3JAH Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3JAH_001 | 1/2/12:23 | No text annotation Not in a motif group | ||
| HL_3JAH_002 | 1/2/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_3JAH_003 | 1/2/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_6PMO_005 HL_22280.1 | |
| HL_3JAH_004 | 1/3/12:23 | No text annotation Not in a motif group | homologous HL_1SER_001 NA | |
| HL_3JAH_005 | 1/3/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_3JAH_006 | 1/3/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_6PMO_005 HL_22280.1 | |
| HL_3JAH_007 | 1/5/37:44 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.2 | |
| HL_3JAH_008 | 1/5/68:73 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_3JAH_009 | 1/5/89:95 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_3JAH_010 | 1/5/131:137 | No text annotation Not in a motif group | ||
| HL_3JAH_011 | 1/5/204:211 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_3JAH_012 | 1/5/222:226 | No text annotation Not in a motif group | homologous HL_8C3A_006 HL_98984.2 | |
| HL_3JAH_013 | 1/5/230:238 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_3JAH_014 | 1/5/289:298 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_3JAH_015 | 1/5/314:323 | No text annotation Not in a motif group | geometric HL_4QLM_002 HL_12078.2 | |
| HL_3JAH_016 | 1/5/368:373 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_3JAH_017 | 1/5/393:398 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_3JAH_018 | 1/5/1178:1183 | GNRA Not in a motif group | geometric HL_4W90_003 HL_42097.1 | |
| HL_3JAH_019 | 1/5/1252:1258 | No text annotation Not in a motif group | geometric HL_4LFB_012 HL_43656.2 | |
| HL_3JAH_020 | 1/5/1317:1326 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_89380.2 | |
| HL_3JAH_021 | 1/5/1364:1373 | No text annotation Not in a motif group | ||
| HL_3JAH_022 | 1/5/1389:1394 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_3JAH_023 | 1/5/1406:1411 | No text annotation Not in a motif group | ||
| HL_3JAH_024 | 1/5/1436:1448 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_3JAH_025 | 1/5/1479:1486 | No text annotation Not in a motif group | ||
| HL_3JAH_026 | 1/5/1561:1566 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_3JAH_027 | 1/5/1593:1602 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.6 | |
| HL_3JAH_028 | 1/5/1627:1635 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_3JAH_029 | 1/5/1675:1680 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_94803.1 | |
| HL_3JAH_030 | 1/5/1763:1769 | GNRA Not in a motif group | homologous HL_5TBW_023 HL_42097.1 | |
| HL_3JAH_031 | 1/5/1814:1823 | No text annotation Not in a motif group | ||
| HL_3JAH_032 | 1/5/1864:1870 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_3JAH_033 | 1/5/1886:1893 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_3JAH_034 | 1/5/1978:1988 | No text annotation Not in a motif group | homologous HL_5TBW_027 HL_07145.1 | |
| HL_3JAH_035 | 1/5/2006:2013 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_3JAH_036 | 1/5/2130:2244 | No text annotation Not in a motif group | ||
| HL_3JAH_037 | 1/5/2317:2322 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_42097.1 | |
| HL_3JAH_038 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_89380.2 | |
| HL_3JAH_039 | 1/5/2420:2426 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_3JAH_040 | 1/5/2458:2463 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_76539.2 | |
| HL_3JAH_041 | 1/5/2487:2491 | No text annotation Not in a motif group | ||
| HL_3JAH_042 | 1/5/2523:2532 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_3JAH_043 | 1/5/2561:2566 | GNRA Not in a motif group | geometric HL_4QK9_002 HL_42097.1 | |
| HL_3JAH_044 | 1/5/2578:2583 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.1 | |
| HL_3JAH_045 | 1/5/2623:2632 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_3JAH_046 | 1/5/2664:2670 | No text annotation Not in a motif group | homologous HL_8C3A_038 HL_86373.2 | |
| HL_3JAH_047 | 1/5/2705:2710 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_3JAH_048 | 1/5/2738:2742 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_3JAH_049 | 1/5/2792:2799 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_3JAH_050 | 1/5/2810:2816 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_3JAH_051 | 1/5/2872:2877 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_3JAH_052 | 1/5/3614:3618 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_3JAH_053 | 1/5/3639:3649 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.5 | |
| HL_3JAH_054 | 1/5/3668:3674 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_3JAH_055 | 1/5/3723:3729 | No text annotation Not in a motif group | ||
| HL_3JAH_056 | 1/5/3757:3767 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_3JAH_057 | 1/5/3796:3804 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_3JAH_058 | 1/5/3873:3882 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.6 | |
| HL_3JAH_059 | 1/5/3948:4065 | No text annotation Not in a motif group | ||
| HL_3JAH_060 | 1/5/4102:4107 | UNCG Not in a motif group | geometric HL_5J7L_171 HL_03562.2 | |
| HL_3JAH_061 | 1/5/4139:4145 | No text annotation Not in a motif group | ||
| HL_3JAH_062 | 1/5/4193:4201 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_3JAH_063 | 1/5/4210:4222 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_3JAH_064 | 1/5/4250:4258 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_3JAH_065 | 1/5/4270:4277 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_3JAH_066 | 1/5/4301:4309 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_3JAH_067 | 1/5/4321:4326 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_42097.1 | |
| HL_3JAH_068 | 1/5/4352:4362 | No text annotation Not in a motif group | geometric HL_4V83_139 HL_53597.2 | |
| HL_3JAH_069 | 1/5/4417:4425 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_3JAH_070 | 1/5/4473:4481 | No text annotation Not in a motif group | geometric HL_4WF9_053 HL_09136.1 | |
| HL_3JAH_071 | 1/5/4497:4503 | No text annotation Not in a motif group | homologous HL_8C3A_064 HL_43656.2 | |
| HL_3JAH_072 | 1/5/4540:4545 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_42097.1 | |
| HL_3JAH_073 | 1/5/4603:4608 | GNRA Not in a motif group | geometric HL_4V9F_066 HL_42097.1 | |
| HL_3JAH_074 | 1/5/4646:4651 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_3JAH_075 | 1/5/4688:4702 | No text annotation Not in a motif group | ||
| HL_3JAH_076 | 1/5/4907:4914 | No text annotation Not in a motif group | ||
| HL_3JAH_077 | 1/5/4975:4983 | No text annotation Not in a motif group | geometric HL_5J7L_201 HL_27930.1 | |
| HL_3JAH_078 | 1/5/5021:5028 | No text annotation Not in a motif group | geometric HL_6VMY_004 HL_91058.1 | |
| HL_3JAH_079 | 1/7/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_3JAH_080 | 1/7/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_3JAH_081 | 1/8/47:56 | No text annotation Not in a motif group | geometric HL_4V9F_001 HL_99167.1 | |
| HL_3JAH_083 | 1/8/107:112 | No text annotation Not in a motif group | ||
| HL_3JAH_084 | 1/8/121:129 | No text annotation Not in a motif group | ||
| HL_3JAH_085 | 1/9/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_3JAH_086 | 1/9/69:80 | No text annotation Not in a motif group | ||
| HL_3JAH_087 | 1/9/156:162 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_3JAH_088 | 1/9/197:202 | GNRA Not in a motif group | geometric HL_6CZR_078 HL_42097.1 | |
| HL_3JAH_089 | 1/9/288:295 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_3JAH_090 | 1/9/322:329 | No text annotation Not in a motif group | ||
| HL_3JAH_091 | 1/9/377:387 | No text annotation Not in a motif group | ||
| HL_3JAH_092 | 1/9/416:421 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_3JAH_093 | 1/9/441:452 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_3JAH_094 | 1/9/462:467 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_3JAH_095 | 1/9/498:504 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_3JAH_096 | 1/9/539:544 | GNRA Not in a motif group | geometric HL_5J7L_007 HL_42097.1 | |
| HL_3JAH_097 | 1/9/569:581 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_3JAH_098 | 1/9/618:623 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_3JAH_099 | 1/9/697:733 | No text annotation Not in a motif group | ||
| HL_3JAH_101 | 1/9/820:828 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_3JAH_102 | 1/9/833:841 | No text annotation Not in a motif group | ||
| HL_3JAH_103 | 1/9/885:901 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_3JAH_104 | 1/9/957:966 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_3JAH_105 | 1/9/994:999 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_3JAH_106 | 1/9/1054:1064 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_3JAH_107 | 1/9/1111:1122 | No text annotation Not in a motif group | ||
| HL_3JAH_108 | 1/9/1141:1146 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_3JAH_109 | 1/9/1178:1183 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_3JAH_110 | 1/9/1245:1254 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_3JAH_111 | 1/9/1295:1304 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_3JAH_112 | 1/9/1353:1358 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_3JAH_113 | 1/9/1366:1373 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_3JAH_114 | 1/9/1421:1426 | GNRA Not in a motif group | geometric HL_5FQ5_003 HL_42097.1 | |
| HL_3JAH_115 | 1/9/1460:1466 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_3JAH_116 | 1/9/1565:1570 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_3JAH_117 | 1/9/1614:1625 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_3JAH_118 | 1/9/1658:1666 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_3JAH_119 | 1/9/1760:1772 | No text annotation Not in a motif group | ||
| HL_3JAH_120 | 1/9/1847:1852 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3JAH_082 | No text annotation | ||
| HL_3JAH_100 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3JAH_001 | 1/2/2:4, 1/2/69:71 | No text annotation Not in a motif group | homologous IL_5EL4_357 NA | |
| IL_3JAH_002 | 1/5/6:7, 1/8/149:151 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_3JAH_003 | 1/5/12:14, 1/8/143:144 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_3JAH_004 | 1/5/16:18, 1/8/139:141 | No text annotation Not in a motif group | geometric IL_6IA2_005 IL_95997.1 | |
| IL_3JAH_005 | 1/5/26:27, 1/5/55:57 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_76488.2 | |
| IL_3JAH_006 | 1/5/30:37, 1/5/44:52 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_35728.2 | |
| IL_3JAH_007 | 1/5/81:88, 1/5/96:102 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_3JAH_008 | 1/5/118:121, 1/5/152:153 | Multiple bulged bases Not in a motif group | geometric IL_5XWP_001 IL_44546.1 | |
| IL_3JAH_009 | 1/5/121:122, 1/5/147:152 | No text annotation Not in a motif group | homologous IL_5TBW_007 IL_19724.2 | |
| IL_3JAH_010 | 1/5/125:126, 1/5/142:144 | No text annotation Not in a motif group | ||
| IL_3JAH_011 | 1/5/168:173, 1/5/263:267 | No text annotation Not in a motif group | ||
| IL_3JAH_012 | 1/5/180:182, 1/5/255:256 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 | |
| IL_3JAH_013 | 1/5/184:189, 1/5/252:253 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1NBS_009 IL_69996.1 | |
| IL_3JAH_014 | 1/5/195:196, 1/5/244:246 | Single bulged C Not in a motif group | geometric IL_4WF9_035 IL_61258.12 | |
| IL_3JAH_015 | 1/5/199:201, 1/5/214:215 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_3JAH_016 | 1/5/285:286, 1/5/300:302 | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_76488.2 | |
| IL_3JAH_017 | 1/5/286:288, 1/5/299:300 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_3JAH_018 | 1/5/339:342, 1/8/32:33 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_005 IL_88739.1 | |
| IL_3JAH_019 | 1/5/348:350, 1/8/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_3JAH_020 | 1/5/387:390, 1/5/401:414 | No text annotation Not in a motif group | geometric IL_5TBW_014 IL_60992.6 | |
| IL_3JAH_021 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_3JAH_022 | 1/5/443:446, 1/5/1300:1304 | No text annotation Not in a motif group | ||
| IL_3JAH_023 | 1/5/459:460, 1/5/695:697 | No text annotation Not in a motif group | ||
| IL_3JAH_024 | 1/5/462:464, 1/5/691:693 | AA cWW Not in a motif group | geometric IL_5ED1_002 IL_95997.1 | |
| IL_3JAH_025 | 1/5/465:466, 1/5/688:690 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_3JAH_026 | 1/5/466:472, 1/5/682:688 | No text annotation Not in a motif group | ||
| IL_3JAH_027 | 1/5/482:486, 1/5/670:672 | No text annotation Not in a motif group | ||
| IL_3JAH_028 | 1/5/488:490, 1/5/664:668 | No text annotation Not in a motif group | ||
| IL_3JAH_029 | 1/5/490:493, 1/5/661:664 | No text annotation Not in a motif group | ||
| IL_3JAH_030 | 1/5/495:496, 1/5/657:659 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_3JAH_031 | 1/5/497:499, 1/5/655:656 | No text annotation Not in a motif group | ||
| IL_3JAH_032 | 1/5/500:506, 1/5/652:654 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_3JAH_033 | 1/5/508:510, 1/5/649:650 | Single bulged A Not in a motif group | geometric IL_1U63_004 IL_37497.2 | |
| IL_3JAH_034 | 1/5/511:515, 1/5/646:648 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_82068.2 | |
| IL_3JAH_035 | 1/5/708:709, 1/5/1287:1289 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_00225.2 | |
| IL_3JAH_036 | 1/5/722:724, 1/5/942:946 | No text annotation Not in a motif group | ||
| IL_3JAH_037 | 1/5/726:731, 1/5/938:940 | No text annotation Not in a motif group | ||
| IL_3JAH_038 | 1/5/731:735, 1/5/928:938 | No text annotation Not in a motif group | ||
| IL_3JAH_039 | 1/5/735:737, 1/5/927:928 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_3JAH_040 | 1/5/740:742, 1/5/922:924 | No text annotation Not in a motif group | geometric IL_4P43_004 IL_95997.1 | |
| IL_3JAH_041 | 1/5/745:753, 1/5/910:919 | No text annotation Not in a motif group | ||
| IL_3JAH_042 | 1/5/989:992, 1/5/1051:1064 | No text annotation Not in a motif group | ||
| IL_3JAH_043 | 1/5/1074:1076, 1/5/1235:1236 | No text annotation Not in a motif group | ||
| IL_3JAH_044 | 1/5/1076:1077, 1/5/1233:1235 | No text annotation Not in a motif group | ||
| IL_3JAH_045 | 1/5/1077:1079, 1/5/1221:1233 | No text annotation Not in a motif group | ||
| IL_3JAH_046 | 1/5/1081:1082, 1/5/1217:1219 | Minor groove platform Not in a motif group | geometric IL_6DLR_003 IL_42622.2 | |
| IL_3JAH_047 | 1/5/1082:1085, 1/5/1212:1217 | No text annotation Not in a motif group | ||
| IL_3JAH_048 | 1/5/1086:1087, 1/5/1209:1211 | Single bulged C Not in a motif group | geometric IL_3W3S_001 IL_61258.12 | |
| IL_3JAH_049 | 1/5/1097:1098, 1/5/1197:1199 | Single stack bend Not in a motif group | geometric IL_5J7L_249 IL_76488.2 | |
| IL_3JAH_050 | 1/5/1173:1175, 1/5/1186:1188 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_52767.2 | |
| IL_3JAH_051 | 1/5/1357:1360, 1/5/1378:1382 | No text annotation Not in a motif group | ||
| IL_3JAH_052 | 1/5/1360:1361, 1/5/1376:1378 | No text annotation Not in a motif group | ||
| IL_3JAH_053 | 1/5/1425:1429, 1/5/1455:1460 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_3JAH_054 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared Not in a motif group | geometric IL_4WF9_087 IL_09705.9 | |
| IL_3JAH_055 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.2 | |
| IL_3JAH_056 | 1/5/1474:1476, 1/5/1489:1490 | Single base bend Not in a motif group | geometric IL_5IBB_340 IL_92001.1 | |
| IL_3JAH_057 | 1/5/1520:1522, 1/5/1655:1657 | No text annotation Not in a motif group | homologous IL_8C3A_029 IL_95997.1 | |
| IL_3JAH_058 | 1/5/1522:1526, 1/5/1648:1655 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
| IL_3JAH_059 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_3JAH_060 | 1/5/1551:1555, 1/5/1572:1576 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.8 | |
| IL_3JAH_061 | 1/5/1586:1589, 1/5/1605:1607 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_05564.2 | |
| IL_3JAH_062 | 1/5/1590:1592, 1/5/1603:1604 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_3JAH_063 | 1/5/1624:1626, 1/5/1636:1640 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_3JAH_064 | 1/5/1671:1674, 1/5/1681:1684 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.2 | |
| IL_3JAH_065 | 1/5/1686:1688, 1/5/1848:1851 | No text annotation Not in a motif group | ||
| IL_3JAH_066 | 1/5/1694:1725, 1/5/1837:1842 | No text annotation Not in a motif group | ||
| IL_3JAH_067 | 1/5/1732:1737, 1/5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_3JAH_068 | 1/5/1737:1738, 1/5/1790:1792 | No text annotation Not in a motif group | homologous IL_8C3A_042 IL_42622.2 | |
| IL_3JAH_069 | 1/5/1739:1744, 1/5/1786:1789 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_02509.1 | |
| IL_3JAH_070 | 1/5/1746:1749, 1/5/1781:1784 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_041 IL_30621.2 | |
| IL_3JAH_071 | 1/5/1749:1751, 1/5/1779:1781 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_3JAH_072 | 1/5/1753:1756, 1/5/1775:1777 | Intercalated cWW Not in a motif group | geometric IL_7A0S_044 IL_82842.2 | |
| IL_3JAH_073 | 1/5/1756:1758, 1/5/1774:1775 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_3JAH_074 | 1/5/1761:1763, 1/5/1769:1771 | No text annotation Not in a motif group | geometric IL_4WF9_083 IL_95997.1 | |
| IL_3JAH_075 | 1/5/1858:1860, 1/5/1874:1876 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_3JAH_076 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.2 | |
| IL_3JAH_077 | 1/5/1911:1918, 1/5/2064:2065 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
| IL_3JAH_078 | 1/5/1918:1920, 1/5/2063:2064 | No text annotation Not in a motif group | ||
| IL_3JAH_079 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation Not in a motif group | ||
| IL_3JAH_080 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_3JAH_081 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_3JAH_082 | 1/5/1946:1948, 1/5/2035:2036 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_3JAH_083 | 1/5/1957:1965, 1/5/2022:2026 | No text annotation Not in a motif group | ||
| IL_3JAH_084 | 1/5/1973:1977, 1/5/1989:1993 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_3JAH_085 | 1/5/2001:2005, 1/5/2014:2016 | No text annotation Not in a motif group | homologous IL_8C3A_059 IL_05564.2 | |
| IL_3JAH_086 | 1/5/2083:2085, 1/5/2272:2273 | Single bulged C Not in a motif group | geometric IL_3DIL_001 IL_61258.12 | |
| IL_3JAH_087 | 1/5/2290:2292, 1/5/2342:2345 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_3JAH_088 | 1/5/2299:2301, 1/5/2334:2335 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_3JAH_089 | 1/5/2302:2309, 1/5/2329:2333 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_3JAH_090 | 1/5/2312:2314, 1/5/2325:2326 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_3JAH_091 | 1/5/2358:2364, 1/5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_3JAH_092 | 1/5/2415:2419, 1/5/2427:2429 | C-loop Not in a motif group | geometric IL_7A0S_047 IL_37712.2 | |
| IL_3JAH_093 | 1/5/2446:2450, 1/5/2509:2514 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_3JAH_094 | 1/5/2477:2479, 1/5/2499:2500 | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_76488.2 | |
| IL_3JAH_095 | 1/5/2542:2547, 1/5/2772:2774 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_82068.2 | |
| IL_3JAH_096 | 1/5/2589:2593, 1/5/2752:2756 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.8 | |
| IL_3JAH_097 | 1/5/2613:2614, 1/5/2724:2726 | Single bulged C Not in a motif group | homologous IL_5TBW_069 IL_61258.12 | |
| IL_3JAH_098 | 1/5/2614:2615, 1/5/2722:2724 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_3JAH_099 | 1/5/2622:2623, 1/5/2632:2634 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_3JAH_100 | 1/5/2646:2648, 1/5/2685:2688 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.7 | |
| IL_3JAH_101 | 1/5/2651:2653, 1/5/2681:2682 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.2 | |
| IL_3JAH_102 | 1/5/2656:2662, 1/5/2672:2678 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_3JAH_103 | 1/5/2704:2705, 1/5/2710:2712 | No text annotation Not in a motif group | ||
| IL_3JAH_104 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
| IL_3JAH_105 | 1/5/2844:2846, 1/5/3842:3844 | Isolated tWW turn Not in a motif group | homologous IL_5TBW_075 IL_54997.7 | |
| IL_3JAH_106 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5TBW_076 IL_50694.2 | |
| IL_3JAH_107 | 1/5/2850:2855, 1/5/3837:3840 | Intercalated tWH Not in a motif group | geometric IL_5TBW_077 IL_82842.2 | |
| IL_3JAH_108 | 1/5/2867:2872, 1/5/2877:2883 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_3JAH_109 | 1/5/2889:2891, 1/5/3610:3612 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_3JAH_110 | 1/5/2896:2897, 1/5/3602:3605 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_3JAH_111 | 1/5/2901:2905, 1/5/3589:3598 | No text annotation Not in a motif group | ||
| IL_3JAH_112 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_37497.2 | |
| IL_3JAH_113 | 1/5/3660:3665, 1/5/3677:3684 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_3JAH_114 | 1/5/3700:3703, 1/5/3749:3750 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_3JAH_115 | 1/5/3704:3705, 1/5/3745:3748 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_3JAH_116 | 1/5/3708:3710, 1/5/3741:3742 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_3JAH_117 | 1/5/3710:3714, 1/5/3739:3741 | No text annotation Not in a motif group | homologous IL_8C3A_092 IL_65006.1 | |
| IL_3JAH_118 | 1/5/3715:3721, 1/5/3732:3738 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.6 | |
| IL_3JAH_119 | 1/5/3722:3723, 1/5/3729:3731 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_3JAH_120 | 1/5/3780:3781, 1/5/3811:3814 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_089 IL_59677.2 | |
| IL_3JAH_121 | 1/5/3781:3792, 1/5/3808:3811 | No text annotation Not in a motif group | geometric IL_5TBW_090 IL_81589.2 | |
| IL_3JAH_122 | 1/5/3895:3898, 1/5/4563:4565 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_3JAH_123 | 1/5/3900:3902, 1/5/4558:4561 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_3JAH_124 | 1/5/3913:3915, 1/5/4388:4389 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.13 | |
| IL_3JAH_125 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_3JAH_126 | 1/5/3927:3929, 1/5/4181:4184 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_3JAH_127 | 1/5/4082:4088, 1/5/4161:4164 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_3JAH_128 | 1/5/4095:4097, 1/5/4112:4113 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_42622.2 | |
| IL_3JAH_129 | 1/5/4191:4192, 1/5/4202:4204 | No text annotation Not in a motif group | homologous IL_8C3A_107 IL_69996.1 | |
| IL_3JAH_130 | 1/5/4243:4245, 1/5/4263:4267 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.7 | |
| IL_3JAH_131 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.2 | |
| IL_3JAH_132 | 1/5/4295:4298, 1/5/4312:4315 | No text annotation Not in a motif group | homologous IL_8C3A_109 IL_30621.2 | |
| IL_3JAH_133 | 1/5/4347:4350, 1/5/4364:4365 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_3JAH_134 | 1/5/4400:4401, 1/5/4442:4444 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.1 | |
| IL_3JAH_135 | 1/5/4401:4403, 1/5/4440:4442 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_3JAH_136 | 1/5/4403:4405, 1/5/4439:4440 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_3JAH_137 | 1/5/4405:4407, 1/5/4435:4439 | No text annotation Not in a motif group | homologous IL_5TBW_105 IL_92788.2 | |
| IL_3JAH_138 | 1/5/4412:4416, 1/5/4426:4430 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_3JAH_139 | 1/5/4453:4454, 1/5/4526:4528 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_3JAH_140 | 1/5/4456:4458, 1/5/4520:4524 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_108 IL_90933.2 | |
| IL_3JAH_141 | 1/5/4458:4459, 1/5/4517:4520 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_3JAH_142 | 1/5/4466:4468, 1/5/4489:4491 | No text annotation Not in a motif group | homologous IL_8C3A_118 IL_51629.2 | |
| IL_3JAH_143 | 1/5/4468:4470, 1/5/4485:4489 | No text annotation Not in a motif group | ||
| IL_3JAH_144 | 1/5/4472:4473, 1/5/4481:4483 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_3JAH_145 | 1/5/4495:4497, 1/5/4503:4505 | No text annotation Not in a motif group | homologous IL_5TBW_112 IL_95997.1 | |
| IL_3JAH_146 | 1/5/4537:4538, 1/5/4547:4549 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_37497.2 | |
| IL_3JAH_147 | 1/5/4580:4582, 1/5/4721:4723 | No text annotation Not in a motif group | ||
| IL_3JAH_148 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_3JAH_149 | 1/5/4590:4592, 1/5/4618:4620 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_3JAH_150 | 1/5/4596:4603, 1/5/4608:4614 | No text annotation Not in a motif group | homologous IL_8C3A_125 IL_04346.7 | |
| IL_3JAH_151 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation Not in a motif group | ||
| IL_3JAH_152 | 1/5/4632:4637, 1/5/4662:4666 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_3JAH_153 | 1/5/4638:4640, 1/5/4659:4661 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_012 IL_51629.2 | |
| IL_3JAH_154 | 1/5/4641:4642, 1/5/4655:4658 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_3JAH_155 | 1/5/4681:4685, 1/5/4705:4709 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.2 | |
| IL_3JAH_156 | 1/5/4739:4743, 1/5/4957:4960 | No text annotation Not in a motif group | ||
| IL_3JAH_157 | 1/5/4743:4746, 1/5/4954:4957 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
| IL_3JAH_158 | 1/5/4755:4766, 1/5/4868:4878 | No text annotation Not in a motif group | ||
| IL_3JAH_159 | 1/5/4768:4772, 1/5/4863:4866 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_7A0S_040 IL_30621.2 | |
| IL_3JAH_160 | 1/5/4885:4888, 1/5/4931:4934 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_30621.2 | |
| IL_3JAH_161 | 1/5/4891:4896, 1/5/4924:4928 | No text annotation Not in a motif group | ||
| IL_3JAH_162 | 1/5/4899:4901, 1/5/4920:4921 | No text annotation Not in a motif group | ||
| IL_3JAH_163 | 1/5/4966:4968, 1/5/5065:5066 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_3JAH_164 | 1/5/4972:4975, 1/5/4983:4986 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_3JAH_165 | 1/5/4992:4994, 1/5/5057:5059 | No text annotation Not in a motif group | geometric IL_3D0U_006 IL_95997.1 | |
| IL_3JAH_166 | 1/5/4996:4997, 1/5/5053:5055 | Single bulged C Not in a motif group | geometric IL_1KUQ_002 IL_61258.12 | |
| IL_3JAH_167 | 1/5/5000:5002, 1/5/5045:5050 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.2 | |
| IL_3JAH_168 | 1/5/5003:5009, 1/5/5039:5044 | No text annotation Not in a motif group | ||
| IL_3JAH_169 | 1/5/5012:5014, 1/5/5035:5036 | Single bulged C Not in a motif group | geometric IL_4WF9_035 IL_61258.12 | |
| IL_3JAH_170 | 1/5/5014:5017, 1/5/5032:5035 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_3JAH_171 | 1/7/15:16, 1/7/62:64 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_3JAH_172 | 1/7/21:27, 1/7/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_3JAH_173 | 1/7/28:29, 1/7/48:51 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.6 | |
| IL_3JAH_174 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_3JAH_175 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_3JAH_176 | 1/7/79:81, 1/7/95:97 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_95997.1 | |
| IL_3JAH_177 | 1/7/82:85, 1/7/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_3JAH_178 | 1/8/64:66, 1/8/92:95 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_3JAH_179 | 1/9/23:25, 1/9/649:651 | No text annotation Not in a motif group | geometric IL_3GM7_005 IL_95997.1 | |
| IL_3JAH_180 | 1/9/34:36, 1/9/519:521 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_3JAH_181 | 1/9/37:40, 1/9/514:518 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.9 | |
| IL_3JAH_182 | 1/9/41:47, 1/9/479:481 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_3JAH_183 | 1/9/49:51, 1/9/476:477 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_3JAH_184 | 1/9/57:62, 1/9/86:88 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_3JAH_185 | 1/9/63:68, 1/9/81:85 | No text annotation Not in a motif group | homologous IL_8C3A_398 IL_77691.1 | |
| IL_3JAH_186 | 1/9/108:110, 1/9/351:353 | UU cWW Not in a motif group | geometric IL_4TS2_004 IL_95997.1 | |
| IL_3JAH_187 | 1/9/110:112, 1/9/349:351 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_3JAH_188 | 1/9/112:115, 1/9/348:349 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_3JAH_189 | 1/9/116:121, 1/9/343:347 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_3JAH_190 | 1/9/145:151, 1/9/167:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_3JAH_191 | 1/9/152:154, 1/9/164:166 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_3JAH_192 | 1/9/188:192, 1/9/207:211 | Triple sheared Not in a motif group | geometric IL_4WFL_001 IL_56467.8 | |
| IL_3JAH_193 | 1/9/223:288, 1/9/295:298 | No text annotation Not in a motif group | ||
| IL_3JAH_194 | 1/9/317:321, 1/9/330:333 | No text annotation Not in a motif group | ||
| IL_3JAH_195 | 1/9/359:364, 1/9/396:403 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_3JAH_196 | 1/9/366:371, 1/9/393:394 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_3JAH_197 | 1/9/411:413, 1/9/424:429 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_3JAH_198 | 1/9/437:439, 1/9/454:456 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_3JAH_199 | 1/9/459:461, 1/9/468:470 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_3JAH_200 | 1/9/487:489, 1/9/511:512 | Single bulged U Not in a motif group | geometric IL_4LFB_014 IL_83039.13 | |
| IL_3JAH_201 | 1/9/491:495, 1/9/508:509 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_3JAH_202 | 1/9/495:496, 1/9/506:508 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_3JAH_203 | 1/9/528:530, 1/9/554:557 | No text annotation Not in a motif group | ||
| IL_3JAH_204 | 1/9/535:537, 1/9/546:549 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 | |
| IL_3JAH_205 | 1/9/566:569, 1/9/581:584 | tSH-tHW Not in a motif group | geometric IL_5UNE_005 IL_21270.1 | |
| IL_3JAH_206 | 1/9/599:608, 1/9/635:637 | No text annotation Not in a motif group | ||
| IL_3JAH_207 | 1/9/611:617, 1/9/624:632 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_3JAH_208 | 1/9/663:665, 1/9/1162:1164 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_3JAH_209 | 1/9/665:671, 1/9/1161:1162 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_3JAH_210 | 1/9/673:675, 1/9/1030:1032 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_3JAH_211 | 1/9/676:680, 1/9/1025:1029 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_3JAH_212 | 1/9/692:694, 1/9/736:738 | No text annotation Not in a motif group | geometric IL_4M4O_001 IL_95997.1 | |
| IL_3JAH_213 | 1/9/694:696, 1/9/734:736 | UU cWW water inserted Not in a motif group | geometric IL_4E48_002 IL_95997.1 | |
| IL_3JAH_214 | 1/9/745:751, 1/9/791:796 | No text annotation Not in a motif group | ||
| IL_3JAH_215 | 1/9/802:803, 1/9/860:863 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_3JAH_216 | 1/9/805:807, 1/9/856:858 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_3JAH_217 | 1/9/807:815, 1/9/849:856 | No text annotation Not in a motif group | geometric IL_4V88_425 IL_69091.1 | |
| IL_3JAH_218 | 1/9/874:879, 1/9/907:911 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_3JAH_219 | 1/9/922:923, 1/9/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_6N5P_003 IL_50694.2 | |
| IL_3JAH_220 | 1/9/925:927, 1/9/1014:1017 | No text annotation Not in a motif group | geometric IL_1NBS_006 IL_95997.1 | |
| IL_3JAH_221 | 1/9/928:931, 1/9/1010:1013 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_3JAH_222 | 1/9/931:935, 1/9/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_3JAH_223 | 1/9/942:945, 1/9/980:984 | No text annotation Not in a motif group | ||
| IL_3JAH_224 | 1/9/945:947, 1/9/979:980 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_3JAH_225 | 1/9/952:956, 1/9/967:974 | Kink-turn Not in a motif group | homologous IL_4V88_434 IL_45067.2 | |
| IL_3JAH_226 | 1/9/1042:1047, 1/9/1071:1073 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_3JAH_227 | 1/9/1047:1051, 1/9/1067:1071 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.1 | |
| IL_3JAH_228 | 1/9/1091:1093, 1/9/1152:1158 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_3JAH_229 | 1/9/1098:1101, 1/9/1131:1134 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_3JAH_230 | 1/9/1101:1103, 1/9/1129:1131 | No text annotation Not in a motif group | geometric IL_5UNE_001 IL_53251.2 | |
| IL_3JAH_231 | 1/9/1108:1110, 1/9/1123:1124 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_76488.2 | |
| IL_3JAH_232 | 1/9/1168:1175, 1/9/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_3JAH_233 | 1/9/1203:1204, 1/9/1694:1696 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_3JAH_234 | 1/9/1206:1208, 1/9/1691:1692 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_3JAH_235 | 1/9/1214:1217, 1/9/1681:1685 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_3JAH_236 | 1/9/1230:1232, 1/9/1526:1528 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_3JAH_237 | 1/9/1235:1236, 1/9/1521:1523 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_3JAH_238 | 1/9/1270:1272, 1/9/1510:1512 | No text annotation Not in a motif group | homologous IL_4V88_446 IL_95997.1 | |
| IL_3JAH_239 | 1/9/1281:1291, 1/9/1307:1316 | No text annotation Not in a motif group | ||
| IL_3JAH_240 | 1/9/1291:1294, 1/9/1305:1307 | No text annotation Not in a motif group | ||
| IL_3JAH_241 | 1/9/1325:1327, 1/9/1502:1503 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_3JAH_242 | 1/9/1329:1333, 1/9/1498:1500 | Isolated cWS basepair Not in a motif group | geometric IL_4V88_450 IL_76319.2 | |
| IL_3JAH_243 | 1/9/1333:1335, 1/9/1492:1498 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_3JAH_244 | 1/9/1337:1338, 1/9/1488:1490 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_3JAH_245 | 1/9/1347:1349, 1/9/1380:1382 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_3JAH_246 | 1/9/1363:1365, 1/9/1374:1375 | Minor groove platform Not in a motif group | geometric IL_5ML7_009 IL_42622.2 | |
| IL_3JAH_247 | 1/9/1395:1399, 1/9/1447:1450 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.2 | |
| IL_3JAH_248 | 1/9/1400:1401, 1/9/1444:1446 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_3JAH_249 | 1/9/1401:1405, 1/9/1441:1444 | No text annotation Not in a motif group | ||
| IL_3JAH_250 | 1/9/1407:1413, 1/9/1433:1439 | No text annotation Not in a motif group | ||
| IL_3JAH_251 | 1/9/1415:1419, 1/9/1428:1431 | No text annotation Not in a motif group | ||
| IL_3JAH_252 | 1/9/1453:1456, 1/9/1470:1475 | No text annotation Not in a motif group | ||
| IL_3JAH_253 | 1/9/1536:1537, 1/9/1595:1597 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_3JAH_254 | 1/9/1537:1539, 1/9/1594:1595 | No text annotation Not in a motif group | ||
| IL_3JAH_255 | 1/9/1550:1558, 1/9/1577:1582 | No text annotation Not in a motif group | ||
| IL_3JAH_256 | 1/9/1560:1562, 1/9/1573:1575 | No text annotation Not in a motif group | geometric IL_4WF9_018 IL_51629.2 | |
| IL_3JAH_257 | 1/9/1604:1610, 1/9/1629:1635 | No text annotation Not in a motif group | homologous IL_8C3A_469 IL_10092.1 | |
| IL_3JAH_258 | 1/9/1700:1702, 1/9/1833:1836 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_3JAH_259 | 1/9/1702:1705, 1/9/1829:1833 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_3JAH_260 | 1/9/1706:1708, 1/9/1826:1828 | No text annotation Not in a motif group | geometric IL_5VCI_002 IL_95997.1 | |
| IL_3JAH_261 | 1/9/1708:1711, 1/9/1822:1826 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1JID_002 IL_30621.2 | |
| IL_3JAH_262 | 1/9/1714:1716, 1/9/1817:1819 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_3JAH_263 | 1/9/1717:1720, 1/9/1813:1816 | Double sheared Not in a motif group | homologous IL_4V88_468 IL_09705.9 | |
| IL_3JAH_264 | 1/9/1720:1722, 1/9/1812:1813 | Single bulged U Not in a motif group | geometric IL_4V88_469 IL_83039.13 | |
| IL_3JAH_265 | 1/9/1729:1731, 1/9/1803:1805 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_3JAH_266 | 1/9/1733:1736, 1/9/1798:1801 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_3JAH_267 | 1/9/1739:1741, 1/9/1793:1795 | No text annotation Not in a motif group | geometric IL_4E48_001 IL_95997.1 | |
| IL_3JAH_268 | 1/9/1742:1746, 1/9/1788:1792 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_3JAH_269 | 1/9/1750:1751, 1/9/1782:1784 | No text annotation Not in a motif group | ||
| IL_3JAH_270 | 1/9/1751:1752, 1/9/1780:1782 | Single stack bend Not in a motif group | geometric IL_5J7L_249 IL_76488.2 | |
| IL_3JAH_271 | 1/9/1839:1841, 1/9/1858:1859 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3JAH_001 | 1/5/112:116, 1/5/155:160, 1/5/275:278 | No text annotation Not in a motif group | ||
| J3_3JAH_002 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_3JAH_003 | 1/5/448:455, 1/5/701:704, 1/5/1293:1298 | No text annotation Not in a motif group | ||
| J3_3JAH_004 | 1/5/711:713, 1/5/955:976, 1/5/1278:1285 | No text annotation Not in a motif group | ||
| J3_3JAH_005 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation Not in a motif group | homologous J3_5TBW_004 NA | |
| J3_3JAH_006 | 1/5/1545:1548, 1/5/1580:1584, 1/5/1609:1614 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_3JAH_007 | 1/5/2393:2399, 1/5/2805:2807, 1/5/2819:2822 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_3JAH_008 | 1/5/2402:2405, 1/5/2785:2791, 1/5/2800:2802 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_3JAH_009 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_3JAH_010 | 1/5/2575:2576, 1/5/2585:2589, 1/5/2756:2757 | No text annotation Not in a motif group | ||
| J3_3JAH_011 | 1/5/3937:3939, 1/5/4074:4078, 1/5/4168:4173 | No text annotation Not in a motif group | ||
| J3_3JAH_012 | 1/5/4091:4094, 1/5/4114:4129, 1/5/4155:4158 | No text annotation Not in a motif group | ||
| J3_3JAH_013 | 1/5/4241:4243, 1/5/4267:4269, 1/5/4278:4283 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_3JAH_014 | 1/5/4463:4466, 1/5/4491:4493, 1/5/4507:4513 | No text annotation Not in a motif group | homologous J3_5TBW_014 NA | |
| J3_3JAH_015 | 1/5/4970:4972, 1/5/4986:4991, 1/5/5060:5063 | No text annotation Not in a motif group | ||
| J3_3JAH_016 | 1/7/9:14, 1/7/65:66, 1/7/109:110 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_3JAH_017 | 1/8/44:45, 1/8/58:64, 1/8/95:99 | No text annotation Not in a motif group | ||
| J3_3JAH_018 | 1/9/40:41, 1/9/481:487, 1/9/512:514 | No text annotation Not in a motif group | ||
| J3_3JAH_019 | 1/9/682:685, 1/9/917:922, 1/9/1022:1023 | No text annotation Not in a motif group | ||
| J3_3JAH_020 | 1/9/816:819, 1/9/829:831, 1/9/843:848 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_3JAH_021 | 1/9/938:941, 1/9/985:993, 1/9/1000:1004 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_3JAH_022 | 1/9/1094:1096, 1/9/1136:1140, 1/9/1147:1151 | No text annotation Not in a motif group | ||
| J3_3JAH_023 | 1/9/1218:1221, 1/9/1645:1651, 1/9/1673:1680 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_3JAH_024 | 1/9/1225:1228, 1/9/1530:1532, 1/9/1638:1641 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_3JAH_025 | 1/9/1237:1244, 1/9/1255:1266, 1/9/1516:1520 | No text annotation Not in a motif group | ||
| J3_3JAH_026 | 1/9/1272:1277, 1/9/1320:1324, 1/9/1504:1510 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_3JAH_027 | 1/9/1340:1345, 1/9/1384:1389, 1/9/1481:1486 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_3JAH_028 | 1/9/1350:1351, 1/9/1360:1363, 1/9/1375:1379 | No text annotation Not in a motif group | ||
| J3_3JAH_029 | 1/9/1391:1395, 1/9/1450:1453, 1/9/1475:1479 | No text annotation Not in a motif group | ||
| J3_3JAH_030 | 1/9/1532:1536, 1/9/1597:1604, 1/9/1635:1638 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: