5ND9 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5ND9_001 | 1/A/59:68 | No text annotation Not in a motif group | homologous HL_7A0S_001 HL_99167.1 | |
| HL_5ND9_002 | 1/A/87:95 | No text annotation Not in a motif group | homologous HL_4WF9_002 HL_96598.1 | |
| HL_5ND9_003 | 1/A/122:127 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_5ND9_004 | 1/A/136:143 | No text annotation Not in a motif group | homologous HL_4WF9_004 HL_84085.2 | |
| HL_5ND9_005 | 1/A/159:169 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_5ND9_006 | 1/A/197:204 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.2 | |
| HL_5ND9_007 | 1/A/228:233 | No text annotation Not in a motif group | homologous HL_4WF9_007 HL_02862.2 | |
| HL_5ND9_008 | 1/A/249:255 | No text annotation Not in a motif group | homologous HL_4WF9_008 HL_67216.7 | |
| HL_5ND9_009 | 1/A/283:288 | No text annotation Not in a motif group | ||
| HL_5ND9_010 | 1/A/348:355 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_5ND9_011 | 1/A/362:366 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_5ND9_012 | 1/A/370:378 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_5ND9_013 | 1/A/427:439 | No text annotation Not in a motif group | ||
| HL_5ND9_014 | 1/A/456:463 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
| HL_5ND9_015 | 1/A/508:513 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_5ND9_016 | 1/A/533:538 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_5ND9_017 | 1/A/587:594 | No text annotation Not in a motif group | homologous HL_4WF9_017 HL_50318.1 | |
| HL_5ND9_018 | 1/A/609:618 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_018 HL_89380.2 | |
| HL_5ND9_019 | 1/A/655:661 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_5ND9_020 | 1/A/674:679 | GNRA Not in a motif group | homologous HL_4WF9_020 HL_42097.1 | |
| HL_5ND9_021 | 1/A/685:693 | No text annotation Not in a motif group | geometric HL_4V9F_032 HL_49288.1 | |
| HL_5ND9_022 | 1/A/757:764 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_5ND9_023 | 1/A/789:798 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_5ND9_024 | 1/A/824:830 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.1 | |
| HL_5ND9_025 | 1/A/871:876 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_5ND9_027 | 1/A/999:1006 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_5ND9_028 | 1/A/1022:1029 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_5ND9_029 | 1/A/1108:1118 | No text annotation Not in a motif group | ||
| HL_5ND9_030 | 1/A/1214:1218 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_5ND9_031 | 1/A/1260:1265 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
| HL_5ND9_032 | 1/A/1318:1326 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_5ND9_033 | 1/A/1361:1367 | No text annotation Not in a motif group | homologous HL_7A0S_033 HL_46680.1 | |
| HL_5ND9_034 | 1/A/1400:1405 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_5ND9_035 | 1/A/1426:1435 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_5ND9_036 | 1/A/1535:1541 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_5ND9_037 | 1/A/1612:1615 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_5ND9_038 | 1/A/1656:1663 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_5ND9_039 | 1/A/1673:1681 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_5ND9_040 | 1/A/1735:1740 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
| HL_5ND9_041 | 1/A/1761:1768 | No text annotation Not in a motif group | homologous HL_4WF9_041 HL_49288.1 | |
| HL_5ND9_042 | 1/A/1779:1783 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_5ND9_043 | 1/A/1804:1814 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_5ND9_044 | 1/A/1833:1838 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_5ND9_045 | 1/A/1895:1900 | No text annotation Not in a motif group | ||
| HL_5ND9_047 | 1/A/1976:1984 | No text annotation Not in a motif group | homologous HL_4WF9_046 HL_51824.1 | |
| HL_5ND9_048 | 1/A/2054:2063 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_5ND9_049 | 1/A/2170:2175 | UNCG Not in a motif group | homologous HL_3U4M_001 HL_03562.2 | |
| HL_5ND9_050 | 1/A/2236:2242 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_5ND9_051 | 1/A/2275:2283 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_5ND9_052 | 1/A/2291:2303 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_5ND9_053 | 1/A/2330:2340 | No text annotation Not in a motif group | ||
| HL_5ND9_054 | 1/A/2351:2358 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_5ND9_055 | 1/A/2382:2389 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_5ND9_056 | 1/A/2401:2406 | No text annotation Not in a motif group | homologous HL_7A0S_057 HL_42097.1 | |
| HL_5ND9_057 | 1/A/2431:2440 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_5ND9_058 | 1/A/2498:2506 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_5ND9_059 | 1/A/2555:2562 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_5ND9_060 | 1/A/2578:2584 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_5ND9_061 | 1/A/2621:2626 | No text annotation Not in a motif group | homologous HL_7A0S_062 HL_42097.1 | |
| HL_5ND9_062 | 1/A/2685:2690 | GNRA Not in a motif group | homologous HL_4WF9_060 HL_42097.1 | |
| HL_5ND9_063 | 1/A/2728:2733 | Ribsomal LSU H95 Not in a motif group | homologous HL_4WF9_061 HL_46680.1 | |
| HL_5ND9_064 | 1/A/2772:2786 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_5ND9_065 | 1/A/2819:2824 | No text annotation Not in a motif group | ||
| HL_5ND9_066 | 1/A/2839:2847 | No text annotation Not in a motif group | homologous HL_4WF9_064 HL_27930.1 | |
| HL_5ND9_067 | 1/A/2876:2881 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_5ND9_068 | 1/B/36:42 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_87939.1 | |
| HL_5ND9_069 | 1/B/79:92 | No text annotation Not in a motif group | ||
| HL_5ND9_070 | 1/a/13:23 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5ND9_071 | 1/a/83:86 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_53837.1 | |
| HL_5ND9_072 | 1/a/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_5ND9_073 | 1/a/193:198 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_5ND9_074 | 1/a/217:223 | No text annotation Not in a motif group | ||
| HL_5ND9_075 | 1/a/267:275 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_5ND9_076 | 1/a/304:309 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_5ND9_077 | 1/a/328:341 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_5ND9_078 | 1/a/350:355 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_5ND9_079 | 1/a/387:392 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_5ND9_080 | 1/a/427:432 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_5ND9_081 | 1/a/471:479 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
| HL_5ND9_082 | 1/a/530:535 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_5ND9_083 | 1/a/625:631 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_5ND9_084 | 1/a/697:706 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_5ND9_085 | 1/a/734:739 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_5ND9_086 | 1/a/794:804 | No text annotation Not in a motif group | ||
| HL_5ND9_087 | 1/a/848:856 | No text annotation Not in a motif group | geometric HL_2ZZN_004 HL_09136.1 | |
| HL_5ND9_088 | 1/a/872:877 | GNRA Not in a motif group | homologous HL_6CZR_090 HL_87030.2 | |
| HL_5ND9_089 | 1/a/907:912 | GNRA Not in a motif group | homologous HL_6CZR_091 HL_42097.1 | |
| HL_5ND9_090 | 1/a/973:982 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5ND9_091 | 1/a/1022:1027 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_5ND9_092 | 1/a/1038:1045 | No text annotation Not in a motif group | ||
| HL_5ND9_093 | 1/a/1088:1093 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_5ND9_094 | 1/a/1101:1108 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
| HL_5ND9_095 | 1/a/1145:1152 | No text annotation Not in a motif group | geometric HL_5TBW_024 HL_71554.2 | |
| HL_5ND9_096 | 1/a/1176:1182 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.2 | |
| HL_5ND9_097 | 1/a/1276:1281 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_5ND9_098 | 1/a/1325:1334 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_5ND9_099 | 1/a/1367:1377 | No text annotation Not in a motif group | homologous HL_5J7L_029 HL_96366.1 | |
| HL_5ND9_100 | 1/a/1461:1465 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_5ND9_101 | 1/a/1527:1532 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5ND9_026 | No text annotation | ||
| HL_5ND9_046 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5ND9_001 | 1/A/24:30, 1/A/555:561 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7A0S_001 IL_66414.6 | |
| IL_5ND9_002 | 1/A/36:37, 1/A/488:490 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_5ND9_003 | 1/A/43:44, 1/A/480:482 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_5ND9_004 | 1/A/81:85, 1/A/97:104 | Kink-turn Not in a motif group | homologous IL_4WF9_004 IL_45067.2 | |
| IL_5ND9_005 | 1/A/152:156, 1/A/172:177 | No text annotation Not in a motif group | ||
| IL_5ND9_006 | 1/A/186:187, 1/A/215:217 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_76488.2 | |
| IL_5ND9_007 | 1/A/190:197, 1/A/204:212 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_008 IL_35728.2 | |
| IL_5ND9_008 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_009 IL_04346.7 | |
| IL_5ND9_009 | 1/A/305:306, 1/A/409:412 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_7RQB_113 IL_09061.6 | |
| IL_5ND9_010 | 1/A/336:338, 1/A/386:390 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_5ND9_011 | 1/A/527:530, 1/A/541:554 | No text annotation Not in a motif group | geometric IL_4WF9_015 IL_60992.6 | |
| IL_5ND9_012 | 1/A/581:584, 1/A/597:600 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_5ND9_013 | 1/A/607:609, 1/A/618:620 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_5ND9_014 | 1/A/638:640, 1/A/705:707 | No text annotation Not in a motif group | homologous IL_4WF9_018 IL_51629.2 | |
| IL_5ND9_015 | 1/A/649:653, 1/A/663:667 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_5ND9_016 | 1/A/717:719, 1/A/851:853 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_5ND9_017 | 1/A/719:723, 1/A/844:851 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.6 | |
| IL_5ND9_018 | 1/A/742:743, 1/A/808:810 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.2 | |
| IL_5ND9_019 | 1/A/747:752, 1/A/769:775 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_5ND9_020 | 1/A/783:785, 1/A/802:803 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.1 | |
| IL_5ND9_021 | 1/A/820:822, 1/A/832:836 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_5ND9_022 | 1/A/882:883, 1/A/984:986 | Single stack bend Not in a motif group | homologous IL_7A0S_022 IL_92001.1 | |
| IL_5ND9_023 | 1/A/889:893, 1/A/975:978 | No text annotation Not in a motif group | homologous IL_4WF9_029 IL_06300.1 | |
| IL_5ND9_024 | 1/A/897:898, 1/A/969:971 | Single bulged U Not in a motif group | geometric IL_6MWN_006 IL_83039.13 | |
| IL_5ND9_025 | 1/A/901:907, 1/A/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_4WF9_031 IL_93830.3 | |
| IL_5ND9_026 | 1/A/907:908, 1/A/958:960 | Minor groove platform Not in a motif group | geometric IL_4WF9_032 IL_42622.2 | |
| IL_5ND9_027 | 1/A/909:913, 1/A/954:957 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5ND9_028 | 1/A/920:924, 1/A/943:947 | No text annotation Not in a motif group | ||
| IL_5ND9_029 | 1/A/1038:1040, 1/A/1203:1204 | Single bulged C Not in a motif group | homologous IL_4WF9_035 IL_61258.12 | |
| IL_5ND9_030 | 1/A/1042:1046, 1/A/1197:1201 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
| IL_5ND9_031 | 1/A/1048:1055, 1/A/1194:1195 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4WF9_037 IL_15861.7 | |
| IL_5ND9_032 | 1/A/1055:1057, 1/A/1193:1194 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.13 | |
| IL_5ND9_033 | 1/A/1062:1068, 1/A/1184:1188 | No text annotation Not in a motif group | homologous IL_5J7L_280 IL_57188.3 | |
| IL_5ND9_034 | 1/A/1068:1074, 1/A/1168:1184 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_5ND9_035 | 1/A/1075:1078, 1/A/1165:1167 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_5ND9_036 | 1/A/1081:1083, 1/A/1160:1162 | No text annotation Not in a motif group | homologous IL_4WF9_042 IL_95997.1 | |
| IL_5ND9_037 | 1/A/1087:1095, 1/A/1152:1156 | Kink-turn Not in a motif group | homologous IL_7RQB_042 IL_90538.4 | |
| IL_5ND9_038 | 1/A/1098:1101, 1/A/1125:1149 | No text annotation Not in a motif group | ||
| IL_5ND9_039 | 1/A/1103:1107, 1/A/1119:1123 | No text annotation Not in a motif group | ||
| IL_5ND9_040 | 1/A/1243:1245, 1/A/1277:1279 | Isolated cWH basepair Not in a motif group | homologous IL_4WF9_045 IL_51629.2 | |
| IL_5ND9_041 | 1/A/1246:1253, 1/A/1272:1276 | Kink-turn Not in a motif group | homologous IL_7A0S_043 IL_70923.2 | |
| IL_5ND9_042 | 1/A/1257:1259, 1/A/1266:1268 | Intercalated cWW Not in a motif group | homologous IL_4WF9_047 IL_82842.2 | |
| IL_5ND9_043 | 1/A/1300:1308, 1/A/2037:2044 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_35728.2 | |
| IL_5ND9_044 | 1/A/1347:1350, 1/A/1647:1648 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.2 | |
| IL_5ND9_045 | 1/A/1356:1360, 1/A/1368:1370 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_4WF9_050 IL_37712.2 | |
| IL_5ND9_046 | 1/A/1388:1392, 1/A/1413:1417 | UAA/GAN Not in a motif group | homologous IL_4WF9_051 IL_89002.2 | |
| IL_5ND9_047 | 1/A/1394:1398, 1/A/1407:1411 | tSH-tHW-tHS Not in a motif group | homologous IL_4WF9_052 IL_17136.1 | |
| IL_5ND9_048 | 1/A/1446:1460, 1/A/1628:1637 | No text annotation Not in a motif group | ||
| IL_5ND9_049 | 1/A/1461:1465, 1/A/1624:1627 | Other IL Not in a motif group | homologous IL_4WF9_054 IL_04059.1 | |
| IL_5ND9_050 | 1/A/1476:1480, 1/A/1604:1608 | No text annotation Not in a motif group | ||
| IL_5ND9_051 | 1/A/1511:1515, 1/A/1565:1570 | No text annotation Not in a motif group | geometric IL_3BNN_006 IL_25186.1 | |
| IL_5ND9_052 | 1/A/1518:1522, 1/A/1558:1562 | No text annotation Not in a motif group | ||
| IL_5ND9_053 | 1/A/1524:1526, 1/A/1549:1556 | No text annotation Not in a motif group | ||
| IL_5ND9_054 | 1/A/1530:1534, 1/A/1542:1545 | No text annotation Not in a motif group | ||
| IL_5ND9_055 | 1/A/1695:1700, 1/A/2031:2033 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.2 | |
| IL_5ND9_056 | 1/A/1707:1709, 1/A/2022:2024 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
| IL_5ND9_057 | 1/A/1710:1713, 1/A/2020:2021 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_306 IL_50694.2 | |
| IL_5ND9_058 | 1/A/1713:1718, 1/A/2017:2020 | Intercalated tWH Not in a motif group | homologous IL_4WF9_065 IL_82842.2 | |
| IL_5ND9_059 | 1/A/1730:1735, 1/A/1740:1746 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5TBW_078 IL_65969.2 | |
| IL_5ND9_060 | 1/A/1757:1759, 1/A/1770:1772 | Isolated cWH basepair Not in a motif group | geometric IL_6F4H_001 IL_51629.2 | |
| IL_5ND9_061 | 1/A/1797:1798, 1/A/2007:2009 | Single bulged A Not in a motif group | homologous IL_7A0S_064 IL_37497.2 | |
| IL_5ND9_062 | 1/A/1825:1831, 1/A/1840:1848 | Kink-turn related Not in a motif group | homologous IL_7A0S_065 IL_17069.3 | |
| IL_5ND9_063 | 1/A/1864:1867, 1/A/1929:1930 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_5ND9_064 | 1/A/1868:1869, 1/A/1925:1928 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4WF9_071 IL_69996.1 | |
| IL_5ND9_065 | 1/A/1873:1876, 1/A/1920:1921 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_5ND9_066 | 1/A/1878:1882, 1/A/1914:1918 | UAA/GAN with extra pair Not in a motif group | homologous IL_4WF9_073 IL_90318.1 | |
| IL_5ND9_067 | 1/A/1883:1887, 1/A/1909:1913 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_5ND9_068 | 1/A/1891:1894, 1/A/1901:1905 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_5ND9_069 | 1/A/1960:1961, 1/A/1991:1994 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_5ND9_070 | 1/A/1961:1972, 1/A/1988:1991 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_5ND9_071 | 1/A/2077:2079, 1/A/2644:2645 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_5ND9_072 | 1/A/2081:2083, 1/A/2639:2642 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_092 IL_54678.5 | |
| IL_5ND9_073 | 1/A/2094:2096, 1/A/2469:2470 | Single bulged U Not in a motif group | geometric IL_7RQB_080 IL_83039.13 | |
| IL_5ND9_074 | 1/A/2096:2099, 1/A/2464:2469 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_5ND9_075 | 1/A/2108:2110, 1/A/2263:2266 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_082 IL_38958.7 | |
| IL_5ND9_076 | 1/A/2123:2125, 1/A/2218:2220 | No text annotation Not in a motif group | geometric IL_3TD0_001 IL_95997.1 | |
| IL_5ND9_077 | 1/A/2135:2137, 1/A/2206:2208 | No text annotation Not in a motif group | homologous IL_3U4M_001 IL_95997.1 | |
| IL_5ND9_078 | 1/A/2137:2147, 1/A/2205:2206 | No text annotation Not in a motif group | ||
| IL_5ND9_079 | 1/A/2151:2154, 1/A/2188:2201 | No text annotation Not in a motif group | ||
| IL_5ND9_080 | 1/A/2156:2163, 1/A/2182:2186 | Kink-turn Not in a motif group | homologous IL_5J7L_330 IL_70923.2 | |
| IL_5ND9_081 | 1/A/2229:2231, 1/A/2247:2248 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_5ND9_082 | 1/A/2324:2326, 1/A/2344:2348 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 | |
| IL_5ND9_083 | 1/A/2377:2380, 1/A/2391:2394 | Double sheared Not in a motif group | homologous IL_7A0S_081 IL_09705.9 | |
| IL_5ND9_084 | 1/A/2428:2430, 1/A/2441:2442 | Single bulged U Not in a motif group | homologous IL_5J7L_334 IL_83039.13 | |
| IL_5ND9_085 | 1/A/2480:2481, 1/A/2525:2527 | Single stack bend Not in a motif group | geometric IL_7A0S_083 IL_76488.2 | |
| IL_5ND9_086 | 1/A/2481:2482, 1/A/2523:2525 | Major groove platform Not in a motif group | homologous IL_4WF9_090 IL_27635.1 | |
| IL_5ND9_087 | 1/A/2484:2486, 1/A/2520:2521 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_5ND9_088 | 1/A/2486:2488, 1/A/2516:2520 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_092 IL_92788.2 | |
| IL_5ND9_089 | 1/A/2493:2497, 1/A/2507:2511 | Triple sheared Not in a motif group | homologous IL_4WF9_093 IL_56467.8 | |
| IL_5ND9_090 | 1/A/2534:2535, 1/A/2607:2609 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_5ND9_091 | 1/A/2537:2539, 1/A/2601:2605 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
| IL_5ND9_092 | 1/A/2539:2540, 1/A/2598:2601 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 IL_71530.2 | |
| IL_5ND9_093 | 1/A/2549:2550, 1/A/2567:2570 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_5ND9_094 | 1/A/2618:2619, 1/A/2628:2630 | No text annotation Not in a motif group | ||
| IL_5ND9_095 | 1/A/2663:2667, 1/A/2801:2809 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_5ND9_096 | 1/A/2679:2685, 1/A/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_5J7L_346 IL_16458.1 | |
| IL_5ND9_097 | 1/A/2707:2711, 1/A/2752:2754 | C-loop Not in a motif group | homologous IL_4WF9_101 IL_63596.6 | |
| IL_5ND9_098 | 1/A/2714:2718, 1/A/2745:2749 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_5ND9_099 | 1/A/2722:2723, 1/A/2738:2741 | Multiple bulged bases Not in a motif group | homologous IL_4WF9_103 IL_71530.2 | |
| IL_5ND9_100 | 1/A/2764:2769, 1/A/2789:2794 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_5ND9_101 | 1/A/2858:2861, 1/A/2896:2900 | No text annotation Not in a motif group | ||
| IL_5ND9_102 | 1/A/2863:2865, 1/A/2891:2894 | No text annotation Not in a motif group | homologous IL_4WF9_107 IL_02284.5 | |
| IL_5ND9_103 | 1/A/2867:2872, 1/A/2885:2889 | No text annotation Not in a motif group | homologous IL_4WF9_108 IL_83162.5 | |
| IL_5ND9_104 | 1/B/2:5, 1/B/110:113 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4WF9_109 IL_30621.2 | |
| IL_5ND9_105 | 1/B/5:8, 1/B/107:110 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_391 IL_30621.2 | |
| IL_5ND9_106 | 1/B/15:16, 1/B/63:65 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.2 | |
| IL_5ND9_107 | 1/B/20:27, 1/B/53:59 | No text annotation Not in a motif group | homologous IL_4WF9_113 IL_19048.1 | |
| IL_5ND9_108 | 1/B/28:29, 1/B/49:52 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_5ND9_109 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform Not in a motif group | homologous IL_4V9F_104 IL_58103.6 | |
| IL_5ND9_110 | 1/B/77:79, 1/B/92:94 | No text annotation Not in a motif group | homologous IL_7A0S_107 IL_51629.2 | |
| IL_5ND9_111 | 1/a/31:33, 1/a/560:561 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_5ND9_112 | 1/a/45:46, 1/a/404:406 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_5ND9_113 | 1/a/48:53, 1/a/367:369 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_5ND9_114 | 1/a/55:57, 1/a/364:365 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_5ND9_115 | 1/a/64:67, 1/a/102:103 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_5ND9_116 | 1/a/68:71, 1/a/98:101 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.2 | |
| IL_5ND9_117 | 1/a/72:78, 1/a/91:97 | No text annotation Not in a motif group | ||
| IL_5ND9_118 | 1/a/128:131, 1/a/239:240 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_5ND9_119 | 1/a/132:136, 1/a/235:238 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
| IL_5ND9_120 | 1/a/147:153, 1/a/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_5ND9_121 | 1/a/154:156, 1/a/165:167 | No text annotation Not in a motif group | geometric IL_1ZX7_006 IL_95997.1 | |
| IL_5ND9_122 | 1/a/250:255, 1/a/285:292 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_5ND9_123 | 1/a/256:260, 1/a/282:284 | No text annotation Not in a motif group | ||
| IL_5ND9_124 | 1/a/300:301, 1/a/312:316 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5ND9_125 | 1/a/375:377, 1/a/400:401 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_5ND9_126 | 1/a/379:383, 1/a/397:398 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_5ND9_127 | 1/a/383:384, 1/a/395:397 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_5ND9_128 | 1/a/417:424, 1/a/435:441 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5ND9_129 | 1/a/468:471, 1/a/479:481 | No text annotation Not in a motif group | geometric IL_6ZDU_001 IL_23164.1 | |
| IL_5ND9_130 | 1/a/512:519, 1/a/548:549 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_5ND9_131 | 1/a/523:529, 1/a/536:544 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_5ND9_132 | 1/a/577:583, 1/a/890:891 | No text annotation Not in a motif group | homologous IL_6CZR_134 IL_69996.1 | |
| IL_5ND9_133 | 1/a/588:592, 1/a/765:769 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_5ND9_134 | 1/a/602:604, 1/a/652:653 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_5ND9_135 | 1/a/605:606, 1/a/648:651 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_5ND9_136 | 1/a/612:613, 1/a/640:642 | No text annotation Not in a motif group | ||
| IL_5ND9_137 | 1/a/613:620, 1/a/636:640 | No text annotation Not in a motif group | ||
| IL_5ND9_138 | 1/a/662:663, 1/a/759:762 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_5ND9_139 | 1/a/664:667, 1/a/754:758 | No text annotation Not in a motif group | ||
| IL_5ND9_140 | 1/a/670:674, 1/a/748:751 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_5ND9_141 | 1/a/681:686, 1/a/720:725 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.1 | |
| IL_5ND9_142 | 1/a/692:696, 1/a/707:714 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_5ND9_143 | 1/a/782:787, 1/a/811:813 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_5ND9_144 | 1/a/787:791, 1/a/807:811 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_5ND9_145 | 1/a/897:905, 1/a/914:920 | 9x7 Sarcin-Ricin with inserted C; G-bulge Not in a motif group | homologous IL_6CZR_146 IL_68633.1 | |
| IL_5ND9_146 | 1/a/931:934, 1/a/1403:1407 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_001 IL_30621.2 | |
| IL_5ND9_147 | 1/a/935:937, 1/a/1401:1402 | Single bulged G Not in a motif group | homologous IL_6CZR_148 IL_00225.2 | |
| IL_5ND9_148 | 1/a/943:945, 1/a/1391:1395 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_5ND9_149 | 1/a/963:964, 1/a/1237:1239 | Minor groove platform Not in a motif group | homologous IL_5J7L_042 IL_42622.2 | |
| IL_5ND9_150 | 1/a/1003:1007, 1/a/1056:1057 | Minor groove platform Not in a motif group | homologous IL_5J7L_043 IL_47078.1 | |
| IL_5ND9_151 | 1/a/1008:1009, 1/a/1053:1055 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
| IL_5ND9_152 | 1/a/1010:1011, 1/a/1050:1052 | Single stack bend Not in a motif group | homologous IL_4LFB_041 IL_76488.2 | |
| IL_5ND9_153 | 1/a/1060:1062, 1/a/1219:1220 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_5ND9_154 | 1/a/1064:1068, 1/a/1215:1217 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_5ND9_155 | 1/a/1069:1070, 1/a/1210:1214 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_5ND9_156 | 1/a/1072:1073, 1/a/1206:1208 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_5ND9_157 | 1/a/1073:1075, 1/a/1204:1206 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_95997.1 | |
| IL_5ND9_158 | 1/a/1136:1139, 1/a/1156:1160 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.6 | |
| IL_5ND9_159 | 1/a/1141:1144, 1/a/1153:1154 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_5ND9_160 | 1/a/1169:1172, 1/a/1186:1192 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
| IL_5ND9_161 | 1/a/1258:1264, 1/a/1295:1301 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_5ND9_162 | 1/a/1266:1269, 1/a/1288:1293 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_5ND9_163 | 1/a/1270:1274, 1/a/1283:1287 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_5ND9_164 | 1/a/1314:1319, 1/a/1340:1345 | No text annotation Not in a motif group | homologous IL_6CZR_164 NA | |
| IL_5ND9_165 | 1/a/1410:1412, 1/a/1513:1516 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_5ND9_166 | 1/a/1412:1415, 1/a/1509:1513 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5ND9_167 | 1/a/1416:1418, 1/a/1506:1508 | UU cWW Not in a motif group | geometric IL_3SZX_003 IL_95997.1 | |
| IL_5ND9_168 | 1/a/1418:1420, 1/a/1503:1506 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4RUM_001 IL_82068.2 | |
| IL_5ND9_169 | 1/a/1423:1425, 1/a/1498:1500 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_5ND9_170 | 1/a/1427:1430, 1/a/1493:1496 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_5ND9_171 | 1/a/1435:1438, 1/a/1485:1488 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5J7L_283 IL_30621.2 | |
| IL_5ND9_172 | 1/a/1441:1446, 1/a/1478:1482 | Triple sheared related Not in a motif group | geometric IL_5J7L_063 IL_64879.2 | |
| IL_5ND9_173 | 1/a/1446:1448, 1/a/1476:1478 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_5ND9_174 | 1/a/1451:1454, 1/a/1471:1473 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 | |
| IL_5ND9_175 | 1/a/1456:1459, 1/a/1467:1469 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5ND9_001 | 1/A/30:31, 1/A/520:527, 1/A/554:555 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_5ND9_002 | 1/A/56:57, 1/A/70:76, 1/A/109:113 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_5ND9_003 | 1/A/272:276, 1/A/295:302, 1/A/415:416 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_5ND9_004 | 1/A/728:734, 1/A/818:820, 1/A/836:839 | No text annotation Not in a motif group | ||
| J3_5ND9_005 | 1/A/743:745, 1/A/777:781, 1/A/805:808 | No text annotation Not in a motif group | homologous J3_4WF9_003 NA | |
| J3_5ND9_006 | 1/A/1335:1340, 1/A/1669:1671, 1/A/1683:1686 | No text annotation Not in a motif group | homologous J3_4WF9_004 NA | |
| J3_5ND9_007 | 1/A/1343:1346, 1/A/1649:1655, 1/A/1664:1666 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_5ND9_008 | 1/A/1381:1387, 1/A/1418:1422, 1/A/1439:1440 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_5ND9_009 | 1/A/2118:2120, 1/A/2223:2228, 1/A/2249:2255 | No text annotation Not in a motif group | homologous J3_4WF9_007 NA | |
| J3_5ND9_010 | 1/A/2322:2324, 1/A/2348:2350, 1/A/2359:2364 | No text annotation Not in a motif group | homologous J3_4WF9_008 NA | |
| J3_5ND9_011 | 1/A/2544:2547, 1/A/2572:2574, 1/A/2588:2594 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_5ND9_012 | 1/A/2816:2817, 1/A/2826:2831, 1/A/2909:2913 | No text annotation Not in a motif group | homologous J3_7RQB_013 NA | |
| J3_5ND9_013 | 1/A/2834:2835, 1/A/2851:2856, 1/A/2902:2906 | No text annotation Not in a motif group | homologous J3_7A0S_013 NA | |
| J3_5ND9_014 | 1/a/47:48, 1/a/369:375, 1/a/401:403 | No text annotation Not in a motif group | ||
| J3_5ND9_015 | 1/a/594:596, 1/a/659:662, 1/a/762:763 | No text annotation Not in a motif group | ||
| J3_5ND9_016 | 1/a/680:681, 1/a/725:733, 1/a/740:742 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
| J3_5ND9_017 | 1/a/834:837, 1/a/867:871, 1/a/878:884 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_5ND9_018 | 1/a/953:956, 1/a/1246:1248, 1/a/1348:1351 | No text annotation Not in a motif group | homologous J3_6CZR_019 NA | |
| J3_5ND9_019 | 1/a/965:972, 1/a/983:994, 1/a/1232:1236 | No text annotation Not in a motif group | ||
| J3_5ND9_020 | 1/a/1000:1003, 1/a/1057:1059, 1/a/1221:1226 | No text annotation Not in a motif group | ||
| J3_5ND9_021 | 1/a/1075:1080, 1/a/1119:1125, 1/a/1198:1204 | No text annotation Not in a motif group | ||
| J3_5ND9_022 | 1/a/1085:1086, 1/a/1095:1099, 1/a/1110:1114 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_5ND9_023 | 1/a/1128:1130, 1/a/1166:1169, 1/a/1192:1195 | No text annotation Not in a motif group | ||
| J3_5ND9_024 | 1/a/1248:1252, 1/a/1307:1314, 1/a/1345:1348 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: