#Varna 2DMotifNtsSize
1
  • IL_48256.1
IL_48256.1
  • Basepair signature: cWW-cWW
  • History status: > 2 parents
  • Name: 1-3 bulged nucleotides
5360
2
  • IL_92602.1
IL_92602.1
  • Basepair signature: cWW-cWW-cWW
  • History status: > 2 parents
  • Name: Non-canonical cWW basepair
6309
3
  • IL_41766.9
IL_41766.9
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Updated, 1 parent
  • Name: Tandem cWW pairs (Not AU or GC)
888
4
  • IL_39199.7
IL_39199.7
  • Basepair signature: cWW-tHS-cSH-cWW
  • History status: Updated, 1 parent
  • Name: Hoogsteen-edge Platform, Single bulged base
570
5
  • IL_44540.7
IL_44540.7
  • Basepair signature: cWW-cSH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Sugar-edge, 1-base platform, consensus tHS
562
6
  • IL_67828.1
IL_67828.1
  • Basepair signature: cWW-R-cWW
  • History status: > 2 parents
  • Name: 23S H91 IL | Single-Base Intercalation Site | Single, unpaired intercalated base, consensus A | 16S h32-h33-h34 3WJ
561
7
  • IL_81965.1
IL_81965.1
  • Basepair signature: cWW-tSH-tHS-tHS-cWW
  • History status: > 2 parents
  • Name: Triple sheared (tSH-tHS-tHS) no inserted bases | Double sheared with wobble cWW.
1044
8
  • IL_82444.4
IL_82444.4
  • Basepair signature: cWW-cWH-cWW
  • History status: Updated, 2 parents
  • Name: cWH basepair
642
9
  • IL_13959.7
IL_13959.7
  • Basepair signature: cWW-tSH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Double Sheared (tSH-tHS)
840
10
  • IL_82822.1
IL_82822.1
  • Basepair signature: cWW-cWW
  • History status: New id, 2 parents
  • Name: One or more bulged bases
533
11
  • IL_93424.7
IL_93424.7
  • Basepair signature: cWW-tSH-R-tHW-cWW
  • History status: Updated, 1 parent
  • Name: tSH-inserted-tHW
931
12
  • IL_73276.8
IL_73276.8
  • Basepair signature: cWW-tHW-cSW-R-cWW
  • History status: Updated, 2 parents
  • Name: C-loop
729
13
  • IL_55938.7
IL_55938.7
  • Basepair signature: cWW-cWW-cSH-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 89 (H89) IL2. cSH Platform.
727
14
  • IL_65553.11
IL_65553.11
  • Basepair signature: cWW-cSS-tSS-L-tSH-tSS-tHS-tHW-cWW-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Kink-turn
1327
15
  • IL_85647.6
IL_85647.6
  • Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Sarcin-ricin parent motif with 15 Nts
1525
16
  • IL_92027.6
IL_92027.6
  • Basepair signature: cWW-cSH-cSW-cWW
  • History status: Updated, 1 parent
  • Name: 16S h21 S8 binding site
624
17
  • IL_53587.1
IL_53587.1
  • Basepair signature: cWW-cSW-cWW
  • History status: > 2 parents
  • Name: IL_53587.1 is a mixed group with either one cSW pair or an intercalated base
622
18
  • IL_24982.8
IL_24982.8
  • Basepair signature: cWW-tSH-tHW-tHS-cWW
  • History status: Updated, 2 parents
  • Name: SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif
1021
19
  • IL_34098.1
IL_34098.1
  • Basepair signature: cWW-cWW-L-cWW
  • History status: New id, 1 parent
  • Name: cWW with bulged base
719
20
  • IL_37104.6
IL_37104.6
  • Basepair signature: cWW-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Single sheared with bulged bases
718
21
  • IL_68200.1
IL_68200.1
  • Basepair signature: cWW-cWW
  • History status: New id, 2 parents
  • Name: One or more bulged nucleotides
518
22
  • IL_49493.7
IL_49493.7
  • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Sarcin-ricin Parent Motif - bacterial LSU H95 IL
1317
23
  • IL_37964.1
IL_37964.1
  • Basepair signature: cWW-tHS-R-cWW
  • History status: New id, 1 parent
  • Name: Recurrent Sub-motif found in junctions
616
24
  • IL_94430.8
IL_94430.8
  • Basepair signature: cWW-cSW-cWW
  • History status: Updated, 2 parents
  • Name: 16S h32-h33-h34 3WJ
515
25
  • IL_19986.1
IL_19986.1
  • Basepair signature: cWW-cWW-cSW-cWW-cSH-cWW
  • History status: > 2 parents
  • Name: Pair and triple
915
26
  • IL_67038.1
IL_67038.1
  • Basepair signature: cWW-tHS-cWW
  • History status: New id, 2 parents
  • Name: 23S H91 IL | Single-Base Intercalation Site
615
27
  • IL_58261.1
IL_58261.1
  • Basepair signature: cWW-cWW-tSH-tHS-tHS-cWW
  • History status: New id, 2 parents
  • Name: SRP Loop E-like motif | Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif
1214
28
  • IL_49203.1
IL_49203.1
  • Basepair signature: cWW-cWW-cSW-cWW-tHS-cWW
  • History status: New id, 1 parent
  • Name: Double sheared with wobble cWW.
1014
29
  • IL_31555.7
IL_31555.7
  • Basepair signature: cWW-R-tSH-tHS-cWW
  • History status: Updated, 2 parents
  • Name: Tandem sheared with inserted, unpaired purine
913
30
  • IL_18271.1
IL_18271.1
  • Basepair signature: cWW-L-cWW
  • History status: > 2 parents
  • Name: Single, unpaired intercalated base, consensus A | 23S H91 IL
512
31
  • IL_89033.1
IL_89033.1
  • Basepair signature: cWW-L-L-L-cSH-L-cWW
  • History status: New id, 2 parents
  • Name: 23S H41 IL and 16S h18 IL : Has large bulge on one side
1012
32
  • IL_27005.1
IL_27005.1
  • Basepair signature: cWW-cWW-cWW
  • History status: > 2 parents
  • Name: Non-canonical cWW
612
33
  • IL_11015.2
IL_11015.2
  • Basepair signature: cWW-cSH-tHS-cWW
  • History status: Updated, 2 parents
  • Name: tHS and base triple with flanking pair
711
34
  • IL_86933.1
IL_86933.1
  • Basepair signature: cWW-cWW-tSH-tHS-tHS-L-R-cWW
  • History status: New id, 1 parent
  • Name: Quadruple sheared (tSH-tHS-tHS-tHS). LSU Helix 2 (H2).
1411
35
  • IL_92114.4
IL_92114.4
  • Basepair signature: cWW-cSH-tHW-L-cWW
  • History status: Updated, 1 parent
  • Name: GAAA loop receptor "platform" motif
910
36
  • IL_92122.1
IL_92122.1
  • Basepair signature: cWW-cWW-tWH-L-tHS-cWW
  • History status: New id, 1 parent
1110
37
  • IL_65542.1
IL_65542.1
  • Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW
  • History status: New id, 2 parents
  • Name: SRP Loop E-like motif | Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif
1210
38
  • IL_02809.4
IL_02809.4
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Updated, 1 parent
  • Name: REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
810
39
  • IL_72158.6
IL_72158.6
  • Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 62 (H62) IL
139
40
  • IL_93568.5
IL_93568.5
  • Basepair signature: cWW-tSH-tHS-tHS-L-R-cWW
  • History status: Updated, 1 parent
  • Name: Triple Sheared (tSH-tHS-tHS) with wobble cWW.
129
41
  • IL_38078.1
IL_38078.1
  • Basepair signature: cWW-cWW-L-R-L-cWW-cWW
  • History status: New id, 1 parent
119
42
  • IL_70237.6
IL_70237.6
  • Basepair signature: cWW-L-L-cWS-tSW-R-R-cWW
  • History status: Updated, 1 parent
109
43
  • IL_53635.6
IL_53635.6
  • Basepair signature: cWW-R-tHW-tHW-tWW-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 32 (H32) IL
139
44
  • IL_73000.3
IL_73000.3
  • Basepair signature: cWW-cSW-cSH-cWW
  • History status: Updated, 2 parents
  • Name: cHS-cWS
69
45
  • IL_86357.6
IL_86357.6
  • Basepair signature: cWW-tWW-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 61 IL2
69
46
  • IL_74856.3
IL_74856.3
  • Basepair signature: cWW-cWW-cSH-R-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 89 (H89) IL2
88
47
  • IL_12849.1
IL_12849.1
  • Basepair signature: cWW-cWW-tSH-cWW
  • History status: New id, 2 parents
78
48
  • IL_13069.6
IL_13069.6
  • Basepair signature: cWW-cWW
  • History status: Updated, 1 parent
  • Name: LSU 3WJ H32-H33-H35A
88
49
  • IL_51342.1
IL_51342.1
  • Basepair signature: cWW-L-cWW-cWW
  • History status: > 2 parents
  • Name: Non-canonical cWW with inserted stacked base.
78
50
  • IL_32902.1
IL_32902.1
  • Basepair signature: cWW-cWW-cWH-cWW
  • History status: > 2 parents
  • Name: Stacked cWW-cWH pairs
88
51
  • IL_39212.1
IL_39212.1
  • Basepair signature: cWW-L-L-L-tHS-cWW
  • History status: New id, 1 parent
98
52
  • IL_64847.2
IL_64847.2
  • Basepair signature: cWW-tWH-tSH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
107
53
  • IL_82188.4
IL_82188.4
  • Basepair signature: cWW-tSH-L-R-R-R-R-L-L-L-cWW
  • History status: Updated, 1 parent
  • Name: LSU H68 IL from H.m.
147
54
  • IL_31066.5
IL_31066.5
  • Basepair signature: cWW-R-cWW
  • History status: Updated, 1 parent
  • Name: SSU Helix 44 (h44) extension
77
55
  • IL_98016.1
IL_98016.1
  • Basepair signature: cWW-R-cWW
  • History status: > 2 parents
  • Name: One or more bulged nucleotides
57
56
  • IL_18916.1
IL_18916.1
  • Basepair signature: cWW-cWW
  • History status: > 2 parents
  • Name: One or more bulged nucleotides
57
57
  • IL_08926.5
IL_08926.5
  • Basepair signature: cWW-cHH-cWW
  • History status: Updated, 1 parent
  • Name: 23S H91 IL
57
58
  • IL_28572.4
IL_28572.4
  • Basepair signature: cWW-tWH-cSW-L-R-R-L-tHS-cWW
  • History status: Updated, 1 parent
  • Name: 16S h18 kink-turn like motif
167
59
  • IL_25230.5
IL_25230.5
  • Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Bacterial 5S rRNA Loop E
186
60
  • IL_01551.1
IL_01551.1
  • Basepair signature: cWW-L-R-R-R-R-R-L-L-L-cWW
  • History status: New id, 1 parent
136
61
  • IL_77920.1
IL_77920.1
  • Basepair signature: cWW-L-R-R-bif-cWW
  • History status: > 2 parents
96
62
  • IL_10743.1
IL_10743.1
  • Basepair signature: cWW-L-R-R-L-L-cWW
  • History status: > 2 parents
96
63
  • IL_51439.1
IL_51439.1
  • Basepair signature: cWW-tSH-L-L-tHH-cWW
  • History status: New id, 2 parents
116
64
  • IL_15123.3
IL_15123.3
  • Basepair signature: cWW-L-R-cHW-L-L-L-L-L-cWW
  • History status: Updated, 1 parent
  • Name: Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th.
166
65
  • IL_02359.6
IL_02359.6
  • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
  • History status: Updated, 1 parent
166
66
  • IL_60760.1
IL_60760.1
  • Basepair signature: cWW-cWW-cWW
  • History status: > 2 parents
66
67
  • IL_77263.2
IL_77263.2
  • Basepair signature: cWW-tSS-L-tSH-tHS-cWW
  • History status: Exact match
  • Name: Kink-turn from U4
116
68
  • IL_95652.5
IL_95652.5
  • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW
  • History status: Updated, 1 parent
  • Name: SSU Helix 27 (h27) IL Sarcin-Ricin motif
146
69
  • IL_40053.1
IL_40053.1
  • Basepair signature: cWW-tWW-L-tWW-tWH-cWW
  • History status: New id, 1 parent
126
70
  • IL_32261.3
IL_32261.3
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 89 (H89) IL2
96
71
  • IL_67399.1
IL_67399.1
  • Basepair signature: cWW-L-R-cWW-cWW
  • History status: New id, 2 parents
  • Name: REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
86
72
  • IL_31772.1
IL_31772.1
  • Basepair signature: cWW-L-R-cWW-cWW-cWW-cWW
  • History status: New id, 2 parents
  • Name: SRP Loop E-like motif | SSU Helix (23) h23 IL1
126
73
  • IL_86694.1
IL_86694.1
  • Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW
  • History status: New id, 1 parent
  • Name: SSU Helix 8 (h8) IL E.c. and Yeast
145
74
  • IL_71229.2
IL_71229.2
  • Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW
  • History status: Updated, 1 parent
165
75
  • IL_10554.1
IL_10554.1
  • Basepair signature: cWW-L-R-R-L-L-tHS-tSS-tSS-R-cWW
  • History status: New id, 1 parent
  • Name: SSU Helix 23 (h23) Kink-turn T. thermophilus
155
76
  • IL_98421.7
IL_98421.7
  • Basepair signature: cWW-tHH-L-L-cWW
  • History status: Updated, 1 parent
  • Name: SSU Helix 12 (h12) IL | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1
75
77
  • IL_15702.1
IL_15702.1
  • Basepair signature: cWW-R-tSS-tWW-tWW-cWW
  • History status: New id, 1 parent
145
78
  • IL_52024.1
IL_52024.1
  • Basepair signature: cWW-cWW-tHS-cWW
  • History status: New id, 2 parents
85
79
  • IL_72062.1
IL_72062.1
  • Basepair signature: cWW-cSW-L-R-cWW
  • History status: > 2 parents
85
80
  • IL_85010.1
IL_85010.1
  • Basepair signature: cWW-L-cSH-cWW
  • History status: > 2 parents
  • Name: 23S H91 IL | Single-Base Intercalation Site
65
81
  • IL_55114.3
IL_55114.3
  • Basepair signature: cWW-L-R-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Double S-turn motif | tHS tHH bulge with S-turn | Double S-turn motif
95
82
  • IL_99363.1
IL_99363.1
  • Basepair signature: cWW-L-L-tSS-cWW
  • History status: New id, 1 parent
95
83
  • IL_39980.2
IL_39980.2
  • Basepair signature: cWW-L-cSH-cWW
  • History status: Exact match
85
84
  • IL_37053.3
IL_37053.3
  • Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW
  • History status: Updated, 1 parent
  • Name: Kink-turn from 23S H58
135
85
  • IL_37688.1
IL_37688.1
  • Basepair signature: cWW-L-R-cWW
  • History status: New id, 2 parents
  • Name: Stacked bases not quite making a basepair.
65
86
  • IL_59276.1
IL_59276.1
  • Basepair signature: cWW-cSH-tWH-cSH-tWH-cSH-cWS-cWW
  • History status: New id, 2 parents
105
87
  • IL_04397.2
IL_04397.2
  • Basepair signature: cWW-tWH-L-tHW-cSH-cWW
  • History status: Updated, 1 parent
125
88
  • IL_34363.3
IL_34363.3
  • Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-R-R-L-cWW
  • History status: Exact match
  • Name: Kink-turn from 23S H42
145
89
  • IL_37197.3
IL_37197.3
  • Basepair signature: cWW-L-L-L-tHS-cWW-cWW
  • History status: Updated, 1 parent
114
90
  • IL_61513.1
IL_61513.1
  • Basepair signature: cWW-cWW
  • History status: New id, 2 parents
  • Name: One or more bulged nucleotides
54
91
  • IL_94519.2
IL_94519.2
  • Basepair signature: cWW-tWH-tHH-tHS-cWW
  • History status: Updated, 1 parent
114
92
  • IL_32508.1
IL_32508.1
  • Basepair signature: cWW-L-L-cWW
  • History status: New id, 2 parents
  • Name: 23S H91 IL
64
93
  • IL_12211.3
IL_12211.3
  • Basepair signature: cWW-L-R-R-R-L-L-L-cWW-cWW
  • History status: Updated, 1 parent
134
94
  • IL_45593.1
IL_45593.1
  • Basepair signature: cWW-R-R-cWW
  • History status: New id, 2 parents
64
95
  • IL_26321.1
IL_26321.1
  • Basepair signature: cWW-tSH-R-tHS-L-bif-cWW
  • History status: New id, 1 parent
  • Name: LSU H58 IL2 H.m.
124
96
  • IL_83339.1
IL_83339.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
74
97
  • IL_48918.3
IL_48918.3
  • Basepair signature: cWW-tSH-tSH-tHS-tSS-R-cWW
  • History status: Exact match
  • Name: Kink-turn variant
134
98
  • IL_77076.3
IL_77076.3
  • Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-cWW
  • History status: Updated, 1 parent
184
99
  • IL_73281.1
IL_73281.1
  • Basepair signature: cWW-cWW-bif-R-cSH-tWH-tHS-cWW
  • History status: New id, 2 parents
  • Name: Sarcin-like with an intercalated basepair
144
100
  • IL_09530.3
IL_09530.3
  • Basepair signature: cWW-cWH-L-R-cWW
  • History status: Exact match
  • Name: Double S-turn motif
104
101
  • IL_87899.1
IL_87899.1
  • Basepair signature: cWW-R-cSH-tWH-tHS-cWW
  • History status: New id, 2 parents
  • Name: SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif
104
102
  • IL_00520.1
IL_00520.1
  • Basepair signature: cWW-L-R-R-R-L-L-cWW
  • History status: New id, no parents
104
103
  • IL_43727.1
IL_43727.1
  • Basepair signature: cWW-tSH-tWH-tHS-cWW
  • History status: > 2 parents
  • Name: tSH-inserted-tHS | tHS tHH bulge with S-turn | tSH-inserted-tHS
94
104
  • IL_39526.4
IL_39526.4
  • Basepair signature: cWW-L-L-L-L-L-cWW
  • History status: Exact match
94
105
  • IL_16166.5
IL_16166.5
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
  • Name: 23S H91 IL
54
106
  • IL_74876.3
IL_74876.3
  • Basepair signature: cWW-tWH-L-R-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
104
107
  • IL_62615.1
IL_62615.1
  • Basepair signature: cWW-L-cWS-cWW
  • History status: New id, 2 parents
  • Name: cWS plus stacked base
74
108
  • IL_50787.1
IL_50787.1
  • Basepair signature: cWW-tWH-tHS-cWW
  • History status: New id, 1 parent
  • Name: tSH-tHW-bulge
94
109
  • IL_13023.1
IL_13023.1
  • Basepair signature: cWW-L-R-tSH-tWH-tHW-L-R-cWW-cWW
  • History status: New id, 1 parent
144
110
  • IL_69536.4
IL_69536.4
  • Basepair signature: cWW-tSH-R-R-cWW
  • History status: Updated, 1 parent
  • Name: LSU Helix 96 (H96) IL2
104
111
  • IL_19268.1
IL_19268.1
  • Basepair signature: cWW-L-R-cWW
  • History status: New id, 1 parent
73
112
  • IL_70089.1
IL_70089.1
  • Basepair signature: cWW-L-R-R-cWW-cWW
  • History status: Exact match
103
113
  • IL_45592.2
IL_45592.2
  • Basepair signature: cWW-L-R-R-cWW
  • History status: Updated, 1 parent
  • Name: 23S H91 IL
103
114
  • IL_01827.1
IL_01827.1
  • Basepair signature: cWW-R-cWW-cWH-L-L-cWW
  • History status: New id, 1 parent
  • Name: Base triple, intercalated pair, and bulged bases making long-range interactions.
93
115
  • IL_62499.10
IL_62499.10
  • Basepair signature: cWW-R-cWW
  • History status: Updated, 2 parents
  • Name: 23S H91 IL
63
116
  • IL_79398.1
IL_79398.1
  • Basepair signature: cWW-L-R-cWW
  • History status: New id, 2 parents
  • Name: cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
63
117
  • IL_14081.1
IL_14081.1
  • Basepair signature: cWW-L-R-R-cWW
  • History status: New id, 2 parents
  • Name: Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW | Leadzyme Motif. LSU H101 IL2. SSU Decoding site. | tSH-inserted
73
118
  • IL_21639.2
IL_21639.2
  • Basepair signature: cWW-L-tWH-R-R-R-cWW
  • History status: Updated, 1 parent
93
119
  • IL_94403.6
IL_94403.6
  • Basepair signature: cWW-L-L-tWH-L-L-L-cWW
  • History status: Exact match
  • Name: LSU H77
123
120
  • IL_82563.1
IL_82563.1
  • Basepair signature: cWW-R-tWH-R-R-R-cWW
  • History status: Exact match
  • Name: Thi-box riboswitch T-loop
103
121
  • IL_34628.2
IL_34628.2
  • Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn
133
122
  • IL_43946.1
IL_43946.1
  • Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW
  • History status: Exact match
123
123
  • IL_17204.2
IL_17204.2
  • Basepair signature: cWW-L-R-R-R-L-cWW
  • History status: Updated, 2 parents
103
124
  • IL_48070.1
IL_48070.1
  • Basepair signature: cWW-tHW-cSW-tSW-cWW
  • History status: New id, 1 parent
  • Name: C-loop
83
125
  • IL_82600.1
IL_82600.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: New id, 2 parents
  • Name: cWW AG or UU | cWH basepair with syn base | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif
83
126
  • IL_37914.2
IL_37914.2
  • Basepair signature: cWW-cWW-tHW-cSW-tSW-cWW
  • History status: Updated, 1 parent
113
127
  • IL_80494.4
IL_80494.4
  • Basepair signature: cWW-tWH-L-R-tHS-bif-cWW
  • History status: Updated, 1 parent
  • Name: LSU H58 IL2 H.m.
123
128
  • IL_91102.1
IL_91102.1
  • Basepair signature: cWW-L-R-R-cWW-cWW
  • History status: New id, 1 parent
93
129
  • IL_74163.1
IL_74163.1
  • Basepair signature: cWW-L-cWS-cWW
  • History status: New id, 1 parent
  • Name: cWS making long-range triple
83
130
  • IL_24955.1
IL_24955.1
  • Basepair signature: cWW-L-R-cWW
  • History status: New id, 2 parents
63
131
  • IL_22025.1
IL_22025.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: New id, 1 parent
103
132
  • IL_59563.2
IL_59563.2
  • Basepair signature: cWW-tSH-tSW-tHH-cSH-tWH-tHS-cWW
  • History status: Updated, 1 parent
  • Name: Sarcin-ricin motif with syn G
153
133
  • IL_63917.1
IL_63917.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: New id, 1 parent
83
134
  • IL_98073.2
IL_98073.2
  • Basepair signature: cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
  • History status: Updated, 1 parent
  • Name: Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11.
173
135
  • IL_90735.2
IL_90735.2
  • Basepair signature: cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW
  • History status: Updated, 1 parent
173
136
  • IL_40892.2
IL_40892.2
  • Basepair signature: cWW-cWS-L-L-cWW
  • History status: Exact match
113
137
  • IL_62504.1
IL_62504.1
  • Basepair signature: cWW-tSH-tSH-L-R-L-cWW
  • History status: New id, 2 parents
  • Name: Triple Sheared with unpaired, inserted A
113
138
  • IL_67005.1
IL_67005.1
  • Basepair signature: cWW-R-R-cWW
  • History status: New id, 1 parent
72
139
  • IL_98172.1
IL_98172.1
  • Basepair signature: cWW-L-R-R-L-L-cSS-L-cWW-cWW
  • History status: Exact match
172
140
  • IL_76095.3
IL_76095.3
  • Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-cWW-cWW
  • History status: Exact match
  • Name: Motif from Hairpin Ribozyme
202
141
  • IL_92422.1
IL_92422.1
  • Basepair signature: cWW-L-L-L-L-cWW
  • History status: Exact match
112
142
  • IL_52940.1
IL_52940.1
  • Basepair signature: cWW-L-R-R-R-R-L-L-L-tWW-cWW
  • History status: Exact match
142
143
  • IL_64894.1
IL_64894.1
  • Basepair signature: cWW-R-R-cWW
  • History status: New id, 1 parent
  • Name: 23S H91 IL | Single-Base Intercalation Site
62
144
  • IL_44092.1
IL_44092.1
  • Basepair signature: cWW-L-L-L-cWW
  • History status: New id, 1 parent
82
145
  • IL_24583.1
IL_24583.1
  • Basepair signature: cWW-tSS-L-R-R-R-R-R-R-R-R-R-L-cWW
  • History status: New id, no parents
182
146
  • IL_40041.1
IL_40041.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
62
147
  • IL_73348.1
IL_73348.1
  • Basepair signature: cWW-tSH-L-R-tHS-cWW
  • History status: New id, 1 parent
  • Name: Triple sheared (tSH-tHS-tHS) no inserted bases
102
148
  • IL_38488.1
IL_38488.1
  • Basepair signature: cWW-L-R-R-L-L-cWW
  • History status: New id, 2 parents
92
149
  • IL_39439.1
IL_39439.1
  • Basepair signature: cWW-L-R-R-R-L-L-cWW
  • History status: Exact match
102
150
  • IL_91942.1
IL_91942.1
  • Basepair signature: cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW
  • History status: New id, no parents
162
151
  • IL_68945.1
IL_68945.1
  • Basepair signature: cWW-L-R-R-R-R-R-L-L-cWW
  • History status: New id, 1 parent
122
152
  • IL_74462.1
IL_74462.1
  • Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW
  • History status: New id, 1 parent
232
153
  • IL_78744.1
IL_78744.1
  • Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW
  • History status: Exact match
  • Name: Quadruple Sheared (tSH-tSH-tHS-tHS)
122
154
  • IL_92205.1
IL_92205.1
  • Basepair signature: cWW-cWW-R-cWW
  • History status: New id, 1 parent
  • Name: cWW AG or water inserted cWW Y-Y. | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
72
155
  • IL_00697.1
IL_00697.1
  • Basepair signature: cWW-L-R-R-L-L-L-L-cWW
  • History status: New id, 1 parent
112
156
  • IL_68034.1
IL_68034.1
  • Basepair signature: cWW-R-R-cWW
  • History status: New id, 2 parents
72
157
  • IL_70401.1
IL_70401.1
  • Basepair signature: cWW-L-L-tWW-L-L-L-cWW
  • History status: Exact match
112
158
  • IL_06675.1
IL_06675.1
  • Basepair signature: cWW-tSH-L-R-R-R-cWW
  • History status: New id, 2 parents
  • Name: Triple Sheared with unpaired, inserted A
102
159
  • IL_09882.1
IL_09882.1
  • Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW
  • History status: Exact match
122
160
  • IL_86033.1
IL_86033.1
  • Basepair signature: cWW-L-R-R-R-R-R-L-L-L-L-cWW
  • History status: New id, no parents
142
161
  • IL_10119.1
IL_10119.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: New id, 1 parent
82
162
  • IL_16330.1
IL_16330.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
282
163
  • IL_33842.1
IL_33842.1
  • Basepair signature: cWW-cSH-L-cWS-cWW
  • History status: Exact match
92
164
  • IL_31707.1
IL_31707.1
  • Basepair signature: cWW-L-L-L-cWW-L-bif-cWW
  • History status: Exact match
  • Name: Vitamin B12 aptamer
112
165
  • IL_88416.1
IL_88416.1
  • Basepair signature: cWW-cWW-cSH-cWW
  • History status: New id, 1 parent
72
166
  • IL_06413.1
IL_06413.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
  • Name: LSU Helix 89 (H89) IL2 | SSU Helix 12 (h12) IL | LSU Eukaryal Helix 96 (H96) IL1
82
167
  • IL_50521.1
IL_50521.1
  • Basepair signature: cWW-tSH-cWH-tWH-tSS-tHW-L-cWW
  • History status: Exact match
152
168
  • IL_28058.1
IL_28058.1
  • Basepair signature: cWW-tSS-L-L-cSS-tWH-tSW-cWS-cSS-tWS-cSH-cWH-cHW-cSH-R-R-cWW
  • History status: New id, 1 parent
252
169
  • IL_94799.1
IL_94799.1
  • Basepair signature: cWW-L-R-R-L-L-cWW
  • History status: New id, 1 parent
  • Name: tHS tHH bulge with S-turn
92
170
  • IL_94744.1
IL_94744.1
  • Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with extra cWW GA pair
172
171
  • IL_87548.1
IL_87548.1
  • Basepair signature: cWW-tSH-tHW-L-cSH-R-cWW
  • History status: Exact match
112
172
  • IL_44977.1
IL_44977.1
  • Basepair signature: cWW-cWW-L-R-R-L-cWW-cWW
  • History status: New id, 2 parents
  • Name: LSU H58 IL2 H.m. | SSU Helix (23) h23 IL1
122
173
  • IL_69668.1
IL_69668.1
  • Basepair signature: cWW-cWW-L-R-R-tHW-bif-cWW
  • History status: New id, 1 parent
132
174
  • IL_21495.1
IL_21495.1
  • Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW
  • History status: Exact match
152
175
  • IL_07300.3
IL_07300.3
  • Basepair signature: cWW-L-L-L-cWW-cWW
  • History status: Updated, 1 parent
92
176
  • IL_35558.1
IL_35558.1
  • Basepair signature: cWW-tSH-L-R-R-L-L-cWW
  • History status: New id, 1 parent
112
177
  • IL_28028.1
IL_28028.1
  • Basepair signature: cWW-L-R-R-L-cWW-cWW
  • History status: New id, 1 parent
102
178
  • IL_06692.1
IL_06692.1
  • Basepair signature: cWW-tSS-L-cSS-R-L-cWW
  • History status: New id, 2 parents
132
179
  • IL_39175.1
IL_39175.1
  • Basepair signature: cWW-R-R-R-R-R-cWW
  • History status: Exact match
92
180
  • IL_43363.1
IL_43363.1
  • Basepair signature: cWW-L-R-R-L-L-L-cWW
  • History status: New id, 2 parents
122
181
  • IL_03362.1
IL_03362.1
  • Basepair signature: cWW-tSS-tWW-L-tSH-R-R-cWW
  • History status: Exact match
132
182
  • IL_65137.1
IL_65137.1
  • Basepair signature: cWW-L-cSS-tWH-tHW-L-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn like motif in Group I Intron
132
183
  • IL_79636.1
IL_79636.1
  • Basepair signature: cWW-L-R-R-R-R-R-L-cWW
  • History status: New id, 1 parent
  • Name: Kink-turn
132
184
  • IL_28003.2
IL_28003.2
  • Basepair signature: cWW-cSH-tHW-cWW
  • History status: Exact match
92
185
  • IL_21062.1
IL_21062.1
  • Basepair signature: cWW-cWW-L-R-cSH-tWH-tHS-cWW
  • History status: New id, 1 parent
  • Name: Sarcin-ricin motif with cWW UU instead of tSH basepair.
132
186
  • IL_51576.1
IL_51576.1
  • Basepair signature: cWW-cWW-L-R-R-L-tHS-L-R-R-R-L-cWW
  • History status: New id, 1 parent
182
187
  • IL_67024.1
IL_67024.1
  • Basepair signature: cWW-R-R-R-tSW-L-cWW
  • History status: Exact match
112
188
  • IL_23414.1
IL_23414.1
  • Basepair signature: cWW-L-R-R-R-cSH-R-bif-tWH-R-R-R-R-R-L-cWW
  • History status: Exact match
212
189
  • IL_96446.1
IL_96446.1
  • Basepair signature: cWW-R-R-tWH-L-R-cWW
  • History status: Exact match
112
190
  • IL_46435.1
IL_46435.1
  • Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW
  • History status: Exact match
132
191
  • IL_06527.1
IL_06527.1
  • Basepair signature: cWW-L-R-R-L-cWW-L-cWW
  • History status: New id, 1 parent
112
192
  • IL_44847.1
IL_44847.1
  • Basepair signature: cWW-cWW-L-R-L-L-L-cWW
  • History status: New id, no parents
112
193
  • IL_83250.1
IL_83250.1
  • Basepair signature: cWW-tWH-R-R-R-cSH-cWW-cWW
  • History status: Exact match
  • Name: 16S h40 3WJ T.th.
111
194
  • IL_57334.1
IL_57334.1
  • Basepair signature: cWW-L-R-L-cWW-cWW
  • History status: New id, no parents
111
195
  • IL_33217.1
IL_33217.1
  • Basepair signature: cWW-cSH-L-cSW-cWW-R-R-cWW
  • History status: New id, 1 parent
111
196
  • IL_81587.1
IL_81587.1
  • Basepair signature: cWW-cWW-L-R-R-L-tSH-tHS-tSS-tSS-R-cWW
  • History status: New id, no parents
171
197
  • IL_65681.1
IL_65681.1
  • Basepair signature: cWW-cSW-L-R-cWW
  • History status: Exact match
81
198
  • IL_63723.1
IL_63723.1
  • Basepair signature: cWW-L-R-L-tHS-cWW
  • History status: New id, no parents
91
199
  • IL_09333.1
IL_09333.1
  • Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW
  • History status: Exact match
  • Name: SSU Helix 8 (h8) IL T. thermophilus
131
200
  • IL_63366.1
IL_63366.1
  • Basepair signature: cWW-L-R-R-R-L-L-cSS-L-cWH-cWS-cWW
  • History status: New id, no parents
231
201
  • IL_89794.1
IL_89794.1
  • Basepair signature: cWW-tSH-tSH-tSS-tSS-R-cWW
  • History status: Exact match
141
202
  • IL_75415.1
IL_75415.1
  • Basepair signature: cWW-L-L-L-L-L-L-cWW
  • History status: Exact match
  • Name: Pseudo-knot forming internal loop
101
203
  • IL_40527.1
IL_40527.1
  • Basepair signature: cWW-L-R-tSS-L-tSH-L-R-L-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn
161
204
  • IL_27668.1
IL_27668.1
  • Basepair signature: cWW-L-L-L-L-L-tHS-cWW
  • History status: Exact match
121
205
  • IL_74400.1
IL_74400.1
  • Basepair signature: cWW-cSH-L-cWW
  • History status: New id, 1 parent
101
206
  • IL_81512.1
IL_81512.1
  • Basepair signature: cWW-cWW-L-R-R-tHW-L-R-tHH-cWW
  • History status: New id, no parents
171
207
  • IL_82650.1
IL_82650.1
  • Basepair signature: cWW-cWS-tSH-tHS-L-R-L-cWW
  • History status: Exact match
131
208
  • IL_11778.1
IL_11778.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
81
209
  • IL_05221.1
IL_05221.1
  • Basepair signature: cWW-cWW-bif-tHW-cWH-tSW-cSH-cWH-cSH-tHS-cWW
  • History status: Exact match
171
210
  • IL_00346.1
IL_00346.1
  • Basepair signature: cWW-L-R-R-R-L-L-cWW-L-R-R-R-R-L-cWW
  • History status: New id, no parents
211
211
  • IL_25420.1
IL_25420.1
  • Basepair signature: cWW-tSH-tWH-tWH-L-R-R-L-L-tSH-cWW
  • History status: Exact match
161
212
  • IL_34816.1
IL_34816.1
  • Basepair signature: cWW-L-R-R-cWS-cSW-R-cWW
  • History status: New id, no parents
131
213
  • IL_06468.1
IL_06468.1
  • Basepair signature: cWW-tWH-R-R-R-cWW-cWW
  • History status: Exact match
  • Name: 16S h40 3WJ E.c.
111
214
  • IL_58270.1
IL_58270.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-R-R-R-R-R-R-R-R-cWW
  • History status: Exact match
191
215
  • IL_91061.1
IL_91061.1
  • Basepair signature: cWW-tSH-R-tHH-tHS-cWW
  • History status: New id, no parents
121
216
  • IL_21254.1
IL_21254.1
  • Basepair signature: cWW-tWH-cWW-tHS-tSS-R-R-cWW
  • History status: Exact match
  • Name: SSU Helix 11 (h11) IL Kink-turn T. thermophilus
141
217
  • IL_22601.1
IL_22601.1
  • Basepair signature: cWW-cSH-L-R-R-L-L-cWW
  • History status: New id, no parents
111
218
  • IL_99784.1
IL_99784.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
81
219
  • IL_41139.1
IL_41139.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
81
220
  • IL_03030.1
IL_03030.1
  • Basepair signature: cWW-R-bif-tHW-tHS-cWW
  • History status: New id, 1 parent
  • Name: tSH-inserted-tHS
101
221
  • IL_80714.1
IL_80714.1
  • Basepair signature: cWW-tSH-L-R-R-L-L-L-cWW
  • History status: Exact match
121
222
  • IL_55210.1
IL_55210.1
  • Basepair signature: cWW-R-R-cWW
  • History status: New id, 1 parent
  • Name: 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | 23S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | LSU H77 | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
61
223
  • IL_73656.1
IL_73656.1
  • Basepair signature: cWW-L-R-R-R-L-L-L-L-cWW-cWW
  • History status: Exact match
151
224
  • IL_34548.1
IL_34548.1
  • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-R-L-cWW
  • History status: New id, no parents
161
225
  • IL_06808.1
IL_06808.1
  • Basepair signature: cWW-tSH-tHS-cWW
  • History status: Exact match
  • Name: Double sheared (tSH-tSH) one bulged base.
91
226
  • IL_07252.1
IL_07252.1
  • Basepair signature: cWW-cWH-L-R-cWW
  • History status: Exact match
81
227
  • IL_57977.1
IL_57977.1
  • Basepair signature: cWW-tSH-L-R-L-tHS-cWW
  • History status: Exact match
111
228
  • IL_47687.1
IL_47687.1
  • Basepair signature: cWW-tWH-tWH-tWH-L-R-L-tWW-cWW
  • History status: Exact match
141
229
  • IL_77862.1
IL_77862.1
  • Basepair signature: cWW-L-R-R-L-cWW
  • History status: New id, no parents
81
230
  • IL_02957.1
IL_02957.1
  • Basepair signature: cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW
  • History status: Exact match
261
231
  • IL_23448.1
IL_23448.1
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
61
232
  • IL_96591.1
IL_96591.1
  • Basepair signature: cWW-L-cWW
  • History status: New id, no parents
91
233
  • IL_15813.1
IL_15813.1
  • Basepair signature: cWW-L-L-L-L-L-cSW-cSW-cWW-bif-cSW-R-cWW
  • History status: New id, no parents
151
234
  • IL_91078.1
IL_91078.1
  • Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW
  • History status: Exact match
141
235
  • IL_91089.1
IL_91089.1
  • Basepair signature: cWW-L-L-L-L-cWW
  • History status: Exact match
81
236
  • IL_92986.1
IL_92986.1
  • Basepair signature: cWW-tSH-L-cWW
  • History status: New id, 1 parent
81
237
  • IL_39296.1
IL_39296.1
  • Basepair signature: cWW-cWW-R-R-tWS-L-L-L-L-cWW-L-L-L-L-L-L-L-L-cWH-L-L-L-L-L-L-L-L-cWW
  • History status: New id, no parents
371
238
  • IL_91379.1
IL_91379.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-L-cWW
  • History status: Exact match
121
239
  • IL_98924.1
IL_98924.1
  • Basepair signature: cWW-L-L-L-cWW-cWW
  • History status: Exact match
101
240
  • IL_47702.1
IL_47702.1
  • Basepair signature: cWW-R-tWH-L-R-R-R-R-L-L-cWW
  • History status: Exact match
161
241
  • IL_27640.1
IL_27640.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-L-tHS-cWW
  • History status: Exact match
151
242
  • IL_14240.1
IL_14240.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-L-L-cWW
  • History status: New id, no parents
151
243
  • IL_78984.1
IL_78984.1
  • Basepair signature: cWW-tSH-R-tHS-cHW-cWW-cWW-cWW
  • History status: New id, no parents
151
244
  • IL_91044.1
IL_91044.1
  • Basepair signature: cWW-L-R-tHW-cWW
  • History status: Exact match
111
245
  • IL_84995.1
IL_84995.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: New id, no parents
71
246
  • IL_06177.1
IL_06177.1
  • Basepair signature: cWW-L-R-cWW
  • History status: Exact match
  • Name: cWW AG or UU
61
247
  • IL_11989.1
IL_11989.1
  • Basepair signature: cWW-L-L-L-cWW-cWW
  • History status: New id, no parents
81
248
  • IL_01562.1
IL_01562.1
  • Basepair signature: cWW-tSH-L-R-R-L-L-cWW
  • History status: New id, no parents
121
249
  • IL_52958.1
IL_52958.1
  • Basepair signature: cWW-L-R-R-L-L-cWW
  • History status: Exact match
101
250
  • IL_86336.1
IL_86336.1
  • Basepair signature: cWW-L-R-L-L-L-cWW
  • History status: Exact match
101
251
  • IL_37970.1
IL_37970.1
  • Basepair signature: cWW-R-tWH-tHS-cWW
  • History status: New id, 1 parent
  • Name: tHS tHH bulge with S-turn | tSH-inserted-tHS
101
252
  • IL_52610.1
IL_52610.1
  • Basepair signature: cWW-tSS-tSH-L-L-L-L-cWW-L-L-L-L-L-L-L-L-cSS-L-L-L-cSW-cWW-L-cWW-R-tSH-R-R-R-R
  • History status: Exact match
371
253
  • IL_25808.1
IL_25808.1
  • Basepair signature: cWW-L-L-L-cWW
  • History status: New id, 1 parent
71
254
  • IL_41516.1
IL_41516.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
101
255
  • IL_22731.1
IL_22731.1
  • Basepair signature: cWW-bif-cSW-L-R-R-L-cWW-cWW-cWW
  • History status: New id, no parents
141
256
  • IL_70069.1
IL_70069.1
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: New id, 1 parent
  • Name: tHS tHH bulge with S-turn
81
257
  • IL_23639.1
IL_23639.1
  • Basepair signature: cWW-tWH-tHS-L-cWW
  • History status: Exact match
  • Name: tWH-tHS-L-cWW
101
258
  • IL_02897.1
IL_02897.1
  • Basepair signature: cWW-L-R-cWW-L-L-tSW-L-cWW
  • History status: Exact match
  • Name: Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th.
161
259
  • IL_08588.1
IL_08588.1
  • Basepair signature: cWW-L-R-R-L-L-L-L-L-L-cWW
  • History status: New id, no parents
161
260
  • IL_40987.1
IL_40987.1
  • Basepair signature: cWW-R-cWW
  • History status: New id, 1 parent
  • Name: 23S H91 IL | Single-Base Intercalation Site
51
261
  • IL_06847.1
IL_06847.1
  • Basepair signature: cWW-R-cSW-R-R-tHS-cWW
  • History status: Exact match
  • Name: Group II Intron IL
131
262
  • IL_90633.1
IL_90633.1
  • Basepair signature: cWW-R-R-R-tSW-L-L-cWW
  • History status: New id, no parents
111
263
  • IL_81956.1
IL_81956.1
  • Basepair signature: cWW-cWW-cSS-cWW
  • History status: New id, no parents
81
264
  • IL_11268.1
IL_11268.1
  • Basepair signature: cWW-L-R-R-R-R-R-L-L-L-L-tWW-cWW
  • History status: New id, no parents
181
265
  • IL_70102.1
IL_70102.1
  • Basepair signature: cWW-R-cWH-L-L-L-cWW
  • History status: New id, 1 parent
91
266
  • IL_87523.1
IL_87523.1
  • Basepair signature: cWW-R-R-R-R-tHS-cWW
  • History status: Exact match
111
267
  • IL_87394.1
IL_87394.1
  • Basepair signature: cWW-L-R-R-R-R-R-cWW
  • History status: Exact match
101
268
  • IL_02835.1
IL_02835.1
  • Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
131
269
  • IL_27713.1
IL_27713.1
  • Basepair signature: cWW-tHS-cWW-L-R-R-R-L-L-cWW
  • History status: New id, no parents
141
270
  • IL_86060.1
IL_86060.1
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
61
271
  • IL_25926.1
IL_25926.1
  • Basepair signature: cWW-L-R-cWW-cWW-L-R-R-R-R-L-L-L-L-cWW
  • History status: Exact match
191
272
  • IL_09430.1
IL_09430.1
  • Basepair signature: cWW-L-R-R-R-R-L-L-cWS-L-cWW
  • History status: New id, no parents
191
273
  • IL_79910.1
IL_79910.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
71
274
  • IL_93855.1
IL_93855.1
  • Basepair signature: cWW-L-R-L-L-L-L-L-cWW
  • History status: New id, no parents
121
275
  • IL_76263.1
IL_76263.1
  • Basepair signature: cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW
  • History status: Exact match
191
276
  • IL_48268.1
IL_48268.1
  • Basepair signature: cWW-R-cWW
  • History status: New id, no parents
71
277
  • IL_55649.1
IL_55649.1
  • Basepair signature: cWW-tWH-L-R-cWW
  • History status: Exact match
91
278
  • IL_06306.1
IL_06306.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-R-L-cWW
  • History status: Exact match
141
279
  • IL_21077.1
IL_21077.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
101
280
  • IL_42891.1
IL_42891.1
  • Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW
  • History status: Exact match
161
281
  • IL_40845.1
IL_40845.1
  • Basepair signature: cWW-cSW-cSH-R-cWW
  • History status: Exact match
81
282
  • IL_02257.1
IL_02257.1
  • Basepair signature: cWW-tSH-tHH-tHS-cWW
  • History status: Exact match
111
283
  • IL_41027.1
IL_41027.1
  • Basepair signature: cWW-bif-R-cSH-tWH-tHS-cWW
  • History status: Exact match
121
284
  • IL_18506.1
IL_18506.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-cSH-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
  • History status: New id, no parents
281
285
  • IL_22909.1
IL_22909.1
  • Basepair signature: cWW-L-cSH-R-R-R-cWW
  • History status: Exact match
91
286
  • IL_26971.1
IL_26971.1
  • Basepair signature: cWW-tSH-L-R-R-R-L-cWW
  • History status: Exact match
111
287
  • IL_70529.1
IL_70529.1
  • Basepair signature: cWW-cWW-L-R-cWW-L-R-R-R-L-L-tHS-R-R-cWW
  • History status: Exact match
211
288
  • IL_05513.1
IL_05513.1
  • Basepair signature: cWW-L-L-L-tWH-L-L-L-cWW
  • History status: Exact match
121
289
  • IL_86059.1
IL_86059.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
71
290
  • IL_36006.1
IL_36006.1
  • Basepair signature: cWW-cWW-L-cWW
  • History status: Exact match
81
291
  • IL_10628.1
IL_10628.1
  • Basepair signature: cWW-cWW-L-R-tSS-tWH-L-tWS-R-bif-R-R-R-R-R-R-R-cWW
  • History status: New id, no parents
241
292
  • IL_77014.1
IL_77014.1
  • Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW
  • History status: Exact match
111
293
  • IL_82601.1
IL_82601.1
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: Tandem cWW water-inserted CU pairs
81
294
  • IL_77296.1
IL_77296.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW
  • History status: Exact match
151
295
  • IL_85975.1
IL_85975.1
  • Basepair signature: cWW-L-R-R-R-R-R-L-L-cWW
  • History status: New id, no parents
161
296
  • IL_72055.1
IL_72055.1
  • Basepair signature: cWW-L-R-R-R-R-L-cWW-cWW-cWW-cWW-R-bif-L-cWW
  • History status: New id, no parents
221
297
  • IL_29058.1
IL_29058.1
  • Basepair signature: cWW-L-R-R-R-R-R-L-L-L-L-cWW
  • History status: New id, no parents
161
298
  • IL_92957.1
IL_92957.1
  • Basepair signature: cWW-cHW-tHW-tHW-tHW-bif-cWW
  • History status: New id, 1 parent
161
299
  • IL_69482.1
IL_69482.1
  • Basepair signature: cWW-L-R-cWW
  • History status: New id, 1 parent
91
300
  • IL_45432.1
IL_45432.1
  • Basepair signature: cWW-tSH-tHW-tWH-L-R-R-L-cWW
  • History status: Exact match
161
301
  • IL_87168.1
IL_87168.1
  • Basepair signature: cWW-tSS-L-tSH-tSS-L-cSH-R-R-L-bif-L-cWW
  • History status: New id, no parents
181
302
  • IL_66407.1
IL_66407.1
  • Basepair signature: cWW-L-R-R-L-tWH-L-cWW
  • History status: New id, no parents
151
303
  • IL_26868.1
IL_26868.1
  • Basepair signature: cWW-tSH-tHW-tWW-cWW
  • History status: Exact match
111
304
  • IL_27243.1
IL_27243.1
  • Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW
  • History status: Exact match
151
305
  • IL_48036.1
IL_48036.1
  • Basepair signature: cWW-L-R-L-L-L-cWW
  • History status: Exact match
101
306
  • IL_40364.1
IL_40364.1
  • Basepair signature: cWW-tWW-L-R-R-L-L-L-L-L-L-L-L-L-L-L-L-L-cWW
  • History status: Exact match
261
307
  • IL_66775.1
IL_66775.1
  • Basepair signature: cWW-L-R-L-cWW-R-cWW
  • History status: New id, no parents
111
308
  • IL_81280.1
IL_81280.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
  • History status: New id, no parents
281
309
  • IL_75328.1
IL_75328.1
  • Basepair signature: cWW-L-R-R-R-L-L-cSS-tSS-cWW
  • History status: Exact match
141
310
  • IL_17682.1
IL_17682.1
  • Basepair signature: cWW-L-R-tSH-tHW-cSH-tHH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif from Eukaryal LSU Helix 11
171
311
  • IL_03282.1
IL_03282.1
  • Basepair signature: cWW-tHW-tHS-cWW-cWW
  • History status: Exact match
101
312
  • IL_63952.1
IL_63952.1
  • Basepair signature: cWW-L-R-R-tHW-tHW-L-R-cWW
  • History status: Exact match
131
313
  • IL_68827.1
IL_68827.1
  • Basepair signature: cWW-tSH-tHH-R-R-R-cWW
  • History status: Exact match
  • Name: Reverse Kink-Turn
111
314
  • IL_94958.1
IL_94958.1
  • Basepair signature: cWW-L-cWH-R-R-tHW-L-cWS-cWW
  • History status: New id, no parents
141
315
  • IL_62008.1
IL_62008.1
  • Basepair signature: cWW-tSS-R-bif-L-L-L-L-L-cHW-bif-L-cWW
  • History status: New id, no parents
191
316
  • IL_97803.1
IL_97803.1
  • Basepair signature: cWW-R-R-R-cWW-tSS-cWW-cWW-bif-L-L-L-L-L-cWW-cSS-cSS-L-L-cWW
  • History status: New id, no parents
261
317
  • IL_28644.1
IL_28644.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
61
318
  • IL_41371.1
IL_41371.1
  • Basepair signature: cWW-L-R-cWW-bif-tHW-cWH-cSH-cWH-L-cSH-R-cWW
  • History status: New id, no parents
191
319
  • IL_62296.1
IL_62296.1
  • Basepair signature: cWW-tSS-cSS-cWW-L-R-R-L-L-L-cWW
  • History status: Exact match
151
320
  • IL_85707.1
IL_85707.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: New id, no parents
101
321
  • IL_11302.1
IL_11302.1
  • Basepair signature: cWW-L-R-R-tHW-L-cWW
  • History status: Exact match
101
322
  • IL_98655.1
IL_98655.1
  • Basepair signature: cWW-L-cHW-L-L-tHH-tSW-L-cWW
  • History status: Exact match
  • Name: Part of H71 Junction in 26S rRNA from Yeast
161
323
  • IL_35267.1
IL_35267.1
  • Basepair signature: cWW-bif-L-cWH-cWS-cWW-R-R-R-cWW
  • History status: Exact match
181
324
  • IL_03110.1
IL_03110.1
  • Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW
  • History status: Exact match
131
325
  • IL_88263.1
IL_88263.1
  • Basepair signature: cWW-L-R-R-R-bif-R-cWW-L-cWW
  • History status: New id, no parents
151
326
  • IL_99937.1
IL_99937.1
  • Basepair signature: cWW-R-R-tWS-L-R-cWW
  • History status: Exact match
111
327
  • IL_15205.1
IL_15205.1
  • Basepair signature: cWW-cWW-L-cSW-L-tHS-cWW
  • History status: Exact match
131
328
  • IL_94973.1
IL_94973.1
  • Basepair signature: cWW-L-R-L-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-Ricin from Group II Intron with inserted base and poor modeling:
141
329
  • IL_45617.1
IL_45617.1
  • Basepair signature: cWW-L-R-R-cWW
  • History status: New id, 1 parent
71
330
  • IL_57625.1
IL_57625.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-L-L-L-L-L-cWW
  • History status: New id, no parents
171
331
  • IL_41215.1
IL_41215.1
  • Basepair signature: cWW-R-R-cWW
  • History status: New id, no parents
61
332
  • IL_80652.1
IL_80652.1
  • Basepair signature: cWW-R-cSH-tWH-tSH-tHS-cWW
  • History status: Exact match
141
333
  • IL_76024.1
IL_76024.1
  • Basepair signature: cWW-L-L-L-cWW
  • History status: New id, 1 parent
81
334
  • IL_22953.1
IL_22953.1
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
  • Name: Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | 16S h34 ILa : Part of larger motif | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75) | cWW AG or UU | Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
61
335
  • IL_85805.1
IL_85805.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
91
336
  • IL_88865.1
IL_88865.1
  • Basepair signature: cWW-L-cSH-L-cWW
  • History status: Exact match
91
337
  • IL_66744.1
IL_66744.1
  • Basepair signature: cWW-L-R-R-L-L-L-L-cWW-cWW
  • History status: Exact match
  • Name: SSU Helix 21 (h21) IL2 E.coli
141
338
  • IL_86981.1
IL_86981.1
  • Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.
151
339
  • IL_31006.1
IL_31006.1
  • Basepair signature: cWW-tSH-tHW-L-bif-cWW
  • History status: Exact match
  • Name: tSH-tHW-L-bif-cWW
121
340
  • IL_85510.1
IL_85510.1
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
111
341
  • IL_57285.1
IL_57285.1
  • Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW
  • History status: Exact match
131
342
  • IL_15219.1
IL_15219.1
  • Basepair signature: cWW-cWW-cWW-R-R-R-R-R-R-cSH-L-L-bif-cWW
  • History status: New id, no parents
201
343
  • IL_20608.1
IL_20608.1
  • Basepair signature: cWW-L-cSH-R-L-L-cWS-cWW-bif-cWW
  • History status: New id, no parents
171
344
  • IL_12507.1
IL_12507.1
  • Basepair signature: cWW-cSS-cSS-R-R-L-L-L-cWW
  • History status: Exact match
131
345
  • IL_31754.1
IL_31754.1
  • Basepair signature: cWW-cSW-tHW-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin H95 23S rRNA E.c.
131
346
  • IL_97842.1
IL_97842.1
  • Basepair signature: cWW-R-R-R-R-cWS-cWW-cWW-L-R-cWW
  • History status: Exact match
161
347
  • IL_00519.1
IL_00519.1
  • Basepair signature: cWW-L-cSW-cSW-cWW-cWW
  • History status: New id, 1 parent
  • Name: Triple sheared (tSH-tHS-tHS) no inserted bases
101
348
  • IL_08114.1
IL_08114.1
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
61
349
  • IL_03808.1
IL_03808.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-cWW
  • History status: Exact match
131
350
  • IL_84276.1
IL_84276.1
  • Basepair signature: cWW-L-tHS-cWW-R-R-cWW
  • History status: New id, no parents
141
351
  • IL_59934.1
IL_59934.1
  • Basepair signature: cWW-tSH-tWH-tHS-R-R-cWW
  • History status: Exact match
  • Name: SSU Helix 23 (h23) Kink-turn E. coli
131
352
  • IL_31160.1
IL_31160.1
  • Basepair signature: cWW-L-L-L-L-L-cWW
  • History status: New id, no parents
111
353
  • IL_15884.1
IL_15884.1
  • Basepair signature: cWW-L-L-cWW
  • History status: New id, 1 parent
61
354
  • IL_89463.1
IL_89463.1
  • Basepair signature: cWW-tSS-cSS-L-R-R-L-L-L-L-cWW
  • History status: Exact match
131
355
  • IL_51572.1
IL_51572.1
  • Basepair signature: cWW-R-R-R-R-R-R-tWS-R-R-R-R-R-R-R-R-R-R-R-R-cWW
  • History status: Exact match
241
356
  • IL_39324.1
IL_39324.1
  • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW
  • History status: Exact match
201
357
  • IL_41920.1
IL_41920.1
  • Basepair signature: cWW-L-R-R-L-L-L-cWW
  • History status: New id, no parents
111
358
  • IL_11529.1
IL_11529.1
  • Basepair signature: cWW-cWS-cWH-R-R-R-cWH-L-L-L-L-cWW
  • History status: New id, no parents
171
359
  • IL_62617.1
IL_62617.1
  • Basepair signature: cWW-L-tWH-R-R-L-cWW-cWW
  • History status: New id, no parents
121
360
  • IL_88367.1
IL_88367.1
  • Basepair signature: cWW-bif-R-cSH-tWH-tHS-L-R-tSH-cWW
  • History status: Exact match
151
361
  • IL_80505.1
IL_80505.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-cWW
  • History status: Exact match
111
362
  • IL_37347.1
IL_37347.1
  • Basepair signature: cWW-cHW-L-tHW-tHW-tHW-bif-cWW
  • History status: Exact match
161
363
  • IL_59907.1
IL_59907.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
281
364
  • IL_16921.1
IL_16921.1
  • Basepair signature: cWW-cSH-L-L-L-cWW-cWW
  • History status: Exact match
131



New id, no parents 57; New id, 1 parent 58; Exact match 143; Updated, 1 parent 49; New id, 2 parents 30; > 2 parents 18; Updated, 2 parents 9;