RNA 3D Hub //

7ASP Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7ASP_0871/3/32:46No text annotation
homologous
HL_9DFE_067
HL_97756.2
HL_7ASP_0011/3/36:42No text annotation
homologous
HL_5J7L_203
HL_47787.2
HL_7ASP_0021/3/79:92No text annotation
HL_7ASP_0031/X/158:163No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_7ASP_0971/X/268:275No text annotation
HL_7ASP_0051/X/303:310No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_7ASP_0881/X/328:341No text annotation
HL_7ASP_0061/X/330:340No text annotation
HL_7ASP_0071/X/387:392Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_7ASP_0081/X/426:433No text annotation
HL_7ASP_0981/X/530:535GNRA variation
homologous
HL_5J7L_205
HL_37824.7
HL_7ASP_0101/X/600:655No text annotation
HL_7ASP_0111/X/697:706No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_7ASP_0121/X/794:804No text annotation
geometric
HL_8C3A_039
NA
HL_7ASP_0141/X/872:877GNRA
homologous
HL_5J7L_019
HL_37824.7
HL_7ASP_0151/X/907:912No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_7ASP_0161/X/1020:1029No text annotation
HL_7ASP_0171/X/1081:1118No text annotation
HL_7ASP_0891/X/1127:1196No text annotation
HL_7ASP_0181/X/1175:1183No text annotation
geometric
HL_2Y8Y_001
HL_81100.2
HL_7ASP_0191/X/1270:1287No text annotation
HL_7ASP_0201/X/1324:1335No text annotation
HL_7ASP_0211/X/1363:1382No text annotation
HL_7ASP_0221/X/1451:1473No text annotation
HL_7ASP_0231/X/1526:1532Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_7ASP_0241/Y/67:74No text annotation
geometric
HL_4WF9_001
HL_86769.4
HL_7ASP_0251/Y/87:95Mini UNCG
geometric
HL_4TUW_002
HL_56334.1
HL_7ASP_0261/Y/122:127No text annotation
homologous
HL_5J7L_136
HL_82710.2
HL_7ASP_0271/Y/130:148No text annotation
HL_7ASP_0291/Y/197:204No text annotation
geometric
HL_4V9F_006
HL_30068.2
HL_7ASP_0301/Y/249:255No text annotation
homologous
HL_5J7L_141
HL_37369.2
HL_7ASP_0321/Y/348:355T-loop with 1 bulged base
homologous
HL_7A0S_010
HL_01609.3
HL_7ASP_0331/Y/370:378T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_7ASP_0901/Y/428:438No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_7ASP_0351/Y/456:463No text annotation
homologous
HL_7RQB_014
NA
HL_7ASP_0361/Y/508:513GNRA
homologous
HL_4WF9_015
HL_37824.7
HL_7ASP_0371/Y/533:538GNRA
homologous
HL_7RQB_016
NA
HL_7ASP_0381/Y/587:594No text annotation
homologous
HL_4WF9_017
HL_50318.1
HL_7ASP_0391/Y/609:618T-loop with 2 stacked bulged bases
homologous
HL_4WF9_018
HL_28252.6
HL_7ASP_0401/Y/655:661GNRA
geometric
HL_6UFG_005
HL_37824.7
HL_7ASP_0411/Y/674:679GNRA
homologous
HL_4WF9_020
HL_37824.7
HL_7ASP_0421/Y/686:692No text annotation
geometric
HL_4V88_198
NA
HL_7ASP_0441/Y/789:798No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_7ASP_0911/Y/824:830No text annotation
homologous
HL_4WF9_024
HL_87954.2
HL_7ASP_0461/Y/871:876No text annotation
homologous
HL_7RQB_025
NA
HL_7ASP_0481/Y/999:1006GNRA
homologous
HL_4WF9_027
HL_37824.7
HL_7ASP_0491/Y/1022:1029No text annotation
homologous
HL_4WF9_028
HL_42998.2
HL_7ASP_0511/Y/1210:1223No text annotation
HL_7ASP_0521/Y/1260:1265GNRA
homologous
HL_7A0S_031
HL_37824.7
HL_7ASP_0531/Y/1318:1326T-loop with 2 stacked bulged bases
homologous
HL_4WF9_032
HL_28252.6
HL_7ASP_0921/Y/1352:1374No text annotation
HL_7ASP_0541/Y/1354:1373No text annotation
HL_7ASP_0551/Y/1400:1405GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_7ASP_0561/Y/1426:1435No text annotation
homologous
HL_4WF9_035
HL_81545.2
HL_7ASP_0581/Y/1612:1615Mini UNCG
homologous
HL_7A0S_039
HL_48778.2
HL_7ASP_0591/Y/1656:1663No text annotation
homologous
HL_4WF9_038
HL_89567.2
HL_7ASP_0601/Y/1673:1681GNRA with extra cWW
homologous
HL_4WF9_039
HL_20167.2
HL_7ASP_0611/Y/1735:1740No text annotation
geometric
HL_7RQB_042
NA
HL_7ASP_0931/Y/1757:1772No text annotation
HL_7ASP_0621/Y/1761:1769No text annotation
HL_7ASP_0631/Y/1779:1783No text annotation
homologous
HL_7RQB_044
NA
HL_7ASP_0641/Y/1804:1814No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_7ASP_0651/Y/1833:1838GNRA
homologous
HL_7RQB_046
NA
HL_7ASP_0941/Y/1877:1919No text annotation
HL_7ASP_0661/Y/1894:1901No text annotation
homologous
HL_4WF9_045
NA
HL_7ASP_0671/Y/1974:1986No text annotation
geometric
HL_5XUZ_001
HL_69752.2
HL_7ASP_0681/Y/2054:2063No text annotation
homologous
HL_4WF9_047
HL_61996.2
HL_7ASP_0701/Y/2236:2242No text annotation
geometric
HL_8C3A_039
NA
HL_7ASP_0711/Y/2275:2283No text annotation
homologous
HL_5J7L_186
HL_85367.2
HL_7ASP_0721/Y/2291:2303No text annotation
homologous
HL_4WF9_050
HL_91939.2
HL_7ASP_0951/Y/2351:2358Pseudoknot geometry
homologous
HL_5J7L_189
HL_93324.4
HL_7ASP_0751/Y/2382:2389GNRA with extra cWW
homologous
HL_4WF9_053
HL_04259.3
HL_7ASP_0761/Y/2400:2407GNRA with extra cWW
geometric
HL_7A0S_056
HL_04259.3
HL_7ASP_0771/Y/2431:2440No text annotation
homologous
HL_7A0S_058
HL_53454.2
HL_7ASP_0781/Y/2498:2506No text annotation
homologous
HL_5J7L_193
HL_32735.2
HL_7ASP_0961/Y/2552:2565No text annotation
HL_7ASP_0791/Y/2554:2563No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_7ASP_0801/Y/2578:2584No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_7ASP_0811/Y/2621:2626GNRA
homologous
HL_5J7L_196
HL_37824.7
HL_7ASP_0831/Y/2727:2734No text annotation
geometric
HL_4V83_220
HL_85367.2
HL_7ASP_0841/Y/2772:2786No text annotation
homologous
HL_7A0S_065
HL_74055.2
HL_7ASP_0851/Y/2839:2847No text annotation
homologous
HL_4WF9_064
HL_64690.6
HL_7ASP_0861/Y/2876:2881GNRA
homologous
HL_7A0S_068
HL_37824.7

Problematic loops

#loop idProblemSequence
HL_7ASP_004No text annotation
HL_7ASP_009No text annotation
HL_7ASP_013No text annotation
HL_7ASP_028No text annotation
HL_7ASP_031No text annotation
HL_7ASP_034No text annotation
HL_7ASP_043No text annotation
HL_7ASP_045No text annotation
HL_7ASP_047No text annotation
HL_7ASP_050Mini UNCG
HL_7ASP_057No text annotation
HL_7ASP_069No text annotation
HL_7ASP_073No text annotation
HL_7ASP_074No text annotation
HL_7ASP_082No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7ASP_1231/3/3:5,
1/3/110:112		Isolated cWH basepair
homologous
IL_4WF9_121
IL_10167.5
IL_7ASP_0021/3/5:8,
1/3/107:110		Tandem non-canonical cWW pairs
homologous
IL_4WF9_110
IL_51479.1
IL_7ASP_1241/3/15:16,
1/3/63:65		Major groove intercalation
homologous
IL_4WF9_112
IL_31462.5
IL_7ASP_0041/3/20:27,
1/3/53:59		No text annotation
homologous
IL_4WF9_113
IL_19048.1
IL_7ASP_0051/3/28:29,
1/3/49:52		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_7ASP_0061/3/32:36,
1/3/42:46		Symmetric double minor groove platform
geometric
IL_5NS3_002
IL_58103.11
IL_7ASP_1461/X/30:33,
1/X/560:562		No text annotation
IL_7ASP_0081/X/128:131,
1/X/239:240		Multiple bulged bases
homologous
IL_4LFB_007
IL_33761.2
IL_7ASP_0091/X/132:138,
1/X/233:238		No text annotation
IL_7ASP_0101/X/153:157,
1/X/164:168		No text annotation
IL_7ASP_0111/X/250:255,
1/X/285:292		No text annotation
IL_7ASP_1261/X/255:267,
1/X/276:285		No text annotation
IL_7ASP_1471/X/300:303,
1/X/310:316		No text annotation
IL_7ASP_0131/X/328:330,
1/X/340:341		Single stack bend
geometric
IL_4WF9_007
IL_90729.1
IL_7ASP_0141/X/375:377,
1/X/400:401		Single bulged U
homologous
IL_5J7L_017
IL_89505.4
IL_7ASP_0151/X/379:383,
1/X/397:398		C-loop
homologous
IL_6CZR_127
NA
IL_7ASP_0161/X/383:384,
1/X/395:397		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_7ASP_1271/X/512:519,
1/X/548:549		SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_7ASP_0181/X/522:529,
1/X/536:545		No text annotation
IL_7ASP_1481/X/664:686,
1/X/720:758		No text annotation
IL_7ASP_1491/X/686:697,
1/X/706:720		No text annotation
IL_7ASP_0191/X/896:905,
1/X/914:921		No text annotation
IL_7ASP_0201/X/935:938,
1/X/1400:1402		No text annotation
IL_7ASP_0211/X/1003:1007,
1/X/1056:1057		No text annotation
IL_7ASP_1501/X/1059:1068,
1/X/1215:1221		No text annotation
IL_7ASP_1511/X/1069:1070,
1/X/1210:1214		No text annotation
IL_7ASP_0251/X/1072:1073,
1/X/1206:1208		No text annotation
IL_7ASP_0261/X/1073:1075,
1/X/1204:1206		Isolated non-canonical cWW pair
geometric
IL_3RG5_002
IL_28037.2
IL_7ASP_1291/X/1075:1125,
1/X/1198:1204		No text annotation
IL_7ASP_0271/X/1127:1175,
1/X/1183:1196		No text annotation
IL_7ASP_0291/X/1314:1319,
1/X/1340:1345		No text annotation
homologous
IL_6CZR_164
NA
IL_7ASP_1301/X/1412:1425,
1/X/1498:1513		No text annotation
IL_7ASP_1311/X/1427:1432,
1/X/1491:1496		No text annotation
IL_7ASP_0311/X/1435:1438,
1/X/1485:1488		Tandem non-canonical cWW pairs
geometric
IL_4V88_432
NA
IL_7ASP_0321/X/1441:1446,
1/X/1478:1482		Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_7ASP_0331/X/1446:1448,
1/X/1476:1478		Isolated non-canonical cWW pair
homologous
IL_4LFB_063
IL_87907.2
IL_7ASP_0341/X/1524:1526,
1/X/1532:1535		No text annotation
IL_7ASP_0361/Y/42:44,
1/Y/480:483		Minor groove platform with extra cWW
homologous
IL_4WF9_003
IL_90351.1
IL_7ASP_1321/Y/56:76,
1/Y/109:113		No text annotation
geometric
IL_5TBW_144
NA
IL_7ASP_0371/Y/77:86,
1/Y/96:108		No text annotation
IL_7ASP_0381/Y/187:189,
1/Y/212:214		Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_7ASP_0391/Y/190:197,
1/Y/204:211		tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_7ASP_0401/Y/241:248,
1/Y/256:262		8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_009
IL_04346.10
IL_7ASP_0411/Y/276:278,
1/Y/292:294		Isolated non-canonical cWW pair
geometric
IL_1ZH5_001
IL_87907.2
IL_7ASP_1521/Y/278:282,
1/Y/289:292		No text annotation
IL_7ASP_0431/Y/305:306,
1/Y/409:412		No text annotation
geometric
IL_5TBW_503
NA
IL_7ASP_0441/Y/581:584,
1/Y/597:600		Double sheared
homologous
IL_4WF9_016
IL_09705.15
IL_7ASP_0451/Y/607:609,
1/Y/618:620		Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_07785.1
IL_7ASP_0461/Y/637:640,
1/Y/705:708		Tandem non-canonical cWW pairs
geometric
IL_5EW4_002
IL_85033.2
IL_7ASP_0471/Y/649:653,
1/Y/663:667		AAA cross-strand stack
homologous
IL_4WF9_019
IL_66798.2
IL_7ASP_0481/Y/716:723,
1/Y/844:853		No text annotation
IL_7ASP_0491/Y/747:752,
1/Y/769:775		No text annotation
IL_7ASP_1531/Y/747:755,
1/Y/766:775		No text annotation
IL_7ASP_0501/Y/783:785,
1/Y/802:803		Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_7ASP_0511/Y/882:885,
1/Y/982:986		No text annotation
IL_7ASP_0521/Y/889:893,
1/Y/975:978		No text annotation
homologous
IL_4WF9_029
IL_06300.1
IL_7ASP_1351/Y/896:897,
1/Y/970:972		No text annotation
IL_7ASP_0541/Y/901:907,
1/Y/960:966		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_4WF9_031
IL_29198.2
IL_7ASP_0551/Y/907:908,
1/Y/958:960		Minor groove platform
homologous
IL_4WF9_032
IL_51454.2
IL_7ASP_0561/Y/909:913,
1/Y/954:957		C-loop
homologous
IL_4WF9_033
IL_26222.2
IL_7ASP_0571/Y/1038:1040,
1/Y/1203:1204		Single bulged C
homologous
IL_7RQB_035
NA
IL_7ASP_0581/Y/1042:1046,
1/Y/1197:1201		UAA/GAN
homologous
IL_7A0S_033
IL_38507.2
IL_7ASP_0591/Y/1048:1055,
1/Y/1194:1195		SSU/LSU pseudoknot
homologous
IL_5J7L_278
IL_41203.4
IL_7ASP_0601/Y/1055:1057,
1/Y/1193:1194		Single bulged U
geometric
IL_5J7L_279
IL_89505.4
IL_7ASP_0611/Y/1061:1068,
1/Y/1184:1189		No text annotation
IL_7ASP_0621/Y/1068:1074,
1/Y/1168:1184		No text annotation
geometric
IL_4WF9_040
IL_50715.3
IL_7ASP_0631/Y/1075:1078,
1/Y/1165:1167		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
IL_57744.1
IL_7ASP_0641/Y/1081:1083,
1/Y/1160:1162		Isolated non-canonical cWW pair
homologous
IL_4WF9_042
IL_87907.2
IL_7ASP_0651/Y/1235:1237,
1/Y/1285:1288		Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.3
IL_7ASP_0661/Y/1243:1246,
1/Y/1276:1279		Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_7ASP_0671/Y/1246:1253,
1/Y/1272:1276		Kink-turn
geometric
IL_4V9F_048
IL_70923.9
IL_7ASP_0681/Y/1257:1259,
1/Y/1266:1268		Intercalated cWW
homologous
IL_4WF9_047
IL_31737.3
IL_7ASP_0691/Y/1300:1307,
1/Y/2038:2044		8x7 Sarcin-Ricin; G-bulge
homologous
IL_4WF9_048
IL_04346.10
IL_7ASP_0701/Y/1352:1354,
1/Y/1373:1374		Not an internal loop
geometric
IL_5VCI_005
NA
IL_7ASP_0711/Y/1388:1392,
1/Y/1413:1417		UAA/GAN
homologous
IL_4WF9_051
IL_89021.2
IL_7ASP_0721/Y/1394:1398,
1/Y/1407:1411		tSH-tHW-tHS
homologous
IL_7A0S_049
IL_17136.7
IL_7ASP_0731/Y/1447:1452,
1/Y/1631:1636		No text annotation
IL_7ASP_0751/Y/1461:1465,
1/Y/1624:1627		Other IL
homologous
IL_4WF9_054
IL_99646.2
IL_7ASP_1371/Y/1468:1474,
1/Y/1610:1621		No text annotation
IL_7ASP_0771/Y/1518:1522,
1/Y/1558:1562		No text annotation
IL_7ASP_0781/Y/1695:1700,
1/Y/2031:2033		No text annotation
homologous
IL_4WF9_062
IL_12566.4
IL_7ASP_0791/Y/1707:1713,
1/Y/2020:2024		No text annotation
IL_7ASP_1381/Y/1707:1718,
1/Y/2017:2024		No text annotation
IL_7ASP_0801/Y/1713:1718,
1/Y/2017:2020		Intercalated tWH
homologous
IL_4WF9_065
IL_76758.2
IL_7ASP_0811/Y/1730:1735,
1/Y/1740:1746		tSH-tSH-tHH-tHS
homologous
IL_7A0S_063
IL_47346.2
IL_7ASP_0821/Y/1757:1761,
1/Y/1769:1772		No text annotation
IL_7ASP_0831/Y/1797:1798,
1/Y/2007:2009		Single bulged A
homologous
IL_5J7L_312
IL_31462.5
IL_7ASP_0841/Y/1825:1831,
1/Y/1840:1848		Kink-turn related
homologous
IL_7RQB_070
NA
IL_7ASP_0851/Y/1864:1867,
1/Y/1929:1930		Minor groove platform, major groove intercalation
geometric
IL_5J7L_314
IL_95583.2
IL_7ASP_0861/Y/1867:1869,
1/Y/1925:1929		No text annotation
IL_7ASP_1401/Y/1872:1876,
1/Y/1920:1922		No text annotation
IL_7ASP_0881/Y/1877:1882,
1/Y/1914:1919		No text annotation
IL_7ASP_0891/Y/1882:1890,
1/Y/1906:1914		No text annotation
IL_7ASP_0901/Y/1890:1894,
1/Y/1901:1906		No text annotation
IL_7ASP_0911/Y/1960:1961,
1/Y/1991:1994		Bulged stacked bases
geometric
IL_5J7L_318
IL_22551.3
IL_7ASP_0921/Y/1961:1972,
1/Y/1988:1991		No text annotation
geometric
IL_4WF9_077
IL_42218.2
IL_7ASP_0931/Y/2076:2079,
1/Y/2644:2646		No text annotation
geometric
IL_6DME_003
IL_55516.2
IL_7ASP_0941/Y/2081:2083,
1/Y/2639:2642		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_7ASP_0951/Y/2094:2096,
1/Y/2469:2470		Single bulged U
homologous
IL_7RQB_080
NA
IL_7ASP_0961/Y/2097:2098,
1/Y/2465:2468		Minor groove platform
homologous
IL_7RQB_081
NA
IL_7ASP_0971/Y/2108:2110,
1/Y/2263:2266		Isolated tHS basepair with bulges
homologous
IL_4WF9_082
IL_85599.2
IL_7ASP_0981/Y/2111:2113,
1/Y/2260:2262		Isolated non-canonical cWW pair
homologous
IL_4WF9_083
IL_87907.2
IL_7ASP_1411/Y/2123:2125,
1/Y/2218:2220		Isolated non-canonical cWW pair
geometric
IL_7XPL_001
IL_28037.2
IL_7ASP_1001/Y/2129:2132,
1/Y/2211:2214		Self complementary
geometric
IL_3NDB_001
NA
IL_7ASP_1011/Y/2229:2231,
1/Y/2247:2248		Single bulged G
geometric
IL_3NDB_004
IL_00225.13
IL_7ASP_1021/Y/2377:2380,
1/Y/2391:2394		Double sheared
homologous
IL_5J7L_333
IL_09705.15
IL_7ASP_1031/Y/2428:2430,
1/Y/2441:2442		Single bulged U
homologous
IL_4WF9_088
IL_89505.4
IL_7ASP_1041/Y/2480:2481,
1/Y/2525:2527		Single stack bend
geometric
IL_4WF9_089
IL_26793.1
IL_7ASP_1051/Y/2481:2482,
1/Y/2523:2525		Major groove platform
homologous
IL_4WF9_090
IL_48076.6
IL_7ASP_1061/Y/2484:2486,
1/Y/2520:2521		Major groove platform
geometric
IL_4WF9_091
IL_48076.6
IL_7ASP_1071/Y/2486:2488,
1/Y/2516:2520		Major groove minor groove platform with extra cWW
homologous
IL_7RQB_094
NA
IL_7ASP_1081/Y/2493:2497,
1/Y/2507:2511		Triple sheared
homologous
IL_7A0S_087
IL_17948.2
IL_7ASP_1091/Y/2534:2535,
1/Y/2607:2609		Major groove platform
homologous
IL_7A0S_088
IL_07039.3
IL_7ASP_1101/Y/2537:2539,
1/Y/2601:2605		Isolated non-canonical cWW with bulges
geometric
IL_4WF9_095
IL_07785.1
IL_7ASP_1111/Y/2539:2540,
1/Y/2598:2601		No text annotation
homologous
IL_4WF9_096
IL_42626.2
IL_7ASP_1431/Y/2549:2550,
1/Y/2567:2570		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_7ASP_1131/Y/2618:2619,
1/Y/2628:2630		Single bulged A
homologous
IL_5J7L_344
IL_31462.5
IL_7ASP_1441/Y/2662:2667,
1/Y/2801:2810		No text annotation
IL_7ASP_1151/Y/2707:2711,
1/Y/2752:2754		C-loop
homologous
IL_4WF9_101
IL_63596.11
IL_7ASP_1161/Y/2714:2719,
1/Y/2744:2749		No text annotation
IL_7ASP_1171/Y/2722:2723,
1/Y/2738:2741		Multiple bulged bases
homologous
IL_4WF9_103
IL_42626.2
IL_7ASP_1181/Y/2763:2764,
1/Y/2794:2796		No text annotation
IL_7ASP_1451/Y/2764:2769,
1/Y/2789:2794		UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_49767.8
IL_7ASP_1201/Y/2858:2859,
1/Y/2898:2900		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_7ASP_1211/Y/2863:2865,
1/Y/2891:2894		No text annotation
homologous
IL_4WF9_107
IL_31531.3
IL_7ASP_1221/Y/2867:2872,
1/Y/2885:2889		tHS double platform
homologous
IL_4WF9_108
IL_70411.2

Problematic loops

#loop idProblemSequence
IL_7ASP_001Tandem non-canonical cWW pairs
IL_7ASP_003No text annotation
IL_7ASP_007No text annotation
IL_7ASP_125Isolated non-canonical cWW pair
IL_7ASP_012No text annotation
IL_7ASP_017No text annotation
IL_7ASP_128No text annotation
IL_7ASP_022No text annotation
IL_7ASP_023No text annotation
IL_7ASP_024No text annotation
IL_7ASP_028No text annotation
IL_7ASP_030No text annotation
IL_7ASP_035Isolated non-canonical cWW pair
IL_7ASP_042No text annotation
IL_7ASP_133No text annotation
IL_7ASP_134No text annotation
IL_7ASP_053No text annotation
IL_7ASP_136Isolated non-canonical cWW pair
IL_7ASP_074No text annotation
IL_7ASP_076No text annotation
IL_7ASP_139Isolated cWH basepair
IL_7ASP_087No text annotation
IL_7ASP_099Tandem non-canonical cWW pairs
IL_7ASP_142Isolated cWH basepair
IL_7ASP_112No text annotation
IL_7ASP_114No text annotation
IL_7ASP_119No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7ASP_0181/3/8:14,
1/3/66:79,
1/3/92:107		No text annotation
J3_7ASP_0191/X/44:54,
1/X/366:375,
1/X/401:407		No text annotation
J3_7ASP_0201/X/938:950,
1/X/1354:1363,
1/X/1382:1400		No text annotation
J3_7ASP_0271/X/952:960,
1/X/1242:1248,
1/X/1348:1352		No text annotation
J3_7ASP_0281/X/961:1007,
1/X/1056:1059,
1/X/1221:1241		No text annotation
J3_7ASP_0031/X/1075:1081,
1/X/1118:1125,
1/X/1198:1204		No text annotation
J3_7ASP_0041/X/1248:1252,
1/X/1307:1314,
1/X/1345:1348		No text annotation
homologous
J3_4LFB_009
J3_37047.6
J3_7ASP_0291/X/1248:1264,
1/X/1295:1323,
1/X/1336:1348		No text annotation
J3_7ASP_0231/Y/24:31,
1/Y/520:530,
1/Y/541:561		No text annotation
J3_7ASP_0241/Y/32:37,
1/Y/488:507,
1/Y/514:519		No text annotation
J3_7ASP_0051/Y/56:67,
1/Y/74:76,
1/Y/109:113		No text annotation
homologous
J3_4WF9_001
J3_47707.1
J3_7ASP_0061/Y/272:276,
1/Y/294:302,
1/Y/415:416		No text annotation
homologous
J3_7RQB_003
NA
J3_7ASP_0251/Y/340:344,
1/Y/359:368,
1/Y/380:384		No text annotation
homologous
J3_4WF9_015
J3_46299.2
J3_7ASP_0071/Y/728:734,
1/Y/818:823,
1/Y/831:839		No text annotation
J3_7ASP_0081/Y/742:745,
1/Y/777:781,
1/Y/805:810		No text annotation
geometric
J3_5TBW_005
NA
J3_7ASP_0091/Y/1335:1340,
1/Y/1669:1671,
1/Y/1683:1686		No text annotation
homologous
J3_7RQB_007
NA
J3_7ASP_0101/Y/1343:1346,
1/Y/1649:1655,
1/Y/1664:1666		No text annotation
homologous
J3_5J7L_042
J3_19545.2
J3_7ASP_0111/Y/1381:1386,
1/Y/1419:1422,
1/Y/1439:1440		No text annotation
homologous
J3_5J7L_043
J3_92705.1
J3_7ASP_0121/Y/1860:1863,
1/Y/1931:1960,
1/Y/1994:1999		No text annotation
J3_7ASP_0131/Y/2118:2120,
1/Y/2223:2228,
1/Y/2249:2255		No text annotation
homologous
J3_4WF9_007
J3_07703.1
J3_7ASP_0141/Y/2309:2312,
1/Y/2410:2423,
1/Y/2447:2454		No text annotation
J3_7ASP_0161/Y/2544:2547,
1/Y/2572:2574,
1/Y/2588:2594		No text annotation
homologous
J3_4WF9_009
J3_32601.5
J3_7ASP_0171/Y/2834:2835,
1/Y/2851:2856,
1/Y/2902:2906		No text annotation
homologous
J3_7RQB_014
NA
J4_7ASP_0011/X/114:122,
1/X/246:250,
1/X/292:297,
1/X/319:320		No text annotation
J4_7ASP_0021/Y/271:272,
1/Y/416:421,
1/Y/445:452,
1/Y/467:470		No text annotation
homologous
J4_4WF9_001
J4_45801.6
J4_7ASP_0031/Y/644:648,
1/Y/668:673,
1/Y/680:684,
1/Y/694:701		No text annotation
J4_7ASP_0041/Y/1308:1313,
1/Y/1331:1332,
1/Y/1689:1692,
1/Y/2036:2037		No text annotation
homologous
J4_7A0S_004
J4_64571.5
J4_7ASP_0051/Y/1347:1351,
1/Y/1375:1380,
1/Y/1441:1442,
1/Y/1641:1648		No text annotation
J4_7ASP_0061/Y/1799:1803,
1/Y/1815:1819,
1/Y/1854:1857,
1/Y/2002:2006		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_7ASP_0071/Y/2312:2316,
1/Y/2370:2374,
1/Y/2397:2400,
1/Y/2407:2410		No text annotation
J4_7ASP_0081/Y/2669:2685,
1/Y/2690:2703,
1/Y/2758:2763,
1/Y/2796:2799		No text annotation
J5_7ASP_0081/Y/45:46,
1/Y/181:187,
1/Y/214:238,
1/Y/265:269,
1/Y/472:479		No text annotation
J5_7ASP_0021/Y/47:54,
1/Y/115:120,
1/Y/129:130,
1/Y/148:151,
1/Y/178:180		No text annotation
homologous
J5_4WF9_001
J5_01737.2
J5_7ASP_0031/Y/271:276,
1/Y/294:302,
1/Y/415:421,
1/Y/445:452,
1/Y/467:470		No text annotation
J5_7ASP_0041/Y/576:578,
1/Y/603:607,
1/Y/620:622,
1/Y/1299:1300,
1/Y/2044:2045		No text annotation
homologous
J5_4WF9_003
J5_43153.5
J5_7ASP_0051/Y/1718:1726,
1/Y/1750:1751,
1/Y/1778:1779,
1/Y/1783:1791,
1/Y/2015:2017		No text annotation
homologous
J5_4WF9_005
J5_62523.6
J5_7ASP_0091/Y/2084:2091,
1/Y/2473:2480,
1/Y/2527:2534,
1/Y/2609:2616,
1/Y/2632:2638		No text annotation
J5_7ASP_0071/Y/2101:2104,
1/Y/2270:2273,
1/Y/2285:2286,
1/Y/2308:2309,
1/Y/2454:2462		No text annotation
homologous
J5_7A0S_007
J5_39529.1
J7_7ASP_0011/Y/7:17,
1/Y/568:576,
1/Y/2045:2050,
1/Y/2067:2070,
1/Y/2652:2658,
1/Y/2814:2831,
1/Y/2909:2915		No text annotation
J10_7ASP_0011/Y/627:632,
1/Y/713:716,
1/Y/853:867,
1/Y/880:881,
1/Y/987:990,
1/Y/1015:1020,
1/Y/1031:1036,
1/Y/1207:1210,
1/Y/1223:1235,
1/Y/1288:1294		No text annotation

Problematic loops

#loop idProblemSequence
J3_7ASP_001No text annotation
J3_7ASP_002No text annotation
J3_7ASP_021No text annotation
J3_7ASP_022No text annotation
J3_7ASP_026No text annotation
J3_7ASP_015No text annotation
J5_7ASP_001No text annotation
J5_7ASP_006No text annotation

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