7ASP Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7ASP_001 | 1/3/36:42 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_7ASP_002 | 1/3/79:92 | No text annotation Not in a motif group | ||
| HL_7ASP_003 | 1/X/158:163 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_7ASP_004 | 1/X/267:276 | No text annotation Not in a motif group | ||
| HL_7ASP_005 | 1/X/303:310 | No text annotation Not in a motif group | ||
| HL_7ASP_006 | 1/X/330:340 | No text annotation Not in a motif group | ||
| HL_7ASP_007 | 1/X/387:392 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_7ASP_008 | 1/X/426:433 | No text annotation Not in a motif group | ||
| HL_7ASP_009 | 1/X/529:536 | No text annotation Not in a motif group | geometric HL_5J7L_151 HL_90617.2 | |
| HL_7ASP_010 | 1/X/600:655 | No text annotation Not in a motif group | ||
| HL_7ASP_011 | 1/X/697:706 | No text annotation Not in a motif group | ||
| HL_7ASP_012 | 1/X/794:804 | No text annotation Not in a motif group | ||
| HL_7ASP_014 | 1/X/872:877 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_7ASP_015 | 1/X/907:912 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
| HL_7ASP_016 | 1/X/1020:1029 | No text annotation Not in a motif group | ||
| HL_7ASP_017 | 1/X/1081:1118 | No text annotation Not in a motif group | ||
| HL_7ASP_018 | 1/X/1175:1183 | No text annotation Not in a motif group | geometric HL_2Y8Y_001 HL_20062.1 | |
| HL_7ASP_019 | 1/X/1270:1287 | No text annotation Not in a motif group | ||
| HL_7ASP_020 | 1/X/1324:1335 | No text annotation Not in a motif group | ||
| HL_7ASP_021 | 1/X/1363:1382 | No text annotation Not in a motif group | ||
| HL_7ASP_022 | 1/X/1451:1473 | No text annotation Not in a motif group | ||
| HL_7ASP_023 | 1/X/1526:1532 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_7ASP_024 | 1/Y/67:74 | No text annotation Not in a motif group | geometric HL_4WF9_001 HL_86769.3 | |
| HL_7ASP_025 | 1/Y/87:95 | No text annotation Not in a motif group | geometric HL_4TUW_002 HL_65572.2 | |
| HL_7ASP_026 | 1/Y/122:127 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
| HL_7ASP_027 | 1/Y/130:148 | No text annotation Not in a motif group | ||
| HL_7ASP_029 | 1/Y/197:204 | No text annotation Not in a motif group | geometric HL_4V9F_006 HL_06192.2 | |
| HL_7ASP_030 | 1/Y/249:255 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_7ASP_032 | 1/Y/348:355 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_7ASP_033 | 1/Y/370:378 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_7ASP_034 | 1/Y/427:439 | No text annotation Not in a motif group | ||
| HL_7ASP_035 | 1/Y/456:463 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_7ASP_036 | 1/Y/508:513 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_7ASP_037 | 1/Y/533:538 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_7ASP_038 | 1/Y/587:594 | No text annotation Not in a motif group | homologous HL_4WF9_017 HL_50318.1 | |
| HL_7ASP_039 | 1/Y/609:618 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_018 HL_89380.2 | |
| HL_7ASP_040 | 1/Y/655:661 | Other HL Not in a motif group | geometric HL_6UFG_005 HL_87030.2 | |
| HL_7ASP_041 | 1/Y/674:679 | GNRA Not in a motif group | homologous HL_4WF9_020 HL_42097.1 | |
| HL_7ASP_042 | 1/Y/686:692 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_7ASP_044 | 1/Y/789:798 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_7ASP_045 | 1/Y/823:831 | No text annotation Not in a motif group | ||
| HL_7ASP_046 | 1/Y/871:876 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_7ASP_048 | 1/Y/999:1006 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_7ASP_049 | 1/Y/1022:1029 | No text annotation Not in a motif group | homologous HL_4WF9_028 HL_64430.2 | |
| HL_7ASP_051 | 1/Y/1210:1223 | No text annotation Not in a motif group | ||
| HL_7ASP_052 | 1/Y/1260:1265 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
| HL_7ASP_053 | 1/Y/1318:1326 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_032 HL_89380.2 | |
| HL_7ASP_054 | 1/Y/1354:1373 | No text annotation Not in a motif group | ||
| HL_7ASP_055 | 1/Y/1400:1405 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_7ASP_056 | 1/Y/1426:1435 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_7ASP_058 | 1/Y/1612:1615 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_7ASP_059 | 1/Y/1656:1663 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_7ASP_060 | 1/Y/1673:1681 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_7ASP_061 | 1/Y/1735:1740 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_7ASP_062 | 1/Y/1761:1769 | No text annotation Not in a motif group | ||
| HL_7ASP_063 | 1/Y/1779:1783 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_7ASP_064 | 1/Y/1804:1814 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_7ASP_065 | 1/Y/1833:1838 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_7ASP_066 | 1/Y/1894:1901 | No text annotation Not in a motif group | homologous HL_4WF9_045 NA | |
| HL_7ASP_067 | 1/Y/1974:1986 | No text annotation Not in a motif group | ||
| HL_7ASP_068 | 1/Y/2054:2063 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_7ASP_070 | 1/Y/2236:2242 | No text annotation Not in a motif group | ||
| HL_7ASP_071 | 1/Y/2275:2283 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_7ASP_072 | 1/Y/2291:2303 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_7ASP_074 | 1/Y/2350:2359 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_7ASP_075 | 1/Y/2382:2389 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_7ASP_076 | 1/Y/2400:2407 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_7ASP_077 | 1/Y/2431:2440 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_7ASP_078 | 1/Y/2498:2506 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_7ASP_079 | 1/Y/2554:2563 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_7ASP_080 | 1/Y/2578:2584 | No text annotation Not in a motif group | ||
| HL_7ASP_081 | 1/Y/2621:2626 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_7ASP_083 | 1/Y/2727:2734 | No text annotation Not in a motif group | ||
| HL_7ASP_084 | 1/Y/2772:2786 | No text annotation Not in a motif group | homologous HL_7A0S_065 HL_56677.7 | |
| HL_7ASP_085 | 1/Y/2839:2847 | No text annotation Not in a motif group | homologous HL_4WF9_064 HL_27930.1 | |
| HL_7ASP_086 | 1/Y/2876:2881 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7ASP_013 | No text annotation | ||
| HL_7ASP_028 | No text annotation | ||
| HL_7ASP_031 | No text annotation | ||
| HL_7ASP_043 | No text annotation | ||
| HL_7ASP_047 | No text annotation | ||
| HL_7ASP_050 | No text annotation | ||
| HL_7ASP_057 | No text annotation | ||
| HL_7ASP_069 | No text annotation | ||
| HL_7ASP_073 | No text annotation | ||
| HL_7ASP_082 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7ASP_001 | 1/3/2:5, 1/3/110:113 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_7ASP_002 | 1/3/5:8, 1/3/107:110 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4WF9_110 IL_67743.1 | |
| IL_7ASP_003 | 1/3/14:16, 1/3/63:66 | No text annotation Not in a motif group | ||
| IL_7ASP_004 | 1/3/20:27, 1/3/53:59 | No text annotation Not in a motif group | ||
| IL_7ASP_005 | 1/3/28:29, 1/3/49:52 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_7ASP_006 | 1/3/32:36, 1/3/42:46 | Symmetric double minor groove platform Not in a motif group | geometric IL_5NS3_002 IL_58103.6 | |
| IL_7ASP_007 | 1/X/29:33, 1/X/560:563 | No text annotation Not in a motif group | ||
| IL_7ASP_008 | 1/X/128:131, 1/X/239:240 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_7ASP_009 | 1/X/132:138, 1/X/233:238 | No text annotation Not in a motif group | ||
| IL_7ASP_010 | 1/X/153:157, 1/X/164:168 | No text annotation Not in a motif group | ||
| IL_7ASP_011 | 1/X/250:255, 1/X/285:292 | No text annotation Not in a motif group | ||
| IL_7ASP_012 | 1/X/299:303, 1/X/310:317 | No text annotation Not in a motif group | ||
| IL_7ASP_013 | 1/X/328:330, 1/X/340:341 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_7ASP_014 | 1/X/375:377, 1/X/400:401 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_7ASP_015 | 1/X/379:383, 1/X/397:398 | C-loop Not in a motif group | homologous IL_6CZR_127 IL_75255.1 | |
| IL_7ASP_016 | 1/X/383:384, 1/X/395:397 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_7ASP_017 | 1/X/512:520, 1/X/547:549 | No text annotation Not in a motif group | ||
| IL_7ASP_018 | 1/X/522:529, 1/X/536:545 | No text annotation Not in a motif group | ||
| IL_7ASP_019 | 1/X/896:905, 1/X/914:921 | No text annotation Not in a motif group | ||
| IL_7ASP_020 | 1/X/935:938, 1/X/1400:1402 | No text annotation Not in a motif group | ||
| IL_7ASP_021 | 1/X/1003:1007, 1/X/1056:1057 | No text annotation Not in a motif group | ||
| IL_7ASP_022 | 1/X/1008:1020, 1/X/1029:1055 | No text annotation Not in a motif group | ||
| IL_7ASP_023 | 1/X/1059:1069, 1/X/1214:1221 | No text annotation Not in a motif group | ||
| IL_7ASP_024 | 1/X/1069:1072, 1/X/1208:1214 | No text annotation Not in a motif group | ||
| IL_7ASP_025 | 1/X/1072:1073, 1/X/1206:1208 | No text annotation Not in a motif group | ||
| IL_7ASP_026 | 1/X/1073:1075, 1/X/1204:1206 | No text annotation Not in a motif group | geometric IL_3RG5_002 IL_95997.1 | |
| IL_7ASP_027 | 1/X/1127:1175, 1/X/1183:1196 | No text annotation Not in a motif group | ||
| IL_7ASP_028 | 1/X/1265:1270, 1/X/1287:1294 | No text annotation Not in a motif group | ||
| IL_7ASP_029 | 1/X/1314:1319, 1/X/1340:1345 | No text annotation Not in a motif group | homologous IL_6CZR_164 NA | |
| IL_7ASP_030 | 1/X/1427:1433, 1/X/1490:1496 | No text annotation Not in a motif group | ||
| IL_7ASP_031 | 1/X/1435:1438, 1/X/1485:1488 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_432 IL_30621.2 | |
| IL_7ASP_032 | 1/X/1441:1446, 1/X/1478:1482 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_7ASP_033 | 1/X/1446:1448, 1/X/1476:1478 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_7ASP_034 | 1/X/1524:1526, 1/X/1532:1535 | No text annotation Not in a motif group | ||
| IL_7ASP_035 | 1/Y/5:7, 1/Y/2915:2917 | No text annotation Not in a motif group | geometric IL_4LFB_010 IL_95997.1 | |
| IL_7ASP_036 | 1/Y/42:44, 1/Y/480:483 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_003 IL_65006.1 | |
| IL_7ASP_037 | 1/Y/77:86, 1/Y/96:108 | No text annotation Not in a motif group | ||
| IL_7ASP_038 | 1/Y/187:189, 1/Y/212:214 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_7ASP_039 | 1/Y/190:197, 1/Y/204:211 | No text annotation Not in a motif group | ||
| IL_7ASP_040 | 1/Y/241:248, 1/Y/256:262 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_009 IL_04346.7 | |
| IL_7ASP_041 | 1/Y/276:278, 1/Y/292:294 | No text annotation Not in a motif group | geometric IL_1ZH5_001 IL_95997.1 | |
| IL_7ASP_042 | 1/Y/278:283, 1/Y/288:292 | No text annotation Not in a motif group | ||
| IL_7ASP_043 | 1/Y/305:306, 1/Y/409:412 | No text annotation Not in a motif group | ||
| IL_7ASP_044 | 1/Y/581:584, 1/Y/597:600 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_7ASP_045 | 1/Y/607:609, 1/Y/618:620 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_95997.1 | |
| IL_7ASP_046 | 1/Y/637:640, 1/Y/705:708 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.2 | |
| IL_7ASP_047 | 1/Y/649:653, 1/Y/663:667 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_7ASP_048 | 1/Y/716:723, 1/Y/844:853 | No text annotation Not in a motif group | ||
| IL_7ASP_049 | 1/Y/747:752, 1/Y/769:775 | No text annotation Not in a motif group | ||
| IL_7ASP_050 | 1/Y/783:785, 1/Y/802:803 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_7ASP_051 | 1/Y/882:885, 1/Y/982:986 | No text annotation Not in a motif group | ||
| IL_7ASP_052 | 1/Y/889:893, 1/Y/975:978 | No text annotation Not in a motif group | homologous IL_4WF9_029 IL_06300.1 | |
| IL_7ASP_053 | 1/Y/896:898, 1/Y/969:972 | No text annotation Not in a motif group | geometric IL_6ZDU_001 IL_23164.1 | |
| IL_7ASP_054 | 1/Y/901:907, 1/Y/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_4WF9_031 IL_93830.3 | |
| IL_7ASP_055 | 1/Y/907:908, 1/Y/958:960 | Minor groove platform Not in a motif group | homologous IL_4WF9_032 IL_42622.2 | |
| IL_7ASP_056 | 1/Y/909:913, 1/Y/954:957 | C-loop Not in a motif group | homologous IL_4WF9_033 IL_02509.1 | |
| IL_7ASP_057 | 1/Y/1038:1040, 1/Y/1203:1204 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_7ASP_058 | 1/Y/1042:1046, 1/Y/1197:1201 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
| IL_7ASP_059 | 1/Y/1048:1055, 1/Y/1194:1195 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_7ASP_060 | 1/Y/1055:1057, 1/Y/1193:1194 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_7ASP_061 | 1/Y/1061:1068, 1/Y/1184:1189 | No text annotation Not in a motif group | ||
| IL_7ASP_062 | 1/Y/1068:1074, 1/Y/1168:1184 | No text annotation Not in a motif group | geometric IL_4WF9_040 IL_50715.1 | |
| IL_7ASP_063 | 1/Y/1075:1078, 1/Y/1165:1167 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_7ASP_064 | 1/Y/1081:1083, 1/Y/1160:1162 | No text annotation Not in a motif group | homologous IL_4WF9_042 IL_95997.1 | |
| IL_7ASP_065 | 1/Y/1235:1237, 1/Y/1285:1288 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_7ASP_066 | 1/Y/1243:1246, 1/Y/1276:1279 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_100 IL_30621.2 | |
| IL_7ASP_067 | 1/Y/1246:1253, 1/Y/1272:1276 | Kink-turn Not in a motif group | geometric IL_4V9F_048 IL_70923.2 | |
| IL_7ASP_068 | 1/Y/1257:1259, 1/Y/1266:1268 | Intercalated cWW Not in a motif group | homologous IL_4WF9_047 IL_82842.2 | |
| IL_7ASP_069 | 1/Y/1300:1307, 1/Y/2038:2044 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_048 IL_04346.7 | |
| IL_7ASP_070 | 1/Y/1352:1354, 1/Y/1373:1374 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_7ASP_071 | 1/Y/1388:1392, 1/Y/1413:1417 | UAA/GAN Not in a motif group | homologous IL_4WF9_051 IL_89002.2 | |
| IL_7ASP_072 | 1/Y/1394:1398, 1/Y/1407:1411 | tSH-tHW-tHS Not in a motif group | homologous IL_7A0S_049 IL_17136.1 | |
| IL_7ASP_073 | 1/Y/1447:1452, 1/Y/1631:1636 | No text annotation Not in a motif group | ||
| IL_7ASP_075 | 1/Y/1461:1465, 1/Y/1624:1627 | Other IL Not in a motif group | homologous IL_4WF9_054 IL_04059.1 | |
| IL_7ASP_076 | 1/Y/1477:1517, 1/Y/1563:1607 | No text annotation Not in a motif group | ||
| IL_7ASP_077 | 1/Y/1518:1522, 1/Y/1558:1562 | No text annotation Not in a motif group | ||
| IL_7ASP_078 | 1/Y/1695:1700, 1/Y/2031:2033 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.2 | |
| IL_7ASP_079 | 1/Y/1707:1713, 1/Y/2020:2024 | No text annotation Not in a motif group | ||
| IL_7ASP_080 | 1/Y/1713:1718, 1/Y/2017:2020 | Intercalated tWH Not in a motif group | homologous IL_4WF9_065 IL_82842.2 | |
| IL_7ASP_081 | 1/Y/1730:1735, 1/Y/1740:1746 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7A0S_063 IL_65969.2 | |
| IL_7ASP_082 | 1/Y/1757:1761, 1/Y/1769:1772 | No text annotation Not in a motif group | ||
| IL_7ASP_083 | 1/Y/1797:1798, 1/Y/2007:2009 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_7ASP_084 | 1/Y/1825:1831, 1/Y/1840:1848 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_7ASP_085 | 1/Y/1864:1867, 1/Y/1929:1930 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_5J7L_314 IL_88739.1 | |
| IL_7ASP_086 | 1/Y/1867:1869, 1/Y/1925:1929 | No text annotation Not in a motif group | ||
| IL_7ASP_087 | 1/Y/1872:1877, 1/Y/1919:1922 | No text annotation Not in a motif group | ||
| IL_7ASP_088 | 1/Y/1877:1882, 1/Y/1914:1919 | No text annotation Not in a motif group | ||
| IL_7ASP_089 | 1/Y/1882:1890, 1/Y/1906:1914 | No text annotation Not in a motif group | ||
| IL_7ASP_090 | 1/Y/1890:1894, 1/Y/1901:1906 | No text annotation Not in a motif group | ||
| IL_7ASP_091 | 1/Y/1960:1961, 1/Y/1991:1994 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_318 IL_59677.2 | |
| IL_7ASP_092 | 1/Y/1961:1972, 1/Y/1988:1991 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_7ASP_093 | 1/Y/2076:2079, 1/Y/2644:2646 | No text annotation Not in a motif group | geometric IL_6DME_003 IL_63450.2 | |
| IL_7ASP_094 | 1/Y/2081:2083, 1/Y/2639:2642 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_7ASP_095 | 1/Y/2094:2096, 1/Y/2469:2470 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_7ASP_096 | 1/Y/2097:2098, 1/Y/2465:2468 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_7ASP_097 | 1/Y/2108:2110, 1/Y/2263:2266 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_082 IL_38958.7 | |
| IL_7ASP_098 | 1/Y/2111:2113, 1/Y/2260:2262 | No text annotation Not in a motif group | homologous IL_4WF9_083 IL_95997.1 | |
| IL_7ASP_099 | 1/Y/2123:2126, 1/Y/2217:2220 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.2 | |
| IL_7ASP_100 | 1/Y/2129:2132, 1/Y/2211:2214 | Self complementary Not in a motif group | geometric IL_3NDB_001 IL_30621.2 | |
| IL_7ASP_101 | 1/Y/2229:2231, 1/Y/2247:2248 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.2 | |
| IL_7ASP_102 | 1/Y/2377:2380, 1/Y/2391:2394 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_7ASP_103 | 1/Y/2428:2430, 1/Y/2441:2442 | Single bulged U Not in a motif group | homologous IL_4WF9_088 IL_83039.13 | |
| IL_7ASP_104 | 1/Y/2480:2481, 1/Y/2525:2527 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_7ASP_105 | 1/Y/2481:2482, 1/Y/2523:2525 | Major groove platform Not in a motif group | homologous IL_4WF9_090 IL_27635.1 | |
| IL_7ASP_106 | 1/Y/2484:2486, 1/Y/2520:2521 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_7ASP_107 | 1/Y/2486:2488, 1/Y/2516:2520 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_7ASP_108 | 1/Y/2493:2497, 1/Y/2507:2511 | Triple sheared Not in a motif group | homologous IL_7A0S_087 IL_56467.8 | |
| IL_7ASP_109 | 1/Y/2534:2535, 1/Y/2607:2609 | Major groove platform Not in a motif group | homologous IL_7A0S_088 IL_76223.2 | |
| IL_7ASP_110 | 1/Y/2537:2539, 1/Y/2601:2605 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4WF9_095 IL_90933.2 | |
| IL_7ASP_111 | 1/Y/2539:2540, 1/Y/2598:2601 | No text annotation Not in a motif group | homologous IL_4WF9_096 IL_71530.2 | |
| IL_7ASP_112 | 1/Y/2548:2550, 1/Y/2567:2571 | No text annotation Not in a motif group | ||
| IL_7ASP_113 | 1/Y/2618:2619, 1/Y/2628:2630 | Single bulged A Not in a motif group | homologous IL_5J7L_344 IL_37497.2 | |
| IL_7ASP_114 | 1/Y/2661:2667, 1/Y/2801:2811 | No text annotation Not in a motif group | ||
| IL_7ASP_115 | 1/Y/2707:2711, 1/Y/2752:2754 | C-loop Not in a motif group | homologous IL_4WF9_101 IL_63596.6 | |
| IL_7ASP_116 | 1/Y/2714:2719, 1/Y/2744:2749 | No text annotation Not in a motif group | ||
| IL_7ASP_117 | 1/Y/2722:2723, 1/Y/2738:2741 | Multiple bulged bases Not in a motif group | homologous IL_4WF9_103 IL_71530.2 | |
| IL_7ASP_118 | 1/Y/2763:2764, 1/Y/2794:2796 | No text annotation Not in a motif group | ||
| IL_7ASP_119 | 1/Y/2764:2770, 1/Y/2788:2794 | No text annotation Not in a motif group | ||
| IL_7ASP_120 | 1/Y/2858:2859, 1/Y/2898:2900 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_7ASP_121 | 1/Y/2863:2865, 1/Y/2891:2894 | No text annotation Not in a motif group | homologous IL_4WF9_107 IL_02284.5 | |
| IL_7ASP_122 | 1/Y/2867:2872, 1/Y/2885:2889 | No text annotation Not in a motif group | homologous IL_4WF9_108 IL_83162.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7ASP_074 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7ASP_002 | 1/X/952:961, 1/X/1241:1248, 1/X/1348:1352 | No text annotation Not in a motif group | ||
| J3_7ASP_003 | 1/X/1075:1081, 1/X/1118:1125, 1/X/1198:1204 | No text annotation Not in a motif group | ||
| J3_7ASP_004 | 1/X/1248:1252, 1/X/1307:1314, 1/X/1345:1348 | No text annotation Not in a motif group | ||
| J3_7ASP_005 | 1/Y/56:67, 1/Y/74:76, 1/Y/109:113 | No text annotation Not in a motif group | ||
| J3_7ASP_006 | 1/Y/272:276, 1/Y/294:302, 1/Y/415:416 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_7ASP_007 | 1/Y/728:734, 1/Y/818:823, 1/Y/831:839 | No text annotation Not in a motif group | ||
| J3_7ASP_008 | 1/Y/742:745, 1/Y/777:781, 1/Y/805:810 | No text annotation Not in a motif group | ||
| J3_7ASP_009 | 1/Y/1335:1340, 1/Y/1669:1671, 1/Y/1683:1686 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_7ASP_010 | 1/Y/1343:1346, 1/Y/1649:1655, 1/Y/1664:1666 | No text annotation Not in a motif group | homologous J3_5J7L_042 NA | |
| J3_7ASP_011 | 1/Y/1381:1386, 1/Y/1419:1422, 1/Y/1439:1440 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_7ASP_012 | 1/Y/1860:1863, 1/Y/1931:1960, 1/Y/1994:1999 | No text annotation Not in a motif group | ||
| J3_7ASP_013 | 1/Y/2118:2120, 1/Y/2223:2228, 1/Y/2249:2255 | No text annotation Not in a motif group | homologous J3_4WF9_007 NA | |
| J3_7ASP_014 | 1/Y/2309:2312, 1/Y/2410:2423, 1/Y/2447:2454 | No text annotation Not in a motif group | ||
| J3_7ASP_016 | 1/Y/2544:2547, 1/Y/2572:2574, 1/Y/2588:2594 | No text annotation Not in a motif group | homologous J3_4WF9_009 NA | |
| J3_7ASP_017 | 1/Y/2834:2835, 1/Y/2851:2856, 1/Y/2902:2906 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7ASP_001 | No text annotation | ||
| J3_7ASP_015 | No text annotation |
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