.1 | |
| IL_4V8O_048 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_4V8O_049 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_4V8O_051 | 1/AA/1124:1128, 1/AA/1143:1149 | No text annotation Not in a motif group | homologous IL_4LFB_048 IL_85222.1 | |
| IL_4V8O_052 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4V8O_053 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | ||
| IL_4V8O_054 | 1/AA/1259:1262, 1/AA/1273:1276 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_4V8O_055 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_4V8O_057 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_4V8O_058 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4V8O_059 | 1/AA/1405:1407, 1/AA/1494:1496 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_4V8O_060 | 1/AA/1407:1409, 1/AA/1491:1494 | No text annotation Not in a motif group | ||
| IL_4V8O_061 | 1/AA/1412:1414, 1/AA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_4V8O_062 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_4V8O_063 | 1/AA/1431:1435, 1/AA/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_4V8O_064 | 1/AA/1435:1437, 1/AA/1464:1466 | No text annotation Not in a motif group | geometric IL_6CZR_171 IL_95997.1 | |
| IL_4V8O_065 | 1/AA/1440:1443, 1/AA/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 | |
| IL_4V8O_067 | 1/AV/49:51, 1/AV/63:65 | No text annotation Not in a motif group | geometric IL_2ZNI_001 IL_51629.2 | |
| IL_4V8O_068 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_4V8O_069 | 1/BA/36:37, 1/BA/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_4V8O_070 | 1/BA/42:43, 1/BA/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_4V8O_071 | 1/BA/75:76, 1/BA/110:112 | No text annotation Not in a motif group | ||
| IL_4V8O_073 | 1/BA/81:85, 1/BA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_4V8O_074 | 1/BA/183:184, 1/BA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_4V8O_075 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_4V8O_076 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_4V8O_077 | 1/BA/272D:272F, 1/BA/363D:364 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
| IL_4V8O_078 | 1/BA/272J:280, 1/BA/360:363 | No text annotation Not in a motif group | ||
| IL_4V8O_079 | 1/BA/280:284, 1/BA/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_4V8O_080 | 1/BA/287:291, 1/BA/349:354 | No text annotation Not in a motif group | ||
| IL_4V8O_081 | 1/BA/293:296, 1/BA/342:347 | No text annotation Not in a motif group | ||
| IL_4V8O_082 | 1/BA/378:380, 1/BA/394:396 | No text annotation Not in a motif group | geometric IL_7RQB_083 IL_95997.1 | |
| IL_4V8O_083 | 1/BA/481:484, 1/BA/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_4V8O_085 | 1/BA/605:610, 1/BA/618:623 | No text annotation Not in a motif group | ||
| IL_4V8O_086 | 1/BA/672:674, 1/BA/806:808 | No text annotation Not in a motif group | homologous IL_4WF9_020 IL_95997.1 | |
| IL_4V8O_087 | 1/BA/674:678, 1/BA/799:806 | No text annotation Not in a motif group | geometric IL_7A0S_015 IL_17470.6 | |
| IL_4V8O_088 | 1/BA/697:698, 1/BA/763:765 | Single bulged A Not in a motif group | geometric IL_7A0S_016 IL_37497.2 | |
| IL_4V8O_089 | 1/BA/702:703, 1/BA/728:730 | Single bulged G Not in a motif group | geometric IL_4WF9_023 IL_00225.2 | |
| IL_4V8O_090 | 1/BA/703:707, 1/BA/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_4V8O_092 | 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7A0S_019 IL_05564.2 | |
| IL_4V8O_093 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_4V8O_095 | 1/BA/837:838, 1/BA/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_4V8O_096 | 1/BA/844:846, 1/BA/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_4V8O_097 | 1/BA/846:850, 1/BA/927:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_4V8O_098 | 1/BA/855:857, 1/BA/920:922 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_4V8O_099 | 1/BA/857:862, 1/BA/915:920 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_4V8O_100 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform Not in a motif group | homologous IL_4WF9_032 IL_42622.2 | |
| IL_4V8O_101 | 1/BA/864:868, 1/BA/909:912 | C-loop Not in a motif group | homologous IL_4WF9_033 IL_02509.1 | |
| IL_4V8O_102 | 1/BA/870:872, 1/BA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_52767.2 | |
| IL_4V8O_103 | 1/BA/952:954, 1/BA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_4V8O_104 | 1/BA/994:997, 1/BA/1158:1160 | No text annotation Not in a motif group | geometric IL_5MWI_003 IL_95997.1 | |
| IL_4V8O_105 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN Not in a motif group | geometric IL_5J7L_277 IL_89002.2 | |
| IL_4V8O_107 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.7 | |
| IL_4V8O_108 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.13 | |
| IL_4V8O_110 | 1/BA/1018:1024, 1/BA/1140:1144 | No text annotation Not in a motif group | ||
| IL_4V8O_111 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_4V8O_112 | 1/BA/1030:1034, 1/BA/1121:1124 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5J7L_033 IL_71110.1 | |
| IL_4V8O_113 | 1/BA/1039:1042, 1/BA/1113:1116 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_4V8O_114 | 1/BA/1165:1168, 1/BA/1181:1184 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_7A0S_040 IL_30621.2 | |
| IL_4V8O_115 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_4V8O_116 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_4V8O_117 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_4V8O_118 | 1/BA/1219:1221, 1/BA/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_4V8O_119 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_4V8O_120 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.2 | |
| IL_4V8O_123 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop Not in a motif group | geometric IL_7RQB_051 IL_63596.6 | |
| IL_4V8O_124 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_4V8O_125 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_4V8O_127 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation Not in a motif group | ||
| IL_4V8O_128 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_4V8O_129 | 1/BA/1433:1435, 1/BA/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_4V8O_130 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_4V8O_131 | 1/BA/1448:1450, 1/BA/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_4V8O_132 | 1/BA/1469:1473, 1/BA/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_4V8O_134 | 1/BA/1481:1486, 1/BA/1503:1510 | No text annotation Not in a motif group | ||
| IL_4V8O_135 | 1/BA/1486:1489, 1/BA/1500:1503 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_30621.2 | |
| IL_4V8O_136 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A Not in a motif group | geometric IL_2OZB_001 IL_37497.2 | |
| IL_4V8O_137 | 1/BA/1526:1529, 1/BA/1540:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
| IL_4V8O_138 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4V8O_139 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_4V8O_140 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_4V8O_141 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 IL_82842.2 | |
| IL_4V8O_142 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_5J7L_308 IL_65969.2 | |
| IL_4V8O_144 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_4V8O_145 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_4V8O_146 | 1/BA/1837:1840, 1/BA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_005 IL_88739.1 | |
| IL_4V8O_147 | 1/BA/1840:1842, 1/BA/1898:1902 | No text annotation Not in a motif group | ||
| IL_4V8O_148 | 1/BA/1846:1849, 1/BA/1893:1894 | No text annotation Not in a motif group | homologous IL_4WF9_072 NA | |
| IL_4V8O_149 | 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7A0S_069 IL_90318.1 | |
| IL_4V8O_150 | 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_4V8O_151 | 1/BA/1933:1934, 1/BA/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_59677.2 | |
| IL_4V8O_152 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_4V8O_153 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_4V8O_154 | 1/BA/2054:2057, 1/BA/2611:2615 | No text annotation Not in a motif group | ||
| IL_4V8O_155 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_4V8O_156 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_4V8O_158 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_4V8O_159 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_4V8O_160 | 1/BA/2098:2101, 1/BA/2188:2191 | No text annotation Not in a motif group | ||
| IL_4V8O_161 | 1/BA/2101:2103, 1/BA/2186:2188 | No text annotation Not in a motif group | ||
| IL_4V8O_164 | 1/BA/2108:2122, 1/BA/2176:2181 | No text annotation Not in a motif group | ||
| IL_4V8O_165 | 1/BA/2123:2127, 1/BA/2161:2175 | No text annotation Not in a motif group | ||
| IL_4V8O_166 | 1/BA/2128:2136, 1/BA/2155:2160 | No text annotation Not in a motif group | ||
| IL_4V8O_168 | 1/BA/2140:2142, 1/BA/2149:2151 | No text annotation Not in a motif group | ||
| IL_4V8O_169 | 1/BA/2297:2299, 1/BA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 IL_38958.7 | |
| IL_4V8O_171 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared Not in a motif group | geometric IL_7A0S_081 IL_09705.9 | |
| IL_4V8O_174 | 1/BA/2400:2403, 1/BA/2414:2416 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 | |
| IL_4V8O_175 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_4V8O_176 | 1/BA/2457:2461, 1/BA/2489:2494 | No text annotation Not in a motif group | ||
| IL_4V8O_177 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared Not in a motif group | geometric IL_7RQB_095 IL_56467.8 | |
| IL_4V8O_178 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_4V8O_179 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_4V8O_180 | 1/BA/2512:2513, 1/BA/2571:2574 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_71530.2 | |
| IL_4V8O_181 | 1/BA/2522:2523, 1/BA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_4V8O_183 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_4V8O_184 | 1/BA/2635:2641, 1/BA/2773:2783 | No text annotation Not in a motif group | ||
| IL_4V8O_186 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 IL_16458.1 | |
| IL_4V8O_188 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop Not in a motif group | geometric IL_4JRC_003 IL_63596.6 | |
| IL_4V8O_189 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_4V8O_190 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_4V8O_191 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_4V8O_193 | 1/BA/2838:2839, 1/BA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_4V8O_194 | 1/BA/2843:2846, 1/BA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_4V8O_195 | 1/BA/2847:2852, 1/BA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_4V8O_196 | 1/BB/20:22, 1/BB/61:63 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_427 IL_51629.2 | |
| IL_4V8O_197 | 1/BB/23:28, 1/BB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4V8O_199 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_4V9F_103 IL_09061.6 | |
| IL_4V8O_200 | 1/BB/33:38, 1/BB/44:49 | No text annotation Not in a motif group | homologous IL_7A0S_105 IL_93630.2 | |
| IL_4V8O_201 | 1/BB/71:79, 1/BB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_4V8O_202 | 1/BB/80:82, 1/BB/95:97 | No text annotation Not in a motif group | geometric IL_7A0S_107 IL_51629.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V8O_010 | Isolated cWH basepair | ||
| IL_4V8O_017 | No text annotation | ||
| IL_4V8O_032 | No text annotation | ||
| IL_4V8O_050 | Tandem non-canonical cWW pairs | ||
| IL_4V8O_056 | Tandem non-canonical cWW pairs | ||
| IL_4V8O_066 | No text annotation | ||
| IL_4V8O_072 | No text annotation | ||
| IL_4V8O_084 | No text annotation | ||
| IL_4V8O_091 | No text annotation | ||
| IL_4V8O_094 | No text annotation | ||
| IL_4V8O_106 | No text annotation | ||
| IL_4V8O_109 | Stack and bulge | ||
| IL_4V8O_121 | Isolated cWH basepair | ||
| IL_4V8O_122 | No text annotation | ||
| IL_4V8O_126 | No text annotation | ||
| IL_4V8O_133 | No text annotation | ||
| IL_4V8O_143 | No text annotation | ||
| IL_4V8O_157 | Isolated cWH basepair | ||
| IL_4V8O_162 | No text annotation | ||
| IL_4V8O_163 | No text annotation | ||
| IL_4V8O_167 | Tandem non-canonical cWW pairs | ||
| IL_4V8O_170 | No text annotation | ||
| IL_4V8O_172 | Isolated cWS basepair | ||
| IL_4V8O_173 | No text annotation | ||
| IL_4V8O_182 | UU cWW | ||
| IL_4V8O_185 | UG cWW | ||
| IL_4V8O_187 | UG cWW | ||
| IL_4V8O_192 | No text annotation | ||
| IL_4V8O_198 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V8O_001 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4V8O_002 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation Not in a motif group | ||
| J3_4V8O_003 | 1/AA/955:962, 1/AA/973:985, 1/AA/1220:1225 | No text annotation Not in a motif group | ||
| J3_4V8O_004 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | ||
| J3_4V8O_006 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation Not in a motif group | ||
| J3_4V8O_007 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation Not in a motif group | ||
| J3_4V8O_008 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation Not in a motif group | ||
| J3_4V8O_009 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation Not in a motif group | ||
| J3_4V8O_010 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation Not in a motif group | homologous J3_7A0S_005 NA | |
| J3_4V8O_011 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation Not in a motif group | homologous J3_7A0S_006 NA | |
| J3_4V8O_012 | 1/BA/1306:1309, 1/BA/1605:1612, 1/BA/1619:1622 | No text annotation Not in a motif group | ||
| J3_4V8O_013 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4V8O_014 | 1/BA/2295:2297, 1/BA/2321:2323, 1/BA/2332:2337 | No text annotation Not in a motif group | ||
| J3_4V8O_015 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_4V8O_016 | 1/BB/11:20, 1/BB/63:70, 1/BB/107:110 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V8O_005 | No text annotation |
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