Valid loops

#loop idlocationmotif
11/AA/30:32,1/AA/552:553NA
21/AA/44:45,1/AA/396:398NA
31/AA/47:52,1/AA/359:361NA
41/AA/54:56,1/AA/356:357NA
51/AA/63:66,1/AA/103:104NA
61/AA/67:69,1/AA/100:102NA
71/AA/129:131,1/AA/231:232NA
81/AA/132:136,1/AA/227:230NA
91/AA/148:153,1/AA/168:174NA
101/AA/156:158,1/AA/163:165NA
111/AA/186:188,1/AA/189L:191NA
121/AA/188:189A,1/AA/189J:189LNA
131/AA/242:247,1/AA/277:284NA
141/AA/249:252,1/AA/274:275NA
151/AA/292:293,1/AA/304:308NA
161/AA/367:369,1/AA/392:393NA
171/AA/371:375,1/AA/389:390NA
181/AA/375:376,1/AA/387:389NA
191/AA/409:416,1/AA/427:433NA
201/AA/446:450,1/AA/483:488NA
211/AA/450:455,1/AA/476:483NA
221/AA/504:511,1/AA/540:541NA
231/AA/515:521,1/AA/528:536NA
241/AA/569:575,1/AA/880:881NA
251/AA/580:584,1/AA/757:761NA
261/AA/594:596,1/AA/644:645NA
271/AA/597:598,1/AA/640:643NA
281/AA/605:612,1/AA/628:633NA
291/AA/654:655,1/AA/751:754NA
301/AA/657:658,1/AA/747:749NA
311/AA/662:666,1/AA/740:743NA
321/AA/673:678,1/AA/712:717NA
331/AA/683:688,1/AA/699:707NA
341/AA/774:778,1/AA/804:805NA
351/AA/779:783,1/AA/799:803NA
361/AA/887:894,1/AA/905:910NA
371/AA/922:923,1/AA/1393:1395NA
381/AA/925:927,1/AA/1390:1391NA
391/AA/933:935,1/AA/1380:1384NA
401/AA/950:952,1/AA/1229:1231NA
411/AA/953:954,1/AA/1226:1228NA
421/AA/993:997,1/AA/1044:1045NA
431/AA/999:1007,1/AA/1022:1042NA
441/AA/1048:1050,1/AA/1208:1209NA
451/AA/1052:1056,1/AA/1204:1206NA
461/AA/1057:1058,1/AA/1199:1203NA
471/AA/1060:1061,1/AA/1195:1197NA
481/AA/1061:1063,1/AA/1193:1195NA
491/AA/1122:1128,1/AA/1143:1151NA
501/AA/1247:1253,1/AA/1284:1290NA
511/AA/1255:1258,1/AA/1277:1282NA
521/AA/1259:1260,1/AA/1274:1276NA
531/AA/1260:1262,1/AA/1273:1274NA
541/AA/1303:1308,1/AA/1329:1334NA
551/AA/1399:1401,1/AA/1501:1504NA
561/AA/1401:1404,1/AA/1497:1501NA
571/AA/1405:1407,1/AA/1494:1496NA
581/AA/1407:1409,1/AA/1491:1494NA
591/AA/1412:1414,1/AA/1486:1488NA
601/AA/1416:1419,1/AA/1481:1484NA
611/AA/1431:1435,1/AA/1466:1469NA
621/AA/1435:1437,1/AA/1464:1466NA
631/AA/1440:1443,1/AA/1459:1461NA
641/BA/24:30,1/BA/510:516NA
651/BA/36:37,1/BA/442:444NA
661/BA/42:43,1/BA/434:436NA
671/BA/81:85,1/BA/97:105NA
681/BA/183:184,1/BA/212:214NA
691/BA/188:194,1/BA/201:208NA
701/BA/239:245,1/BA/253:258NA
711/BA/272D:272F,1/BA/363D:364NA
721/BA/272J:279,1/BA/361:363NA
731/BA/280:284,1/BA/357:360NA
741/BA/288:290,1/BA/350:353NA
751/BA/293:295,1/BA/343:347NA
761/BA/481:484,1/BA/496:509NA
771/BA/564:566,1/BA/575:577NA
781/BA/606:610,1/BA/618:622NA
791/BA/672:674,1/BA/806:808NA
801/BA/674:678,1/BA/799:806NA
811/BA/697:698,1/BA/763:765NA
821/BA/702:703,1/BA/728:730NA
831/BA/703:707,1/BA/724:728NA
841/BA/738:741,1/BA/756:758NA
851/BA/775:777,1/BA/787:791NA
861/BA/837:838,1/BA/940:942NA
871/BA/844:846,1/BA/931:934NA
881/BA/846:850,1/BA/927:931NA
891/BA/858:862,1/BA/915:919NA
901/BA/862:863,1/BA/913:915NA
911/BA/864:868,1/BA/909:912NA
921/BA/870:872,1/BA/905:907NA
931/BA/875:879,1/BA/898:902NA
941/BA/879:885,1/BA/892:898NA
951/BA/952:954,1/BA/963:965NA
961/BA/994:996,1/BA/1159:1160NA
971/BA/998:1002,1/BA/1153:1157NA
981/BA/1004:1011,1/BA/1150:1151NA
991/BA/1011:1013,1/BA/1149:1150NA
1001/BA/1018:1024,1/BA/1140:1144NA
1011/BA/1024:1030,1/BA/1124:1140NA
1021/BA/1031:1034,1/BA/1121:1123NA
1031/BA/1040:1042,1/BA/1113:1115NA
1041/BA/1043:1052,1/BA/1107:1112NA
1051/BA/1196:1198,1/BA/1247:1250NA
1061/BA/1202:1206,1/BA/1240:1243NA
1071/BA/1208:1215,1/BA/1234:1238NA
1081/BA/1219:1221,1/BA/1229:1230NA
1091/BA/1262:1269,1/BA/2011:2017NA
1101/BA/1310:1313,1/BA/1603:1604NA
1111/BA/1319:1323,1/BA/1331:1333NA
1121/BA/1351:1355,1/BA/1376:1380NA
1131/BA/1357:1361,1/BA/1370:1374NA
1141/BA/1415:1416,1/BA/1582:1587NA
1151/BA/1417:1421,1/BA/1577:1581NA
1161/BA/1433:1435,1/BA/1557:1560NA
1171/BA/1437:1440,1/BA/1551:1555NA
1181/BA/1448:1450,1/BA/1462:1463NA
1191/BA/1469:1473,1/BA/1518:1523NA
1201/BA/1481:1482,1/BA/1506:1510NA
1211/BA/1489:1491,1/BA/1499:1500NA
1221/BA/1526:1530,1/BA/1539:1546NA
1231/BA/1651:1656,1/BA/2004:2006NA
1241/BA/1663:1665,1/BA/1995:1997NA
1251/BA/1666:1669,1/BA/1993:1994NA
1261/BA/1669:1674,1/BA/1990:1993NA
1271/BA/1686:1691,1/BA/1696:1702NA
1281/BA/1770:1771,1/BA/1980:1982NA
1291/BA/1797:1804,1/BA/1813:1822NA
1301/BA/1837:1840,1/BA/1902:1903NA
1311/BA/1841:1842,1/BA/1898:1901NA
1321/BA/1846:1849,1/BA/1893:1894NA
1331/BA/1851:1855,1/BA/1887:1891NA
1341/BA/1856:1860,1/BA/1882:1886NA
1351/BA/1933:1934,1/BA/1964:1967NA
1361/BA/1934:1945,1/BA/1961:1964NA
1371/BA/2050:2052,1/BA/2617:2618NA
1381/BA/2054:2057,1/BA/2611:2615NA
1391/BA/2067:2069,1/BA/2442:2443NA
1401/BA/2070:2071,1/BA/2438:2441NA
1411/BA/2081:2083,1/BA/2236:2239NA
1421/BA/2085:2087,1/BA/2232:2234NA
1431/BA/2101:2103,1/BA/2186:2188NA
1441/BA/2108:2110,1/BA/2179:2181NA
1451/BA/2110:2120,1/BA/2178:2179NA
1461/BA/2124:2127,1/BA/2161:2174NA
1471/BA/2129:2136,1/BA/2155:2159NA
1481/BA/2136:2141,1/BA/2150:2155NA
1491/BA/2297:2299,1/BA/2317:2321NA
1501/BA/2350:2353,1/BA/2364:2367NA
1511/BA/2401:2403,1/BA/2414:2415NA
1521/BA/2453:2454,1/BA/2498:2500NA
1531/BA/2454:2455,1/BA/2496:2498NA
1541/BA/2457:2459,1/BA/2493:2494NA
1551/BA/2459:2461,1/BA/2489:2493NA
1561/BA/2466:2470,1/BA/2480:2484NA
1571/BA/2507:2508,1/BA/2580:2582NA
1581/BA/2510:2512,1/BA/2574:2578NA
1591/BA/2512:2513,1/BA/2571:2574NA
1601/BA/2522:2523,1/BA/2540:2543NA
1611/BA/2591:2592,1/BA/2601:2603NA
1621/BA/2636:2640,1/BA/2774:2782NA
1631/BA/2652:2658,1/BA/2663:2668NA
1641/BA/2680:2684,1/BA/2725:2727NA
1651/BA/2687:2691,1/BA/2718:2722NA
1661/BA/2695:2696,1/BA/2711:2714NA
1671/BA/2737:2742,1/BA/2762:2767NA
1681/BA/2838:2839,1/BA/2878:2880NA
1691/BA/2843:2846,1/BA/2870:2874NA
1701/BA/2847:2852,1/BA/2865:2869NA
1711/BB/17:18,1/BB/65:67NA
1721/BB/20:22,1/BB/61:63NA
1731/BB/23:28,1/BB/56:60NA
1741/BB/30:32,1/BB/50:54NA
1751/BB/33:38,1/BB/44:49NA
1761/BB/71:79,1/BB/98:106NA
1771/BB/80:82,1/BB/95:97NA

Problematic loops

#loop idProblemSequence
1UGG,CCA
2GCG,CGC
3CUC,GAG
4CGC,GCG
5CCG,CGG
6GGGA,UCCC
7CGCG,CGCG

Valid loops

#loop idlocationmotif
11/AA/12:22NA
21/AA/158:163NA
31/AA/189C:189HNA
41/AA/201:216NA
51/AA/259:267NA
61/AA/296:301NA
71/AA/320:333NA
81/AA/341:348NA
91/AA/379:384NA
101/AA/419:424NA
111/AA/458:473NA
121/AA/522:527NA
131/AA/617:623NA
141/AA/689:698NA
151/AA/726:731NA
161/AA/786:796NA
171/AA/838:848NA
181/AA/862:867NA
191/AA/897:902NA
201/AA/963:972NA
211/AA/1012:1017NA
221/AA/1076:1081NA
231/AA/1089:1096NA
241/AA/1128:1143NA
251/AA/1165:1171NA
261/AA/1265:1270NA
271/AA/1314:1323NA
281/AA/1356:1366NA
291/AA/1445:1457NA
301/AA/1515:1520NA
311/AV/13:22HL_81327.2
321/AV/31:39HL_59710.7
331/AV/53:61HL_33239.14
341/BA/59:68NA
351/BA/87:95NA
361/BA/123:128NA
371/BA/139:142ANA
381/BA/154A:171NA
391/BA/194:201NA
401/BA/225:230NA
411/BA/246:252NA
421/BA/271I:271ONA
431/BA/305:312NA
441/BA/319:323NA
451/BA/327:335NA
461/BA/382:392NA
471/BA/410:417NA
481/BA/462:467NA
491/BA/487:493NA
501/BA/543:549NA
511/BA/566:575NA
521/BA/612:615NA
531/BA/629:634NA
541/BA/641:647NA
551/BA/712:719NA
561/BA/744:753NA
571/BA/779:785NA
581/BA/826:831NA
591/BA/955:962NA
601/BA/978:985NA
611/BA/1059:1079NA
621/BA/1092:1099NA
631/BA/1170:1179NA
641/BA/1222:1227NA
651/BA/1281:1289NA
661/BA/1324:1330NA
671/BA/1363:1368NA
681/BA/1389:1398NA
691/BA/1450A:1461NA
701/BA/1492:1498NA
711/BA/1531:1538NA
721/BA/1565:1568NA
731/BA/1612:1619NA
741/BA/1631:1635NA
751/BA/1691:1696NA
761/BA/1720:1742NA
771/BA/1752:1756NA
781/BA/1777:1787NA
791/BA/1806:1811NA
801/BA/1864:1878NA
811/BA/1910:1920NA
821/BA/1949:1957NA
831/BA/2027:2036NA
841/BA/2143:2148NA
851/BA/2205:2219NA
861/BA/2248:2256NA
871/BA/2264:2276NA
881/BA/2303:2313NA
891/BA/2324:2331NA
901/BA/2355:2362NA
911/BA/2374:2379NA
921/BA/2404:2413NA
931/BA/2471:2479NA
941/BA/2528:2535NA
951/BA/2551:2557NA
961/BA/2594:2599NA
971/BA/2658:2663NA
981/BA/2701:2706NA
991/BA/2745:2759NA
1001/BA/2819:2827NA
1011/BA/2856:2861NA
1021/BB/38:44NA
1031/BB/86:91NA

Problematic loops

#loop idProblemSequence
176, 77, 78, 79, 80, 81, 82, 83, 84, 88, 89, 90, 91, 92, 93
2885, 886, 887, 888, 889, 890, 892
32792, 2793, 2794, 2795, 2796, 2799, 2801, 2801, 2802, 2803, 2804

Valid loops

#loop idlocationmotif
11/AA/826:829,1/AA/857:861,1/AA/868:874NA
21/AA/936:939,1/AA/1344:1350,1/AA/1372:1379NA
31/AA/943:946,1/AA/1235:1237,1/AA/1337:1340NA
41/AA/955:962,1/AA/973:984,1/AA/1221:1225NA
51/AA/990:993,1/AA/1045:1047,1/AA/1210:1215NA
61/AA/1063:1068,1/AA/1107:1113,1/AA/1187:1193NA
71/AA/1116:1118,1/AA/1155:1161,1/AA/1175:1184NA
81/AA/1237:1241,1/AA/1296:1303,1/AA/1334:1337NA
91/BA/683:689,1/BA/773:775,1/BA/791:794NA
101/BA/698:700,1/BA/732:736,1/BA/760:763NA
111/BA/1055:1057,1/BA/1081:1091,1/BA/1100:1104NA
121/BA/1298:1303,1/BA/1625:1627,1/BA/1639:1642NA
131/BA/1306:1309,1/BA/1605:1611,1/BA/1620:1622NA
141/BA/2091:2093,1/BA/2196:2200,1/BA/2223:2228NA
151/BA/2295:2297,1/BA/2321:2323,1/BA/2332:2337NA
161/BA/2517:2520,1/BA/2545:2547,1/BA/2561:2567NA

Problematic loops

No problematic loops


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