6VWM Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6VWM_001 | 1/1/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_6VWM_002 | 1/1/158:163 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_6VWM_003 | 1/1/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_6VWM_004 | 1/1/207:212 | UNCG Not in a motif group | homologous HL_5J7L_005 HL_03562.2 | |
| HL_6VWM_005 | 1/1/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_6VWM_006 | 1/1/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_6VWM_007 | 1/1/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_6VWM_008 | 1/1/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_6VWM_009 | 1/1/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_6VWM_010 | 1/1/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_6VWM_011 | 1/1/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
| HL_6VWM_012 | 1/1/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_6VWM_013 | 1/1/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_6VWM_014 | 1/1/689:698 | No text annotation Not in a motif group | homologous HL_6CZR_086 HL_12326.1 | |
| HL_6VWM_015 | 1/1/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_6VWM_016 | 1/1/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_6VWM_017 | 1/1/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_6VWM_018 | 1/1/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6VWM_019 | 1/1/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_6VWM_020 | 1/1/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_6VWM_021 | 1/1/1028:1033 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_6VWM_022 | 1/1/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_6VWM_023 | 1/1/1089:1096 | No text annotation Not in a motif group | homologous HL_6CZR_096 HL_71554.2 | |
| HL_6VWM_024 | 1/1/1133:1141 | No text annotation Not in a motif group | ||
| HL_6VWM_025 | 1/1/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.2 | |
| HL_6VWM_026 | 1/1/1265:1270 | No text annotation Not in a motif group | homologous HL_6CZR_099 NA | |
| HL_6VWM_027 | 1/1/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_6VWM_028 | 1/1/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_6VWM_029 | 1/1/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_6VWM_030 | 1/1/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_6VWM_031 | 1/2/59:68 | No text annotation Not in a motif group | homologous HL_7A0S_001 HL_99167.1 | |
| HL_6VWM_032 | 1/2/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_6VWM_033 | 1/2/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_6VWM_034 | 1/2/137:142 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_6VWM_035 | 1/2/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_6VWM_036 | 1/2/194:201 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.2 | |
| HL_6VWM_037 | 1/2/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_6VWM_038 | 1/2/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_6VWM_039 | 1/2/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_6VWM_040 | 1/2/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_6VWM_041 | 1/2/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_6VWM_042 | 1/2/410:417 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.1 | |
| HL_6VWM_043 | 1/2/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_6VWM_044 | 1/2/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_6VWM_045 | 1/2/543:550 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
| HL_6VWM_046 | 1/2/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_89380.2 | |
| HL_6VWM_047 | 1/2/611:617 | No text annotation Not in a motif group | ||
| HL_6VWM_048 | 1/2/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_6VWM_049 | 1/2/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_6VWM_050 | 1/2/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_6VWM_051 | 1/2/744:753 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_6VWM_052 | 1/2/779:785 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_6VWM_053 | 1/2/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_64365.1 | |
| HL_6VWM_054 | 1/2/885:891 | No text annotation Not in a motif group | ||
| HL_6VWM_055 | 1/2/955:962 | No text annotation Not in a motif group | homologous HL_7A0S_026 HL_42097.1 | |
| HL_6VWM_056 | 1/2/978:985 | No text annotation Not in a motif group | homologous HL_4WF9_028 HL_64430.2 | |
| HL_6VWM_057 | 1/2/1172:1177 | No text annotation Not in a motif group | ||
| HL_6VWM_058 | 1/2/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_6VWM_059 | 1/2/1280:1290 | No text annotation Not in a motif group | ||
| HL_6VWM_060 | 1/2/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_6VWM_061 | 1/2/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_6VWM_062 | 1/2/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_6VWM_063 | 1/2/1451:1459 | No text annotation Not in a motif group | ||
| HL_6VWM_064 | 1/2/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_6VWM_065 | 1/2/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_03562.2 | |
| HL_6VWM_066 | 1/2/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_6VWM_067 | 1/2/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_6VWM_068 | 1/2/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_6VWM_069 | 1/2/1691:1696 | UNCG Not in a motif group | geometric HL_4PMI_004 HL_03562.2 | |
| HL_6VWM_070 | 1/2/1728:1731 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_98426.1 | |
| HL_6VWM_071 | 1/2/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_6VWM_072 | 1/2/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_6VWM_073 | 1/2/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_6VWM_074 | 1/2/1868:1873 | No text annotation Not in a motif group | ||
| HL_6VWM_075 | 1/2/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_6VWM_076 | 1/2/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_6VWM_077 | 1/2/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_6VWM_078 | 1/2/2142:2149 | No text annotation Not in a motif group | ||
| HL_6VWM_079 | 1/2/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_6VWM_080 | 1/2/2248:2256 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.2 | |
| HL_6VWM_081 | 1/2/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_6VWM_082 | 1/2/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_6VWM_083 | 1/2/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
| HL_6VWM_084 | 1/2/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_6VWM_085 | 1/2/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_6VWM_086 | 1/2/2404:2413 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_6VWM_087 | 1/2/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_6VWM_088 | 1/2/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_6VWM_089 | 1/2/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_6VWM_090 | 1/2/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_6VWM_091 | 1/2/2658:2663 | No text annotation Not in a motif group | homologous HL_7A0S_063 HL_42097.1 | |
| HL_6VWM_092 | 1/2/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_6VWM_093 | 1/2/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_6VWM_094 | 1/2/2795:2801 | No text annotation Not in a motif group | ||
| HL_6VWM_095 | 1/2/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_6VWM_096 | 1/2/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_6VWM_097 | 1/3/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_87939.1 | |
| HL_6VWM_098 | 1/3/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_6VWM_099 | 1/4/74:79 | No text annotation Not in a motif group | ||
| HL_6VWM_100 | 1/5/13:22 | No text annotation Not in a motif group | ||
| HL_6VWM_101 | 1/5/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4V90_033 HL_53597.2 | |
| HL_6VWM_102 | 1/5/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4YYE_003 HL_22280.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6VWM_001 | 1/1/30:32, 1/1/552:553 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.2 | |
| IL_6VWM_002 | 1/1/44:45, 1/1/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_6VWM_003 | 1/1/47:52, 1/1/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_6VWM_004 | 1/1/54:56, 1/1/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_93353.1 | |
| IL_6VWM_005 | 1/1/63:66, 1/1/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_6VWM_006 | 1/1/67:69, 1/1/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_6VWM_007 | 1/1/70:73, 1/1/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_6VWM_008 | 1/1/75:76, 1/1/93:95 | Major groove intercalation Not in a motif group | geometric IL_5J7L_352 IL_16396.2 | |
| IL_6VWM_009 | 1/1/128:131, 1/1/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_82068.2 | |
| IL_6VWM_010 | 1/1/132:136, 1/1/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_6VWM_011 | 1/1/144:146, 1/1/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_6VWM_012 | 1/1/147:154, 1/1/167:175 | No text annotation Not in a motif group | ||
| IL_6VWM_013 | 1/1/203:206, 1/1/213:214 | No text annotation Not in a motif group | ||
| IL_6VWM_014 | 1/1/242:247, 1/1/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_6VWM_015 | 1/1/249:252, 1/1/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_6VWM_016 | 1/1/292:293, 1/1/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_6VWM_017 | 1/1/367:369, 1/1/392:393 | Single bulged U Not in a motif group | geometric IL_4V9F_074 IL_83039.13 | |
| IL_6VWM_018 | 1/1/371:375, 1/1/389:390 | C-loop Not in a motif group | homologous IL_4LFB_015 IL_75255.1 | |
| IL_6VWM_019 | 1/1/375:376, 1/1/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6VWM_020 | 1/1/409:416, 1/1/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_6VWM_021 | 1/1/440:442, 1/1/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_6VWM_022 | 1/1/446:450, 1/1/483:488 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_88269.3 | |
| IL_6VWM_023 | 1/1/450:454, 1/1/479:483 | No text annotation Not in a motif group | ||
| IL_6VWM_024 | 1/1/454:455, 1/1/477:479 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6VWM_025 | 1/1/504:511, 1/1/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_6VWM_026 | 1/1/515:521, 1/1/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_6VWM_027 | 1/1/569:575, 1/1/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_6VWM_028 | 1/1/580:584, 1/1/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_6VWM_029 | 1/1/594:596, 1/1/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_6VWM_030 | 1/1/597:598, 1/1/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_6VWM_031 | 1/1/605:612, 1/1/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_6VWM_032 | 1/1/654:655, 1/1/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_50694.2 | |
| IL_6VWM_033 | 1/1/659:660, 1/1/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_6VWM_034 | 1/1/662:666, 1/1/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_6VWM_035 | 1/1/673:678, 1/1/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_6VWM_036 | 1/1/684:688, 1/1/699:706 | No text annotation Not in a motif group | ||
| IL_6VWM_037 | 1/1/774:778, 1/1/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_6VWM_038 | 1/1/779:783, 1/1/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_6VWM_039 | 1/1/887:894, 1/1/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_6VWM_040 | 1/1/922:924, 1/1/1392:1395 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 | |
| IL_6VWM_041 | 1/1/925:927, 1/1/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_6VWM_042 | 1/1/953:954, 1/1/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_6VWM_043 | 1/1/993:997, 1/1/1044:1045 | Minor groove platform Not in a motif group | geometric IL_6CZR_151 IL_47078.1 | |
| IL_6VWM_044 | 1/1/998:999, 1/1/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
| IL_6VWM_045 | 1/1/1048:1050, 1/1/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_6VWM_046 | 1/1/1051:1056, 1/1/1204:1207 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_6VWM_047 | 1/1/1057:1058, 1/1/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_6VWM_048 | 1/1/1060:1061, 1/1/1195:1197 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_6VWM_049 | 1/1/1061:1063, 1/1/1193:1195 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_95997.1 | |
| IL_6VWM_050 | 1/1/1124:1128, 1/1/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_6VWM_051 | 1/1/1129:1132, 1/1/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_6VWM_052 | 1/1/1158:1161, 1/1/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_6VWM_053 | 1/1/1247:1253, 1/1/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_6VWM_054 | 1/1/1255:1258, 1/1/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_6VWM_055 | 1/1/1259:1263, 1/1/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_6VWM_056 | 1/1/1303:1308, 1/1/1329:1334 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_6VWM_057 | 1/1/1399:1401, 1/1/1501:1504 | No text annotation Not in a motif group | homologous IL_6CZR_165 NA | |
| IL_6VWM_058 | 1/1/1401:1404, 1/1/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6VWM_059 | 1/1/1405:1409, 1/1/1491:1496 | No text annotation Not in a motif group | ||
| IL_6VWM_060 | 1/1/1412:1414, 1/1/1486:1488 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_95997.1 | |
| IL_6VWM_061 | 1/1/1416:1419, 1/1/1481:1484 | Double sheared Not in a motif group | homologous IL_6CZR_169 IL_09705.9 | |
| IL_6VWM_062 | 1/1/1430:1435, 1/1/1466:1470 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_6VWM_063 | 1/1/1440:1442, 1/1/1460:1461 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
| IL_6VWM_064 | 1/1/1445:1448, 1/1/1455:1457 | Decoding loop related Not in a motif group | geometric IL_2O3X_003 IL_82842.2 | |
| IL_6VWM_065 | 1/2/24:30, 1/2/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5J7L_245 IL_66414.6 | |
| IL_6VWM_066 | 1/2/36:37, 1/2/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_6VWM_067 | 1/2/43:44, 1/2/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_6VWM_068 | 1/2/81:85, 1/2/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_6VWM_069 | 1/2/183:184, 1/2/212:214 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_76488.2 | |
| IL_6VWM_070 | 1/2/188:194, 1/2/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7A0S_006 IL_04346.7 | |
| IL_6VWM_071 | 1/2/239:245, 1/2/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_6VWM_072 | 1/2/269:271, 1/2/366:370 | No text annotation Not in a motif group | ||
| IL_6VWM_073 | 1/2/274:281, 1/2/359:363 | No text annotation Not in a motif group | ||
| IL_6VWM_074 | 1/2/293:295, 1/2/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_6VWM_075 | 1/2/481:484, 1/2/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
| IL_6VWM_076 | 1/2/536:539, 1/2/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_6VWM_077 | 1/2/564:566, 1/2/575:577 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_95997.1 | |
| IL_6VWM_078 | 1/2/606:610, 1/2/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_6VWM_079 | 1/2/672:674, 1/2/806:808 | UU cWW Not in a motif group | geometric IL_4E48_006 IL_95997.1 | |
| IL_6VWM_080 | 1/2/674:678, 1/2/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_5J7L_260 IL_17470.6 | |
| IL_6VWM_081 | 1/2/697:698, 1/2/763:765 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.2 | |
| IL_6VWM_082 | 1/2/702:703, 1/2/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_00225.2 | |
| IL_6VWM_083 | 1/2/703:707, 1/2/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_6VWM_084 | 1/2/738:740, 1/2/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_6VWM_085 | 1/2/775:777, 1/2/787:791 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_6VWM_086 | 1/2/844:847, 1/2/933:934 | Other IL Not in a motif group | geometric IL_5J7L_267 IL_92001.1 | |
| IL_6VWM_087 | 1/2/847:848, 1/2/930:933 | Stack outside cWW Not in a motif group | homologous IL_5J7L_268 IL_37629.1 | |
| IL_6VWM_088 | 1/2/850:851, 1/2/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_6VWM_089 | 1/2/856:862, 1/2/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_6VWM_090 | 1/2/862:863, 1/2/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.2 | |
| IL_6VWM_091 | 1/2/864:868, 1/2/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_6VWM_092 | 1/2/870:872, 1/2/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_034 IL_52767.2 | |
| IL_6VWM_093 | 1/2/874:879, 1/2/898:903 | No text annotation Not in a motif group | ||
| IL_6VWM_094 | 1/2/880:881, 1/2/895:897 | No text annotation Not in a motif group | homologous IL_5J7L_275 NA | |
| IL_6VWM_095 | 1/2/994:996, 1/2/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_6VWM_096 | 1/2/998:1002, 1/2/1153:1157 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_6VWM_097 | 1/2/1004:1011, 1/2/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4WF9_037 IL_15861.7 | |
| IL_6VWM_098 | 1/2/1011:1013, 1/2/1149:1150 | Single bulged U Not in a motif group | geometric IL_4WF9_038 IL_83039.13 | |
| IL_6VWM_099 | 1/2/1018:1024, 1/2/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_6VWM_100 | 1/2/1024:1030, 1/2/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_6VWM_101 | 1/2/1031:1034, 1/2/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7A0S_038 IL_82068.2 | |
| IL_6VWM_102 | 1/2/1038:1041, 1/2/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_6VWM_103 | 1/2/1196:1198, 1/2/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_52767.2 | |
| IL_6VWM_104 | 1/2/1202:1206, 1/2/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6VWM_105 | 1/2/1208:1215, 1/2/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_6VWM_106 | 1/2/1262:1269, 1/2/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_6VWM_107 | 1/2/1310:1313, 1/2/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_290 IL_50694.2 | |
| IL_6VWM_108 | 1/2/1319:1323, 1/2/1331:1333 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_4WF9_050 IL_37712.2 | |
| IL_6VWM_109 | 1/2/1351:1355, 1/2/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_6VWM_110 | 1/2/1357:1361, 1/2/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_6VWM_111 | 1/2/1415:1416, 1/2/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_6VWM_112 | 1/2/1417:1421, 1/2/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_6VWM_113 | 1/2/1432:1435, 1/2/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_6VWM_114 | 1/2/1437:1440, 1/2/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
| IL_6VWM_115 | 1/2/1450:1451, 1/2/1459:1461 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.13 | |
| IL_6VWM_116 | 1/2/1468:1471, 1/2/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_6VWM_117 | 1/2/1474:1478, 1/2/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_6VWM_118 | 1/2/1481:1482, 1/2/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.4 | |
| IL_6VWM_119 | 1/2/1489:1491, 1/2/1499:1500 | Single bulged A Not in a motif group | geometric IL_4V9F_064 IL_37497.2 | |
| IL_6VWM_120 | 1/2/1526:1530, 1/2/1541:1546 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_6VWM_121 | 1/2/1651:1656, 1/2/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_6VWM_122 | 1/2/1663:1665, 1/2/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
| IL_6VWM_123 | 1/2/1666:1669, 1/2/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_6VWM_124 | 1/2/1669:1674, 1/2/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_5TBW_077 IL_82842.2 | |
| IL_6VWM_125 | 1/2/1686:1691, 1/2/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_5J7L_308 IL_65969.2 | |
| IL_6VWM_126 | 1/2/1712:1718, 1/2/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_6VWM_127 | 1/2/1720:1725, 1/2/1735:1740 | No text annotation Not in a motif group | ||
| IL_6VWM_128 | 1/2/1727:1728, 1/2/1731:1733 | No text annotation Not in a motif group | ||
| IL_6VWM_129 | 1/2/1770:1771, 1/2/1980:1982 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_6VWM_130 | 1/2/1798:1804, 1/2/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7A0S_065 IL_17069.3 | |
| IL_6VWM_131 | 1/2/1837:1840, 1/2/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_6VWM_132 | 1/2/1841:1842, 1/2/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_6VWM_133 | 1/2/1846:1850, 1/2/1892:1894 | No text annotation Not in a motif group | ||
| IL_6VWM_134 | 1/2/1865:1867, 1/2/1874:1877 | No text annotation Not in a motif group | ||
| IL_6VWM_135 | 1/2/1933:1934, 1/2/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7A0S_071 IL_59677.2 | |
| IL_6VWM_136 | 1/2/1934:1945, 1/2/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_6VWM_137 | 1/2/2050:2052, 1/2/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_6VWM_138 | 1/2/2054:2056, 1/2/2612:2615 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_6VWM_139 | 1/2/2067:2069, 1/2/2442:2443 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.13 | |
| IL_6VWM_140 | 1/2/2070:2071, 1/2/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_6VWM_141 | 1/2/2081:2083, 1/2/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_6VWM_142 | 1/2/2085:2087, 1/2/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_6VWM_143 | 1/2/2099:2105, 1/2/2184:2190 | No text annotation Not in a motif group | ||
| IL_6VWM_144 | 1/2/2108:2122, 1/2/2176:2181 | No text annotation Not in a motif group | ||
| IL_6VWM_145 | 1/2/2124:2127, 1/2/2161:2174 | No text annotation Not in a motif group | ||
| IL_6VWM_146 | 1/2/2129:2138, 1/2/2153:2159 | No text annotation Not in a motif group | ||
| IL_6VWM_147 | 1/2/2202:2204, 1/2/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_6VWM_148 | 1/2/2297:2299, 1/2/2317:2321 | No text annotation Not in a motif group | homologous IL_5J7L_332 IL_56105.1 | |
| IL_6VWM_149 | 1/2/2350:2353, 1/2/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_6VWM_150 | 1/2/2401:2403, 1/2/2414:2415 | Single bulged U Not in a motif group | homologous IL_4WF9_088 IL_83039.13 | |
| IL_6VWM_151 | 1/2/2454:2455, 1/2/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_6VWM_152 | 1/2/2457:2459, 1/2/2493:2494 | Major groove platform Not in a motif group | geometric IL_7A0S_085 IL_27635.1 | |
| IL_6VWM_153 | 1/2/2459:2461, 1/2/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_6VWM_154 | 1/2/2466:2470, 1/2/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_6VWM_155 | 1/2/2507:2508, 1/2/2580:2582 | Major groove platform Not in a motif group | homologous IL_7A0S_088 IL_76223.2 | |
| IL_6VWM_156 | 1/2/2510:2512, 1/2/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4WF9_095 IL_90933.2 | |
| IL_6VWM_157 | 1/2/2512:2513, 1/2/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_6VWM_158 | 1/2/2522:2523, 1/2/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_6VWM_159 | 1/2/2591:2592, 1/2/2601:2603 | No text annotation Not in a motif group | ||
| IL_6VWM_160 | 1/2/2636:2640, 1/2/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
| IL_6VWM_161 | 1/2/2652:2658, 1/2/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7A0S_094 IL_16458.1 | |
| IL_6VWM_162 | 1/2/2680:2684, 1/2/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_6VWM_163 | 1/2/2687:2691, 1/2/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_6VWM_164 | 1/2/2695:2696, 1/2/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_6VWM_165 | 1/2/2737:2742, 1/2/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7A0S_098 IL_49767.5 | |
| IL_6VWM_166 | 1/2/2806:2811, 1/2/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_6VWM_167 | 1/2/2838:2839, 1/2/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_4WF9_106 IL_16396.2 | |
| IL_6VWM_168 | 1/2/2843:2846, 1/2/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_6VWM_169 | 1/2/2847:2852, 1/2/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 | |
| IL_6VWM_170 | 1/3/17:19, 1/3/64:67 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_6VWM_171 | 1/3/23:28, 1/3/56:60 | No text annotation Not in a motif group | ||
| IL_6VWM_172 | 1/3/28:32, 1/3/50:56 | No text annotation Not in a motif group | ||
| IL_6VWM_173 | 1/3/34:38, 1/3/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_5J7L_358 IL_58103.6 | |
| IL_6VWM_174 | 1/3/71:79, 1/3/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6VWM_001 | 1/1/46:47, 1/1/361:367, 1/1/393:395 | No text annotation Not in a motif group | ||
| J3_6VWM_002 | 1/1/586:588, 1/1/651:654, 1/1/754:755 | No text annotation Not in a motif group | ||
| J3_6VWM_003 | 1/1/672:673, 1/1/717:725, 1/1/732:734 | No text annotation Not in a motif group | ||
| J3_6VWM_004 | 1/1/826:829, 1/1/857:861, 1/1/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_6VWM_005 | 1/1/943:946, 1/1/1235:1237, 1/1/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_6VWM_006 | 1/1/955:962, 1/1/973:984, 1/1/1221:1225 | No text annotation Not in a motif group | ||
| J3_6VWM_007 | 1/1/990:993, 1/1/1045:1047, 1/1/1210:1215 | No text annotation Not in a motif group | homologous J3_5J7L_007 NA | |
| J3_6VWM_008 | 1/1/1003:1006, 1/1/1023:1028, 1/1/1033:1037 | No text annotation Not in a motif group | ||
| J3_6VWM_009 | 1/1/1063:1068, 1/1/1107:1113, 1/1/1187:1193 | No text annotation Not in a motif group | ||
| J3_6VWM_010 | 1/1/1073:1074, 1/1/1083:1087, 1/1/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_6VWM_011 | 1/1/1116:1118, 1/1/1155:1158, 1/1/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_6VWM_012 | 1/1/1237:1241, 1/1/1296:1303, 1/1/1334:1337 | No text annotation Not in a motif group | ||
| J3_6VWM_013 | 1/2/30:31, 1/2/474:481, 1/2/509:510 | No text annotation Not in a motif group | ||
| J3_6VWM_014 | 1/2/56:57, 1/2/70:76, 1/2/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_6VWM_015 | 1/2/683:689, 1/2/773:775, 1/2/791:794 | No text annotation Not in a motif group | ||
| J3_6VWM_016 | 1/2/698:700, 1/2/732:736, 1/2/760:763 | No text annotation Not in a motif group | ||
| J3_6VWM_017 | 1/2/1298:1303, 1/2/1625:1627, 1/2/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_6VWM_018 | 1/2/1306:1309, 1/2/1605:1611, 1/2/1620:1622 | No text annotation Not in a motif group | homologous J3_5J7L_042 NA | |
| J3_6VWM_019 | 1/2/1344:1349, 1/2/1382:1385, 1/2/1402:1403 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_6VWM_020 | 1/2/2091:2093, 1/2/2196:2200, 1/2/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_6VWM_021 | 1/2/2295:2297, 1/2/2321:2323, 1/2/2332:2337 | No text annotation Not in a motif group | ||
| J3_6VWM_022 | 1/2/2517:2520, 1/2/2545:2547, 1/2/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_6VWM_023 | 1/2/2789:2791, 1/2/2805:2806, 1/2/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_6VWM_024 | 1/2/2812:2815, 1/2/2831:2836, 1/2/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_6VWM_025 | 1/3/10:16, 1/3/68:70, 1/3/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA |
Problematic loops
No problematic loops
Coloring options: