5JUT Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5JUT_001 | 1/A/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_5JUT_002 | 1/A/70:81 | No text annotation Not in a motif group | homologous HL_4V88_187 HL_40069.1 | |
| HL_5JUT_003 | 1/A/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_5JUT_004 | 1/A/190:195 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_5JUT_005 | 1/A/230:235 | No text annotation Not in a motif group | geometric HL_4O26_001 HL_56691.2 | |
| HL_5JUT_006 | 1/A/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_5JUT_007 | 1/A/276:279 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_5JUT_008 | 1/A/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_5JUT_009 | 1/A/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_5JUT_010 | 1/A/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_5JUT_011 | 1/A/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_5JUT_012 | 1/A/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_5JUT_013 | 1/A/485:502 | No text annotation Not in a motif group | ||
| HL_5JUT_014 | 1/A/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_5JUT_015 | 1/A/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_5JUT_017 | 1/A/764:772 | No text annotation Not in a motif group | ||
| HL_5JUT_018 | 1/A/776:784 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_86373.2 | |
| HL_5JUT_019 | 1/A/829:843 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_5JUT_020 | 1/A/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_5JUT_021 | 1/A/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_5JUT_022 | 1/A/997:1007 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_5JUT_023 | 1/A/1055:1064 | No text annotation Not in a motif group | ||
| HL_5JUT_024 | 1/A/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_5JUT_025 | 1/A/1121:1126 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_5JUT_026 | 1/A/1188:1197 | No text annotation Not in a motif group | geometric HL_4RUM_001 HL_73530.2 | |
| HL_5JUT_027 | 1/A/1238:1247 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_5JUT_028 | 1/A/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_5JUT_029 | 1/A/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_5JUT_030 | 1/A/1359:1364 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
| HL_5JUT_031 | 1/A/1396:1402 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_5JUT_032 | 1/A/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_5JUT_033 | 1/A/1549:1562 | No text annotation Not in a motif group | ||
| HL_5JUT_034 | 1/A/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_5JUT_036 | 1/A/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_5JUT_037 | 1/B/38:45 | No text annotation Not in a motif group | homologous HL_8C3A_001 HL_06192.2 | |
| HL_5JUT_038 | 1/B/69:74 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_5JUT_039 | 1/B/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_5JUT_040 | 1/B/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_98426.1 | |
| HL_5JUT_041 | 1/B/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_5JUT_042 | 1/B/208:212 | No text annotation Not in a motif group | homologous HL_8C3A_006 HL_98984.2 | |
| HL_5JUT_043 | 1/B/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_5JUT_044 | 1/B/278:287 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_5JUT_045 | 1/B/303:312 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.2 | |
| HL_5JUT_046 | 1/B/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_5JUT_047 | 1/B/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_5JUT_049 | 1/B/543:548 | No text annotation Not in a motif group | homologous HL_5TBW_012 HL_86373.2 | |
| HL_5JUT_050 | 1/B/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_5JUT_051 | 1/B/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_5JUT_052 | 1/B/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_5JUT_053 | 1/B/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_5JUT_054 | 1/B/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_5JUT_055 | 1/B/763:768 | No text annotation Not in a motif group | homologous HL_5TBW_018 HL_34168.2 | |
| HL_5JUT_056 | 1/B/844:849 | No text annotation Not in a motif group | homologous HL_8C3A_019 HL_42097.1 | |
| HL_5JUT_057 | 1/B/876:885 | No text annotation Not in a motif group | homologous HL_8C3A_020 HL_39334.6 | |
| HL_5JUT_058 | 1/B/910:918 | No text annotation Not in a motif group | homologous HL_8C3A_021 HL_33817.1 | |
| HL_5JUT_059 | 1/B/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_5JUT_060 | 1/B/1023:1029 | No text annotation Not in a motif group | ||
| HL_5JUT_061 | 1/B/1076:1083 | No text annotation Not in a motif group | geometric HL_5TBW_024 HL_71554.2 | |
| HL_5JUT_062 | 1/B/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_5JUT_063 | 1/B/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_5JUT_064 | 1/B/1239:1249 | No text annotation Not in a motif group | homologous HL_8C3A_027 HL_07145.1 | |
| HL_5JUT_065 | 1/B/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_5JUT_066 | 1/B/1347:1357 | No text annotation Not in a motif group | geometric HL_4OOG_001 HL_65572.2 | |
| HL_5JUT_067 | 1/B/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_5JUT_068 | 1/B/1462:1470 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_89380.2 | |
| HL_5JUT_069 | 1/B/1506:1512 | No text annotation Not in a motif group | homologous HL_8C3A_032 HL_46680.1 | |
| HL_5JUT_070 | 1/B/1544:1549 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_5JUT_071 | 1/B/1566:1572 | No text annotation Not in a motif group | ||
| HL_5JUT_072 | 1/B/1599:1608 | No text annotation Not in a motif group | homologous HL_8C3A_035 HL_69023.2 | |
| HL_5JUT_073 | 1/B/1634:1639 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_42097.1 | |
| HL_5JUT_074 | 1/B/1680:1688 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_60812.1 | |
| HL_5JUT_075 | 1/B/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_5JUT_076 | 1/B/1759:1766 | No text annotation Not in a motif group | geometric HL_5AH5_007 HL_38927.2 | |
| HL_5JUT_077 | 1/B/1792:1796 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_38927.2 | |
| HL_5JUT_078 | 1/B/1844:1851 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_5JUT_079 | 1/B/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_5JUT_080 | 1/B/1923:1928 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_5JUT_082 | 1/B/2110:2114 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_5JUT_083 | 1/B/2135:2145 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.5 | |
| HL_5JUT_084 | 1/B/2164:2170 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_5JUT_085 | 1/B/2220:2225 | No text annotation Not in a motif group | homologous HL_8C3A_048 HL_42097.1 | |
| HL_5JUT_086 | 1/B/2253:2263 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_5JUT_087 | 1/B/2292:2300 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_51824.1 | |
| HL_5JUT_088 | 1/B/2335:2339 | No text annotation Not in a motif group | ||
| HL_5JUT_089 | 1/B/2369:2378 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_5JUT_090 | 1/B/2469:2476 | No text annotation Not in a motif group | ||
| HL_5JUT_091 | 1/B/2535:2544 | No text annotation Not in a motif group | ||
| HL_5JUT_092 | 1/B/2568:2573 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_5JUT_093 | 1/B/2616:2624 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_53171.2 | |
| HL_5JUT_094 | 1/B/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_5JUT_095 | 1/B/2673:2681 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_5JUT_096 | 1/B/2693:2700 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_5JUT_097 | 1/B/2723:2733 | tRNA anticodon loop Not in a motif group | geometric HL_1J1U_002 HL_53597.2 | |
| HL_5JUT_098 | 1/B/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_5JUT_099 | 1/B/2776:2784 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.1 | |
| HL_5JUT_100 | 1/B/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_5JUT_101 | 1/B/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_5JUT_102 | 1/B/2920:2926 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_5JUT_103 | 1/B/2963:2968 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_42097.1 | |
| HL_5JUT_104 | 1/B/3025:3030 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_42097.1 | |
| HL_5JUT_105 | 1/B/3067:3074 | No text annotation Not in a motif group | ||
| HL_5JUT_106 | 1/B/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_5JUT_107 | 1/B/3194:3197 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_5JUT_108 | 1/B/3240:3247 | No text annotation Not in a motif group | ||
| HL_5JUT_109 | 1/B/3303:3311 | No text annotation Not in a motif group | geometric HL_7RQB_057 HL_09136.1 | |
| HL_5JUT_110 | 1/B/3350:3353 | No text annotation Not in a motif group | homologous HL_8C3A_072 HL_53837.1 | |
| HL_5JUT_111 | 1/C/68:91 | No text annotation Not in a motif group | ||
| HL_5JUT_112 | 1/C/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_5JUT_113 | 1/C/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_5JUT_114 | 1/D/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_87939.1 | |
| HL_5JUT_115 | 1/D/88:93 | No text annotation Not in a motif group | homologous HL_7A0S_070 HL_42097.1 | |
| HL_5JUT_118 | 1/EC/6862:6868 | No text annotation Not in a motif group | ||
| HL_5JUT_119 | 1/EC/6903:6910 | No text annotation Not in a motif group | geometric HL_4V84_034 HL_53171.2 | |
| HL_5JUT_120 | 1/EC/6924:6929 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5JUT_016 | No text annotation | ||
| HL_5JUT_035 | No text annotation | ||
| HL_5JUT_048 | No text annotation | ||
| HL_5JUT_081 | No text annotation | ||
| HL_5JUT_116 | No text annotation | ||
| HL_5JUT_117 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5JUT_001 | 1/A/24:26, 1/A/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_5JUT_002 | 1/A/35:37, 1/A/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_5JUT_003 | 1/A/37:41, 1/A/466:471 | No text annotation Not in a motif group | homologous IL_4V88_386 IL_41507.1 | |
| IL_5JUT_004 | 1/A/42:48, 1/A/431:433 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_5JUT_005 | 1/A/50:52, 1/A/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_5JUT_006 | 1/A/57:63, 1/A/87:90 | No text annotation Not in a motif group | ||
| IL_5JUT_007 | 1/A/64:69, 1/A/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_5JUT_008 | 1/A/109:112, 1/A/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_5JUT_009 | 1/A/113:116, 1/A/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_5JUT_010 | 1/A/117:122, 1/A/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_5JUT_011 | 1/A/143:149, 1/A/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_5JUT_012 | 1/A/150:152, 1/A/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_5F5F_003 IL_51629.2 | |
| IL_5JUT_013 | 1/A/186:189, 1/A/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_5JUT_014 | 1/A/204:206, 1/A/259:263 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.2 | |
| IL_5JUT_015 | 1/A/206:208, 1/A/257:259 | No text annotation Not in a motif group | geometric IL_3U4M_001 IL_95997.1 | |
| IL_5JUT_016 | 1/A/265:267, 1/A/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_5JUT_017 | 1/A/270:273, 1/A/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_5JUT_018 | 1/A/274:276, 1/A/279:282 | No text annotation Not in a motif group | geometric IL_7A0S_026 IL_51629.2 | |
| IL_5JUT_019 | 1/A/311:316, 1/A/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_5JUT_020 | 1/A/318:323, 1/A/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_48100.2 | |
| IL_5JUT_021 | 1/A/363:365, 1/A/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_5JUT_022 | 1/A/389:391, 1/A/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_5JUT_023 | 1/A/411:413, 1/A/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_5JUT_024 | 1/A/439:441, 1/A/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_5JUT_025 | 1/A/443:447, 1/A/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_5JUT_026 | 1/A/447:448, 1/A/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_5JUT_027 | 1/A/480:483, 1/A/504:508 | No text annotation Not in a motif group | ||
| IL_5JUT_028 | 1/A/517:518, 1/A/533:535 | Minor groove platform Not in a motif group | geometric IL_4LFB_004 IL_93353.1 | |
| IL_5JUT_029 | 1/A/518:520, 1/A/532:533 | Minor groove platform Not in a motif group | homologous IL_4V88_412 IL_93353.1 | |
| IL_5JUT_030 | 1/A/550:557, 1/A/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_5JUT_031 | 1/A/557:559, 1/A/586:587 | Single bulged U Not in a motif group | homologous IL_4V88_414 IL_83039.13 | |
| IL_5JUT_032 | 1/A/562:568, 1/A/575:583 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_5JUT_033 | 1/A/616:622, 1/A/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_5JUT_034 | 1/A/624:626, 1/A/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_5JUT_035 | 1/A/627:631, 1/A/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_5JUT_036 | 1/A/646:648, 1/A/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
| IL_5JUT_037 | 1/A/651:657, 1/A/677:683 | No text annotation Not in a motif group | ||
| IL_5JUT_038 | 1/A/746:747, 1/A/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_5JUT_039 | 1/A/748:750, 1/A/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_5JUT_040 | 1/A/751:759, 1/A/791:798 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_5JUT_041 | 1/A/865:866, 1/A/962:965 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_5JUT_042 | 1/A/867:869, 1/A/958:961 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_5JUT_043 | 1/A/871:873, 1/A/954:956 | No text annotation Not in a motif group | geometric IL_5TBW_068 IL_95997.1 | |
| IL_5JUT_044 | 1/A/874:878, 1/A/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_5JUT_045 | 1/A/886:890, 1/A/922:926 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_5JUT_046 | 1/A/893:899, 1/A/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_5JUT_047 | 1/A/985:990, 1/A/1014:1016 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
| IL_5JUT_048 | 1/A/990:994, 1/A/1010:1014 | tSH-tHW-tHS Not in a motif group | geometric IL_4LFB_033 IL_17136.1 | |
| IL_5JUT_049 | 1/A/1034:1036, 1/A/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_5JUT_050 | 1/A/1041:1044, 1/A/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_5JUT_051 | 1/A/1051:1053, 1/A/1066:1067 | Single bulged U Not in a motif group | geometric IL_2A64_002 IL_83039.13 | |
| IL_5JUT_052 | 1/A/1111:1119, 1/A/1128:1134 | 9x7 Sarcin-Ricin with inserted C; G-bulge Not in a motif group | geometric IL_6CZR_146 IL_68633.1 | |
| IL_5JUT_053 | 1/A/1146:1147, 1/A/1630:1632 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_5JUT_054 | 1/A/1149:1151, 1/A/1627:1628 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_5JUT_055 | 1/A/1157:1160, 1/A/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_5JUT_056 | 1/A/1173:1175, 1/A/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_5JUT_057 | 1/A/1178:1179, 1/A/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_5JUT_058 | 1/A/1213:1215, 1/A/1448:1450 | No text annotation Not in a motif group | geometric IL_7A0S_011 IL_95997.1 | |
| IL_5JUT_059 | 1/A/1224:1230, 1/A/1257:1259 | No text annotation Not in a motif group | ||
| IL_5JUT_060 | 1/A/1230:1233, 1/A/1252:1257 | No text annotation Not in a motif group | ||
| IL_5JUT_061 | 1/A/1234:1237, 1/A/1248:1251 | No text annotation Not in a motif group | ||
| IL_5JUT_062 | 1/A/1268:1270, 1/A/1440:1441 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_5JUT_063 | 1/A/1272:1276, 1/A/1436:1438 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_5JUT_064 | 1/A/1276:1278, 1/A/1430:1436 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_5JUT_065 | 1/A/1280:1281, 1/A/1426:1428 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_5JUT_066 | 1/A/1290:1292, 1/A/1323:1325 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_5JUT_067 | 1/A/1306:1308, 1/A/1317:1318 | Minor groove platform Not in a motif group | geometric IL_6DTD_003 IL_42622.2 | |
| IL_5JUT_068 | 1/A/1339:1342, 1/A/1383:1385 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_5JUT_069 | 1/A/1345:1349, 1/A/1376:1380 | No text annotation Not in a motif group | ||
| IL_5JUT_070 | 1/A/1352:1354, 1/A/1369:1373 | No text annotation Not in a motif group | homologous IL_4V88_457 IL_95997.1 | |
| IL_5JUT_071 | 1/A/1389:1391, 1/A/1407:1412 | No text annotation Not in a motif group | ||
| IL_5JUT_072 | 1/A/1480:1487, 1/A/1519:1527 | No text annotation Not in a motif group | homologous IL_8C3A_466 IL_10447.1 | |
| IL_5JUT_073 | 1/A/1488:1494, 1/A/1513:1518 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_5JUT_074 | 1/A/1495:1498, 1/A/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_5JUT_075 | 1/A/1540:1545, 1/A/1566:1571 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.2 | |
| IL_5JUT_076 | 1/A/1636:1638, 1/A/1764:1767 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_5JUT_077 | 1/A/1638:1641, 1/A/1760:1764 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5JUT_078 | 1/A/1642:1644, 1/A/1757:1759 | No text annotation Not in a motif group | homologous IL_4V88_465 IL_95997.1 | |
| IL_5JUT_079 | 1/A/1644:1647, 1/A/1753:1757 | No text annotation Not in a motif group | ||
| IL_5JUT_080 | 1/A/1650:1652, 1/A/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_5JUT_081 | 1/A/1653:1656, 1/A/1744:1747 | Double sheared Not in a motif group | homologous IL_4V88_468 IL_09705.9 | |
| IL_5JUT_082 | 1/A/1656:1658, 1/A/1743:1744 | No text annotation Not in a motif group | ||
| IL_5JUT_083 | 1/A/1665:1667, 1/A/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_5JUT_084 | 1/A/1669:1672, 1/A/1729:1732 | Double sheared Not in a motif group | geometric IL_1SAQ_002 IL_09705.9 | |
| IL_5JUT_085 | 1/A/1672:1674, 1/A/1727:1729 | No text annotation Not in a motif group | homologous IL_4V88_472 IL_95997.1 | |
| IL_5JUT_086 | 1/A/1675:1678, 1/A/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_5JUT_087 | 1/A/1678:1682, 1/A/1719:1723 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_5JUT_088 | 1/B/5:8, 1/C/150:154 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1JID_002 IL_30621.2 | |
| IL_5JUT_089 | 1/B/10:19, 1/C/140:148 | No text annotation Not in a motif group | ||
| IL_5JUT_090 | 1/B/27:28, 1/B/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_5JUT_091 | 1/B/31:38, 1/B/45:53 | No text annotation Not in a motif group | homologous IL_8C3A_005 IL_35728.2 | |
| IL_5JUT_092 | 1/B/82:89, 1/B/97:103 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_5JUT_093 | 1/B/123:124, 1/B/144:149 | No text annotation Not in a motif group | homologous IL_8C3A_007 IL_19724.2 | |
| IL_5JUT_094 | 1/B/125:127, 1/B/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_5JUT_095 | 1/B/163:165, 1/B/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_5JUT_096 | 1/B/168:170, 1/B/248:254 | No text annotation Not in a motif group | ||
| IL_5JUT_097 | 1/B/177:179, 1/B/237:241 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_011 IL_63450.2 | |
| IL_5JUT_098 | 1/B/189:191, 1/B/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_5JUT_099 | 1/B/337:339, 1/C/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_5JUT_100 | 1/B/376:379, 1/B/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_5JUT_101 | 1/B/404:411, 1/C/12:19 | No text annotation Not in a motif group | ||
| IL_5JUT_102 | 1/B/429:431, 1/B/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_5JUT_103 | 1/B/443:450, 1/B/486:491 | No text annotation Not in a motif group | ||
| IL_5JUT_104 | 1/B/512:513, 1/B/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.2 | |
| IL_5JUT_105 | 1/B/517:525, 1/B/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_5JUT_106 | 1/B/531:538, 1/B/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_5JUT_107 | 1/B/668:670, 1/B/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_5JUT_108 | 1/B/680:684, 1/B/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_5JUT_109 | 1/B/725:729, 1/B/740:745 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_5JUT_110 | 1/B/752:753, 1/B/779:781 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_5JUT_111 | 1/B/755:756, 1/B/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_5JUT_112 | 1/B/758:763, 1/B/768:773 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_5JUT_113 | 1/B/803:805, 1/B/938:940 | No text annotation Not in a motif group | homologous IL_8C3A_029 IL_95997.1 | |
| IL_5JUT_114 | 1/B/805:809, 1/B/931:938 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
| IL_5JUT_115 | 1/B/833:834, 1/B/859:861 | Single bulged G Not in a motif group | geometric IL_7A0S_017 IL_00225.2 | |
| IL_5JUT_116 | 1/B/834:838, 1/B/855:859 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.8 | |
| IL_5JUT_117 | 1/B/869:872, 1/B/888:890 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_5JUT_118 | 1/B/873:875, 1/B/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_5JUT_119 | 1/B/907:909, 1/B/919:923 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.6 | |
| IL_5JUT_120 | 1/B/954:956, 1/B/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_5JUT_121 | 1/B/969:970, 1/B/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_5JUT_122 | 1/B/977:982, 1/B/1101:1104 | No text annotation Not in a motif group | ||
| IL_5JUT_123 | 1/B/990:997, 1/B/1052:1059 | No text annotation Not in a motif group | ||
| IL_5JUT_124 | 1/B/997:998, 1/B/1050:1052 | No text annotation Not in a motif group | homologous IL_8C3A_042 IL_42622.2 | |
| IL_5JUT_125 | 1/B/999:1004, 1/B/1046:1049 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_02509.1 | |
| IL_5JUT_126 | 1/B/1006:1009, 1/B/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_041 IL_30621.2 | |
| IL_5JUT_127 | 1/B/1009:1011, 1/B/1039:1041 | No text annotation Not in a motif group | geometric IL_4M4O_002 IL_95997.1 | |
| IL_5JUT_128 | 1/B/1014:1018, 1/B/1034:1036 | No text annotation Not in a motif group | ||
| IL_5JUT_129 | 1/B/1069:1071, 1/B/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_95997.1 | |
| IL_5JUT_130 | 1/B/1074:1076, 1/B/1083:1084 | No text annotation Not in a motif group | homologous IL_8C3A_048 IL_00225.2 | |
| IL_5JUT_131 | 1/B/1120:1122, 1/B/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_5JUT_132 | 1/B/1167:1171, 1/B/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_5JUT_133 | 1/B/1173:1180, 1/B/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.7 | |
| IL_5JUT_134 | 1/B/1180:1182, 1/B/1324:1325 | Single bulged U Not in a motif group | geometric IL_7A0S_035 IL_83039.13 | |
| IL_5JUT_135 | 1/B/1187:1194, 1/B/1314:1319 | No text annotation Not in a motif group | homologous IL_5TBW_051 IL_27086.1 | |
| IL_5JUT_136 | 1/B/1194:1205, 1/B/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_5JUT_137 | 1/B/1207:1209, 1/B/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_5JUT_138 | 1/B/1218:1226, 1/B/1283:1287 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.4 | |
| IL_5JUT_139 | 1/B/1234:1238, 1/B/1250:1254 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_5JUT_140 | 1/B/1262:1266, 1/B/1275:1277 | No text annotation Not in a motif group | homologous IL_8C3A_059 IL_05564.2 | |
| IL_5JUT_141 | 1/B/1376:1378, 1/B/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_5JUT_142 | 1/B/1385:1387, 1/B/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_5JUT_143 | 1/B/1388:1395, 1/B/1415:1419 | No text annotation Not in a motif group | ||
| IL_5JUT_144 | 1/B/1398:1400, 1/B/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_5JUT_145 | 1/B/1500:1505, 1/B/1513:1516 | No text annotation Not in a motif group | homologous IL_5TBW_062 IL_93630.2 | |
| IL_5JUT_146 | 1/B/1532:1536, 1/B/1585:1590 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_5JUT_147 | 1/B/1595:1597, 1/B/1611:1612 | No text annotation Not in a motif group | ||
| IL_5JUT_148 | 1/B/1597:1598, 1/B/1609:1611 | No text annotation Not in a motif group | ||
| IL_5JUT_149 | 1/B/1618:1620, 1/B/1825:1826 | Single stack bend Not in a motif group | geometric IL_7RQB_005 IL_76488.2 | |
| IL_5JUT_150 | 1/B/1623:1625, 1/B/1818:1822 | No text annotation Not in a motif group | homologous IL_8C3A_071 IL_82068.2 | |
| IL_5JUT_151 | 1/B/1627:1631, 1/B/1811:1816 | No text annotation Not in a motif group | homologous IL_8C3A_072 IL_48431.1 | |
| IL_5JUT_152 | 1/B/1645:1649, 1/B/1806:1810 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.8 | |
| IL_5JUT_153 | 1/B/1661:1663, 1/B/1786:1788 | No text annotation Not in a motif group | homologous IL_8C3A_074 IL_95997.1 | |
| IL_5JUT_154 | 1/B/1669:1670, 1/B/1778:1780 | Single bulged C Not in a motif group | geometric IL_5TBW_069 IL_61258.12 | |
| IL_5JUT_155 | 1/B/1670:1671, 1/B/1776:1778 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_76488.2 | |
| IL_5JUT_156 | 1/B/1694:1698, 1/B/1747:1752 | No text annotation Not in a motif group | homologous IL_8C3A_077 IL_69313.1 | |
| IL_5JUT_157 | 1/B/1702:1707, 1/B/1737:1743 | No text annotation Not in a motif group | homologous IL_5TBW_072 IL_39753.1 | |
| IL_5JUT_158 | 1/B/1711:1718, 1/B/1726:1733 | No text annotation Not in a motif group | ||
| IL_5JUT_159 | 1/B/1883:1889, 1/B/2346:2349 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
| IL_5JUT_160 | 1/B/1918:1923, 1/B/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5TBW_078 IL_65969.2 | |
| IL_5JUT_161 | 1/B/1940:1942, 1/B/2106:2108 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_5JUT_162 | 1/B/1947:1948, 1/B/2098:2101 | No text annotation Not in a motif group | ||
| IL_5JUT_163 | 1/B/2128:2129, 1/B/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_5JUT_164 | 1/B/2156:2161, 1/B/2173:2180 | No text annotation Not in a motif group | homologous IL_8C3A_088 IL_64509.1 | |
| IL_5JUT_165 | 1/B/2196:2199, 1/B/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.1 | |
| IL_5JUT_166 | 1/B/2200:2201, 1/B/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_5JUT_167 | 1/B/2204:2210, 1/B/2235:2238 | No text annotation Not in a motif group | ||
| IL_5JUT_168 | 1/B/2211:2217, 1/B/2228:2234 | No text annotation Not in a motif group | homologous IL_8C3A_093 IL_36973.6 | |
| IL_5JUT_169 | 1/B/2276:2277, 1/B/2307:2310 | No text annotation Not in a motif group | geometric IL_4V9F_070 IL_59677.2 | |
| IL_5JUT_170 | 1/B/2277:2288, 1/B/2304:2307 | No text annotation Not in a motif group | homologous IL_5TBW_090 IL_81589.2 | |
| IL_5JUT_171 | 1/B/2391:2394, 1/B/2986:2988 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_5JUT_172 | 1/B/2396:2398, 1/B/2981:2984 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_5JUT_173 | 1/B/2409:2411, 1/B/2811:2812 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.13 | |
| IL_5JUT_174 | 1/B/2412:2413, 1/B/2807:2810 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_5JUT_175 | 1/B/2423:2425, 1/B/2604:2607 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_5JUT_176 | 1/B/2520:2526, 1/B/2584:2587 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_5JUT_177 | 1/B/2614:2615, 1/B/2625:2627 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.2 | |
| IL_5JUT_178 | 1/B/2666:2668, 1/B/2686:2690 | No text annotation Not in a motif group | homologous IL_8C3A_108 IL_38958.7 | |
| IL_5JUT_179 | 1/B/2718:2721, 1/B/2735:2738 | No text annotation Not in a motif group | homologous IL_8C3A_109 IL_30621.2 | |
| IL_5JUT_180 | 1/B/2770:2773, 1/B/2787:2788 | No text annotation Not in a motif group | homologous IL_8C3A_110 IL_76488.2 | |
| IL_5JUT_181 | 1/B/2823:2824, 1/B/2865:2867 | Major groove platform Not in a motif group | homologous IL_5TBW_102 IL_27635.1 | |
| IL_5JUT_182 | 1/B/2824:2826, 1/B/2863:2865 | No text annotation Not in a motif group | geometric IL_7A0S_026 IL_51629.2 | |
| IL_5JUT_183 | 1/B/2826:2828, 1/B/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_5JUT_184 | 1/B/2828:2830, 1/B/2858:2862 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_92788.2 | |
| IL_5JUT_185 | 1/B/2835:2839, 1/B/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_5JUT_186 | 1/B/2876:2877, 1/B/2949:2951 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_5JUT_187 | 1/B/2879:2881, 1/B/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_5JUT_188 | 1/B/2881:2882, 1/B/2940:2943 | No text annotation Not in a motif group | homologous IL_8C3A_117 IL_71530.2 | |
| IL_5JUT_189 | 1/B/2889:2891, 1/B/2912:2914 | No text annotation Not in a motif group | homologous IL_8C3A_118 IL_51629.2 | |
| IL_5JUT_190 | 1/B/2891:2892, 1/B/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.3 | |
| IL_5JUT_191 | 1/B/2918:2920, 1/B/2926:2928 | No text annotation Not in a motif group | geometric IL_4M4O_001 IL_95997.1 | |
| IL_5JUT_192 | 1/B/2960:2961, 1/B/2970:2972 | Single bulged A Not in a motif group | homologous IL_5TBW_113 IL_37497.2 | |
| IL_5JUT_193 | 1/B/3004:3007, 1/B/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_5JUT_194 | 1/B/3012:3014, 1/B/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_5JUT_195 | 1/B/3018:3025, 1/B/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_5JUT_196 | 1/B/3047:3051, 1/B/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_5JUT_197 | 1/B/3054:3059, 1/B/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_5JUT_198 | 1/B/3063:3064, 1/B/3077:3080 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_5JUT_199 | 1/B/3102:3107, 1/B/3127:3132 | UAA/GAN with extra cWW Not in a motif group | geometric IL_5J7L_350 IL_49767.5 | |
| IL_5JUT_200 | 1/B/3161:3166, 1/B/3284:3289 | No text annotation Not in a motif group | ||
| IL_5JUT_201 | 1/B/3168:3170, 1/B/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_95997.1 | |
| IL_5JUT_202 | 1/B/3177:3179, 1/B/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_5JUT_203 | 1/B/3179:3188, 1/B/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_5JUT_204 | 1/B/3193:3194, 1/B/3197:3199 | Single bulged U Not in a motif group | homologous IL_5TBW_125 IL_83039.13 | |
| IL_5JUT_205 | 1/B/3225:3229, 1/B/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_5JUT_206 | 1/B/3233:3235, 1/B/3252:3254 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_5JUT_207 | 1/B/3235:3238, 1/B/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_128 IL_30621.2 | |
| IL_5JUT_208 | 1/B/3300:3303, 1/B/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_129 IL_30621.2 | |
| IL_5JUT_209 | 1/B/3318:3320, 1/B/3387:3388 | No text annotation Not in a motif group | homologous IL_8C3A_136 IL_83039.13 | |
| IL_5JUT_210 | 1/B/3324:3325, 1/B/3381:3383 | No text annotation Not in a motif group | homologous IL_8C3A_137 IL_83039.13 | |
| IL_5JUT_211 | 1/B/3328:3330, 1/B/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_5JUT_212 | 1/B/3332:3337, 1/B/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.5 | |
| IL_5JUT_213 | 1/B/3340:3342, 1/B/3363:3364 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.13 | |
| IL_5JUT_214 | 1/B/3342:3345, 1/B/3360:3363 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_5JUT_215 | 1/B/3349:3350, 1/B/3353:3356 | No text annotation Not in a motif group | ||
| IL_5JUT_216 | 1/C/43:64, 1/C/96:101 | No text annotation Not in a motif group | ||
| IL_5JUT_217 | 1/C/64:66, 1/C/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3KTW_002 IL_82068.2 | |
| IL_5JUT_218 | 1/D/15:16, 1/D/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_5JUT_219 | 1/D/21:27, 1/D/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_5JUT_220 | 1/D/28:29, 1/D/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_63797.2 | |
| IL_5JUT_221 | 1/D/29:30, 1/D/47:49 | Single stack bend Not in a motif group | homologous IL_5TBW_375 IL_76488.2 | |
| IL_5JUT_222 | 1/D/32:36, 1/D/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.6 | |
| IL_5JUT_223 | 1/D/72:80, 1/D/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_5JUT_224 | 1/D/84:87, 1/D/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_5JUT_225 | 1/EC/6899:6900, 1/EC/6913:6915 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5JUT_001 | 1/A/41:42, 1/A/433:439, 1/A/464:466 | No text annotation Not in a motif group | ||
| J3_5JUT_002 | 1/A/633:635, 1/A/861:865, 1/A/965:966 | No text annotation Not in a motif group | ||
| J3_5JUT_003 | 1/A/881:884, 1/A/928:936, 1/A/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_5JUT_004 | 1/A/1037:1039, 1/A/1079:1083, 1/A/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_5JUT_005 | 1/A/1161:1164, 1/A/1581:1587, 1/A/1609:1616 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_5JUT_006 | 1/A/1168:1171, 1/A/1468:1470, 1/A/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_5JUT_007 | 1/A/1180:1188, 1/A/1197:1209, 1/A/1454:1458 | No text annotation Not in a motif group | ||
| J3_5JUT_008 | 1/A/1215:1220, 1/A/1263:1267, 1/A/1442:1448 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_5JUT_009 | 1/A/1283:1288, 1/A/1327:1332, 1/A/1419:1424 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_5JUT_010 | 1/A/1293:1294, 1/A/1303:1306, 1/A/1318:1322 | No text annotation Not in a motif group | ||
| J3_5JUT_011 | 1/A/1336:1338, 1/A/1386:1389, 1/A/1412:1415 | No text annotation Not in a motif group | homologous J3_4V88_040 NA | |
| J3_5JUT_012 | 1/A/1470:1474, 1/A/1533:1540, 1/A/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA | |
| J3_5JUT_013 | 1/B/113:123, 1/B/149:158, 1/B/263:267 | No text annotation Not in a motif group | ||
| J3_5JUT_014 | 1/B/502:503, 1/B/588:597, 1/B/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_5JUT_015 | 1/B/813:820, 1/B/905:907, 1/B/923:927 | No text annotation Not in a motif group | ||
| J3_5JUT_016 | 1/B/828:831, 1/B/863:867, 1/B/892:897 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_5JUT_017 | 1/B/983:987, 1/B/1062:1066, 1/B/1092:1100 | No text annotation Not in a motif group | ||
| J3_5JUT_018 | 1/B/1230:1232, 1/B/1256:1262, 1/B/1277:1279 | No text annotation Not in a motif group | homologous J3_5TBW_007 NA | |
| J3_5JUT_019 | 1/B/1479:1485, 1/B/1857:1859, 1/B/1871:1874 | No text annotation Not in a motif group | homologous J3_8C3A_006 NA | |
| J3_5JUT_020 | 1/B/1526:1531, 1/B/1591:1595, 1/B/1612:1613 | No text annotation Not in a motif group | ||
| J3_5JUT_021 | 1/B/1631:1632, 1/B/1641:1645, 1/B/1810:1811 | No text annotation Not in a motif group | ||
| J3_5JUT_022 | 1/B/1895:1906, 1/B/2333:2335, 1/B/2339:2340 | No text annotation Not in a motif group | ||
| J3_5JUT_023 | 1/B/2432:2435, 1/B/2512:2517, 1/B/2590:2597 | No text annotation Not in a motif group | homologous J3_8C3A_008 NA | |
| J3_5JUT_024 | 1/B/2664:2666, 1/B/2690:2692, 1/B/2701:2706 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_5JUT_025 | 1/B/2886:2889, 1/B/2914:2916, 1/B/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_5JUT_026 | 1/B/3298:3300, 1/B/3314:3318, 1/B/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_5JUT_027 | 1/D/9:14, 1/D/66:67, 1/D/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_5JUT_028 | 1/EC/6895:6897, 1/EC/6917:6920, 1/EC/6933:6935 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: