1KQS | Motifs

Valid loops

#	loop id	location	annotation	motif
1	HL_1KQS_001 ➜	1/0/55:64	NA	NA
2	HL_1KQS_002 ➜	1/0/83:91	NA	NA
3	HL_1KQS_003 ➜	1/0/118:122	NA	NA
4	HL_1KQS_005 ➜	1/0/136:142	NA	NA
5	HL_1KQS_006 ➜	1/0/164:171	NA	NA
6	HL_1KQS_007 ➜	1/0/195:201	NA	NA
7	HL_1KQS_008 ➜	1/0/217:223	NA	NA
8	HL_1KQS_009 ➜	1/0/252:257	NA	NA
9	HL_1KQS_010 ➜	1/0/312:319	NA	NA
10	HL_1KQS_011 ➜	1/0/326:330	NA	NA
11	HL_1KQS_012 ➜	1/0/334:342	NA	NA
12	HL_1KQS_013 ➜	1/0/390:399	NA	NA
13	HL_1KQS_014 ➜	1/0/416:424	NA	NA
14	HL_1KQS_015 ➜	1/0/468:473	NA	NA
15	HL_1KQS_016 ➜	1/0/493:499	NA	NA
16	HL_1KQS_017 ➜	1/0/576:581	NA	NA
17	HL_1KQS_019 ➜	1/0/670:676	NA	NA
18	HL_1KQS_020 ➜	1/0/690:695	NA	NA
19	HL_1KQS_022 ➜	1/0/733:738	NA	NA
20	HL_1KQS_024 ➜	1/0/837:846	NA	NA
21	HL_1KQS_025 ➜	1/0/872:878	NA	NA
22	HL_1KQS_026 ➜	1/0/919:924	NA	NA
23	HL_1KQS_028 ➜	1/0/1054:1060	NA	NA
24	HL_1KQS_029 ➜	1/0/1076:1083	NA	NA
25	HL_1KQS_032 ➜	1/0/1274:1282	NA	NA
26	HL_1KQS_033 ➜	1/0/1326:1331	NA	NA
27	HL_1KQS_034 ➜	1/0/1387:1395	NA	NA
28	HL_1KQS_035 ➜	1/0/1430:1436	NA	NA
29	HL_1KQS_036 ➜	1/0/1468:1474	NA	NA
30	HL_1KQS_037 ➜	1/0/1498:1507	NA	NA
31	HL_1KQS_039 ➜	1/0/1594:1600	NA	NA
32	HL_1KQS_040 ➜	1/0/1628:1633	NA	NA
33	HL_1KQS_041 ➜	1/0/1651:1655	NA	NA
34	HL_1KQS_042 ➜	1/0/1687:1694	NA	NA
35	HL_1KQS_043 ➜	1/0/1705:1713	NA	NA
36	HL_1KQS_044 ➜	1/0/1769:1774	NA	NA
37	HL_1KQS_045 ➜	1/0/1793:1799	NA	NA
38	HL_1KQS_046 ➜	1/0/1808:1812	NA	NA
39	HL_1KQS_047 ➜	1/0/1833:1843	NA	NA
40	HL_1KQS_048 ➜	1/0/1862:1867	NA	NA
41	HL_1KQS_049 ➜	1/0/1916:1923	NA	NA
42	HL_1KQS_051 ➜	1/0/1990:1998	NA	NA
43	HL_1KQS_052 ➜	1/0/2068:2077	NA	NA
44	HL_1KQS_055 ➜	1/0/2281:2289	NA	NA
45	HL_1KQS_056 ➜	1/0/2298:2310	NA	NA
46	HL_1KQS_058 ➜	1/0/2358:2365	NA	NA
47	HL_1KQS_059 ➜	1/0/2389:2399	NA	NA
48	HL_1KQS_060 ➜	1/0/2411:2416	NA	NA
49	HL_1KQS_061 ➜	1/0/2442:2450	NA	NA
50	HL_1KQS_062 ➜	1/0/2506:2514	NA	NA
51	HL_1KQS_063 ➜	1/0/2563:2570	NA	NA
52	HL_1KQS_064 ➜	1/0/2585:2593	NA	NA
53	HL_1KQS_065 ➜	1/0/2629:2634	NA	NA
54	HL_1KQS_066 ➜	1/0/2695:2700	NA	NA
55	HL_1KQS_067 ➜	1/0/2737:2742	NA	NA
56	HL_1KQS_068 ➜	1/0/2780:2794	NA	NA
57	HL_1KQS_069 ➜	1/0/2836:2844	NA	NA
58	HL_1KQS_070 ➜	1/0/2876:2881	NA	NA
59	HL_1KQS_071 ➜	1/9/3037:3043	NA	NA
60	HL_1KQS_072 ➜	1/9/3089:3094	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_1KQS_004 ➜	missing nts	NA
2	HL_1KQS_018 ➜	missing nts	NA
3	HL_1KQS_021 ➜	missing nts	NA
4	HL_1KQS_023 ➜	all high RSRZ	NA
5	HL_1KQS_027 ➜	missing nts	NA
6	HL_1KQS_030 ➜	missing nts	NA
7	HL_1KQS_031 ➜	missing nts	NA
8	HL_1KQS_038 ➜	missing nts	NA
9	HL_1KQS_050 ➜	missing nts	NA
10	HL_1KQS_053 ➜	missing nts	NA
11	HL_1KQS_054 ➜	all high RSRZ	NA
12	HL_1KQS_057 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_1KQS_001 ➜	1/0/21:27,1/0/516:522	NA	NA
2	IL_1KQS_002 ➜	1/0/33:34,1/0/448:450	NA	NA
3	IL_1KQS_003 ➜	1/0/39:41,1/0/440:443	NA	NA
4	IL_1KQS_004 ➜	1/0/77:81,1/0/93:100	NA	NA
5	IL_1KQS_005 ➜	1/0/153:154,1/0/182:184	NA	NA
6	IL_1KQS_006 ➜	1/0/158:164,1/0/171:178	NA	NA
7	IL_1KQS_007 ➜	1/0/210:216,1/0/224:229	NA	NA
8	IL_1KQS_008 ➜	1/0/245:248,1/0/265:266	NA	NA
9	IL_1KQS_009 ➜	1/0/248:249,1/0/260:265	NA	NA
10	IL_1KQS_010 ➜	1/0/274:275,1/0/374:376	NA	NA
11	IL_1KQS_011 ➜	1/0/280:287,1/0/365:369	NA	NA
12	IL_1KQS_012 ➜	1/0/287:290,1/0/362:365	NA	NA
13	IL_1KQS_013 ➜	1/0/290:296,1/0/355:362	NA	NA
14	IL_1KQS_014 ➜	1/0/307:309,1/0/322:323	NA	NA
15	IL_1KQS_015 ➜	1/0/487:491,1/0/501:515	NA	NA
16	IL_1KQS_016 ➜	1/0/548:553,1/0/606:608	NA	NA
17	IL_1KQS_017 ➜	1/0/554:555,1/0/602:605	NA	NA
18	IL_1KQS_018 ➜	1/0/558:561,1/0/596:599	NA	NA
19	IL_1KQS_019 ➜	1/0/562:567,1/0/591:595	NA	NA
20	IL_1KQS_020 ➜	1/0/567:572,1/0/585:591	NA	NA
21	IL_1KQS_021 ➜	1/0/663:667,1/0/679:683	NA	NA
22	IL_1KQS_022 ➜	1/0/699:702,1/0/726:727	NA	NA
23	IL_1KQS_023 ➜	1/0/705:709,1/0/719:723	NA	NA
24	IL_1KQS_024 ➜	1/0/763:765,1/0/899:901	NA	NA
25	IL_1KQS_025 ➜	1/0/765:769,1/0/892:899	NA	NA
26	IL_1KQS_026 ➜	1/0/788:789,1/0/856:858	NA	NA
27	IL_1KQS_027 ➜	1/0/793:794,1/0/819:821	NA	NA
28	IL_1KQS_028 ➜	1/0/794:798,1/0/815:819	NA	NA
29	IL_1KQS_029 ➜	1/0/830:833,1/0/849:851	NA	NA
30	IL_1KQS_030 ➜	1/0/834:836,1/0/847:848	NA	NA
31	IL_1KQS_031 ➜	1/0/868:870,1/0/880:884	NA	NA
32	IL_1KQS_032 ➜	1/0/936:941,1/0/1025:1034	NA	NA
33	IL_1KQS_033 ➜	1/0/942:944,1/0/1023:1024	NA	NA
34	IL_1KQS_034 ➜	1/0/952:956,1/0/1011:1015	NA	NA
35	IL_1KQS_035 ➜	1/0/956:957,1/0/1009:1011	NA	NA
36	IL_1KQS_036 ➜	1/0/958:964,1/0/1004:1008	NA	NA
37	IL_1KQS_037 ➜	1/0/965:968,1/0/1000:1003	NA	NA
38	IL_1KQS_038 ➜	1/0/1095:1099,1/0/1257:1261	NA	NA
39	IL_1KQS_039 ➜	1/0/1101:1108,1/0/1254:1255	NA	NA
40	IL_1KQS_040 ➜	1/0/1108:1110,1/0/1253:1254	NA	NA
41	IL_1KQS_041 ➜	1/0/1115:1121,1/0/1243:1248	NA	NA
42	IL_1KQS_042 ➜	1/0/1136:1138,1/0/1225:1226	NA	NA
43	IL_1KQS_043 ➜	1/0/1147:1155,1/0/1212:1216	NA	NA
44	IL_1KQS_045 ➜	1/0/1269:1270,1/0/1286:1289	NA	NA
45	IL_1KQS_046 ➜	1/0/1301:1303,1/0/1351:1354	NA	NA
46	IL_1KQS_047 ➜	1/0/1303:1305,1/0/1349:1351	NA	NA
47	IL_1KQS_048 ➜	1/0/1312:1319,1/0/1338:1342	NA	NA
48	IL_1KQS_049 ➜	1/0/1367:1373,1/0/2052:2057	NA	NA
49	IL_1KQS_050 ➜	1/0/1416:1419,1/0/1678:1679	NA	NA
50	IL_1KQS_051 ➜	1/0/1425:1429,1/0/1437:1439	NA	NA
51	IL_1KQS_052 ➜	1/0/1456:1460,1/0/1483:1489	NA	NA
52	IL_1KQS_053 ➜	1/0/1465:1467,1/0/1475:1478	NA	NA
53	IL_1KQS_054 ➜	1/0/1521:1529,1/0/1662:1665	NA	NA
54	IL_1KQS_055 ➜	1/0/1542:1546,1/0/1639:1643	NA	NA
55	IL_1KQS_056 ➜	1/0/1570:1574,1/0/1622:1627	NA	NA
56	IL_1KQS_057 ➜	1/0/1578:1583,1/0/1612:1618	NA	NA
57	IL_1KQS_058 ➜	1/0/1587:1592,1/0/1602:1608	NA	NA
58	IL_1KQS_059 ➜	1/0/1728:1734,1/0/2045:2047	NA	NA
59	IL_1KQS_060 ➜	1/0/1741:1743,1/0/2036:2038	NA	NA
60	IL_1KQS_061 ➜	1/0/1744:1747,1/0/2034:2035	NA	NA
61	IL_1KQS_062 ➜	1/0/1747:1752,1/0/2031:2034	NA	NA
62	IL_1KQS_063 ➜	1/0/1764:1769,1/0/1774:1780	NA	NA
63	IL_1KQS_064 ➜	1/0/1826:1827,1/0/2021:2023	NA	NA
64	IL_1KQS_065 ➜	1/0/1854:1860,1/0/1869:1877	NA	NA
65	IL_1KQS_066 ➜	1/0/1893:1896,1/0/1943:1944	NA	NA
66	IL_1KQS_067 ➜	1/0/1897:1898,1/0/1939:1942	NA	NA
67	IL_1KQS_068 ➜	1/0/1902:1905,1/0/1934:1935	NA	NA
68	IL_1KQS_069 ➜	1/0/1907:1913,1/0/1926:1932	NA	NA
69	IL_1KQS_070 ➜	1/0/1974:1975,1/0/2005:2008	NA	NA
70	IL_1KQS_071 ➜	1/0/1975:1986,1/0/2002:2005	NA	NA
71	IL_1KQS_072 ➜	1/0/2090:2093,1/0/2652:2654	NA	NA
72	IL_1KQS_073 ➜	1/0/2095:2097,1/0/2647:2650	NA	NA
73	IL_1KQS_074 ➜	1/0/2108:2110,1/0/2477:2478	NA	NA
74	IL_1KQS_075 ➜	1/0/2111:2112,1/0/2473:2476	NA	NA
75	IL_1KQS_076 ➜	1/0/2122:2124,1/0/2269:2272	NA	NA
76	IL_1KQS_077 ➜	1/0/2279:2280,1/0/2290:2292	NA	NA
77	IL_1KQS_078 ➜	1/0/2331:2333,1/0/2351:2355	NA	NA
78	IL_1KQS_079 ➜	1/0/2436:2438,1/0/2454:2455	NA	NA
79	IL_1KQS_080 ➜	1/0/2489:2490,1/0/2531:2533	NA	NA
80	IL_1KQS_081 ➜	1/0/2492:2494,1/0/2528:2529	NA	NA
81	IL_1KQS_082 ➜	1/0/2494:2496,1/0/2524:2528	NA	NA
82	IL_1KQS_083 ➜	1/0/2501:2505,1/0/2515:2519	NA	NA
83	IL_1KQS_084 ➜	1/0/2542:2543,1/0/2615:2617	NA	NA
84	IL_1KQS_085 ➜	1/0/2545:2547,1/0/2609:2613	NA	NA
85	IL_1KQS_086 ➜	1/0/2547:2548,1/0/2606:2609	NA	NA
86	IL_1KQS_087 ➜	1/0/2557:2558,1/0/2575:2578	NA	NA
87	IL_1KQS_088 ➜	1/0/2626:2627,1/0/2636:2638	NA	NA
88	IL_1KQS_089 ➜	1/0/2672:2676,1/0/2809:2817	NA	NA
89	IL_1KQS_090 ➜	1/0/2689:2695,1/0/2700:2705	NA	NA
90	IL_1KQS_091 ➜	1/0/2717:2721,1/0/2761:2763	NA	NA
91	IL_1KQS_092 ➜	1/0/2724:2728,1/0/2754:2758	NA	NA
92	IL_1KQS_093 ➜	1/0/2732:2733,1/0/2746:2750	NA	NA
93	IL_1KQS_094 ➜	1/0/2772:2777,1/0/2797:2802	NA	NA
94	IL_1KQS_095 ➜	1/0/2855:2857,1/0/2900:2903	NA	NA
95	IL_1KQS_096 ➜	1/0/2860:2861,1/0/2895:2897	NA	NA
96	IL_1KQS_097 ➜	1/0/2864:2869,1/0/2888:2892	NA	NA
97	IL_1KQS_098 ➜	1/0/2873:2876,1/0/2881:2884	NA	NA
98	IL_1KQS_099 ➜	1/9/3015:3016,1/9/3064:3066	NA	NA
99	IL_1KQS_100 ➜	1/9/3021:3028,1/9/3054:3059	NA	NA
100	IL_1KQS_101 ➜	1/9/3029:3030,1/9/3050:3053	NA	NA
101	IL_1KQS_102 ➜	1/9/3033:3037,1/9/3043:3047	NA	NA
102	IL_1KQS_103 ➜	1/9/3075:3081,1/9/3101:3106	NA	NA
103	IL_1KQS_104 ➜	1/9/3086:3088,1/9/3095:3096	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_1KQS_044 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_1KQS_001 ➜	1/0/240:244,1/0/267:273,1/0/377:379	NA	NA
2	J3_1KQS_002 ➜	1/0/774:780,1/0/866:868,1/0/884:887	NA	NA
3	J3_1KQS_003 ➜	1/0/789:791,1/0/823:828,1/0/853:856	NA	NA
4	J3_1KQS_005 ➜	1/0/1404:1409,1/0/1700:1703,1/0/1715:1718	NA	NA
5	J3_1KQS_006 ➜	1/0/1412:1415,1/0/1680:1686,1/0/1695:1697	NA	NA
6	J3_1KQS_007 ➜	1/0/2131:2134,1/0/2241:2245,1/0/2256:2262	NA	NA
7	J3_1KQS_008 ➜	1/0/2329:2331,1/0/2355:2357,1/0/2366:2371	NA	NA
8	J3_1KQS_009 ➜	1/0/2552:2555,1/0/2580:2583,1/0/2595:2602	NA	NA
9	J3_1KQS_010 ➜	1/9/3009:3014,1/9/3067:3071,1/9/3110:3114	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_1KQS_004 ➜	missing nts	NA

1KQS Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops