Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7ABZ_0011/1/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_7ABZ_0021/1/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_7ABZ_0031/1/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_7ABZ_0041/1/136:143No text annotation
Not in a motif group
geometric
HL_5TBW_012
HL_86373.2
HL_7ABZ_0051/1/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_7ABZ_0061/1/194:201No text annotation
Not in a motif group
homologous
HL_4WF9_006
HL_06192.2
HL_7ABZ_0071/1/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_7ABZ_0081/1/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_7ABZ_0091/1/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_7ABZ_0101/1/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_7ABZ_0111/1/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_7ABZ_0121/1/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_7ABZ_0131/1/410:417No text annotation
Not in a motif group
homologous
HL_7A0S_014
HL_96598.1
HL_7ABZ_0141/1/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.1
HL_7ABZ_0151/1/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.1
HL_7ABZ_0161/1/543:550No text annotation
Not in a motif group
HL_7ABZ_0171/1/566:575T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_4WF9_018
HL_89380.2
HL_7ABZ_0181/1/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_7ABZ_0191/1/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_7ABZ_0201/1/640:648No text annotation
Not in a motif group
geometric
HL_5J7L_012
HL_84085.2
HL_7ABZ_0211/1/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_7ABZ_0221/1/744:753No text annotation
Not in a motif group
homologous
HL_5J7L_155
NA
HL_7ABZ_0231/1/779:785No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_7ABZ_0241/1/826:831No text annotation
Not in a motif group
homologous
HL_4WF9_025
HL_64365.1
HL_7ABZ_0251/1/884:892No text annotation
Not in a motif group
geometric
HL_4V88_198
HL_56691.2
HL_7ABZ_0261/1/954:963No text annotation
Not in a motif group
homologous
HL_5J7L_159
NA
HL_7ABZ_0271/1/978:985No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_7ABZ_0281/1/1063:1076No text annotation
Not in a motif group
HL_7ABZ_0291/1/1092:1099No text annotation
Not in a motif group
homologous
HL_7RQB_030
NA
HL_7ABZ_0301/1/1171:1178No text annotation
Not in a motif group
HL_7ABZ_0311/1/1222:1227No text annotation
Not in a motif group
homologous
HL_7A0S_031
HL_87030.2
HL_7ABZ_0321/1/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_7ABZ_0331/1/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_7ABZ_0341/1/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_7ABZ_0351/1/1389:1398No text annotation
Not in a motif group
homologous
HL_4WF9_035
HL_69023.2
HL_7ABZ_0361/1/1451:1459No text annotation
Not in a motif group
homologous
HL_5J7L_169
HL_53837.1
HL_7ABZ_0371/1/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_7ABZ_0381/1/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_7ABZ_0391/1/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_7ABZ_0401/1/1612:1619No text annotation
Not in a motif group
HL_7ABZ_0411/1/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_7ABZ_0421/1/1691:1696UNCG
Not in a motif group
geometric
HL_4PMI_004
HL_03562.2
HL_7ABZ_0431/1/1728:1731No text annotation
Not in a motif group
geometric
HL_5TBW_071
HL_53837.1
HL_7ABZ_0441/1/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_7ABZ_0451/1/1777:1787No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_7ABZ_0461/1/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_7ABZ_0471/1/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_42097.1
HL_7ABZ_0481/1/1910:1920No text annotation
Not in a motif group
homologous
HL_5J7L_181
NA
HL_7ABZ_0491/1/1949:1957No text annotation
Not in a motif group
homologous
HL_4WF9_046
HL_51824.1
HL_7ABZ_0501/1/2027:2036No text annotation
Not in a motif group
HL_7ABZ_0511/1/2142:2151No text annotation
Not in a motif group
HL_7ABZ_0521/1/2166:2171No text annotation
Not in a motif group
HL_7ABZ_0531/1/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_7ABZ_0541/1/2248:2256No text annotation
Not in a motif group
homologous
HL_4WF9_049
HL_53171.2
HL_7ABZ_0551/1/2264:2276No text annotation
Not in a motif group
homologous
HL_5J7L_187
HL_19870.6
HL_7ABZ_0561/1/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_7ABZ_0571/1/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_7ABZ_0581/1/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_7ABZ_0591/1/2374:2379GNRA
Not in a motif group
homologous
HL_4WF9_054
HL_42097.1
HL_7ABZ_0601/1/2404:2413No text annotation
Not in a motif group
homologous
HL_7A0S_058
HL_30784.2
HL_7ABZ_0611/1/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_7ABZ_0621/1/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_7ABZ_0631/1/2551:2557No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_7ABZ_0641/1/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_7ABZ_0651/1/2658:2663No text annotation
Not in a motif group
homologous
HL_7A0S_063
HL_42097.1
HL_7ABZ_0661/1/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_4WF9_061
HL_46680.1
HL_7ABZ_0671/1/2745:2759No text annotation
Not in a motif group
homologous
HL_4WF9_062
HL_56677.7
HL_7ABZ_0681/1/2795:2801Other HL
Not in a motif group
homologous
HL_5J7L_200
HL_34168.2
HL_7ABZ_0691/1/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_7ABZ_0701/1/2856:2861No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_42097.1
HL_7ABZ_0711/2/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_7ABZ_0721/2/81:88No text annotation
Not in a motif group
HL_7ABZ_0731/2/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_7ABZ_0741/2/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_7ABZ_0751/2/207:212No text annotation
Not in a motif group
geometric
HL_4V88_198
HL_56691.2
HL_7ABZ_0761/2/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_7ABZ_0771/2/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_7ABZ_0781/2/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_7ABZ_0791/2/342:347No text annotation
Not in a motif group
homologous
HL_6CZR_080
HL_03562.2
HL_7ABZ_0801/2/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_7ABZ_0811/2/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_7ABZ_0821/2/462:470No text annotation
Not in a motif group
HL_7ABZ_0831/2/521:528No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_7ABZ_0841/2/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_7ABZ_0851/2/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_7ABZ_0861/2/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_7ABZ_0871/2/786:796No text annotation
Not in a motif group
homologous
HL_6CZR_088
HL_12326.1
HL_7ABZ_0881/2/840:846No text annotation
Not in a motif group
HL_7ABZ_0891/2/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_42097.1
HL_7ABZ_0901/2/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_7ABZ_0911/2/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_7ABZ_0921/2/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_7ABZ_0931/2/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_7ABZ_0941/2/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_7ABZ_0951/2/1134:1141No text annotation
Not in a motif group
HL_7ABZ_0961/2/1165:1171No text annotation
Not in a motif group
homologous
HL_5J7L_026
HL_90617.2
HL_7ABZ_0971/2/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_7ABZ_0981/2/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_7ABZ_0991/2/1356:1366No text annotation
Not in a motif group
homologous
HL_5J7L_029
HL_96366.1
HL_7ABZ_1001/2/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_7ABZ_1011/2/1515:1520No text annotation
Not in a motif group
homologous
HL_5J7L_031
NA
HL_7ABZ_1021/3/38:44No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_7ABZ_1031/3/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2
HL_7ABZ_1041/4/53:64No text annotation
Not in a motif group
HL_7ABZ_1051/4/110:133No text annotation
Not in a motif group
HL_7ABZ_1061/4/152:163No text annotation
Not in a motif group
HL_7ABZ_1071/4/202:227No text annotation
Not in a motif group
HL_7ABZ_1081/4/256:276No text annotation
Not in a motif group
HL_7ABZ_1091/4/338:350No text annotation
Not in a motif group
HL_7ABZ_1101/7/13:22No text annotation
Not in a motif group
homologous
HL_3KFU_004
NA
HL_7ABZ_1111/7/30:40No text annotation
Not in a motif group
homologous
HL_5EL4_222
NA
HL_7ABZ_1121/7/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5WWT_002
HL_22280.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7ABZ_0011/1/24:30,
1/1/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_7RQB_001
IL_66414.6
IL_7ABZ_0021/1/36:37,
1/1/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.2
IL_7ABZ_0031/1/43:44,
1/1/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_7ABZ_0041/1/81:85,
1/1/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_7ABZ_0051/1/183:184,
1/1/212:214
Single stack bend
Not in a motif group
homologous
IL_7A0S_005
IL_76488.2
IL_7ABZ_0061/1/188:194,
1/1/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7A0S_006
IL_04346.7
IL_7ABZ_0071/1/239:245,
1/1/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_7ABZ_0081/1/269:271,
1/1/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_7ABZ_0091/1/273:281,
1/1/359:364
No text annotation
Not in a motif group
IL_7ABZ_0101/1/293:295,
1/1/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_7ABZ_0111/1/481:484,
1/1/496:509
No text annotation
Not in a motif group
homologous
IL_5J7L_255
IL_60992.6
IL_7ABZ_0121/1/536:539,
1/1/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_7ABZ_0131/1/564:566,
1/1/575:577
No text annotation
Not in a motif group
homologous
IL_4WF9_017
IL_95997.1
IL_7ABZ_0141/1/606:610,
1/1/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_7ABZ_0151/1/672:674,
1/1/806:808
No text annotation
Not in a motif group
homologous
IL_7RQB_017
IL_95997.1
IL_7ABZ_0161/1/674:678,
1/1/799:806
No text annotation
Not in a motif group
geometric
IL_7RQB_018
IL_17470.6
IL_7ABZ_0171/1/697:698,
1/1/763:765
Single bulged A
Not in a motif group
homologous
IL_7A0S_016
IL_37497.2
IL_7ABZ_0181/1/702:703,
1/1/728:730
Single bulged G
Not in a motif group
homologous
IL_5J7L_262
IL_00225.2
IL_7ABZ_0191/1/703:707,
1/1/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_7ABZ_0201/1/738:740,
1/1/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.1
IL_7ABZ_0211/1/775:777,
1/1/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_265
IL_90991.6
IL_7ABZ_0221/1/844:847,
1/1/933:934
No text annotation
Not in a motif group
IL_7ABZ_0231/1/847:848,
1/1/930:933
Multiple bulged bases
Not in a motif group
geometric
IL_5XWP_001
IL_44546.1
IL_7ABZ_0241/1/850:851,
1/1/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_7ABZ_0251/1/856:862,
1/1/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_5J7L_270
IL_93830.3
IL_7ABZ_0261/1/862:863,
1/1/913:915
Single bulged G
Not in a motif group
geometric
IL_5J7L_271
IL_00225.2
IL_7ABZ_0271/1/864:868,
1/1/909:912
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_7ABZ_0281/1/870:872,
1/1/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_7ABZ_0291/1/875:879,
1/1/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_7ABZ_0301/1/880:883,
1/1/893:897
No text annotation
Not in a motif group
IL_7ABZ_0311/1/994:996,
1/1/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_7ABZ_0321/1/998:1002,
1/1/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_7A0S_033
IL_89002.2
IL_7ABZ_0331/1/1004:1011,
1/1/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_4WF9_037
IL_15861.7
IL_7ABZ_0341/1/1011:1013,
1/1/1149:1150
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.13
IL_7ABZ_0351/1/1018:1024,
1/1/1140:1144
No text annotation
Not in a motif group
geometric
IL_5J7L_280
IL_57188.3
IL_7ABZ_0361/1/1024:1030,
1/1/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_7ABZ_0371/1/1031:1034,
1/1/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_041
IL_82068.2
IL_7ABZ_0381/1/1038:1041,
1/1/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_7ABZ_0391/1/1043:1051,
1/1/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_7ABZ_0401/1/1059:1063,
1/1/1076:1079
No text annotation
Not in a motif group
IL_7ABZ_0411/1/1087:1090,
1/1/1101:1102
Major groove platform
Not in a motif group
geometric
IL_4LFB_024
IL_27635.1
IL_7ABZ_0421/1/1196:1198,
1/1/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_7A0S_041
IL_52767.2
IL_7ABZ_0431/1/1202:1206,
1/1/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_7ABZ_0441/1/1208:1215,
1/1/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_7ABZ_0451/1/1262:1269,
1/1/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_7ABZ_0461/1/1310:1313,
1/1/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_7ABZ_0471/1/1319:1323,
1/1/1331:1333
Major groove minor groove platform with tHH
Not in a motif group
homologous
IL_4WF9_050
IL_37712.2
IL_7ABZ_0481/1/1351:1355,
1/1/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_7A0S_048
IL_89002.2
IL_7ABZ_0491/1/1357:1361,
1/1/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_7ABZ_0501/1/1415:1416,
1/1/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_7ABZ_0511/1/1417:1421,
1/1/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_7RQB_055
IL_89002.2
IL_7ABZ_0521/1/1432:1435,
1/1/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_7ABZ_0531/1/1437:1440,
1/1/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_7ABZ_0541/1/1450:1451,
1/1/1459:1461
Single bulged U
Not in a motif group
geometric
IL_5J7L_298
IL_83039.13
IL_7ABZ_0551/1/1467:1471,
1/1/1520:1525
tSH-tHH-tHS
Not in a motif group
geometric
IL_4V9F_056
IL_62654.1
IL_7ABZ_0561/1/1474:1478,
1/1/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_7ABZ_0571/1/1481:1482,
1/1/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_7ABZ_0581/1/1488:1491,
1/1/1499:1501
No text annotation
Not in a motif group
IL_7ABZ_0591/1/1526:1529,
1/1/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_7ABZ_0611/1/1663:1665,
1/1/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_7ABZ_0621/1/1666:1669,
1/1/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_7ABZ_0631/1/1669:1674,
1/1/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_4WF9_065
IL_82842.2
IL_7ABZ_0641/1/1686:1691,
1/1/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_5J7L_308
IL_65969.2
IL_7ABZ_0651/1/1712:1718,
1/1/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_7ABZ_0661/1/1719:1726,
1/1/1734:1741
No text annotation
Not in a motif group
IL_7ABZ_0671/1/1727:1728,
1/1/1731:1733
Single bulged C
Not in a motif group
homologous
IL_5J7L_311
IL_61258.12
IL_7ABZ_0681/1/1770:1771,
1/1/1980:1982
Single bulged A
Not in a motif group
homologous
IL_4WF9_068
IL_37497.2
IL_7ABZ_0691/1/1798:1804,
1/1/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7A0S_065
IL_17069.3
IL_7ABZ_0701/1/1837:1840,
1/1/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7A0S_066
IL_88739.1
IL_7ABZ_0711/1/1841:1842,
1/1/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_7ABZ_0721/1/1846:1849,
1/1/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.6
IL_7ABZ_0731/1/1864:1867,
1/1/1874:1878
UAA/GAN
Not in a motif group
homologous
IL_4WF9_075
IL_77691.1
IL_7ABZ_0741/1/1933:1934,
1/1/1964:1967
Multiple bulged bases
Not in a motif group
homologous
IL_7A0S_071
IL_59677.2
IL_7ABZ_0751/1/1934:1945,
1/1/1961:1964
No text annotation
Not in a motif group
geometric
IL_7A0S_072
IL_81589.2
IL_7ABZ_0761/1/2050:2052,
1/1/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.1
IL_7ABZ_0771/1/2054:2056,
1/1/2612:2615
No text annotation
Not in a motif group
IL_7ABZ_0781/1/2064:2066,
1/1/2444:2446
No text annotation
Not in a motif group
homologous
IL_5J7L_322
NA
IL_7ABZ_0791/1/2067:2070,
1/1/2441:2443
UU cWW
Not in a motif group
geometric
IL_1ZZ5_002
IL_51629.2
IL_7ABZ_0801/1/2070:2071,
1/1/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_4WF9_081
IL_42622.2
IL_7ABZ_0811/1/2081:2083,
1/1/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7A0S_077
IL_38958.7
IL_7ABZ_0821/1/2085:2087,
1/1/2232:2234
No text annotation
Not in a motif group
homologous
IL_7RQB_083
IL_95997.1
IL_7ABZ_0831/1/2103:2108,
1/1/2182:2186
No text annotation
Not in a motif group
IL_7ABZ_0841/1/2108:2120,
1/1/2179:2182
No text annotation
Not in a motif group
IL_7ABZ_0851/1/2120:2122,
1/1/2176:2179
Stack and bulge
Not in a motif group
geometric
IL_2O3X_001
IL_82842.2
IL_7ABZ_0861/1/2127:2139,
1/1/2152:2161
No text annotation
Not in a motif group
IL_7ABZ_0871/1/2139:2142,
1/1/2151:2152
No text annotation
Not in a motif group
IL_7ABZ_0881/1/2202:2204,
1/1/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_7ABZ_0891/1/2350:2353,
1/1/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_7ABZ_0901/1/2401:2403,
1/1/2414:2415
No text annotation
Not in a motif group
IL_7ABZ_0911/1/2453:2455,
1/1/2496:2500
No text annotation
Not in a motif group
homologous
IL_5J7L_335
NA
IL_7ABZ_0921/1/2456:2459,
1/1/2493:2495
No text annotation
Not in a motif group
homologous
IL_5J7L_336
NA
IL_7ABZ_0931/1/2459:2461,
1/1/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_5J7L_337
IL_92788.2
IL_7ABZ_0941/1/2466:2470,
1/1/2480:2484
No text annotation
Not in a motif group
IL_7ABZ_0951/1/2507:2509,
1/1/2579:2582
No text annotation
Not in a motif group
homologous
IL_5J7L_339
NA
IL_7ABZ_0961/1/2510:2512,
1/1/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_4WF9_095
IL_90933.2
IL_7ABZ_0971/1/2512:2513,
1/1/2571:2574
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_7ABZ_0981/1/2522:2523,
1/1/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_7ABZ_0991/1/2588:2590,
1/1/2604:2606
No text annotation
Not in a motif group
homologous
IL_7RQB_100
NA
IL_7ABZ_1001/1/2591:2592,
1/1/2601:2603
Single bulged A
Not in a motif group
homologous
IL_4WF9_098
IL_69996.1
IL_7ABZ_1011/1/2636:2640,
1/1/2774:2782
tSH-tHS-tHW
Not in a motif group
homologous
IL_7RQB_102
IL_04638.1
IL_7ABZ_1021/1/2652:2658,
1/1/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_5J7L_346
IL_16458.1
IL_7ABZ_1031/1/2680:2684,
1/1/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_7ABZ_1041/1/2687:2691,
1/1/2718:2722
No text annotation
Not in a motif group
homologous
IL_4WF9_102
IL_08296.3
IL_7ABZ_1051/1/2695:2696,
1/1/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_7ABZ_1061/1/2737:2742,
1/1/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_7ABZ_1071/1/2806:2811,
1/1/2889:2892
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_49460.2
IL_7ABZ_1081/1/2838:2839,
1/1/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_4WF9_106
IL_16396.2
IL_7ABZ_1091/1/2843:2846,
1/1/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_7ABZ_1101/1/2847:2852,
1/1/2865:2869
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.5
IL_7ABZ_1111/2/30:32,
1/2/552:553
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_00225.2
IL_7ABZ_1121/2/44:45,
1/2/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_7ABZ_1131/2/47:52,
1/2/359:361
No text annotation
Not in a motif group
geometric
IL_5J7L_003
IL_11178.1
IL_7ABZ_1141/2/54:56,
1/2/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_7ABZ_1151/2/63:66,
1/2/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_7ABZ_1161/2/67:69,
1/2/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_7ABZ_1171/2/70:74,
1/2/96:98
No text annotation
Not in a motif group
IL_7ABZ_1181/2/75:79,
1/2/90:95
No text annotation
Not in a motif group
IL_7ABZ_1191/2/128:131,
1/2/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_7ABZ_1201/2/132:136,
1/2/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_7ABZ_1211/2/144:146,
1/2/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_7ABZ_1221/2/147:153,
1/2/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_7ABZ_1231/2/203:207,
1/2/212:214
No text annotation
Not in a motif group
IL_7ABZ_1241/2/242:247,
1/2/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_7ABZ_1251/2/249:252,
1/2/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_7ABZ_1261/2/292:293,
1/2/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_7ABZ_1271/2/367:369,
1/2/392:393
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.13
IL_7ABZ_1281/2/371:375,
1/2/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_7ABZ_1291/2/375:376,
1/2/387:389
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_7ABZ_1301/2/408:416,
1/2/427:434
No text annotation
Not in a motif group
IL_7ABZ_1311/2/440:442,
1/2/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_7ABZ_1321/2/446:450,
1/2/483:488
tSH-tHW-tWW
Not in a motif group
geometric
IL_5J7L_022
IL_88269.3
IL_7ABZ_1331/2/450:455,
1/2/477:483
No text annotation
Not in a motif group
homologous
IL_5J7L_023
IL_70801.1
IL_7ABZ_1341/2/504:511,
1/2/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_7ABZ_1351/2/515:521,
1/2/528:536
No text annotation
Not in a motif group
homologous
IL_5J7L_025
NA
IL_7ABZ_1361/2/569:575,
1/2/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_7ABZ_1371/2/580:584,
1/2/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_7ABZ_1381/2/593:596,
1/2/644:646
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_63450.2
IL_7ABZ_1391/2/597:598,
1/2/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_7ABZ_1401/2/605:612,
1/2/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_7ABZ_1411/2/654:655,
1/2/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_7ABZ_1421/2/659:660,
1/2/745:747
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_7ABZ_1431/2/662:666,
1/2/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_7ABZ_1441/2/673:678,
1/2/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_7ABZ_1451/2/684:688,
1/2/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_7ABZ_1461/2/774:778,
1/2/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_7ABZ_1471/2/779:783,
1/2/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_7ABZ_1481/2/887:895,
1/2/904:910
9x7 Sarcin-Ricin with inserted C; G-bulge
Not in a motif group
homologous
IL_6CZR_146
IL_68633.1
IL_7ABZ_1491/2/922:923,
1/2/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.2
IL_7ABZ_1501/2/925:927,
1/2/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_7ABZ_1511/2/933:935,
1/2/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_7ABZ_1521/2/953:954,
1/2/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.2
IL_7ABZ_1531/2/993:999,
1/2/1041:1045
No text annotation
Not in a motif group
IL_7ABZ_1541/2/1003:1008,
1/2/1022:1037
No text annotation
Not in a motif group
IL_7ABZ_1551/2/1008:1011,
1/2/1018:1022
No text annotation
Not in a motif group
IL_7ABZ_1561/2/1047:1048,
1/2/1209:1211
Single stack bend
Not in a motif group
geometric
IL_7A0S_083
IL_76488.2
IL_7ABZ_1571/2/1048:1050,
1/2/1208:1209
Single bulged U
Not in a motif group
geometric
IL_3MEI_001
IL_83039.13
IL_7ABZ_1581/2/1050:1052,
1/2/1206:1208
No text annotation
Not in a motif group
geometric
IL_1N33_070
IL_95997.1
IL_7ABZ_1591/2/1052:1056,
1/2/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_7ABZ_1601/2/1057:1058,
1/2/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_7ABZ_1611/2/1060:1061,
1/2/1195:1197
Single bulged U
Not in a motif group
homologous
IL_4LFB_046
IL_83039.13
IL_7ABZ_1621/2/1061:1063,
1/2/1193:1195
No text annotation
Not in a motif group
geometric
IL_4KYY_003
IL_95997.1
IL_7ABZ_1631/2/1124:1129,
1/2/1143:1149
No text annotation
Not in a motif group
IL_7ABZ_1641/2/1129:1132,
1/2/1142:1143
Minor groove platform
Not in a motif group
geometric
IL_3IWN_005
IL_15052.1
IL_7ABZ_1651/2/1132:1134,
1/2/1141:1142
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_76488.2
IL_7ABZ_1661/2/1158:1161,
1/2/1175:1181
No text annotation
Not in a motif group
homologous
IL_5J7L_053
IL_42032.1
IL_7ABZ_1671/2/1242:1243,
1/2/1294:1296
Single stack bend
Not in a motif group
geometric
IL_7A0S_005
IL_76488.2
IL_7ABZ_1681/2/1246:1253,
1/2/1284:1291
No text annotation
Not in a motif group
IL_7ABZ_1691/2/1255:1258,
1/2/1277:1282
No text annotation
Not in a motif group
homologous
IL_5J7L_055
IL_75461.4
IL_7ABZ_1701/2/1259:1263,
1/2/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_7ABZ_1711/2/1303:1308,
1/2/1329:1334
No text annotation
Not in a motif group
homologous
IL_5J7L_057
IL_19954.2
IL_7ABZ_1721/2/1399:1401,
1/2/1501:1504
No text annotation
Not in a motif group
geometric
IL_5J7L_058
IL_36143.3
IL_7ABZ_1731/2/1401:1404,
1/2/1497:1501
No text annotation
Not in a motif group
homologous
IL_5J7L_059
NA
IL_7ABZ_1741/2/1405:1409,
1/2/1491:1496
No text annotation
Not in a motif group
IL_7ABZ_1751/2/1412:1414,
1/2/1486:1488
No text annotation
Not in a motif group
homologous
IL_4LFB_059
IL_95997.1
IL_7ABZ_1761/2/1416:1419,
1/2/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_7ABZ_1771/2/1430:1435,
1/2/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_7ABZ_1781/2/1439:1442,
1/2/1460:1462
No text annotation
Not in a motif group
IL_7ABZ_1791/2/1443:1444,
1/2/1457:1459
Single stack bend
Not in a motif group
geometric
IL_4WF9_007
IL_76488.2
IL_7ABZ_1801/2/1444:1448,
1/2/1455:1457
No text annotation
Not in a motif group
IL_7ABZ_1811/3/17:18,
1/3/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.2
IL_7ABZ_1821/3/23:28,
1/3/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_7ABZ_1831/3/30:31,
1/3/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_357
IL_09061.6
IL_7ABZ_1841/3/34:38,
1/3/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5J7L_358
IL_58103.6
IL_7ABZ_1851/3/71:79,
1/3/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3
IL_7ABZ_1861/4/107:110,
1/4/133:136
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_438
IL_30621.2
IL_7ABZ_1871/4/146:147,
1/4/168:170
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_76488.2
IL_7ABZ_1881/4/147:151,
1/4/164:168
No text annotation
Not in a motif group
IL_7ABZ_1891/4/250:252,
1/4/279:282
No text annotation
Not in a motif group
IL_7ABZ_1901/4/252:256,
1/4/276:279
No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
IL_7ABZ_060No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7ABZ_0011/1/30:31,
1/1/474:481,
1/1/509:510
No text annotation
Not in a motif group
J3_7ABZ_0021/1/56:57,
1/1/70:76,
1/1/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_7ABZ_0031/1/683:689,
1/1/773:775,
1/1/791:794
No text annotation
Not in a motif group
J3_7ABZ_0041/1/698:700,
1/1/732:736,
1/1/760:763
No text annotation
Not in a motif group
J3_7ABZ_0051/1/1055:1057,
1/1/1081:1087,
1/1/1102:1104
No text annotation
Not in a motif group
homologous
J3_6PRV_001
NA
J3_7ABZ_0061/1/1298:1303,
1/1/1625:1627,
1/1/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_7ABZ_0071/1/1306:1309,
1/1/1605:1611,
1/1/1620:1622
No text annotation
Not in a motif group
homologous
J3_5J7L_042
NA
J3_7ABZ_0081/1/2091:2093,
1/1/2196:2200,
1/1/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_7ABZ_0091/1/2124:2127,
1/1/2161:2166,
1/1/2171:2174
No text annotation
Not in a motif group
J3_7ABZ_0101/1/2295:2299,
1/1/2317:2323,
1/1/2332:2337
No text annotation
Not in a motif group
J3_7ABZ_0111/1/2517:2520,
1/1/2545:2547,
1/1/2561:2567
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_7ABZ_0121/1/2789:2791,
1/1/2805:2806,
1/1/2892:2894
No text annotation
Not in a motif group
J3_7ABZ_0131/1/2812:2815,
1/1/2831:2836,
1/1/2882:2888
No text annotation
Not in a motif group
homologous
J3_5J7L_048
NA
J3_7ABZ_0141/2/46:47,
1/2/361:367,
1/2/393:395
No text annotation
Not in a motif group
J3_7ABZ_0151/2/586:588,
1/2/651:654,
1/2/754:755
No text annotation
Not in a motif group
J3_7ABZ_0161/2/672:673,
1/2/717:725,
1/2/732:734
No text annotation
Not in a motif group
J3_7ABZ_0171/2/826:829,
1/2/857:861,
1/2/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_7ABZ_0181/2/936:939,
1/2/1344:1350,
1/2/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_7ABZ_0191/2/943:946,
1/2/1235:1237,
1/2/1337:1340
No text annotation
Not in a motif group
homologous
J3_5J7L_005
NA
J3_7ABZ_0201/2/955:962,
1/2/973:985,
1/2/1220:1225
No text annotation
Not in a motif group
J3_7ABZ_0211/2/990:993,
1/2/1045:1047,
1/2/1211:1215
No text annotation
Not in a motif group
J3_7ABZ_0221/2/1063:1068,
1/2/1107:1113,
1/2/1187:1193
No text annotation
Not in a motif group
J3_7ABZ_0231/2/1073:1074,
1/2/1083:1087,
1/2/1098:1102
No text annotation
Not in a motif group
homologous
J3_5J7L_009
NA
J3_7ABZ_0241/2/1115:1118,
1/2/1155:1158,
1/2/1181:1185
No text annotation
Not in a motif group
J3_7ABZ_0251/2/1237:1242,
1/2/1296:1303,
1/2/1334:1337
No text annotation
Not in a motif group
J3_7ABZ_0261/3/10:16,
1/3/68:70,
1/3/106:110
No text annotation
Not in a motif group
homologous
J3_7A0S_014
NA

Problematic loops

No problematic loops


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