#Varna 2DMotifNum NtsInstances
1
  • IL_97217.12
IL_97217.12
  • Basepair signature: cWW-cWW
  • History status: Updated, 1 parent
  • Single bulged A (17)
  • Single bulged U (17)
  • Single bulged C (7)
  • Single bulged G (7)
  • Multiple bulged bases (6)
  • Major groove outside cWW, minor groove, intercalation pocket (2)
  • 4262
    2
    • IL_78141.1
    IL_78141.1
    • Basepair signature: cWW-cWW-cWW
    • History status: > 2 parents
  • Isolated non-canonical cWW with bulges (6)
  • CA cWW (3)
  • UU cWW (3)
  • CC cWW (1)
  • UU cWW water inserted (1)
  • Decoding loop with one bulged A (1)
  • 6228
    3
    • IL_41766.7
    IL_41766.7
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Updated, 1 parent
  • Tandem non-canonical cWW pairs (17)
  • 857
    4
    • IL_39199.5
    IL_39199.5
    • Basepair signature: cWW-tHS-cSH-cWW
    • History status: Updated, 1 parent
  • Major groove platform (6)
  • Major groove platform; stack outside cWW (2)
  • 556
    5
    • IL_56465.5
    IL_56465.5
    • Basepair signature: cWW-R-cWW
    • History status: Updated, 1 parent
  • Decoding loop related (3)
  • Single stack bend (1)
  • Stack and bulge (1)
  • 551
    6
    • IL_44540.5
    IL_44540.5
    • Basepair signature: cWW-cSH-tHS-cWW
    • History status: Updated, 1 parent
  • Minor groove platform (8)
  • 545
    7
    • IL_87904.6
    IL_87904.6
    • Basepair signature: cWW-tSH-tHS-tHS-cWW
    • History status: Updated, 1 parent
  • Triple sheared (7)
  • AAA cross-strand stack (1)
  • 1032
    8
    • IL_82444.2
    IL_82444.2
    • Basepair signature: cWW-cWH-cWW
    • History status: Updated, 2 parents
  • Isolated cWH basepair (9)
  • 628
    9
    • IL_13959.5
    IL_13959.5
    • Basepair signature: cWW-tSH-tHS-cWW
    • History status: Updated, 1 parent
  • Double sheared (4)
  • Decoding loop related (1)
  • 827
    10
    • IL_73276.6
    IL_73276.6
    • Basepair signature: cWW-tSW-tWH-cSH-cWS-cWW
    • History status: Updated, 1 parent
  • C-loop (4)
  • 724
    11
    • IL_28947.3
    IL_28947.3
    • Basepair signature: cWW-cWW
    • History status: Updated, 1 parent
  • Multiple bulged bases (3)
  • Basepair outside cWW (2)
  • Single bulged C (1)
  • Stack outside cWW (1)
  • 424
    12
    • IL_65553.9
    IL_65553.9
    • Basepair signature: cWW-cSS-tSS-L-tSH-tSS-tHS-tHW-cWW-tHS-cWW
    • History status: Updated, 1 parent
  • Kink-turn (7)
  • Kink-turn with non-sequential stacking (1)
  • 1223
    13
    • IL_93424.5
    IL_93424.5
    • Basepair signature: cWW-tSH-R-tHW-cWW
    • History status: Updated, 1 parent
  • UAA/GAN (2)
  • 922
    14
    • IL_92027.4
    IL_92027.4
    • Basepair signature: cWW-cSH-cSW-cWW
    • History status: Updated, 1 parent
  • Major groove outside cWW, minor groove, intercalation pocket (3)
  • Major groove minor groove platform; mini C-loop (2)
  • 619
    15
    • IL_85647.4
    IL_85647.4
    • Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Updated, 1 parent
  • 8x7 Sarcin-Ricin; G-bulge (5)
  • 1518
    16
    • IL_55938.5
    IL_55938.5
    • Basepair signature: cWW-cSH-cWW-cWW
    • History status: Updated, 1 parent
  • Isolated basepair with bulged bases (1)
  • 717
    17
    • IL_24982.6
    IL_24982.6
    • Basepair signature: cWW-tSH-tHW-tHS-cWW
    • History status: Updated, 1 parent
  • tSH-tHW-tHS (1)
  • 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)
  • 1016
    18
    • IL_37056.1
    IL_37056.1
    • Basepair signature: cWW-cWW
    • History status: > 2 parents
  • Multiple bulged bases (1)
  • Single bulged C (1)
  • 416
    19
    • IL_49493.5
    IL_49493.5
    • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Updated, 1 parent
  • Sarcin-Ricin target in LSU H95; G-bulge (1)
  • 7x6 Sarcin-Ricin; G-bulge (1)
  • 1315
    20
    • IL_67813.1
    IL_67813.1
    • Basepair signature: cWW-cWS-cWW
    • History status: > 2 parents
    615
    21
    • IL_94430.6
    IL_94430.6
    • Basepair signature: cWW-cSW-cWW
    • History status: Updated, 1 parent
    514
    22
    • IL_46648.7
    IL_46648.7
    • Basepair signature: cWW-tSH-cWW
    • History status: Updated, 1 parent
  • Minor groove platform (1)
  • Single stack bend (1)
  • Other IL (1)
  • 514
    23
    • IL_43124.3
    IL_43124.3
    • Basepair signature: cWW-cSH-tHS-cWW
    • History status: Updated, 1 parent
  • Major groove platform with extra pair (2)
  • 713
    24
    • IL_31555.6
    IL_31555.6
    • Basepair signature: cWW-cWW-tSH-tHS-cWW
    • History status: Updated, 2 parents
  • Tandem non-canonical cWW pairs (2)
  • UAA/GAN variation (1)
  • UAA/GAN related (1)
  • 913
    25
    • IL_37104.4
    IL_37104.4
    • Basepair signature: cWW-tHS-cWW
    • History status: Updated, 1 parent
  • Isolated tHS basepair with bulges (2)
  • 613
    26
    • IL_24546.5
    IL_24546.5
    • Basepair signature: cWW-L-L-L-cSH-L-cWW
    • History status: Updated, 1 parent
    1010
    27
    • IL_58291.5
    IL_58291.5
    • Basepair signature: cWW-L-L-cWW
    • History status: Updated, 1 parent
    610
    28
    • IL_47444.3
    IL_47444.3
    • Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW
    • History status: Exact match
  • tSH-tHW-tHS-cWW (2)
  • Other IL (1)
  • 129
    29
    • IL_92114.3
    IL_92114.3
    • Basepair signature: cWW-cSH-tHW-L-cWW
    • History status: Exact match
  • Receptor of 11-nt loop-receptor motif (4)
  • 99
    30
    • IL_02809.3
    IL_02809.3
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (3)
  • Pseudoknot (2)
  • 89
    31
    • IL_55214.1
    IL_55214.1
    • Basepair signature: cWW-cSW-R-cWW
    • History status: New id, 2 parents
    78
    32
    • IL_74856.1
    IL_74856.1
    • Basepair signature: cWW-cWW-cSH-R-cWW
    • History status: New id, 2 parents
    88
    33
    • IL_65554.1
    IL_65554.1
    • Basepair signature: cWW-cWW-cSW-cWW-cSH-cWW
    • History status: > 2 parents
    98
    34
    • IL_71837.1
    IL_71837.1
    • Basepair signature: cWW-cWW-cWW
    • History status: > 2 parents
    68
    35
    • IL_73000.2
    IL_73000.2
    • Basepair signature: cWW-cSW-cSH-cWW
    • History status: Exact match
  • Minor groove platform (1)
  • 67
    36
    • IL_08926.4
    IL_08926.4
    • Basepair signature: cWW-cHH-cWW
    • History status: Updated, 1 parent
    57
    37
    • IL_64847.1
    IL_64847.1
    • Basepair signature: cWW-tSH-tWH-tSH-tHS-cWW
    • History status: New id, 1 parent
    107
    38
    • IL_92321.4
    IL_92321.4
    • Basepair signature: cWW-cWW-tSH-tHS-tHS-cWW
    • History status: Exact match
    127
    39
    • IL_53635.4
    IL_53635.4
    • Basepair signature: cWW-R-tHW-tHW-tWW-cWW
    • History status: Updated, 1 parent
  • tHW-tHW cross-strand stack (1)
  • 117
    40
    • IL_97057.4
    IL_97057.4
    • Basepair signature: cWW-cWW-tWH-L-tHS-cWW
    • History status: Updated, 1 parent
    117
    41
    • IL_70237.4
    IL_70237.4
    • Basepair signature: cWW-L-L-cWS-tSW-R-R-cWW
    • History status: Updated, 1 parent
    106
    42
    • IL_13069.4
    IL_13069.4
    • Basepair signature: cWW-cWW
    • History status: Updated, 1 parent
    46
    43
    • IL_86357.4
    IL_86357.4
    • Basepair signature: cWW-tWW-cWW
    • History status: Updated, 1 parent
    66
    44
    • IL_25230.4
    IL_25230.4
    • Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW
    • History status: Updated, 1 parent
  • Bacterial 5S Loop E (4)
  • 186
    45
    • IL_72158.4
    IL_72158.4
    • Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW
    • History status: Updated, 1 parent
    126
    46
    • IL_93568.3
    IL_93568.3
    • Basepair signature: cWW-tSH-tHS-tHS-L-R-cWW
    • History status: Updated, 1 parent
    126
    47
    • IL_77263.2
    IL_77263.2
    • Basepair signature: cWW-tSS-L-tSH-tHS-cWW
    • History status: Exact match
  • Kink-turn from U4 (3)
  • 106
    48
    • IL_59864.1
    IL_59864.1
    • Basepair signature: cWW-L-L-L-tHS-cWW
    • History status: New id, 1 parent
    95
    49
    • IL_82133.1
    IL_82133.1
    • Basepair signature: cWW-L-R-cWS-cWW
    • History status: New id, 2 parents
    85
    50
    • IL_46960.1
    IL_46960.1
    • Basepair signature: cWW-R-cWW
    • History status: New id, 2 parents
    55
    51
    • IL_79083.4
    IL_79083.4
    • Basepair signature: cWW-tSH-L-R-L-tHH-cWW
    • History status: Updated, 1 parent
    115
    52
    • IL_09530.2
    IL_09530.2
    • Basepair signature: cWW-cWH-L-R-cWW
    • History status: Updated, 2 parents
  • cWH basepair and non-canonical AC (2)
  • 85
    53
    • IL_44067.5
    IL_44067.5
    • Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW
    • History status: Updated, 1 parent
    145
    54
    • IL_71229.1
    IL_71229.1
    • Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW
    • History status: New id, 1 parent
    135
    55
    • IL_48183.1
    IL_48183.1
    • Basepair signature: cWW-tWH-tHS-cWW
    • History status: New id, 1 parent
    85
    56
    • IL_04397.1
    IL_04397.1
    • Basepair signature: cWW-tWH-L-tHW-cSH-cWW
    • History status: New id, 1 parent
    115
    57
    • IL_90133.4
    IL_90133.4
    • Basepair signature: cWW-tHS-cWW-cWW
    • History status: Updated, 2 parents
    75
    58
    • IL_16029.1
    IL_16029.1
    • Basepair signature: cWW-cWW-cWW
    • History status: > 2 parents
    65
    59
    • IL_02359.4
    IL_02359.4
    • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
    • History status: Updated, 1 parent
    165
    60
    • IL_42251.1
    IL_42251.1
    • Basepair signature: cWW-L-cSH-cWW
    • History status: Exact match
  • Major groove platform with intercalated tWH (1)
  • 64
    61
    • IL_08763.1
    IL_08763.1
    • Basepair signature: cWW-cWW
    • History status: New id, 2 parents
  • Single bulged A (1)
  • 44
    62
    • IL_39526.4
    IL_39526.4
    • Basepair signature: cWW-L-L-L-L-L-cWW
    • History status: Exact match
    94
    63
    • IL_55114.1
    IL_55114.1
    • Basepair signature: cWW-L-R-tHS-cWW
    • History status: New id, 1 parent
    84
    64
    • IL_39980.1
    IL_39980.1
    • Basepair signature: cWW-L-cSH-cWW
    • History status: Exact match
    64
    65
    • IL_31066.3
    IL_31066.3
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
    54
    66
    • IL_82188.2
    IL_82188.2
    • Basepair signature: cWW-tSH-L-R-R-R-R-L-L-L-cWW
    • History status: Exact match
    144
    67
    • IL_95652.3
    IL_95652.3
    • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW
    • History status: Exact match
    144
    68
    • IL_31663.1
    IL_31663.1
    • Basepair signature: cWW-cWW-L-cWW
    • History status: Exact match
    74
    69
    • IL_47758.2
    IL_47758.2
    • Basepair signature: cWW-cHW-cWW-cWW
    • History status: Exact match
    84
    70
    • IL_15123.1
    IL_15123.1
    • Basepair signature: cWW-L-R-cHW-L-L-L-L-L-cWW
    • History status: New id, 1 parent
    134
    71
    • IL_28572.2
    IL_28572.2
    • Basepair signature: cWW-R-R-tWH-cSW-L-R-R-L-tHS-cWW
    • History status: Exact match
    154
    72
    • IL_66654.1
    IL_66654.1
    • Basepair signature: cWW-L-R-cWW
    • History status: > 2 parents
    64
    73
    • IL_56594.1
    IL_56594.1
    • Basepair signature: cWW-cWW-cWW
    • History status: New id, 1 parent
    64
    74
    • IL_01080.1
    IL_01080.1
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
    54
    75
    • IL_48918.3
    IL_48918.3
    • Basepair signature: cWW-tSH-tSH-tHS-tSS-R-cWW
    • History status: Exact match
  • Kink-turn (1)
  • 124
    76
    • IL_22732.1
    IL_22732.1
    • Basepair signature: cWW-tSH-tWH-tHS-cWW
    • History status: Exact match
  • tSH-tHW (1)
  • 94
    77
    • IL_32261.1
    IL_32261.1
    • Basepair signature: cWW-R-R-tHS-cWW
    • History status: > 2 parents
  • Major groove minor groove platform with extra cWW (1)
  • 84
    78
    • IL_87065.2
    IL_87065.2
    • Basepair signature: cWW-R-cWW
    • History status: Updated, 1 parent
    54
    79
    • IL_16166.5
    IL_16166.5
    • Basepair signature: cWW-L-cWW
    • History status: Updated, 1 parent
  • Basepair outside cWW, intercalation pocket (1)
  • 54
    80
    • IL_34363.2
    IL_34363.2
    • Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-R-R-L-cWW
    • History status: Exact match
    134
    81
    • IL_05723.2
    IL_05723.2
    • Basepair signature: cWW-R-cSH-tWH-tHS-cWW
    • History status: Updated, 1 parent
    103
    82
    • IL_34628.2
    IL_34628.2
    • Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW
    • History status: Exact match
  • Kink-turn (1)
  • 123
    83
    • IL_52173.1
    IL_52173.1
    • Basepair signature: cWW-L-R-R-R-L-cWW
    • History status: Exact match
    93
    84
    • IL_30840.2
    IL_30840.2
    • Basepair signature: cWW-cWW-L-cWW-cWW-cWW
    • History status: Exact match
    113
    85
    • IL_69106.2
    IL_69106.2
    • Basepair signature: cWW-L-cWW-cWW
    • History status: Updated, 2 parents
    73
    86
    • IL_06180.1
    IL_06180.1
    • Basepair signature: cWW-R-tWH-tHS-cWW
    • History status: Exact match
    93
    87
    • IL_69536.2
    IL_69536.2
    • Basepair signature: cWW-tSH-R-R-cWW
    • History status: Updated, 1 parent
    83
    88
    • IL_37053.1
    IL_37053.1
    • Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW
    • History status: Exact match
    123
    89
    • IL_98421.5
    IL_98421.5
    • Basepair signature: cWW-R-R-R-cWW
    • History status: Updated, 2 parents
    73
    90
    • IL_06211.3
    IL_06211.3
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    73
    91
    • IL_89252.1
    IL_89252.1
    • Basepair signature: cWW-L-R-R-R-L-tHW-L-R-cWW
    • History status: New id, 1 parent
    133
    92
    • IL_43946.1
    IL_43946.1
    • Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW
    • History status: Exact match
  • Kink-turn (2)
  • 123
    93
    • IL_74876.2
    IL_74876.2
    • Basepair signature: cWW-tWH-L-R-tHS-cWW
    • History status: Exact match
    103
    94
    • IL_79955.2
    IL_79955.2
    • Basepair signature: cWW-cWW-cWW-cWW-cSW-cWW
    • History status: Exact match
    123
    95
    • IL_82563.1
    IL_82563.1
    • Basepair signature: cWW-R-tWH-R-R-R-cWW
    • History status: Exact match
    103
    96
    • IL_37171.1
    IL_37171.1
    • Basepair signature: cWW-cWW-tSH-L-R-cWW-cWW
    • History status: New id, 2 parents
    123
    97
    • IL_95908.1
    IL_95908.1
    • Basepair signature: cWW-cWW
    • History status: New id, 2 parents
    43
    98
    • IL_25271.2
    IL_25271.2
    • Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW
    • History status: Exact match
    143
    99
    • IL_62499.8
    IL_62499.8
    • Basepair signature: cWW-R-cWW
    • History status: Updated, 2 parents
  • 180 degree turn (1)
  • 53
    100
    • IL_80348.3
    IL_80348.3
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
    53
    101
    • IL_58586.3
    IL_58586.3
    • Basepair signature: cWW-R-R-cWW
    • History status: Updated, 1 parent
    63
    102
    • IL_67887.2
    IL_67887.2
    • Basepair signature: cWW-tSH-cWW
    • History status: Updated, 1 parent
  • Minor groove platform (1)
  • 53
    103
    • IL_07300.2
    IL_07300.2
    • Basepair signature: cWW-cSH-L-cWW-cWW
    • History status: Exact match
    93
    104
    • IL_72641.1
    IL_72641.1
    • Basepair signature: cWW-L-R-cWW
    • History status: New id, 1 parent
  • CC cWW (1)
  • Isolated near basepair (1)
  • 63
    105
    • IL_94403.6
    IL_94403.6
    • Basepair signature: cWW-L-L-tWH-L-L-L-cWW
    • History status: Updated, 1 parent
    113
    106
    • IL_97509.2
    IL_97509.2
    • Basepair signature: cWW-L-R-cWW-cWW-cWW
    • History status: Updated, 1 parent
    103
    107
    • IL_16415.3
    IL_16415.3
    • Basepair signature: cWW-L-R-R-L-tWH-tHS-tSS-tSS-R-cWW
    • History status: Updated, 1 parent
    142
    108
    • IL_30534.1
    IL_30534.1
    • Basepair signature: cWW-R-R-cWW
    • History status: New id, 2 parents
    62
    109
    • IL_23414.1
    IL_23414.1
    • Basepair signature: cWW-L-R-R-R-cSH-R-bif-tWH-R-R-R-R-R-L-cWW
    • History status: Exact match
    212
    110
    • IL_46435.1
    IL_46435.1
    • Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW
    • History status: Exact match
    132
    111
    • IL_12204.1
    IL_12204.1
    • Basepair signature: cWW-L-R-R-L-L-L-cWW
    • History status: New id, 2 parents
    102
    112
    • IL_97833.1
    IL_97833.1
    • Basepair signature: cWW-cSW-tSH-tWH-tHW-tHS-cWW-cWW
    • History status: Exact match
  • tSH-tHW-tHS with extra cWW pairs (1)
  • 142
    113
    • IL_16977.1
    IL_16977.1
    • Basepair signature: cWW-tSS-L-cSS-R-L-cWW
    • History status: New id, 2 parents
    82
    114
    • IL_94744.1
    IL_94744.1
    • Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (1)
  • 172
    115
    • IL_12211.1
    IL_12211.1
    • Basepair signature: cWW-L-R-R-R-L-L-cWW-cWW
    • History status: Exact match
    122
    116
    • IL_60613.1
    IL_60613.1
    • Basepair signature: cWW-L-R-R-R-cWW
    • History status: New id, 1 parent
    82
    117
    • IL_65137.1
    IL_65137.1
    • Basepair signature: cWW-L-cSS-tWH-tHW-L-cWW-cWW
    • History status: Exact match
    122
    118
    • IL_78744.1
    IL_78744.1
    • Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW
    • History status: Exact match
  • Quadruple sheared (1)
  • 122
    119
    • IL_43545.1
    IL_43545.1
    • Basepair signature: cWW-cWW-L-R-L-cWW
    • History status: New id, 1 parent
    92
    120
    • IL_95150.7
    IL_95150.7
    • Basepair signature: cWW-cHW-tHS-cWW
    • History status: Updated, 1 parent
    72
    121
    • IL_52940.1
    IL_52940.1
    • Basepair signature: cWW-L-R-R-R-R-L-L-L-tWW-cWW
    • History status: Exact match
    142
    122
    • IL_98566.1
    IL_98566.1
    • Basepair signature: cWW-L-R-R-R-cWW
    • History status: Exact match
    82
    123
    • IL_70401.1
    IL_70401.1
    • Basepair signature: cWW-L-L-tWW-L-L-L-cWW
    • History status: Exact match
    112
    124
    • IL_28003.2
    IL_28003.2
    • Basepair signature: cWW-cSH-tHW-cWW
    • History status: Updated, 1 parent
  • Receptor of 11-nt loop-receptor motif (2)
  • 82
    125
    • IL_40892.1
    IL_40892.1
    • Basepair signature: cWW-L-L-L-L-cWW
    • History status: Exact match
    82
    126
    • IL_09587.1
    IL_09587.1
    • Basepair signature: cWW-cWW-L-R-R-L-L-cWW
    • History status: Exact match
    112
    127
    • IL_80093.1
    IL_80093.1
    • Basepair signature: cWW-L-R-tHH-tHS-cWW
    • History status: Exact match
    102
    128
    • IL_90057.1
    IL_90057.1
    • Basepair signature: cWW-tSS-L-L-cSS-tWH-tSW-cWS-cSS-tWS-cSH-cWH-cHW-cSH-R-R-cWW
    • History status: Exact match
    232
    129
    • IL_21495.1
    IL_21495.1
    • Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW
    • History status: Exact match
    142
    130
    • IL_31707.1
    IL_31707.1
    • Basepair signature: cWW-L-L-L-cWW-L-bif-cWW
    • History status: Exact match
  • Vitamin B12 Aptamer (1)
  • 112
    131
    • IL_92422.1
    IL_92422.1
    • Basepair signature: cWW-L-L-L-L-cWW
    • History status: New id, no parents
    82
    132
    • IL_09882.1
    IL_09882.1
    • Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW
    • History status: Exact match
  • tSH-tHW-tWH-tHS (2)
  • 122
    133
    • IL_37197.1
    IL_37197.1
    • Basepair signature: cWW-L-L-L-tHS-cWW-cWW
    • History status: Exact match
    112
    134
    • IL_76095.3
    IL_76095.3
    • Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-cWW-cWW
    • History status: Exact match
    182
    135
    • IL_21639.1
    IL_21639.1
    • Basepair signature: cWW-L-tWH-R-R-R-cWW
    • History status: Exact match
    92
    136
    • IL_92576.1
    IL_92576.1
    • Basepair signature: cWW-L-R-cWW
    • History status: New id, 1 parent
    62
    137
    • IL_87064.1
    IL_87064.1
    • Basepair signature: cWW-L-R-L-tHS-cWW
    • History status: New id, 1 parent
    92
    138
    • IL_67024.1
    IL_67024.1
    • Basepair signature: cWW-R-R-R-tSW-L-cWW
    • History status: New id, 2 parents
    102
    139
    • IL_80494.3
    IL_80494.3
    • Basepair signature: cWW-tWH-L-R-tHS-bif-cWW
    • History status: Updated, 1 parent
    122
    140
    • IL_90735.1
    IL_90735.1
    • Basepair signature: cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW
    • History status: Exact match
    162
    141
    • IL_45794.1
    IL_45794.1
    • Basepair signature: cWW-L-R-R-tWW-tWW-cWW
    • History status: Exact match
    112
    142
    • IL_11751.1
    IL_11751.1
    • Basepair signature: cWW-L-L-L-cWW
    • History status: Exact match
    72
    143
    • IL_39175.1
    IL_39175.1
    • Basepair signature: cWW-R-R-R-R-R-cWW
    • History status: New id, 1 parent
    92
    144
    • IL_77076.1
    IL_77076.1
    • Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW
    • History status: Exact match
    182
    145
    • IL_90877.1
    IL_90877.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: New id, 1 parent
    72
    146
    • IL_33842.1
    IL_33842.1
    • Basepair signature: cWW-cSH-L-cWS-cWW
    • History status: Exact match
  • Major groove minor groove platform with intercalation; mini C-loop (2)
  • 72
    147
    • IL_25541.1
    IL_25541.1
    • Basepair signature: cWW-tSH-L-R-R-R-L-cWW
    • History status: New id, 1 parent
    112
    148
    • IL_05641.1
    IL_05641.1
    • Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW
    • History status: New id, 1 parent
    202
    149
    • IL_16330.1
    IL_16330.1
    • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
    • History status: Exact match
    252
    150
    • IL_30381.1
    IL_30381.1
    • Basepair signature: cWW-cWW-L-R-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (1)
  • 82
    151
    • IL_12147.1
    IL_12147.1
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
    62
    152
    • IL_50521.1
    IL_50521.1
    • Basepair signature: cWW-tSH-cWH-tWH-tSS-tHW-L-cWW
    • History status: Exact match
    142
    153
    • IL_87548.1
    IL_87548.1
    • Basepair signature: cWW-tSH-tHW-L-cSH-R-cWW
    • History status: Exact match
    112
    154
    • IL_54954.1
    IL_54954.1
    • Basepair signature: cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
    • History status: Exact match
    161
    155
    • IL_68767.1
    IL_68767.1
    • Basepair signature: cWW-L-L-cWW
    • History status: Exact match
    61
    156
    • IL_80714.1
    IL_80714.1
    • Basepair signature: cWW-tSH-L-R-R-L-L-L-cWW
    • History status: Exact match
    121
    157
    • IL_91078.1
    IL_91078.1
    • Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW
    • History status: Exact match
    121
    158
    • IL_02897.1
    IL_02897.1
    • Basepair signature: cWW-L-R-cWW-L-L-tSW-L-cWW
    • History status: Exact match
    131
    159
    • IL_26448.1
    IL_26448.1
    • Basepair signature: cWW-R-R-R-tSW-L-L-cWW
    • History status: New id, no parents
    111
    160
    • IL_64589.1
    IL_64589.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    71
    161
    • IL_06177.1
    IL_06177.1
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
    61
    162
    • IL_81398.1
    IL_81398.1
    • Basepair signature: cWW-L-R-cWW-cWW-cWW
    • History status: Exact match
    101
    163
    • IL_91089.1
    IL_91089.1
    • Basepair signature: cWW-L-L-L-L-cWW
    • History status: Exact match
    81
    164
    • IL_23639.1
    IL_23639.1
    • Basepair signature: cWW-tWH-tHS-L-cWW
    • History status: Exact match
    91
    165
    • IL_36006.1
    IL_36006.1
    • Basepair signature: cWW-cWW-L-cWW
    • History status: New id, no parents
    71
    166
    • IL_59934.1
    IL_59934.1
    • Basepair signature: cWW-tSH-tWH-tHS-R-R-cWW
    • History status: Exact match
    121
    167
    • IL_85805.1
    IL_85805.1
    • Basepair signature: cWW-L-R-R-R-cWW
    • History status: Exact match
    81
    168
    • IL_02957.1
    IL_02957.1
    • Basepair signature: cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW
    • History status: Exact match
    261
    169
    • IL_26868.1
    IL_26868.1
    • Basepair signature: cWW-tSH-tHW-tWW-cWW
    • History status: Exact match
    101
    170
    • IL_52509.1
    IL_52509.1
    • Basepair signature: cWW-cWW-L-L-tHS-cWW
    • History status: Exact match
    101
    171
    • IL_78513.1
    IL_78513.1
    • Basepair signature: cWW-L-R-R-R-cWW
    • History status: Exact match
    81
    172
    • IL_88119.1
    IL_88119.1
    • Basepair signature: cWW-cSH-R-cWW
    • History status: Exact match
    61
    173
    • IL_97842.1
    IL_97842.1
    • Basepair signature: cWW-R-R-R-R-cWS-cWW-cWW-L-R-cWW
    • History status: Exact match
    161
    174
    • IL_17682.1
    IL_17682.1
    • Basepair signature: cWW-L-R-tSH-tHW-cSH-tHH-tHS-cWW-cWW
    • History status: Exact match
    171
    175
    • IL_43316.1
    IL_43316.1
    • Basepair signature: cWW-tSH-L-L-tHH-cWW
    • History status: Exact match
    101
    176
    • IL_91904.1
    IL_91904.1
    • Basepair signature: cWW-L-R-R-L-L-cSS-L-cWW-cWW
    • History status: Exact match
    131
    177
    • IL_09333.1
    IL_09333.1
    • Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW
    • History status: Exact match
    121
    178
    • IL_73656.1
    IL_73656.1
    • Basepair signature: cWW-L-R-R-R-L-L-L-L-cWW-cWW
    • History status: New id, no parents
    141
    179
    • IL_86059.1
    IL_86059.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
    41
    180
    • IL_94973.1
    IL_94973.1
    • Basepair signature: cWW-L-R-L-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
    141
    181
    • IL_03110.1
    IL_03110.1
    • Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW
    • History status: Exact match
    131
    182
    • IL_12507.1
    IL_12507.1
    • Basepair signature: cWW-cSS-cSS-R-R-L-L-L-cWW
    • History status: Exact match
    111
    183
    • IL_26971.1
    IL_26971.1
    • Basepair signature: cWW-tSH-L-R-R-R-L-cWW
    • History status: Exact match
    101
    184
    • IL_40527.1
    IL_40527.1
    • Basepair signature: cWW-L-R-tSS-L-tSH-L-R-L-cWW-cWW
    • History status: Exact match
    151
    185
    • IL_52610.1
    IL_52610.1
    • Basepair signature: cWW-tSS-tSH-L-L-L-L-cWW-L-L-L-L-L-L-L-L-cSS-L-L-L-cSW-cWW-L-cWW-R-tSH-R-R-R-R
    • History status: Exact match
    361
    186
    • IL_88367.1
    IL_88367.1
    • Basepair signature: cWW-bif-R-cSH-tWH-tHS-L-R-tSH-cWW
    • History status: Exact match
    151
    187
    • IL_20775.1
    IL_20775.1
    • Basepair signature: cWW-R-tHS-cWW
    • History status: Exact match
    71
    188
    • IL_31224.1
    IL_31224.1
    • Basepair signature: cWW-L-R-R-cWW
    • History status: Exact match
    71
    189
    • IL_55649.1
    IL_55649.1
    • Basepair signature: cWW-tWH-L-R-cWW
    • History status: Exact match
    81
    190
    • IL_09491.1
    IL_09491.1
    • Basepair signature: cWW-L-L-L-cWW
    • History status: Exact match
    71
    191
    • IL_60649.1
    IL_60649.1
    • Basepair signature: cWW-cSS-L-L-L-tSS-tHW-L-R-cWW
    • History status: Exact match
    111
    192
    • IL_86336.1
    IL_86336.1
    • Basepair signature: cWW-L-R-L-L-L-cWW
    • History status: Exact match
    91
    193
    • IL_03282.1
    IL_03282.1
    • Basepair signature: cWW-tHW-tHS-cWW-cWW
    • History status: Exact match
    101
    194
    • IL_27640.1
    IL_27640.1
    • Basepair signature: cWW-cWW-L-R-R-R-R-R-L-tHS-cWW
    • History status: Exact match
    151
    195
    • IL_40845.1
    IL_40845.1
    • Basepair signature: cWW-cSW-cSH-R-cWW
    • History status: Exact match
    71
    196
    • IL_06306.1
    IL_06306.1
    • Basepair signature: cWW-L-R-R-R-R-R-R-R-L-cWW
    • History status: Exact match
    131
    197
    • IL_21077.1
    IL_21077.1
    • Basepair signature: cWW-L-R-R-R-cWW
    • History status: Exact match
    81
    198
    • IL_25082.1
    IL_25082.1
    • Basepair signature: cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW
    • History status: Exact match
    171
    199
    • IL_47687.1
    IL_47687.1
    • Basepair signature: cWW-tWH-tWH-tWH-L-R-L-tWW-cWW
    • History status: Exact match
    131
    200
    • IL_61730.1
    IL_61730.1
    • Basepair signature: cWW-L-R-L-tHW-L-L-cWW
    • History status: Exact match
    111
    201
    • IL_03625.1
    IL_03625.1
    • Basepair signature: cWW-R-R-cWW
    • History status: New id, no parents
    61
    202
    • IL_52958.1
    IL_52958.1
    • Basepair signature: cWW-L-R-R-L-L-cWW
    • History status: Exact match
    91
    203
    • IL_89794.1
    IL_89794.1
    • Basepair signature: cWW-tSH-tSH-tSS-tSS-R-cWW
    • History status: Exact match
    111
    204
    • IL_98655.1
    IL_98655.1
    • Basepair signature: cWW-L-cHW-L-L-tHH-tSW-L-cWW
    • History status: Exact match
    131
    205
    • IL_06421.1
    IL_06421.1
    • Basepair signature: cWW-tHS-tHS-cWW
    • History status: Exact match
    71
    206
    • IL_21254.1
    IL_21254.1
    • Basepair signature: cWW-tWH-cWW-tHS-tSS-R-R-cWW
    • History status: Exact match
    121
    207
    • IL_62296.1
    IL_62296.1
    • Basepair signature: cWW-tSS-cSS-cWW-L-R-R-L-L-L-cWW
    • History status: New id, no parents
    131
    208
    • IL_75415.1
    IL_75415.1
    • Basepair signature: cWW-L-L-L-L-L-L-cWW
    • History status: Exact match
    101
    209
    • IL_86453.1
    IL_86453.1
    • Basepair signature: cWW-R-R-cWW-cWW
    • History status: New id, 1 parent
  • Isolated non-canonical cWW with bulges (1)
  • 81
    210
    • IL_03808.1
    IL_03808.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-cWW
    • History status: New id, no parents
    131
    211
    • IL_41027.1
    IL_41027.1
    • Basepair signature: cWW-bif-R-cSH-tWH-tHS-cWW
    • History status: New id, no parents
    121
    212
    • IL_53323.1
    IL_53323.1
    • Basepair signature: cWW-L-R-R-L-cWW-cWW
    • History status: Exact match
    101
    213
    • IL_98924.1
    IL_98924.1
    • Basepair signature: cWW-L-L-L-cWW-cWW
    • History status: Exact match
    91
    214
    • IL_06468.1
    IL_06468.1
    • Basepair signature: cWW-tWH-R-R-R-cWW-cWW
    • History status: Exact match
    101
    215
    • IL_71685.1
    IL_71685.1
    • Basepair signature: cWW-cWW-bif-R-cSH-tWH-tHS-cWW
    • History status: Exact match
    141
    216
    • IL_82601.1
    IL_82601.1
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (1)
  • 81
    217
    • IL_86981.1
    IL_86981.1
    • Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW
    • History status: Exact match
    151
    218
    • IL_96920.1
    IL_96920.1
    • Basepair signature: cWW-cSH-tWH-L-cWW
    • History status: New id, 1 parent
    71
    219
    • IL_15205.1
    IL_15205.1
    • Basepair signature: cWW-cWW-L-cSW-L-tHS-cWW
    • History status: Exact match
    121
    220
    • IL_28644.1
    IL_28644.1
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
    51
    221
    • IL_41139.1
    IL_41139.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    71
    222
    • IL_66744.1
    IL_66744.1
    • Basepair signature: cWW-L-R-R-L-L-L-L-cWW-cWW
    • History status: Exact match
    131
    223
    • IL_99937.1
    IL_99937.1
    • Basepair signature: cWW-R-R-tWS-L-R-cWW
    • History status: New id, 1 parent
    101
    224
    • IL_06471.1
    IL_06471.1
    • Basepair signature: cWW-cSW-tWH-tSW-cSH-L-cWS-R-cWW
    • History status: Exact match
    101
    225
    • IL_31754.1
    IL_31754.1
    • Basepair signature: cWW-cSW-tHW-cSH-tWH-tHS-cWW
    • History status: Exact match
    131
    226
    • IL_45432.1
    IL_45432.1
    • Basepair signature: cWW-tSH-tHW-tWH-L-R-R-L-cWW
    • History status: New id, no parents
    141
    227
    • IL_57977.1
    IL_57977.1
    • Basepair signature: cWW-tSH-L-R-L-tHS-cWW
    • History status: Exact match
    111
    228
    • IL_82650.1
    IL_82650.1
    • Basepair signature: cWW-cWS-tSH-tHS-L-R-L-cWW
    • History status: Exact match
    131
    229
    • IL_11302.1
    IL_11302.1
    • Basepair signature: cWW-L-R-R-tHW-L-cWW
    • History status: Exact match
    101
    230
    • IL_25307.1
    IL_25307.1
    • Basepair signature: cWW-tHH-L-R-L-cWW
    • History status: Exact match
    91
    231
    • IL_37347.1
    IL_37347.1
    • Basepair signature: cWW-cHW-L-tHW-tHW-tHW-bif-cWW
    • History status: Exact match
    151
    232
    • IL_63133.1
    IL_63133.1
    • Basepair signature: cWW-cWW-cWW
    • History status: Exact match
    61
    233
    • IL_76486.1
    IL_76486.1
    • Basepair signature: cWW-tSH-tSW-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
    151
    234
    • IL_05221.1
    IL_05221.1
    • Basepair signature: cWW-cWW-bif-tHW-cWH-tSW-cSH-cWH-cSH-tHS-cWW
    • History status: Exact match
    151
    235
    • IL_41516.1
    IL_41516.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: New id, no parents
    71
    236
    • IL_53988.1
    IL_53988.1
    • Basepair signature: cWW-cSW-L-L-tHS-cWS-cWW
    • History status: Exact match
    121
    237
    • IL_06808.1
    IL_06808.1
    • Basepair signature: cWW-tSH-tHS-cWW
    • History status: Exact match
    81
    238
    • IL_83250.1
    IL_83250.1
    • Basepair signature: cWW-tWH-R-R-R-cSH-cWW-cWW
    • History status: Exact match
    111
    239
    • IL_25420.1
    IL_25420.1
    • Basepair signature: cWW-tSH-tWH-tWH-L-R-R-L-L-tSH-cWW
    • History status: New id, no parents
    161
    240
    • IL_63253.1
    IL_63253.1
    • Basepair signature: cWW-R-R-cWW
    • History status: Exact match
    61
    241
    • IL_97191.1
    IL_97191.1
    • Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)
  • 131
    242
    • IL_05513.1
    IL_05513.1
    • Basepair signature: cWW-L-L-L-tWH-L-L-L-cWW
    • History status: Exact match
    121
    243
    • IL_30067.1
    IL_30067.1
    • Basepair signature: cWW-R-bif-tHW-tHS-cWW
    • History status: Exact match
    101
    244
    • IL_54450.1
    IL_54450.1
    • Basepair signature: cWW-L-R-cWW-cWW
    • History status: Exact match
    81
    245
    • IL_80505.1
    IL_80505.1
    • Basepair signature: cWW-L-R-R-R-R-R-R-cWW
    • History status: Exact match
    111
    246
    • IL_06847.1
    IL_06847.1
    • Basepair signature: cWW-R-cSW-R-R-tHS-cWW
    • History status: Exact match
    111
    247
    • IL_22909.1
    IL_22909.1
    • Basepair signature: cWW-L-cSH-R-R-R-cWW
    • History status: Exact match
    91
    248
    • IL_46151.1
    IL_46151.1
    • Basepair signature: cWW-tSH-tSH-tHS-bif-cWW
    • History status: New id, 1 parent
    111
    249
    • IL_72293.1
    IL_72293.1
    • Basepair signature: cWW-tSH-R-tHH-tHS-cWW
    • History status: New id, no parents
    111
    250
    • IL_83920.1
    IL_83920.1
    • Basepair signature: cWW-cWW-L-cWW
    • History status: Exact match
    71
    251
    • IL_11778.1
    IL_11778.1
    • Basepair signature: cWW-R-R-R-cWW
    • History status: Exact match
    71
    252
    • IL_49527.1
    IL_49527.1
    • Basepair signature: cWW-R-R-cWW-cWW-cWW
    • History status: Exact match
    101
    253
    • IL_63952.1
    IL_63952.1
    • Basepair signature: cWW-L-R-R-tHW-tHW-L-R-cWW
    • History status: Exact match
    131
    254
    • IL_87523.1
    IL_87523.1
    • Basepair signature: cWW-R-R-R-R-tHS-cWW
    • History status: Exact match
    101
    255
    • IL_41791.1
    IL_41791.1
    • Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW
    • History status: Exact match
    111
    256
    • IL_54470.1
    IL_54470.1
    • Basepair signature: cWW-tHS-tHS-cWW
    • History status: Exact match
    81
    257
    • IL_80652.1
    IL_80652.1
    • Basepair signature: cWW-R-cSH-tWH-tSH-tHS-cWW
    • History status: Exact match
    131
    258
    • IL_91044.1
    IL_91044.1
    • Basepair signature: cWW-L-R-tHW-cWW
    • History status: Exact match
    81
    259
    • IL_23302.1
    IL_23302.1
    • Basepair signature: cWW-R-R-R-R-cWW
    • History status: New id, no parents
    81
    260
    • IL_46306.1
    IL_46306.1
    • Basepair signature: cWW-L-R-R-cWW-cWW
    • History status: Exact match
    91
    261
    • IL_59529.1
    IL_59529.1
    • Basepair signature: cWW-tWH-tHH-tHS-cWW
    • History status: Exact match
    101
    262
    • IL_85510.1
    IL_85510.1
    • Basepair signature: cWW-L-L-cWW
    • History status: Exact match
    61
    263
    • IL_02835.1
    IL_02835.1
    • Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW
    • History status: Exact match
    131
    264
    • IL_25771.1
    IL_25771.1
    • Basepair signature: cWW-R-R-R-cWW
    • History status: New id, 1 parent
    71
    265
    • IL_39324.1
    IL_39324.1
    • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW
    • History status: Exact match
    181
    266
    • IL_64213.1
    IL_64213.1
    • Basepair signature: cWW-L-R-L-L-cWW
    • History status: New id, 1 parent
    81
    267
    • IL_77296.1
    IL_77296.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW
    • History status: Exact match
    141

    Coloring options:


    Exact match 172; Updated, 1 parent 46; New id, no parents 14; New id, 1 parent 24; New id, 2 parents 11; Updated, 2 parents 7; > 2 parents 8;

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