5KCS Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5KCS_001 | 1/1A/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_5KCS_002 | 1/1A/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_5KCS_003 | 1/1A/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_5KCS_004 | 1/1A/137:142 | No text annotation Not in a motif group | ||
| HL_5KCS_005 | 1/1A/157:169 | No text annotation Not in a motif group | ||
| HL_5KCS_006 | 1/1A/194:201 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_06192.2 | |
| HL_5KCS_007 | 1/1A/225:230 | No text annotation Not in a motif group | homologous HL_7A0S_007 HL_02862.2 | |
| HL_5KCS_008 | 1/1A/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_5KCS_009 | 1/1A/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_5KCS_010 | 1/1A/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_5KCS_011 | 1/1A/381:393 | No text annotation Not in a motif group | ||
| HL_5KCS_012 | 1/1A/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_5KCS_013 | 1/1A/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_5KCS_014 | 1/1A/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_5KCS_015 | 1/1A/545:548 | No text annotation Not in a motif group | homologous HL_7A0S_017 HL_53837.1 | |
| HL_5KCS_016 | 1/1A/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_89380.2 | |
| HL_5KCS_017 | 1/1A/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_5KCS_018 | 1/1A/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_5KCS_019 | 1/1A/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_77805.2 | |
| HL_5KCS_020 | 1/1A/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_5KCS_021 | 1/1A/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
| HL_5KCS_022 | 1/1A/779:785 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.1 | |
| HL_5KCS_023 | 1/1A/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_64365.1 | |
| HL_5KCS_025 | 1/1A/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
| HL_5KCS_026 | 1/1A/978:985 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_64430.2 | |
| HL_5KCS_027 | 1/1A/1092:1099 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.2 | |
| HL_5KCS_028 | 1/1A/1167:1182 | No text annotation Not in a motif group | ||
| HL_5KCS_029 | 1/1A/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_5KCS_030 | 1/1A/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_5KCS_031 | 1/1A/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_5KCS_032 | 1/1A/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_5KCS_033 | 1/1A/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_5KCS_034 | 1/1A/1450:1461 | No text annotation Not in a motif group | ||
| HL_5KCS_035 | 1/1A/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_5KCS_036 | 1/1A/1531:1540 | No text annotation Not in a motif group | ||
| HL_5KCS_037 | 1/1A/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_5KCS_038 | 1/1A/1612:1619 | No text annotation Not in a motif group | ||
| HL_5KCS_039 | 1/1A/1629:1637 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_5KCS_040 | 1/1A/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
| HL_5KCS_041 | 1/1A/1727:1733 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_5KCS_042 | 1/1A/1752:1756 | No text annotation Not in a motif group | homologous HL_4WF9_042 HL_76539.2 | |
| HL_5KCS_043 | 1/1A/1776:1788 | No text annotation Not in a motif group | homologous HL_7A0S_045 HL_43667.1 | |
| HL_5KCS_044 | 1/1A/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_5KCS_045 | 1/1A/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_42097.1 | |
| HL_5KCS_046 | 1/1A/1910:1920 | No text annotation Not in a motif group | homologous HL_5J7L_181 NA | |
| HL_5KCS_047 | 1/1A/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_5KCS_048 | 1/1A/2027:2036 | No text annotation Not in a motif group | ||
| HL_5KCS_049 | 1/1A/2141:2150 | No text annotation Not in a motif group | ||
| HL_5KCS_050 | 1/1A/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_5KCS_051 | 1/1A/2248:2256 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_5KCS_052 | 1/1A/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_5KCS_053 | 1/1A/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_5KCS_054 | 1/1A/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_5KCS_055 | 1/1A/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_5KCS_056 | 1/1A/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_5KCS_057 | 1/1A/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_5KCS_058 | 1/1A/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_5KCS_059 | 1/1A/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_5KCS_060 | 1/1A/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_5KCS_061 | 1/1A/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_5KCS_062 | 1/1A/2658:2663 | GNRA Not in a motif group | geometric HL_5B2T_003 HL_42097.1 | |
| HL_5KCS_063 | 1/1A/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_5KCS_064 | 1/1A/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_5KCS_065 | 1/1A/2795:2801 | Other HL Not in a motif group | homologous HL_5J7L_200 HL_34168.2 | |
| HL_5KCS_066 | 1/1A/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_5KCS_067 | 1/1A/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_5KCS_068 | 1/1B/34:48 | No text annotation Not in a motif group | ||
| HL_5KCS_069 | 1/1B/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_5KCS_070 | 1/1a/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_5KCS_071 | 1/1a/78:91 | No text annotation Not in a motif group | ||
| HL_5KCS_072 | 1/1a/158:163 | No text annotation Not in a motif group | ||
| HL_5KCS_073 | 1/1a/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_5KCS_074 | 1/1a/206:213 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
| HL_5KCS_075 | 1/1a/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_5KCS_076 | 1/1a/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_5KCS_077 | 1/1a/318:335 | No text annotation Not in a motif group | ||
| HL_5KCS_078 | 1/1a/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_5KCS_079 | 1/1a/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_5KCS_080 | 1/1a/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_5KCS_081 | 1/1a/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
| HL_5KCS_082 | 1/1a/521:528 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_5KCS_083 | 1/1a/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_5KCS_084 | 1/1a/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_5KCS_085 | 1/1a/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_5KCS_086 | 1/1a/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_5KCS_087 | 1/1a/840:846 | No text annotation Not in a motif group | ||
| HL_5KCS_088 | 1/1a/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_5KCS_089 | 1/1a/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_5KCS_090 | 1/1a/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_5KCS_091 | 1/1a/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_5KCS_092 | 1/1a/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_5KCS_093 | 1/1a/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5KCS_094 | 1/1a/1134:1140 | No text annotation Not in a motif group | ||
| HL_5KCS_095 | 1/1a/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_5KCS_096 | 1/1a/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_5KCS_097 | 1/1a/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_5KCS_098 | 1/1a/1355:1367 | No text annotation Not in a motif group | ||
| HL_5KCS_099 | 1/1a/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_5KCS_100 | 1/1a/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_5KCS_102 | 1/1x/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_5KCS_103 | 1/1x/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5KCS_024 | No text annotation | ||
| HL_5KCS_101 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5KCS_001 | 1/1A/24:30, 1/1A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_4WF9_001 IL_66414.6 | |
| IL_5KCS_002 | 1/1A/36:37, 1/1A/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_5KCS_003 | 1/1A/42:44, 1/1A/434:437 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_003 IL_65006.1 | |
| IL_5KCS_004 | 1/1A/81:85, 1/1A/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_5KCS_005 | 1/1A/183:184, 1/1A/212:214 | No text annotation Not in a motif group | ||
| IL_5KCS_006 | 1/1A/188:194, 1/1A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.7 | |
| IL_5KCS_007 | 1/1A/239:245, 1/1A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_5KCS_008 | 1/1A/269:271, 1/1A/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_5KCS_009 | 1/1A/274:282, 1/1A/358:363 | No text annotation Not in a motif group | ||
| IL_5KCS_010 | 1/1A/293:295, 1/1A/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_5KCS_011 | 1/1A/481:484, 1/1A/496:509 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.6 | |
| IL_5KCS_012 | 1/1A/536:539, 1/1A/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_5KCS_013 | 1/1A/564:566, 1/1A/575:577 | No text annotation Not in a motif group | homologous IL_5J7L_257 IL_95997.1 | |
| IL_5KCS_014 | 1/1A/606:610, 1/1A/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_5KCS_015 | 1/1A/672:674, 1/1A/806:808 | No text annotation Not in a motif group | geometric IL_5J7L_259 IL_95997.1 | |
| IL_5KCS_016 | 1/1A/674:678, 1/1A/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_5J7L_260 IL_17470.6 | |
| IL_5KCS_017 | 1/1A/697:698, 1/1A/763:765 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.2 | |
| IL_5KCS_018 | 1/1A/702:703, 1/1A/728:730 | Single bulged G Not in a motif group | homologous IL_5J7L_262 IL_00225.2 | |
| IL_5KCS_019 | 1/1A/703:707, 1/1A/724:728 | Triple sheared Not in a motif group | geometric IL_5J7L_263 IL_56467.8 | |
| IL_5KCS_020 | 1/1A/738:740, 1/1A/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_5KCS_021 | 1/1A/775:777, 1/1A/787:791 | Multiple bulged bases Not in a motif group | homologous IL_7A0S_021 IL_90991.6 | |
| IL_5KCS_022 | 1/1A/844:848, 1/1A/930:934 | No text annotation Not in a motif group | ||
| IL_5KCS_023 | 1/1A/850:851, 1/1A/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_5KCS_024 | 1/1A/856:862, 1/1A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_5KCS_025 | 1/1A/862:863, 1/1A/913:915 | Single bulged G Not in a motif group | homologous IL_5J7L_271 IL_00225.2 | |
| IL_5KCS_026 | 1/1A/864:868, 1/1A/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_5KCS_027 | 1/1A/870:872, 1/1A/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_034 IL_52767.2 | |
| IL_5KCS_028 | 1/1A/875:879, 1/1A/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_5KCS_029 | 1/1A/880:882, 1/1A/894:897 | No text annotation Not in a motif group | ||
| IL_5KCS_030 | 1/1A/994:996, 1/1A/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_5KCS_031 | 1/1A/997:1002, 1/1A/1153:1158 | UAA/GAN with extra cWW Not in a motif group | geometric IL_4WF9_104 IL_49767.5 | |
| IL_5KCS_032 | 1/1A/1004:1011, 1/1A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_5KCS_033 | 1/1A/1011:1013, 1/1A/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_5KCS_034 | 1/1A/1018:1024, 1/1A/1140:1144 | No text annotation Not in a motif group | homologous IL_5J7L_280 IL_57188.3 | |
| IL_5KCS_035 | 1/1A/1024:1030, 1/1A/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_5KCS_036 | 1/1A/1031:1034, 1/1A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_5KCS_037 | 1/1A/1038:1042, 1/1A/1113:1117 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_5KCS_038 | 1/1A/1043:1051, 1/1A/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.4 | |
| IL_5KCS_039 | 1/1A/1055:1090, 1/1A/1101:1104 | No text annotation Not in a motif group | ||
| IL_5KCS_040 | 1/1A/1196:1199, 1/1A/1246:1250 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
| IL_5KCS_041 | 1/1A/1202:1206, 1/1A/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_5KCS_042 | 1/1A/1208:1215, 1/1A/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_5KCS_043 | 1/1A/1262:1269, 1/1A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_5KCS_044 | 1/1A/1310:1313, 1/1A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_5KCS_045 | 1/1A/1319:1323, 1/1A/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_5KCS_046 | 1/1A/1351:1355, 1/1A/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7A0S_048 IL_89002.2 | |
| IL_5KCS_047 | 1/1A/1357:1361, 1/1A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_5KCS_048 | 1/1A/1415:1416, 1/1A/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_5KCS_049 | 1/1A/1417:1421, 1/1A/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_5KCS_050 | 1/1A/1432:1435, 1/1A/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_5KCS_051 | 1/1A/1437:1440, 1/1A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
| IL_5KCS_052 | 1/1A/1468:1471, 1/1A/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_5KCS_053 | 1/1A/1474:1479, 1/1A/1512:1517 | No text annotation Not in a motif group | ||
| IL_5KCS_054 | 1/1A/1481:1482, 1/1A/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.4 | |
| IL_5KCS_055 | 1/1A/1489:1491, 1/1A/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_5KCS_056 | 1/1A/1526:1529, 1/1A/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_5KCS_057 | 1/1A/1651:1656, 1/1A/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_5KCS_058 | 1/1A/1663:1665, 1/1A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_5KCS_059 | 1/1A/1666:1669, 1/1A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_5KCS_060 | 1/1A/1669:1674, 1/1A/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
| IL_5KCS_061 | 1/1A/1686:1691, 1/1A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_5KCS_062 | 1/1A/1712:1718, 1/1A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_5KCS_063 | 1/1A/1720:1724, 1/1A/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
| IL_5KCS_064 | 1/1A/1770:1771, 1/1A/1980:1982 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
| IL_5KCS_065 | 1/1A/1798:1804, 1/1A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_5KCS_066 | 1/1A/1837:1840, 1/1A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_5KCS_067 | 1/1A/1841:1842, 1/1A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_5KCS_068 | 1/1A/1846:1849, 1/1A/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_5KCS_069 | 1/1A/1864:1867, 1/1A/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_5KCS_070 | 1/1A/1933:1934, 1/1A/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_59677.2 | |
| IL_5KCS_071 | 1/1A/1934:1945, 1/1A/1961:1964 | No text annotation Not in a motif group | geometric IL_7A0S_072 IL_81589.2 | |
| IL_5KCS_072 | 1/1A/2050:2052, 1/1A/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_5KCS_073 | 1/1A/2054:2056, 1/1A/2612:2615 | No text annotation Not in a motif group | ||
| IL_5KCS_074 | 1/1A/2064:2066, 1/1A/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_5KCS_075 | 1/1A/2067:2070, 1/1A/2441:2443 | No text annotation Not in a motif group | homologous IL_5J7L_323 NA | |
| IL_5KCS_076 | 1/1A/2070:2071, 1/1A/2438:2441 | Minor groove platform Not in a motif group | geometric IL_4V9F_075 IL_42622.2 | |
| IL_5KCS_077 | 1/1A/2081:2083, 1/1A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_5KCS_078 | 1/1A/2085:2087, 1/1A/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_5KCS_079 | 1/1A/2101:2105, 1/1A/2184:2188 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_5KCS_080 | 1/1A/2129:2137, 1/1A/2154:2159 | No text annotation Not in a motif group | ||
| IL_5KCS_081 | 1/1A/2202:2204, 1/1A/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_5KCS_082 | 1/1A/2350:2353, 1/1A/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_5KCS_083 | 1/1A/2401:2403, 1/1A/2414:2415 | No text annotation Not in a motif group | ||
| IL_5KCS_084 | 1/1A/2456:2459, 1/1A/2493:2495 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_5KCS_085 | 1/1A/2459:2461, 1/1A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_5KCS_086 | 1/1A/2466:2470, 1/1A/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_5KCS_087 | 1/1A/2507:2509, 1/1A/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_5KCS_088 | 1/1A/2510:2512, 1/1A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7A0S_089 IL_90933.2 | |
| IL_5KCS_089 | 1/1A/2512:2513, 1/1A/2571:2574 | No text annotation Not in a motif group | homologous IL_4WF9_096 IL_71530.2 | |
| IL_5KCS_090 | 1/1A/2522:2523, 1/1A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_5KCS_091 | 1/1A/2588:2591, 1/1A/2603:2606 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
| IL_5KCS_092 | 1/1A/2591:2592, 1/1A/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_5KCS_093 | 1/1A/2635:2640, 1/1A/2774:2783 | No text annotation Not in a motif group | ||
| IL_5KCS_094 | 1/1A/2652:2658, 1/1A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7A0S_094 IL_16458.1 | |
| IL_5KCS_095 | 1/1A/2680:2684, 1/1A/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_5KCS_096 | 1/1A/2687:2691, 1/1A/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_5KCS_097 | 1/1A/2695:2696, 1/1A/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_5KCS_098 | 1/1A/2737:2742, 1/1A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_5KCS_099 | 1/1A/2806:2811, 1/1A/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_49460.2 | |
| IL_5KCS_100 | 1/1A/2838:2839, 1/1A/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_4WF9_106 IL_16396.2 | |
| IL_5KCS_101 | 1/1A/2843:2846, 1/1A/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_5KCS_102 | 1/1A/2847:2852, 1/1A/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 | |
| IL_5KCS_103 | 1/1B/17:18, 1/1B/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.2 | |
| IL_5KCS_104 | 1/1B/23:28, 1/1B/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_5KCS_105 | 1/1B/30:32, 1/1B/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_5KCS_106 | 1/1B/71:79, 1/1B/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
| IL_5KCS_107 | 1/1a/30:32, 1/1a/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_5KCS_108 | 1/1a/44:45, 1/1a/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_5KCS_109 | 1/1a/47:52, 1/1a/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_5KCS_110 | 1/1a/54:56, 1/1a/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_5KCS_111 | 1/1a/63:66, 1/1a/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_5KCS_112 | 1/1a/67:69, 1/1a/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_5KCS_113 | 1/1a/70:73, 1/1a/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_5KCS_114 | 1/1a/75:76, 1/1a/93:95 | Major groove intercalation Not in a motif group | geometric IL_5J7L_352 IL_16396.2 | |
| IL_5KCS_115 | 1/1a/128:131, 1/1a/231:233 | No text annotation Not in a motif group | ||
| IL_5KCS_116 | 1/1a/132:136, 1/1a/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
| IL_5KCS_117 | 1/1a/144:146, 1/1a/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_5KCS_118 | 1/1a/147:153, 1/1a/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_5KCS_119 | 1/1a/203:206, 1/1a/213:214 | Minor groove platform Not in a motif group | geometric IL_3MXH_005 IL_15052.1 | |
| IL_5KCS_120 | 1/1a/242:247, 1/1a/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_5KCS_121 | 1/1a/248:253, 1/1a/273:276 | No text annotation Not in a motif group | ||
| IL_5KCS_122 | 1/1a/292:293, 1/1a/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5KCS_123 | 1/1a/367:369, 1/1a/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_5KCS_124 | 1/1a/371:375, 1/1a/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_5KCS_125 | 1/1a/375:376, 1/1a/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_5KCS_126 | 1/1a/409:416, 1/1a/427:433 | No text annotation Not in a motif group | homologous IL_5J7L_020 IL_28026.1 | |
| IL_5KCS_127 | 1/1a/440:442, 1/1a/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_5KCS_128 | 1/1a/446:450, 1/1a/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_88269.3 | |
| IL_5KCS_129 | 1/1a/450:455, 1/1a/477:483 | No text annotation Not in a motif group | geometric IL_5J7L_023 IL_70801.1 | |
| IL_5KCS_130 | 1/1a/504:511, 1/1a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_5KCS_131 | 1/1a/515:521, 1/1a/528:536 | No text annotation Not in a motif group | homologous IL_5J7L_025 NA | |
| IL_5KCS_132 | 1/1a/569:575, 1/1a/880:881 | No text annotation Not in a motif group | ||
| IL_5KCS_133 | 1/1a/580:584, 1/1a/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_5KCS_134 | 1/1a/594:596, 1/1a/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_5KCS_135 | 1/1a/597:598, 1/1a/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_5KCS_136 | 1/1a/605:612, 1/1a/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_5KCS_137 | 1/1a/654:655, 1/1a/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_5KCS_138 | 1/1a/658:659, 1/1a/746:748 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_5KCS_139 | 1/1a/662:666, 1/1a/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_5KCS_140 | 1/1a/683:688, 1/1a/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5KCS_141 | 1/1a/774:778, 1/1a/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_5KCS_142 | 1/1a/779:783, 1/1a/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_5KCS_143 | 1/1a/887:894, 1/1a/905:910 | No text annotation Not in a motif group | ||
| IL_5KCS_144 | 1/1a/922:923, 1/1a/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_5KCS_145 | 1/1a/923:927, 1/1a/1390:1393 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_7A0S_040 IL_30621.2 | |
| IL_5KCS_146 | 1/1a/933:936, 1/1a/1379:1384 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_93211.1 | |
| IL_5KCS_147 | 1/1a/953:954, 1/1a/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_5KCS_148 | 1/1a/993:997, 1/1a/1044:1045 | Minor groove platform Not in a motif group | homologous IL_5J7L_043 IL_47078.1 | |
| IL_5KCS_149 | 1/1a/998:999, 1/1a/1041:1043 | No text annotation Not in a motif group | ||
| IL_5KCS_150 | 1/1a/1003:1006, 1/1a/1023:1037 | No text annotation Not in a motif group | ||
| IL_5KCS_151 | 1/1a/1048:1050, 1/1a/1208:1209 | Single bulged U Not in a motif group | geometric IL_5J7L_046 IL_83039.13 | |
| IL_5KCS_152 | 1/1a/1050:1056, 1/1a/1204:1208 | No text annotation Not in a motif group | homologous IL_5J7L_047 NA | |
| IL_5KCS_153 | 1/1a/1057:1058, 1/1a/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_5KCS_154 | 1/1a/1060:1061, 1/1a/1195:1197 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_5KCS_155 | 1/1a/1061:1063, 1/1a/1193:1195 | No text annotation Not in a motif group | homologous IL_5J7L_050 IL_95997.1 | |
| IL_5KCS_156 | 1/1a/1123:1128, 1/1a/1144:1150 | No text annotation Not in a motif group | ||
| IL_5KCS_157 | 1/1a/1129:1132, 1/1a/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_5KCS_158 | 1/1a/1158:1161, 1/1a/1175:1181 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
| IL_5KCS_159 | 1/1a/1246:1253, 1/1a/1284:1291 | No text annotation Not in a motif group | ||
| IL_5KCS_160 | 1/1a/1255:1258, 1/1a/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_5KCS_161 | 1/1a/1259:1263, 1/1a/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_5KCS_162 | 1/1a/1303:1309, 1/1a/1328:1334 | No text annotation Not in a motif group | ||
| IL_5KCS_163 | 1/1a/1399:1401, 1/1a/1501:1504 | No text annotation Not in a motif group | ||
| IL_5KCS_164 | 1/1a/1401:1404, 1/1a/1497:1501 | No text annotation Not in a motif group | homologous IL_5J7L_059 NA | |
| IL_5KCS_165 | 1/1a/1405:1409, 1/1a/1491:1496 | No text annotation Not in a motif group | homologous IL_4LFB_058 NA | |
| IL_5KCS_166 | 1/1a/1412:1414, 1/1a/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_5KCS_167 | 1/1a/1416:1419, 1/1a/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_5KCS_168 | 1/1a/1430:1435, 1/1a/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_5KCS_169 | 1/1a/1440:1442, 1/1a/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_42622.2 | |
| IL_5KCS_170 | 1/1a/1445:1448, 1/1a/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5KCS_001 | 1/1A/30:31, 1/1A/474:481, 1/1A/509:510 | No text annotation Not in a motif group | ||
| J3_5KCS_002 | 1/1A/55:57, 1/1A/70:76, 1/1A/110:115 | No text annotation Not in a motif group | ||
| J3_5KCS_003 | 1/1A/683:689, 1/1A/773:775, 1/1A/791:794 | No text annotation Not in a motif group | ||
| J3_5KCS_004 | 1/1A/698:700, 1/1A/732:736, 1/1A/760:763 | No text annotation Not in a motif group | ||
| J3_5KCS_005 | 1/1A/1298:1303, 1/1A/1625:1627, 1/1A/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_5KCS_006 | 1/1A/1306:1309, 1/1A/1605:1611, 1/1A/1620:1622 | No text annotation Not in a motif group | homologous J3_5J7L_042 NA | |
| J3_5KCS_007 | 1/1A/1344:1349, 1/1A/1382:1386, 1/1A/1401:1403 | No text annotation Not in a motif group | ||
| J3_5KCS_008 | 1/1A/2091:2093, 1/1A/2196:2200, 1/1A/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_5KCS_009 | 1/1A/2295:2299, 1/1A/2317:2323, 1/1A/2332:2337 | No text annotation Not in a motif group | ||
| J3_5KCS_010 | 1/1A/2517:2520, 1/1A/2545:2547, 1/1A/2561:2567 | No text annotation Not in a motif group | ||
| J3_5KCS_011 | 1/1A/2789:2792, 1/1A/2804:2806, 1/1A/2892:2894 | No text annotation Not in a motif group | ||
| J3_5KCS_012 | 1/1A/2812:2815, 1/1A/2831:2836, 1/1A/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_5KCS_013 | 1/1B/10:16, 1/1B/68:70, 1/1B/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA | |
| J3_5KCS_014 | 1/1a/46:47, 1/1a/361:367, 1/1a/393:395 | No text annotation Not in a motif group | ||
| J3_5KCS_015 | 1/1a/586:588, 1/1a/651:654, 1/1a/754:755 | No text annotation Not in a motif group | ||
| J3_5KCS_016 | 1/1a/826:829, 1/1a/857:861, 1/1a/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_5KCS_017 | 1/1a/936:939, 1/1a/1344:1350, 1/1a/1372:1379 | No text annotation Not in a motif group | ||
| J3_5KCS_018 | 1/1a/943:946, 1/1a/1235:1237, 1/1a/1337:1340 | No text annotation Not in a motif group | ||
| J3_5KCS_019 | 1/1a/954:962, 1/1a/973:984, 1/1a/1221:1226 | No text annotation Not in a motif group | ||
| J3_5KCS_020 | 1/1a/990:993, 1/1a/1045:1047, 1/1a/1210:1215 | No text annotation Not in a motif group | ||
| J3_5KCS_021 | 1/1a/1063:1068, 1/1a/1107:1113, 1/1a/1187:1193 | No text annotation Not in a motif group | ||
| J3_5KCS_022 | 1/1a/1073:1074, 1/1a/1083:1087, 1/1a/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_5KCS_023 | 1/1a/1116:1118, 1/1a/1155:1158, 1/1a/1181:1184 | No text annotation Not in a motif group | ||
| J3_5KCS_024 | 1/1a/1237:1241, 1/1a/1296:1303, 1/1a/1334:1337 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: