5XYM Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5XYM_001 | 1/A/59:68 | No text annotation Not in a motif group | geometric HL_6JXM_002 HL_88526.2 | |
| HL_5XYM_002 | 1/A/87:96 | No text annotation Not in a motif group | homologous HL_4WF9_002 HL_96598.1 | |
| HL_5XYM_003 | 1/A/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_5XYM_004 | 1/A/137:144 | No text annotation Not in a motif group | homologous HL_4WF9_004 HL_84085.2 | |
| HL_5XYM_006 | 1/A/196:203 | No text annotation Not in a motif group | homologous HL_4WF9_006 HL_06192.2 | |
| HL_5XYM_007 | 1/A/227:233 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_5XYM_008 | 1/A/249:255 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_5XYM_010 | 1/A/390:397 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_5XYM_011 | 1/A/404:408 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_5XYM_012 | 1/A/411:421 | No text annotation Not in a motif group | ||
| HL_5XYM_013 | 1/A/472:484 | No text annotation Not in a motif group | ||
| HL_5XYM_014 | 1/A/501:508 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_5XYM_015 | 1/A/553:558 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_5XYM_016 | 1/A/578:583 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_5XYM_018 | 1/A/661:670 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_018 HL_89380.2 | |
| HL_5XYM_019 | 1/A/708:713 | No text annotation Not in a motif group | ||
| HL_5XYM_020 | 1/A/726:731 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_5XYM_021 | 1/A/738:744 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_5XYM_022 | 1/A/757:764 | No text annotation Not in a motif group | ||
| HL_5XYM_023 | 1/A/830:837 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5XYM_024 | 1/A/862:871 | No text annotation Not in a motif group | homologous HL_7A0S_022 HL_39334.6 | |
| HL_5XYM_025 | 1/A/897:903 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_5XYM_026 | 1/A/944:949 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_5XYM_028 | 1/A/1075:1082 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_5XYM_029 | 1/A/1099:1106 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_5XYM_031 | 1/A/1339:1344 | No text annotation Not in a motif group | homologous HL_4WF9_031 HL_87030.2 | |
| HL_5XYM_032 | 1/A/1399:1407 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_032 HL_89380.2 | |
| HL_5XYM_033 | 1/A/1442:1448 | No text annotation Not in a motif group | homologous HL_7A0S_033 HL_46680.1 | |
| HL_5XYM_034 | 1/A/1481:1486 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_5XYM_035 | 1/A/1507:1516 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_5XYM_037 | 1/A/1715:1721 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_5XYM_038 | 1/A/1788:1791 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_5XYM_039 | 1/A/1833:1840 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_5XYM_040 | 1/A/1851:1857 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_5XYM_041 | 1/A/1912:1917 | UNCG Not in a motif group | geometric HL_5D5L_003 HL_03562.2 | |
| HL_5XYM_043 | 1/A/1972:1976 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_5XYM_044 | 1/A/1997:2007 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_5XYM_045 | 1/A/2026:2031 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_5XYM_047 | 1/A/2137:2147 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_5XYM_048 | 1/A/2176:2184 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_5XYM_049 | 1/A/2254:2263 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5XYM_052 | 1/A/2475:2483 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_5XYM_053 | 1/A/2491:2503 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_5XYM_054 | 1/A/2530:2540 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_5XYM_055 | 1/A/2551:2558 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_5XYM_056 | 1/A/2582:2589 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_5XYM_057 | 1/A/2601:2606 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_5XYM_058 | 1/A/2631:2640 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_5XYM_059 | 1/A/2698:2706 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_5XYM_060 | 1/A/2755:2762 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_5XYM_061 | 1/A/2778:2784 | No text annotation Not in a motif group | homologous HL_7A0S_061 HL_43656.2 | |
| HL_5XYM_062 | 1/A/2821:2826 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_5XYM_063 | 1/A/2885:2890 | GNRA Not in a motif group | homologous HL_4WF9_060 HL_42097.1 | |
| HL_5XYM_064 | 1/A/2928:2933 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_5XYM_065 | 1/A/2972:2986 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_5XYM_066 | 1/A/3022:3025 | No text annotation Not in a motif group | geometric HL_5TBW_071 HL_53837.1 | |
| HL_5XYM_067 | 1/A/3043:3051 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_5XYM_068 | 1/A/3080:3085 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_5XYM_069 | 1/B/39:45 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_5XYM_070 | 1/B/85:90 | Other HL Not in a motif group | geometric HL_2CZJ_007 HL_53845.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5XYM_005 | No text annotation | ||
| HL_5XYM_009 | No text annotation | ||
| HL_5XYM_017 | No text annotation | ||
| HL_5XYM_027 | No text annotation | ||
| HL_5XYM_030 | No text annotation | ||
| HL_5XYM_036 | No text annotation | ||
| HL_5XYM_042 | No text annotation | ||
| HL_5XYM_046 | No text annotation | ||
| HL_5XYM_050 | No text annotation | ||
| HL_5XYM_051 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5XYM_001 | 1/A/24:30, 1/A/600:606 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_4WF9_001 IL_66414.6 | |
| IL_5XYM_002 | 1/A/36:37, 1/A/533:535 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_5XYM_003 | 1/A/43:44, 1/A/525:527 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_5XYM_004 | 1/A/81:85, 1/A/98:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_5XYM_005 | 1/A/190:196, 1/A/203:210 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.7 | |
| IL_5XYM_006 | 1/A/242:248, 1/A/256:261 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_5XYM_007 | 1/A/385:387, 1/A/400:401 | Single bulged U Not in a motif group | geometric IL_3TZR_002 IL_83039.13 | |
| IL_5XYM_008 | 1/A/572:575, 1/A/586:599 | No text annotation Not in a motif group | homologous IL_4WF9_015 IL_60992.6 | |
| IL_5XYM_009 | 1/A/626:629, 1/A/649:652 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_5XYM_010 | 1/A/659:661, 1/A/670:672 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_95997.1 | |
| IL_5XYM_011 | 1/A/686:688, 1/A/783:784 | Single bulged A Not in a motif group | homologous IL_7A0S_012 IL_37497.2 | |
| IL_5XYM_012 | 1/A/702:706, 1/A/715:719 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_5XYM_013 | 1/A/790:792, 1/A/924:926 | No text annotation Not in a motif group | homologous IL_4WF9_020 IL_95997.1 | |
| IL_5XYM_014 | 1/A/792:796, 1/A/917:924 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.6 | |
| IL_5XYM_015 | 1/A/815:816, 1/A/881:883 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.2 | |
| IL_5XYM_016 | 1/A/820:821, 1/A/846:848 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_5XYM_017 | 1/A/821:825, 1/A/842:846 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_5XYM_018 | 1/A/856:858, 1/A/875:876 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_5XYM_019 | 1/A/893:895, 1/A/905:909 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.6 | |
| IL_5XYM_020 | 1/A/955:956, 1/A/1060:1062 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_5XYM_021 | 1/A/962:964, 1/A/1051:1054 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_52767.2 | |
| IL_5XYM_022 | 1/A/964:967, 1/A/1046:1051 | No text annotation Not in a motif group | ||
| IL_5XYM_023 | 1/A/974:980, 1/A/1033:1039 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_5XYM_024 | 1/A/980:981, 1/A/1031:1033 | Minor groove platform Not in a motif group | geometric IL_4V9F_034 IL_42622.2 | |
| IL_5XYM_025 | 1/A/982:987, 1/A/1027:1030 | C-loop Not in a motif group | homologous IL_4WF9_033 IL_02509.1 | |
| IL_5XYM_026 | 1/A/989:991, 1/A/1023:1025 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_034 IL_52767.2 | |
| IL_5XYM_027 | 1/A/1069:1070, 1/A/1087:1089 | Single bulged G Not in a motif group | geometric IL_4LVW_002 IL_00225.2 | |
| IL_5XYM_028 | 1/A/1115:1117, 1/A/1281:1282 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_5XYM_029 | 1/A/1119:1123, 1/A/1275:1279 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_5XYM_030 | 1/A/1125:1132, 1/A/1272:1273 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
| IL_5XYM_031 | 1/A/1132:1134, 1/A/1271:1272 | Single bulged U Not in a motif group | homologous IL_4WF9_038 IL_83039.13 | |
| IL_5XYM_032 | 1/A/1139:1145, 1/A/1261:1266 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_5XYM_033 | 1/A/1145:1151, 1/A/1245:1261 | No text annotation Not in a motif group | geometric IL_4WF9_040 IL_50715.1 | |
| IL_5XYM_034 | 1/A/1152:1155, 1/A/1242:1244 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7A0S_038 IL_82068.2 | |
| IL_5XYM_035 | 1/A/1314:1316, 1/A/1365:1368 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_5XYM_036 | 1/A/1325:1332, 1/A/1352:1356 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5XYM_037 | 1/A/1336:1337, 1/A/1346:1348 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_37497.2 | |
| IL_5XYM_038 | 1/A/1380:1387, 1/A/2238:2244 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_5XYM_039 | 1/A/1428:1431, 1/A/1824:1825 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.2 | |
| IL_5XYM_040 | 1/A/1437:1441, 1/A/1449:1451 | C-loop Not in a motif group | homologous IL_7A0S_047 IL_37712.2 | |
| IL_5XYM_041 | 1/A/1469:1473, 1/A/1494:1498 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5XYM_042 | 1/A/1475:1479, 1/A/1488:1492 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_5XYM_043 | 1/A/1641:1645, 1/A/1800:1803 | Other IL Not in a motif group | homologous IL_4WF9_054 IL_04059.1 | |
| IL_5XYM_044 | 1/A/1656:1659, 1/A/1780:1784 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_5XYM_045 | 1/A/1661:1664, 1/A/1774:1778 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5XYM_046 | 1/A/1692:1695, 1/A/1745:1749 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_5XYM_047 | 1/A/1697:1702, 1/A/1738:1743 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_3LQX_002 IL_76308.4 | |
| IL_5XYM_048 | 1/A/1704:1707, 1/A/1728:1736 | No text annotation Not in a motif group | ||
| IL_5XYM_050 | 1/A/1710:1714, 1/A/1722:1725 | No text annotation Not in a motif group | ||
| IL_5XYM_051 | 1/A/1872:1877, 1/A/2231:2233 | No text annotation Not in a motif group | ||
| IL_5XYM_052 | 1/A/1884:1886, 1/A/2222:2224 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
| IL_5XYM_053 | 1/A/1887:1890, 1/A/2220:2221 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_5XYM_054 | 1/A/1890:1895, 1/A/2217:2220 | Intercalated tWH Not in a motif group | homologous IL_4WF9_065 IL_82842.2 | |
| IL_5XYM_055 | 1/A/1907:1912, 1/A/1917:1923 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_5XYM_056 | 1/A/1933:1938, 1/A/1962:1966 | No text annotation Not in a motif group | ||
| IL_5XYM_057 | 1/A/1990:1991, 1/A/2207:2209 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_5XYM_058 | 1/A/2018:2024, 1/A/2033:2041 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5XYM_059 | 1/A/2057:2060, 1/A/2129:2130 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_5XYM_060 | 1/A/2061:2062, 1/A/2125:2128 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_5XYM_061 | 1/A/2066:2069, 1/A/2120:2121 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_5XYM_062 | 1/A/2070:2075, 1/A/2114:2119 | No text annotation Not in a motif group | ||
| IL_5XYM_063 | 1/A/2076:2081, 1/A/2108:2113 | No text annotation Not in a motif group | ||
| IL_5XYM_064 | 1/A/2160:2161, 1/A/2191:2194 | No text annotation Not in a motif group | homologous IL_4WF9_076 IL_59677.2 | |
| IL_5XYM_065 | 1/A/2161:2172, 1/A/2188:2191 | No text annotation Not in a motif group | geometric IL_7A0S_072 IL_81589.2 | |
| IL_5XYM_066 | 1/A/2277:2279, 1/A/2844:2845 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_5XYM_067 | 1/A/2281:2283, 1/A/2839:2842 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_5XYM_068 | 1/A/2296:2297, 1/A/2665:2668 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_5XYM_069 | 1/A/2307:2309, 1/A/2463:2466 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5XYM_070 | 1/A/2311:2313, 1/A/2459:2461 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_5XYM_071 | 1/A/2320:2322, 1/A/2419:2421 | Isolated cWH basepair Not in a motif group | geometric IL_3FOZ_001 IL_51629.2 | |
| IL_5XYM_072 | 1/A/2428:2430, 1/A/2447:2448 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_5XYM_073 | 1/A/2577:2580, 1/A/2591:2594 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_5XYM_074 | 1/A/2628:2630, 1/A/2641:2642 | No text annotation Not in a motif group | ||
| IL_5XYM_075 | 1/A/2680:2681, 1/A/2725:2727 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_5XYM_076 | 1/A/2681:2682, 1/A/2723:2725 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_5XYM_077 | 1/A/2684:2686, 1/A/2720:2721 | Major groove platform Not in a motif group | geometric IL_7A0S_085 IL_27635.1 | |
| IL_5XYM_078 | 1/A/2686:2688, 1/A/2716:2720 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_337 IL_92788.2 | |
| IL_5XYM_079 | 1/A/2688:2690, 1/A/2714:2716 | No text annotation Not in a motif group | geometric IL_5B2P_001 IL_95997.1 | |
| IL_5XYM_080 | 1/A/2693:2697, 1/A/2707:2711 | Triple sheared Not in a motif group | homologous IL_4WF9_093 IL_56467.8 | |
| IL_5XYM_081 | 1/A/2734:2735, 1/A/2807:2809 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_5XYM_082 | 1/A/2737:2739, 1/A/2801:2805 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_340 IL_90933.2 | |
| IL_5XYM_083 | 1/A/2739:2740, 1/A/2798:2801 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_5XYM_084 | 1/A/2749:2750, 1/A/2767:2770 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_5XYM_085 | 1/A/2818:2819, 1/A/2828:2830 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_5XYM_086 | 1/A/2863:2867, 1/A/3001:3009 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_5XYM_087 | 1/A/2879:2885, 1/A/2890:2895 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7A0S_094 IL_16458.1 | |
| IL_5XYM_088 | 1/A/2907:2911, 1/A/2952:2954 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_5XYM_089 | 1/A/2914:2918, 1/A/2945:2949 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_5XYM_090 | 1/A/2922:2923, 1/A/2938:2941 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_5XYM_091 | 1/A/2964:2969, 1/A/2989:2994 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_5XYM_092 | 1/A/3020:3022, 1/A/3025:3028 | No text annotation Not in a motif group | homologous IL_4WF9_105 NA | |
| IL_5XYM_093 | 1/A/3062:3064, 1/A/3101:3104 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
| IL_5XYM_094 | 1/A/3067:3069, 1/A/3095:3098 | No text annotation Not in a motif group | homologous IL_4WF9_107 IL_02284.5 | |
| IL_5XYM_095 | 1/A/3071:3076, 1/A/3089:3093 | No text annotation Not in a motif group | homologous IL_4WF9_108 IL_83162.5 | |
| IL_5XYM_096 | 1/B/18:19, 1/B/66:68 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.2 | |
| IL_5XYM_097 | 1/B/24:31, 1/B/55:61 | No text annotation Not in a motif group | ||
| IL_5XYM_098 | 1/B/31:33, 1/B/51:55 | No text annotation Not in a motif group | geometric IL_4WF9_114 IL_10810.1 | |
| IL_5XYM_099 | 1/B/35:39, 1/B/45:49 | Symmetric double minor groove platform Not in a motif group | geometric IL_5NS3_002 IL_58103.6 | |
| IL_5XYM_100 | 1/B/72:80, 1/B/95:103 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5XYM_049 | Not an internal loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5XYM_001 | 1/A/30:31, 1/A/565:572, 1/A/599:600 | No text annotation Not in a motif group | ||
| J3_5XYM_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_5XYM_003 | 1/A/320:322, 1/A/460:466, 1/A/490:495 | No text annotation Not in a motif group | ||
| J3_5XYM_004 | 1/A/801:807, 1/A/891:893, 1/A/909:912 | No text annotation Not in a motif group | ||
| J3_5XYM_005 | 1/A/816:818, 1/A/850:854, 1/A/878:881 | No text annotation Not in a motif group | ||
| J3_5XYM_006 | 1/A/1416:1421, 1/A/1846:1848, 1/A/1860:1863 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_5XYM_007 | 1/A/1424:1427, 1/A/1826:1832, 1/A/1841:1843 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_5XYM_008 | 1/A/1462:1468, 1/A/1499:1503, 1/A/1520:1521 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_5XYM_009 | 1/A/1667:1670, 1/A/1689:1691, 1/A/1750:1771 | No text annotation Not in a motif group | ||
| J3_5XYM_010 | 1/A/2317:2319, 1/A/2422:2426, 1/A/2450:2455 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_5XYM_011 | 1/A/2522:2526, 1/A/2544:2550, 1/A/2559:2564 | No text annotation Not in a motif group | ||
| J3_5XYM_012 | 1/A/2744:2747, 1/A/2772:2774, 1/A/2788:2794 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_5XYM_013 | 1/A/3038:3040, 1/A/3054:3060, 1/A/3106:3110 | No text annotation Not in a motif group | ||
| J3_5XYM_014 | 1/B/10:17, 1/B/69:71, 1/B/104:108 | No text annotation Not in a motif group | homologous J3_7A0S_014 NA |
Problematic loops
No problematic loops
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