Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V6E_0011/AA/12:22No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_4V6E_0021/AA/83:86No text annotation
Not in a motif group
HL_4V6E_0031/AA/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.1
HL_4V6E_0041/AA/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_4V6E_0051/AA/207:212No text annotation
Not in a motif group
HL_4V6E_0061/AA/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_4V6E_0071/AA/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_4V6E_0081/AA/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_4V6E_0091/AA/342:347UNCG
Not in a motif group
homologous
HL_5J7L_009
HL_03562.2
HL_4V6E_0101/AA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_4V6E_0111/AA/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_4V6E_0121/AA/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_4V6E_0131/AA/522:527No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_4V6E_0141/AA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_4V6E_0151/AA/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_4V6E_0161/AA/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_4V6E_0171/AA/786:796No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_4V6E_0181/AA/840:846No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_4V6E_0191/AA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_4V6E_0201/AA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_4V6E_0211/AA/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_4V6E_0221/AA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_4V6E_0231/AA/1028:1033No text annotation
Not in a motif group
HL_4V6E_0241/AA/1076:1081GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.1
HL_4V6E_0251/AA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V6E_0261/AA/1133:1141No text annotation
Not in a motif group
HL_4V6E_0271/AA/1165:1171No text annotation
Not in a motif group
homologous
HL_5J7L_026
HL_90617.2
HL_4V6E_0281/AA/1265:1270GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_42097.1
HL_4V6E_0291/AA/1314:1323No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_89380.2
HL_4V6E_0301/AA/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_4V6E_0311/AA/1449:1454UNCG
Not in a motif group
homologous
HL_4LFB_031
HL_03562.2
HL_4V6E_0321/AA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V6E_0331/BA/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_4V6E_0341/BA/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_4V6E_0351/BA/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_4V6E_0361/BA/136:143No text annotation
Not in a motif group
HL_4V6E_0371/BA/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_4V6E_0381/BA/194:201No text annotation
Not in a motif group
geometric
HL_5J7L_139
HL_06192.2
HL_4V6E_0391/BA/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_4V6E_0401/BA/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_4V6E_0411/BA/305:312No text annotation
Not in a motif group
homologous
HL_7A0S_010
HL_89380.2
HL_4V6E_0421/BA/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_4V6E_0431/BA/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_4V6E_0441/BA/381:393No text annotation
Not in a motif group
HL_4V6E_0451/BA/410:417No text annotation
Not in a motif group
homologous
HL_4WF9_014
HL_96598.1
HL_4V6E_0461/BA/462:467No text annotation
Not in a motif group
homologous
HL_7A0S_015
HL_42097.1
HL_4V6E_0471/BA/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.1
HL_4V6E_0481/BA/543:550No text annotation
Not in a motif group
homologous
HL_7RQB_017
NA
HL_4V6E_0491/BA/566:575T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5J7L_150
HL_89380.2
HL_4V6E_0501/BA/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_4V6E_0511/BA/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_4V6E_0521/BA/641:647No text annotation
Not in a motif group
homologous
HL_5J7L_153
HL_77805.2
HL_4V6E_0531/BA/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_4V6E_0541/BA/744:753No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_4V6E_0551/BA/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_27930.1
HL_4V6E_0561/BA/826:831No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_64365.1
HL_4V6E_0581/BA/955:962GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_42097.1
HL_4V6E_0591/BA/978:985No text annotation
Not in a motif group
homologous
HL_4WF9_028
HL_64430.2
HL_4V6E_0601/BA/1064:1074No text annotation
Not in a motif group
HL_4V6E_0611/BA/1092:1099No text annotation
Not in a motif group
homologous
HL_6PRV_002
HL_84085.2
HL_4V6E_0621/BA/1172:1177No text annotation
Not in a motif group
geometric
HL_2Y8Y_001
HL_20062.1
HL_4V6E_0631/BA/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_4V6E_0641/BA/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_4V6E_0651/BA/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_4V6E_0661/BA/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_4V6E_0671/BA/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_4V6E_0681/BA/1451:1459No text annotation
Not in a motif group
homologous
HL_5J7L_169
HL_53837.1
HL_4V6E_0691/BA/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_4V6E_0701/BA/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_4V6E_0711/BA/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_4V6E_0721/BA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V6E_0731/BA/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_4V6E_0741/BA/1691:1696UNCG
Not in a motif group
homologous
HL_5J7L_175
HL_03562.2
HL_4V6E_0751/BA/1728:1731No text annotation
Not in a motif group
homologous
HL_5J7L_176
HL_98426.1
HL_4V6E_0761/BA/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_76539.2
HL_4V6E_0771/BA/1777:1787No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_4V6E_0781/BA/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_4V6E_0791/BA/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_42097.1
HL_4V6E_0801/BA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V6E_0811/BA/1949:1957No text annotation
Not in a motif group
homologous
HL_7A0S_048
HL_51824.1
HL_4V6E_0821/BA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4V6E_0841/BA/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_4V6E_0851/BA/2248:2256No text annotation
Not in a motif group
homologous
HL_7A0S_052
HL_53171.2
HL_4V6E_0861/BA/2264:2276No text annotation
Not in a motif group
homologous
HL_5J7L_187
HL_19870.6
HL_4V6E_0871/BA/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_4V6E_0881/BA/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_4V6E_0891/BA/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_4V6E_0901/BA/2374:2379GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_42097.1
HL_4V6E_0911/BA/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_30784.2
HL_4V6E_0921/BA/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_4V6E_0931/BA/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_4V6E_0941/BA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V6E_0951/BA/2594:2599GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_42097.1
HL_4V6E_0961/BA/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_42097.1
HL_4V6E_0971/BA/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_4V6E_0981/BA/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_4V6E_0991/BA/2796:2799No text annotation
Not in a motif group
geometric
HL_5TBW_068
HL_98426.1
HL_4V6E_1001/BA/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_4V6E_1011/BA/2856:2861Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_42097.1
HL_4V6E_1021/BB/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_4V6E_1031/BB/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2
HL_4V6E_1041/CA/12:22No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_4V6E_1051/CA/83:86No text annotation
Not in a motif group
HL_4V6E_1061/CA/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_4V6E_1071/CA/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_4V6E_1081/CA/207:212UNCG
Not in a motif group
homologous
HL_5J7L_005
HL_03562.2
HL_4V6E_1091/CA/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_4V6E_1101/CA/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_4V6E_1111/CA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4V6E_1121/CA/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_4V6E_1131/CA/379:384No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_4V6E_1141/CA/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_4V6E_1151/CA/462:470No text annotation
Not in a motif group
HL_4V6E_1161/CA/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_4V6E_1171/CA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_4V6E_1181/CA/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_4V6E_1191/CA/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_4V6E_1201/CA/786:796No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_4V6E_1211/CA/840:846No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_4V6E_1221/CA/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_42097.1
HL_4V6E_1231/CA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_4V6E_1241/CA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V6E_1251/CA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_4V6E_1261/CA/1028:1033No text annotation
Not in a motif group
geometric
HL_4YAZ_004
HL_56691.2
HL_4V6E_1271/CA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_4V6E_1281/CA/1089:1096No text annotation
Not in a motif group
homologous
HL_5J7L_024
HL_71554.2
HL_4V6E_1291/CA/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_4V6E_1301/CA/1165:1171No text annotation
Not in a motif group
homologous
HL_5J7L_026
HL_90617.2
HL_4V6E_1311/CA/1265:1270No text annotation
Not in a motif group
homologous
HL_6CZR_099
NA
HL_4V6E_1321/CA/1314:1323No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_89380.2
HL_4V6E_1331/CA/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_4V6E_1341/CA/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_4V6E_1351/CA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V6E_1361/CV/31:39No text annotation
Not in a motif group
geometric
HL_7U2I_104
HL_53597.2
HL_4V6E_1371/DA/59:68No text annotation
Not in a motif group
geometric
HL_6N5P_003
HL_96598.1
HL_4V6E_1381/DA/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_4V6E_1391/DA/123:128No text annotation
Not in a motif group
homologous
HL_5J7L_136
HL_75407.1
HL_4V6E_1401/DA/137:142No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_4V6E_1411/DA/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_4V6E_1421/DA/194:201No text annotation
Not in a motif group
homologous
HL_7RQB_006
HL_06192.2
HL_4V6E_1431/DA/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_4V6E_1441/DA/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_4V6E_1451/DA/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_4V6E_1461/DA/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_4V6E_1471/DA/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.8
HL_4V6E_1481/DA/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_4V6E_1491/DA/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_4V6E_1501/DA/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_4V6E_1511/DA/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.1
HL_4V6E_1521/DA/543:550No text annotation
Not in a motif group
homologous
HL_7RQB_017
NA
HL_4V6E_1531/DA/566:575T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_150
HL_89380.2
HL_4V6E_1541/DA/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_4V6E_1551/DA/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_4V6E_1561/DA/641:647GNRA with one bulged base
Not in a motif group
homologous
HL_4WF9_021
HL_42097.1
HL_4V6E_1571/DA/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_4V6E_1581/DA/744:753No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_4V6E_1591/DA/779:785No text annotation
Not in a motif group
HL_4V6E_1601/DA/826:831No text annotation
Not in a motif group
homologous
HL_7A0S_024
HL_64365.1
HL_4V6E_1621/DA/955:962GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_42097.1
HL_4V6E_1631/DA/977:986No text annotation
Not in a motif group
geometric
HL_3AL0_001
HL_25462.2
HL_4V6E_1641/DA/1064:1074No text annotation
Not in a motif group
homologous
HL_5J7L_161
HL_07145.1
HL_4V6E_1651/DA/1092:1099No text annotation
Not in a motif group
homologous
HL_6PRV_002
HL_84085.2
HL_4V6E_1661/DA/1172:1177No text annotation
Not in a motif group
HL_4V6E_1671/DA/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_4V6E_1681/DA/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_4V6E_1691/DA/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_4V6E_1701/DA/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_4V6E_1711/DA/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_4V6E_1721/DA/1449:1462No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_4V6E_1731/DA/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_4V6E_1741/DA/1533:1538No text annotation
Not in a motif group
HL_4V6E_1751/DA/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_4V6E_1761/DA/1612:1619No text annotation
Not in a motif group
homologous
HL_7A0S_040
HL_64430.2
HL_4V6E_1771/DA/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_4V6E_1781/DA/1691:1696No text annotation
Not in a motif group
geometric
HL_7A0S_042
HL_03562.2
HL_4V6E_1791/DA/1728:1731No text annotation
Not in a motif group
HL_4V6E_1801/DA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4V6E_1811/DA/1777:1787No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_4V6E_1821/DA/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_4V6E_1831/DA/1868:1873Other HL
Not in a motif group
geometric
HL_2CZJ_007
HL_53845.1
HL_4V6E_1841/DA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V6E_1851/DA/1949:1957No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_4V6E_1861/DA/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_4V6E_1871/DA/2142:2149No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_4V6E_1881/DA/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_4V6E_1891/DA/2248:2256No text annotation
Not in a motif group
homologous
HL_5J7L_186
NA
HL_4V6E_1901/DA/2264:2276No text annotation
Not in a motif group
homologous
HL_7A0S_053
HL_19870.6
HL_4V6E_1911/DA/2303:2313No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_4V6E_1921/DA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_4V6E_1931/DA/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_4V6E_1941/DA/2374:2379GNRA
Not in a motif group
homologous
HL_4WF9_054
HL_42097.1
HL_4V6E_1951/DA/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_30784.2
HL_4V6E_1961/DA/2471:2479No text annotation
Not in a motif group
homologous
HL_7A0S_059
HL_06192.2
HL_4V6E_1971/DA/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_4V6E_1981/DA/2551:2557No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_4V6E_1991/DA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_4V6E_2001/DA/2658:2663No text annotation
Not in a motif group
geometric
HL_3OXE_002
HL_42097.1
HL_4V6E_2011/DA/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_4V6E_2021/DA/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_4V6E_2031/DA/2795:2801No text annotation
Not in a motif group
HL_4V6E_2041/DA/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_4V6E_2051/DA/2856:2861No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_42097.1
HL_4V6E_2061/DB/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_4V6E_2071/DB/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2

Problematic loops

#loop idProblemSequence
HL_4V6E_057No text annotation
HL_4V6E_083No text annotation
HL_4V6E_161No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V6E_0011/AA/30:32,
1/AA/552:553
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_00225.2
IL_4V6E_0021/AA/44:45,
1/AA/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_4V6E_0031/AA/47:52,
1/AA/359:361
No text annotation
Not in a motif group
geometric
IL_5J7L_003
IL_11178.1
IL_4V6E_0041/AA/54:56,
1/AA/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_4V6E_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_4V6E_0061/AA/67:69,
1/AA/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_4V6E_0071/AA/70:73,
1/AA/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_4V6E_0081/AA/75:76,
1/AA/93:95
Single bulged G
Not in a motif group
geometric
IL_5DEA_002
IL_00225.2
IL_4V6E_0091/AA/128:131,
1/AA/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_4V6E_0101/AA/132:136,
1/AA/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_4V6E_0111/AA/147:153,
1/AA/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_4V6E_0121/AA/203:206,
1/AA/213:214
No text annotation
Not in a motif group
IL_4V6E_0131/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_4V6E_0141/AA/249:252,
1/AA/274:275
No text annotation
Not in a motif group
homologous
IL_5J7L_015
IL_48100.2
IL_4V6E_0151/AA/292:293,
1/AA/304:308
C-loop
Not in a motif group
homologous
IL_5J7L_016
IL_37712.2
IL_4V6E_0161/AA/367:369,
1/AA/392:393
Single bulged U
Not in a motif group
geometric
IL_5J7L_017
IL_83039.13
IL_4V6E_0171/AA/370:375,
1/AA/389:391
No text annotation
Not in a motif group
IL_4V6E_0181/AA/375:376,
1/AA/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.2
IL_4V6E_0191/AA/409:416,
1/AA/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_4V6E_0201/AA/440:442,
1/AA/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_4V6E_0211/AA/446:450,
1/AA/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_4V6E_0221/AA/450:455,
1/AA/477:483
No text annotation
Not in a motif group
IL_4V6E_0231/AA/458:459,
1/AA/472:474
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_4V6E_0241/AA/460:462,
1/AA/470:471
Single bulged A
Not in a motif group
geometric
IL_5J7L_312
IL_37497.2
IL_4V6E_0251/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_4V6E_0261/AA/515:521,
1/AA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V6E_0271/AA/569:575,
1/AA/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_4V6E_0281/AA/580:584,
1/AA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_4V6E_0291/AA/594:596,
1/AA/644:645
No text annotation
Not in a motif group
IL_4V6E_0301/AA/597:598,
1/AA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_4V6E_0311/AA/605:612,
1/AA/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_4V6E_0321/AA/658:659,
1/AA/746:748
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_4V6E_0331/AA/662:666,
1/AA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_4V6E_0341/AA/673:678,
1/AA/712:717
No text annotation
Not in a motif group
geometric
IL_4LFB_030
IL_04668.1
IL_4V6E_0351/AA/684:688,
1/AA/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_4V6E_0361/AA/774:778,
1/AA/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_4V6E_0371/AA/779:783,
1/AA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_4V6E_0381/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_4V6E_0391/AA/922:923,
1/AA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.2
IL_4V6E_0401/AA/925:927,
1/AA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.2
IL_4V6E_0411/AA/933:935,
1/AA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_4V6E_0421/AA/953:954,
1/AA/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_4V6E_0431/AA/993:997,
1/AA/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_5J7L_043
IL_47078.1
IL_4V6E_0441/AA/998:999,
1/AA/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_4V6E_0451/AA/1048:1050,
1/AA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_4V6E_0461/AA/1052:1056,
1/AA/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_4V6E_0471/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_4V6E_0481/AA/1060:1061,
1/AA/1195:1197
Single bulged A
Not in a motif group
homologous
IL_5J7L_049
IL_37497.2
IL_4V6E_0491/AA/1061:1063,
1/AA/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_95997.1
IL_4V6E_0501/AA/1124:1128,
1/AA/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_4V6E_0511/AA/1129:1132,
1/AA/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_4V6E_0521/AA/1158:1161,
1/AA/1175:1181
No text annotation
Not in a motif group
geometric
IL_4LFB_050
IL_42032.1
IL_4V6E_0531/AA/1247:1253,
1/AA/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_4V6E_0541/AA/1255:1258,
1/AA/1277:1282
No text annotation
Not in a motif group
homologous
IL_5J7L_055
IL_75461.4
IL_4V6E_0551/AA/1259:1263,
1/AA/1272:1276
Triple sheared
Not in a motif group
geometric
IL_5J7L_274
IL_56467.8
IL_4V6E_0561/AA/1303:1308,
1/AA/1329:1334
No text annotation
Not in a motif group
geometric
IL_5J7L_057
IL_19954.2
IL_4V6E_0571/AA/1399:1401,
1/AA/1501:1504
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_4V6E_0581/AA/1401:1404,
1/AA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4V6E_0591/AA/1405:1407,
1/AA/1494:1496
No text annotation
Not in a motif group
geometric
IL_5MWI_007
IL_95997.1
IL_4V6E_0601/AA/1407:1409,
1/AA/1491:1494
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_4V6E_0611/AA/1412:1414,
1/AA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_4V6E_0621/AA/1416:1419,
1/AA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_4V6E_0631/AA/1430:1435,
1/AA/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_4V6E_0641/AA/1440:1442,
1/AA/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_4V6E_0651/AA/1445:1448,
1/AA/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5
IL_4V6E_0661/BA/24:30,
1/BA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_5J7L_245
IL_66414.6
IL_4V6E_0671/BA/36:37,
1/BA/442:444
Single bulged A
Not in a motif group
homologous
IL_5J7L_246
IL_37497.2
IL_4V6E_0681/BA/43:44,
1/BA/434:436
Minor groove platform
Not in a motif group
homologous
IL_7RQB_003
IL_42622.2
IL_4V6E_0691/BA/81:85,
1/BA/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_4V6E_0701/BA/183:184,
1/BA/212:214
Single stack bend
Not in a motif group
homologous
IL_5J7L_249
IL_76488.2
IL_4V6E_0711/BA/188:194,
1/BA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_250
IL_04346.7
IL_4V6E_0721/BA/239:245,
1/BA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_4V6E_0731/BA/269:271,
1/BA/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_4V6E_0741/BA/274:281,
1/BA/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_4V6E_0751/BA/293:295,
1/BA/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_4V6E_0761/BA/481:484,
1/BA/496:509
No text annotation
Not in a motif group
geometric
IL_5J7L_255
IL_60992.6
IL_4V6E_0771/BA/536:539,
1/BA/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_4V6E_0781/BA/564:566,
1/BA/575:577
No text annotation
Not in a motif group
homologous
IL_4WF9_017
IL_95997.1
IL_4V6E_0791/BA/606:610,
1/BA/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_4V6E_0801/BA/672:674,
1/BA/806:808
No text annotation
Not in a motif group
homologous
IL_7RQB_017
IL_95997.1
IL_4V6E_0811/BA/674:678,
1/BA/799:806
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_5J7L_260
IL_17470.6
IL_4V6E_0821/BA/697:698,
1/BA/763:765
Single bulged A
Not in a motif group
geometric
IL_4WF9_022
IL_37497.2
IL_4V6E_0831/BA/702:703,
1/BA/728:730
Single bulged G
Not in a motif group
homologous
IL_5J7L_262
IL_00225.2
IL_4V6E_0841/BA/703:707,
1/BA/724:728
Triple sheared
Not in a motif group
geometric
IL_5J7L_263
IL_56467.8
IL_4V6E_0851/BA/738:740,
1/BA/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.1
IL_4V6E_0861/BA/775:777,
1/BA/787:791
No text annotation
Not in a motif group
IL_4V6E_0871/BA/844:847,
1/BA/933:934
Other IL
Not in a motif group
homologous
IL_5J7L_267
IL_92001.1
IL_4V6E_0881/BA/847:848,
1/BA/930:933
Stack outside cWW
Not in a motif group
geometric
IL_5J7L_268
IL_37629.1
IL_4V6E_0891/BA/850:851,
1/BA/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_4V6E_0901/BA/856:858,
1/BA/919:921
No text annotation
Not in a motif group
geometric
IL_2R8S_001
IL_95997.1
IL_4V6E_0911/BA/858:862,
1/BA/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_7RQB_027
IL_38862.1
IL_4V6E_0921/BA/862:863,
1/BA/913:915
Single bulged G
Not in a motif group
geometric
IL_5J7L_271
IL_00225.2
IL_4V6E_0931/BA/864:868,
1/BA/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_4V6E_0941/BA/870:872,
1/BA/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_4V6E_0951/BA/875:879,
1/BA/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_4V6E_0961/BA/880:881,
1/BA/895:897
Single bulged A
Not in a motif group
homologous
IL_7RQB_033
IL_37497.2
IL_4V6E_0971/BA/994:996,
1/BA/1159:1160
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_4V6E_0981/BA/998:1002,
1/BA/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_5J7L_277
IL_89002.2
IL_4V6E_0991/BA/1004:1011,
1/BA/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.7
IL_4V6E_1001/BA/1011:1013,
1/BA/1149:1150
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.13
IL_4V6E_1011/BA/1017:1024,
1/BA/1140:1145
No text annotation
Not in a motif group
IL_4V6E_1021/BA/1024:1030,
1/BA/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_4V6E_1031/BA/1031:1034,
1/BA/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_282
IL_82068.2
IL_4V6E_1041/BA/1038:1041,
1/BA/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_4V6E_1061/BA/1059:1062,
1/BA/1076:1079
No text annotation
Not in a motif group
homologous
IL_6PRV_001
IL_23544.2
IL_4V6E_1071/BA/1087:1090,
1/BA/1101:1102
Multiple bulged bases
Not in a motif group
geometric
IL_6IV9_001
IL_16396.2
IL_4V6E_1081/BA/1196:1198,
1/BA/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_5J7L_286
IL_52767.2
IL_4V6E_1091/BA/1202:1206,
1/BA/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_4V6E_1101/BA/1208:1215,
1/BA/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_4V6E_1111/BA/1262:1269,
1/BA/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_4V6E_1121/BA/1319:1323,
1/BA/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_4V6E_1131/BA/1351:1355,
1/BA/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_4V6E_1141/BA/1357:1361,
1/BA/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_4V6E_1151/BA/1415:1416,
1/BA/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_4V6E_1161/BA/1417:1421,
1/BA/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_4V6E_1171/BA/1432:1435,
1/BA/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_4V6E_1181/BA/1437:1440,
1/BA/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_4V6E_1191/BA/1450:1451,
1/BA/1459:1461
Single bulged U
Not in a motif group
geometric
IL_5J7L_298
IL_83039.13
IL_4V6E_1201/BA/1468:1471,
1/BA/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_4V6E_1211/BA/1474:1478,
1/BA/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_4V6E_1221/BA/1481:1482,
1/BA/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_4V6E_1231/BA/1489:1491,
1/BA/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_4V6E_1241/BA/1526:1529,
1/BA/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_4V6E_1251/BA/1651:1656,
1/BA/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_4V6E_1261/BA/1663:1665,
1/BA/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_4V6E_1271/BA/1666:1669,
1/BA/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_50694.2
IL_4V6E_1281/BA/1669:1674,
1/BA/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_5J7L_307
IL_82842.2
IL_4V6E_1291/BA/1686:1691,
1/BA/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_5J7L_308
IL_65969.2
IL_4V6E_1301/BA/1712:1718,
1/BA/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_4V6E_1311/BA/1720:1724,
1/BA/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_4V6E_1321/BA/1727:1728,
1/BA/1731:1733
Single bulged C
Not in a motif group
geometric
IL_5J7L_311
IL_61258.12
IL_4V6E_1331/BA/1770:1771,
1/BA/1980:1982
Single bulged A
Not in a motif group
homologous
IL_5J7L_312
IL_37497.2
IL_4V6E_1341/BA/1798:1804,
1/BA/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_4V6E_1351/BA/1837:1840,
1/BA/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_4V6E_1361/BA/1841:1842,
1/BA/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_4V6E_1371/BA/1846:1849,
1/BA/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.6
IL_4V6E_1381/BA/1864:1867,
1/BA/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_4V6E_1391/BA/1933:1934,
1/BA/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_318
IL_59677.2
IL_4V6E_1401/BA/1934:1945,
1/BA/1961:1964
No text annotation
Not in a motif group
homologous
IL_4WF9_077
IL_81589.2
IL_4V6E_1411/BA/2050:2052,
1/BA/2617:2618
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.1
IL_4V6E_1421/BA/2054:2056,
1/BA/2612:2615
No text annotation
Not in a motif group
IL_4V6E_1431/BA/2067:2069,
1/BA/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.13
IL_4V6E_1441/BA/2070:2071,
1/BA/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_4WF9_081
IL_42622.2
IL_4V6E_1451/BA/2081:2083,
1/BA/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_4V6E_1461/BA/2085:2087,
1/BA/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_4V6E_1471/BA/2103:2105,
1/BA/2184:2186
No text annotation
Not in a motif group
geometric
IL_1YZ9_001
IL_95997.1
IL_4V6E_1491/BA/2202:2204,
1/BA/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_4V6E_1501/BA/2350:2353,
1/BA/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_4V6E_1511/BA/2401:2403,
1/BA/2414:2415
No text annotation
Not in a motif group
IL_4V6E_1521/BA/2453:2454,
1/BA/2498:2500
Single stack bend
Not in a motif group
homologous
IL_4WF9_089
IL_76488.2
IL_4V6E_1531/BA/2454:2455,
1/BA/2496:2498
Major groove platform
Not in a motif group
geometric
IL_7RQB_092
IL_27635.1
IL_4V6E_1541/BA/2457:2459,
1/BA/2493:2494
Major groove platform
Not in a motif group
homologous
IL_4WF9_091
IL_27635.1
IL_4V6E_1551/BA/2459:2461,
1/BA/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_5J7L_337
IL_92788.2
IL_4V6E_1561/BA/2466:2470,
1/BA/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_4V6E_1571/BA/2507:2508,
1/BA/2580:2582
Major groove platform
Not in a motif group
homologous
IL_4WF9_094
IL_76223.2
IL_4V6E_1581/BA/2510:2512,
1/BA/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_340
IL_90933.2
IL_4V6E_1591/BA/2512:2513,
1/BA/2571:2574
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_4V6E_1601/BA/2522:2523,
1/BA/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_4V6E_1611/BA/2591:2592,
1/BA/2601:2603
Single bulged A
Not in a motif group
homologous
IL_5J7L_344
IL_37497.2
IL_4V6E_1621/BA/2636:2640,
1/BA/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_4V6E_1631/BA/2652:2658,
1/BA/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_5J7L_346
IL_16458.1
IL_4V6E_1641/BA/2680:2684,
1/BA/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_4V6E_1651/BA/2687:2691,
1/BA/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_4V6E_1661/BA/2695:2696,
1/BA/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_4V6E_1671/BA/2737:2742,
1/BA/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_4V6E_1681/BA/2795:2796,
1/BA/2799:2801
Single bulged A
Not in a motif group
geometric
IL_7RQB_059
IL_37497.2
IL_4V6E_1691/BA/2806:2811,
1/BA/2889:2892
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_49460.2
IL_4V6E_1701/BA/2838:2839,
1/BA/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_16396.2
IL_4V6E_1711/BA/2843:2846,
1/BA/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_4V6E_1721/BA/2847:2852,
1/BA/2865:2869
No text annotation
Not in a motif group
homologous
IL_7RQB_110
IL_83162.5
IL_4V6E_1731/BB/17:18,
1/BB/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.2
IL_4V6E_1741/BB/23:28,
1/BB/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_4V6E_1751/BB/30:31,
1/BB/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_357
IL_09061.6
IL_4V6E_1761/BB/34:38,
1/BB/44:48
Symmetric double minor groove platform
Not in a motif group
geometric
IL_5J7L_358
IL_58103.6
IL_4V6E_1771/BB/71:79,
1/BB/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3
IL_4V6E_1781/CA/30:32,
1/CA/552:553
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_00225.2
IL_4V6E_1791/CA/44:45,
1/CA/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_4V6E_1801/CA/47:52,
1/CA/359:361
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_11178.1
IL_4V6E_1811/CA/54:56,
1/CA/356:357
Minor groove platform
Not in a motif group
homologous
IL_5J7L_004
IL_93353.1
IL_4V6E_1821/CA/63:66,
1/CA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_4V6E_1831/CA/67:69,
1/CA/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_4V6E_1841/CA/70:73,
1/CA/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_4V6E_1851/CA/75:76,
1/CA/93:95
Single bulged G
Not in a motif group
geometric
IL_5DEA_002
IL_00225.2
IL_4V6E_1861/CA/79:81,
1/CA/88:90
No text annotation
Not in a motif group
IL_4V6E_1871/CA/128:131,
1/CA/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_4V6E_1881/CA/132:136,
1/CA/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_4V6E_1891/CA/144:146,
1/CA/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_4V6E_1901/CA/147:153,
1/CA/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_4V6E_1911/CA/203:206,
1/CA/213:214
Minor groove platform
Not in a motif group
geometric
IL_3IWN_005
IL_15052.1
IL_4V6E_1921/CA/242:247,
1/CA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_4V6E_1931/CA/249:253,
1/CA/273:275
No text annotation
Not in a motif group
homologous
IL_6CZR_124
IL_38684.1
IL_4V6E_1941/CA/292:293,
1/CA/304:308
C-loop
Not in a motif group
homologous
IL_6CZR_125
IL_37712.2
IL_4V6E_1951/CA/367:369,
1/CA/392:393
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.13
IL_4V6E_1961/CA/371:375,
1/CA/389:390
C-loop
Not in a motif group
homologous
IL_4LFB_015
IL_75255.1
IL_4V6E_1971/CA/375:376,
1/CA/387:389
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_4V6E_1981/CA/409:416,
1/CA/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_4V6E_1991/CA/440:442,
1/CA/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_4V6E_2001/CA/446:450,
1/CA/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_4V6E_2011/CA/450:455,
1/CA/477:483
No text annotation
Not in a motif group
IL_4V6E_2021/CA/458:459,
1/CA/472:474
No text annotation
Not in a motif group
IL_4V6E_2031/CA/460:462,
1/CA/470:471
Single bulged A
Not in a motif group
geometric
IL_4V9F_002
IL_37497.2
IL_4V6E_2041/CA/504:511,
1/CA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_4V6E_2051/CA/515:521,
1/CA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V6E_2061/CA/569:575,
1/CA/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_4V6E_2071/CA/580:584,
1/CA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_4V6E_2081/CA/594:596,
1/CA/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_4V6E_2091/CA/597:598,
1/CA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_4V6E_2101/CA/605:612,
1/CA/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_4V6E_2111/CA/658:659,
1/CA/746:748
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_4V6E_2121/CA/662:666,
1/CA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_4V6E_2131/CA/673:678,
1/CA/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_4V6E_2141/CA/684:688,
1/CA/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_4V6E_2151/CA/774:778,
1/CA/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_4V6E_2161/CA/779:783,
1/CA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_4V6E_2171/CA/887:894,
1/CA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_4V6E_2181/CA/922:923,
1/CA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.2
IL_4V6E_2191/CA/925:927,
1/CA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_5J7L_040
IL_00225.2
IL_4V6E_2201/CA/933:935,
1/CA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_4V6E_2211/CA/953:955,
1/CA/1225:1228
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5ML7_010
IL_82068.2
IL_4V6E_2221/CA/993:997,
1/CA/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_4LFB_039
IL_47078.1
IL_4V6E_2231/CA/998:999,
1/CA/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_4V6E_2241/CA/1048:1050,
1/CA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_4V6E_2251/CA/1052:1056,
1/CA/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_4V6E_2261/CA/1057:1058,
1/CA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_4V6E_2271/CA/1060:1061,
1/CA/1195:1197
Single bulged A
Not in a motif group
geometric
IL_5J7L_049
IL_37497.2
IL_4V6E_2281/CA/1061:1063,
1/CA/1193:1195
No text annotation
Not in a motif group
homologous
IL_4LFB_047
IL_95997.1
IL_4V6E_2291/CA/1124:1128,
1/CA/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_4V6E_2301/CA/1129:1132,
1/CA/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_4V6E_2311/CA/1158:1161,
1/CA/1175:1181
No text annotation
Not in a motif group
homologous
IL_5J7L_053
IL_42032.1
IL_4V6E_2321/CA/1247:1253,
1/CA/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_4V6E_2331/CA/1255:1258,
1/CA/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_4V6E_2341/CA/1259:1263,
1/CA/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_4V6E_2351/CA/1303:1308,
1/CA/1329:1334
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_4V6E_2361/CA/1399:1401,
1/CA/1501:1504
No text annotation
Not in a motif group
geometric
IL_5J7L_058
IL_36143.3
IL_4V6E_2371/CA/1401:1404,
1/CA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4V6E_2381/CA/1405:1407,
1/CA/1494:1496
No text annotation
Not in a motif group
geometric
IL_4V9F_023
IL_95997.1
IL_4V6E_2391/CA/1407:1409,
1/CA/1491:1494
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_4V6E_2401/CA/1412:1414,
1/CA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_4V6E_2411/CA/1416:1419,
1/CA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_4V6E_2421/CA/1430:1435,
1/CA/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_4V6E_2431/CA/1440:1442,
1/CA/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_4V6E_2441/CA/1445:1448,
1/CA/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5
IL_4V6E_2451/DA/24:30,
1/DA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_7RQB_001
IL_66414.6
IL_4V6E_2461/DA/36:37,
1/DA/442:444
Single bulged A
Not in a motif group
homologous
IL_5J7L_246
IL_37497.2
IL_4V6E_2471/DA/43:44,
1/DA/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_4V6E_2481/DA/81:85,
1/DA/97:105
No text annotation
Not in a motif group
IL_4V6E_2491/DA/183:184,
1/DA/212:214
Single stack bend
Not in a motif group
homologous
IL_5J7L_249
IL_76488.2
IL_4V6E_2501/DA/188:194,
1/DA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7RQB_006
IL_04346.7
IL_4V6E_2511/DA/239:245,
1/DA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_4V6E_2521/DA/269:271,
1/DA/366:370
No text annotation
Not in a motif group
IL_4V6E_2531/DA/274:281,
1/DA/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_4V6E_2541/DA/293:295,
1/DA/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_4V6E_2551/DA/481:484,
1/DA/496:509
No text annotation
Not in a motif group
homologous
IL_5J7L_255
IL_60992.6
IL_4V6E_2561/DA/536:539,
1/DA/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_4V6E_2571/DA/564:566,
1/DA/575:577
No text annotation
Not in a motif group
geometric
IL_7RQB_015
IL_95997.1
IL_4V6E_2581/DA/606:610,
1/DA/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_4V6E_2591/DA/672:674,
1/DA/806:808
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_95997.1
IL_4V6E_2601/DA/674:678,
1/DA/799:806
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_5J7L_260
IL_17470.6
IL_4V6E_2611/DA/697:698,
1/DA/763:765
Single bulged A
Not in a motif group
homologous
IL_5J7L_261
IL_37497.2
IL_4V6E_2621/DA/702:703,
1/DA/728:730
Single bulged G
Not in a motif group
homologous
IL_4WF9_023
IL_00225.2
IL_4V6E_2631/DA/703:707,
1/DA/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_4V6E_2641/DA/738:741,
1/DA/756:758
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7A0S_019
IL_05564.2
IL_4V6E_2651/DA/775:777,
1/DA/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_265
IL_90991.6
IL_4V6E_2661/DA/844:848,
1/DA/930:934
No text annotation
Not in a motif group
IL_4V6E_2671/DA/850:851,
1/DA/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_4V6E_2681/DA/856:858,
1/DA/919:921
No text annotation
Not in a motif group
geometric
IL_5TBW_068
IL_95997.1
IL_4V6E_2691/DA/858:862,
1/DA/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_4V9F_033
IL_38862.1
IL_4V6E_2701/DA/862:863,
1/DA/913:915
Single bulged G
Not in a motif group
geometric
IL_5J7L_271
IL_00225.2
IL_4V6E_2711/DA/864:868,
1/DA/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_4V6E_2721/DA/870:872,
1/DA/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_4V6E_2731/DA/994:996,
1/DA/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_4V6E_2741/DA/998:1002,
1/DA/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_5J7L_277
IL_89002.2
IL_4V6E_2751/DA/1004:1011,
1/DA/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.7
IL_4V6E_2761/DA/1011:1013,
1/DA/1149:1150
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.13
IL_4V6E_2771/DA/1018:1024,
1/DA/1140:1144
No text annotation
Not in a motif group
homologous
IL_4WF9_039
IL_57188.3
IL_4V6E_2781/DA/1024:1030,
1/DA/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_4V6E_2791/DA/1031:1034,
1/DA/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_282
IL_82068.2
IL_4V6E_2801/DA/1038:1041,
1/DA/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_4V6E_2811/DA/1043:1051,
1/DA/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_4V6E_2821/DA/1059:1062,
1/DA/1076:1079
No text annotation
Not in a motif group
homologous
IL_5J7L_285
IL_23544.2
IL_4V6E_2831/DA/1087:1090,
1/DA/1101:1102
Major groove platform
Not in a motif group
geometric
IL_4V9F_082
IL_27635.1
IL_4V6E_2841/DA/1196:1199,
1/DA/1246:1250
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4EYA_008
IL_30621.2
IL_4V6E_2851/DA/1202:1206,
1/DA/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_4V6E_2861/DA/1208:1215,
1/DA/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7A0S_043
IL_70923.2
IL_4V6E_2871/DA/1262:1269,
1/DA/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_4V6E_2881/DA/1319:1323,
1/DA/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_4V6E_2891/DA/1351:1355,
1/DA/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_4V6E_2901/DA/1357:1361,
1/DA/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_4V6E_2911/DA/1415:1416,
1/DA/1582:1587
No text annotation
Not in a motif group
IL_4V6E_2921/DA/1417:1421,
1/DA/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_4V6E_2931/DA/1432:1435,
1/DA/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_4V6E_2941/DA/1437:1440,
1/DA/1551:1555
No text annotation
Not in a motif group
IL_4V6E_2951/DA/1468:1471,
1/DA/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_4V6E_2961/DA/1474:1478,
1/DA/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_4V6E_2971/DA/1481:1482,
1/DA/1507:1510
No text annotation
Not in a motif group
IL_4V6E_2981/DA/1489:1491,
1/DA/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_4V6E_2991/DA/1526:1529,
1/DA/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_4V6E_3001/DA/1651:1656,
1/DA/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_4V6E_3011/DA/1663:1665,
1/DA/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_4V6E_3021/DA/1666:1669,
1/DA/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_5J7L_306
IL_50694.2
IL_4V6E_3031/DA/1669:1674,
1/DA/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_5J7L_307
IL_82842.2
IL_4V6E_3041/DA/1686:1691,
1/DA/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_5J7L_308
IL_65969.2
IL_4V6E_3051/DA/1712:1718,
1/DA/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_4V6E_3061/DA/1720:1724,
1/DA/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_4V6E_3071/DA/1727:1728,
1/DA/1731:1733
Single bulged C
Not in a motif group
homologous
IL_5J7L_311
IL_61258.12
IL_4V6E_3081/DA/1770:1771,
1/DA/1980:1982
Single bulged A
Not in a motif group
homologous
IL_7RQB_069
IL_37497.2
IL_4V6E_3091/DA/1798:1804,
1/DA/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_4V6E_3101/DA/1837:1840,
1/DA/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_4V6E_3111/DA/1841:1842,
1/DA/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_4V6E_3131/DA/1864:1867,
1/DA/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_4V6E_3141/DA/1933:1934,
1/DA/1964:1967
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_076
IL_59677.2
IL_4V6E_3151/DA/1934:1945,
1/DA/1961:1964
No text annotation
Not in a motif group
geometric
IL_7A0S_072
IL_81589.2
IL_4V6E_3161/DA/2050:2052,
1/DA/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.1
IL_4V6E_3171/DA/2054:2056,
1/DA/2612:2615
No text annotation
Not in a motif group
homologous
IL_5J7L_321
IL_54678.5
IL_4V6E_3181/DA/2067:2069,
1/DA/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7A0S_075
IL_83039.13
IL_4V6E_3191/DA/2070:2071,
1/DA/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7A0S_076
IL_42622.2
IL_4V6E_3201/DA/2081:2083,
1/DA/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_4V6E_3211/DA/2085:2087,
1/DA/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_4V6E_3221/DA/2103:2105,
1/DA/2184:2186
Intercalated cWW
Not in a motif group
geometric
IL_7A0S_044
IL_82842.2
IL_4V6E_3231/DA/2108:2110,
1/DA/2179:2181
No text annotation
Not in a motif group
IL_4V6E_3241/DA/2202:2204,
1/DA/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_4V6E_3251/DA/2350:2353,
1/DA/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_4V6E_3261/DA/2401:2403,
1/DA/2414:2415
No text annotation
Not in a motif group
IL_4V6E_3271/DA/2453:2454,
1/DA/2498:2500
Single stack bend
Not in a motif group
homologous
IL_4WF9_089
IL_76488.2
IL_4V6E_3281/DA/2454:2455,
1/DA/2496:2498
Major groove platform
Not in a motif group
geometric
IL_7RQB_092
IL_27635.1
IL_4V6E_3291/DA/2457:2459,
1/DA/2493:2494
Major groove platform
Not in a motif group
homologous
IL_4WF9_091
IL_27635.1
IL_4V6E_3301/DA/2459:2461,
1/DA/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_5J7L_337
IL_92788.2
IL_4V6E_3311/DA/2466:2470,
1/DA/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_4V6E_3321/DA/2507:2508,
1/DA/2580:2582
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_4V6E_3331/DA/2510:2512,
1/DA/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_340
IL_90933.2
IL_4V6E_3341/DA/2512:2513,
1/DA/2571:2574
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_4V6E_3351/DA/2522:2523,
1/DA/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_7A0S_091
IL_95601.3
IL_4V6E_3361/DA/2591:2592,
1/DA/2601:2603
Single bulged A
Not in a motif group
homologous
IL_5J7L_344
IL_37497.2
IL_4V6E_3371/DA/2636:2640,
1/DA/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_4V6E_3381/DA/2652:2658,
1/DA/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_5J7L_346
IL_16458.1
IL_4V6E_3391/DA/2680:2684,
1/DA/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_4V6E_3401/DA/2687:2691,
1/DA/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_4V6E_3411/DA/2695:2696,
1/DA/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_4V6E_3421/DA/2737:2742,
1/DA/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_4V6E_3431/DA/2806:2811,
1/DA/2889:2892
No text annotation
Not in a motif group
homologous
IL_5J7L_351
IL_49460.2
IL_4V6E_3441/DA/2838:2839,
1/DA/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_16396.2
IL_4V6E_3451/DA/2843:2846,
1/DA/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_4V6E_3461/DA/2847:2852,
1/DA/2865:2869
No text annotation
Not in a motif group
homologous
IL_7A0S_101
IL_83162.5
IL_4V6E_3471/DB/17:18,
1/DB/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.2
IL_4V6E_3481/DB/23:28,
1/DB/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_4V6E_3491/DB/30:31,
1/DB/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_357
IL_09061.6
IL_4V6E_3501/DB/34:38,
1/DB/44:48
Symmetric double minor groove platform
Not in a motif group
geometric
IL_5J7L_358
IL_58103.6
IL_4V6E_3511/DB/71:79,
1/DB/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3

Problematic loops

#loop idProblemSequence
IL_4V6E_105Kink-turn
IL_4V6E_148No text annotation
IL_4V6E_312Major groove minor groove platform; mini C-loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V6E_0011/AA/46:47,
1/AA/361:367,
1/AA/393:395
No text annotation
Not in a motif group
homologous
J3_5J7L_001
NA
J3_4V6E_0021/AA/586:588,
1/AA/651:655,
1/AA/751:755
No text annotation
Not in a motif group
J3_4V6E_0031/AA/672:673,
1/AA/717:725,
1/AA/732:734
No text annotation
Not in a motif group
homologous
J3_5J7L_003
NA
J3_4V6E_0041/AA/826:829,
1/AA/857:861,
1/AA/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_4V6E_0051/AA/936:939,
1/AA/1344:1350,
1/AA/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_4V6E_0061/AA/943:946,
1/AA/1235:1237,
1/AA/1337:1340
No text annotation
Not in a motif group
homologous
J3_5J7L_005
NA
J3_4V6E_0071/AA/955:962,
1/AA/973:984,
1/AA/1221:1225
No text annotation
Not in a motif group
J3_4V6E_0081/AA/990:993,
1/AA/1045:1047,
1/AA/1210:1215
No text annotation
Not in a motif group
homologous
J3_5J7L_007
NA
J3_4V6E_0091/AA/1003:1006,
1/AA/1023:1027,
1/AA/1034:1037
No text annotation
Not in a motif group
J3_4V6E_0101/AA/1063:1068,
1/AA/1107:1113,
1/AA/1187:1193
No text annotation
Not in a motif group
J3_4V6E_0111/AA/1073:1074,
1/AA/1083:1087,
1/AA/1098:1102
No text annotation
Not in a motif group
homologous
J3_5J7L_009
NA
J3_4V6E_0121/AA/1116:1118,
1/AA/1155:1158,
1/AA/1181:1184
No text annotation
Not in a motif group
homologous
J3_5J7L_010
NA
J3_4V6E_0131/AA/1237:1241,
1/AA/1296:1303,
1/AA/1334:1337
No text annotation
Not in a motif group
J3_4V6E_0141/BA/30:31,
1/BA/474:481,
1/BA/509:510
No text annotation
Not in a motif group
homologous
J3_5J7L_036
NA
J3_4V6E_0151/BA/55:57,
1/BA/70:76,
1/BA/110:115
No text annotation
Not in a motif group
J3_4V6E_0161/BA/683:689,
1/BA/773:775,
1/BA/791:794
No text annotation
Not in a motif group
homologous
J3_5J7L_038
NA
J3_4V6E_0171/BA/698:700,
1/BA/732:736,
1/BA/760:763
No text annotation
Not in a motif group
homologous
J3_5J7L_039
NA
J3_4V6E_0181/BA/1055:1057,
1/BA/1081:1087,
1/BA/1102:1104
No text annotation
Not in a motif group
homologous
J3_6PRV_001
NA
J3_4V6E_0191/BA/1298:1303,
1/BA/1625:1627,
1/BA/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_4V6E_0201/BA/1306:1309,
1/BA/1605:1611,
1/BA/1620:1622
No text annotation
Not in a motif group
homologous
J3_5J7L_042
NA
J3_4V6E_0211/BA/1344:1349,
1/BA/1382:1385,
1/BA/1402:1403
No text annotation
Not in a motif group
homologous
J3_5J7L_043
NA
J3_4V6E_0221/BA/2091:2093,
1/BA/2196:2200,
1/BA/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_4V6E_0231/BA/2295:2299,
1/BA/2317:2323,
1/BA/2332:2337
No text annotation
Not in a motif group
J3_4V6E_0241/BA/2517:2520,
1/BA/2545:2547,
1/BA/2561:2567
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_4V6E_0251/BA/2789:2791,
1/BA/2805:2806,
1/BA/2892:2894
No text annotation
Not in a motif group
J3_4V6E_0261/BA/2812:2815,
1/BA/2831:2836,
1/BA/2882:2888
No text annotation
Not in a motif group
homologous
J3_5J7L_048
NA
J3_4V6E_0271/BB/10:16,
1/BB/68:70,
1/BB/106:110
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA
J3_4V6E_0281/CA/46:47,
1/CA/361:367,
1/CA/393:395
No text annotation
Not in a motif group
J3_4V6E_0291/CA/586:588,
1/CA/651:655,
1/CA/751:755
No text annotation
Not in a motif group
J3_4V6E_0301/CA/672:673,
1/CA/717:725,
1/CA/732:734
No text annotation
Not in a motif group
J3_4V6E_0311/CA/826:829,
1/CA/857:861,
1/CA/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_4V6E_0321/CA/936:939,
1/CA/1344:1350,
1/CA/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_4V6E_0331/CA/943:946,
1/CA/1235:1237,
1/CA/1337:1340
No text annotation
Not in a motif group
J3_4V6E_0341/CA/955:962,
1/CA/973:984,
1/CA/1221:1225
No text annotation
Not in a motif group
J3_4V6E_0351/CA/990:993,
1/CA/1045:1047,
1/CA/1210:1215
No text annotation
Not in a motif group
J3_4V6E_0361/CA/1003:1006,
1/CA/1023:1027,
1/CA/1034:1037
No text annotation
Not in a motif group
J3_4V6E_0371/CA/1063:1068,
1/CA/1107:1113,
1/CA/1187:1193
No text annotation
Not in a motif group
J3_4V6E_0381/CA/1073:1074,
1/CA/1083:1087,
1/CA/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_4V6E_0391/CA/1116:1118,
1/CA/1155:1158,
1/CA/1181:1184
No text annotation
Not in a motif group
J3_4V6E_0401/CA/1237:1241,
1/CA/1296:1303,
1/CA/1334:1337
No text annotation
Not in a motif group
J3_4V6E_0411/DA/30:31,
1/DA/474:481,
1/DA/509:510
No text annotation
Not in a motif group
J3_4V6E_0421/DA/56:57,
1/DA/70:76,
1/DA/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_4V6E_0431/DA/683:689,
1/DA/773:775,
1/DA/791:794
No text annotation
Not in a motif group
J3_4V6E_0441/DA/698:700,
1/DA/732:736,
1/DA/760:763
No text annotation
Not in a motif group
J3_4V6E_0451/DA/1055:1057,
1/DA/1081:1087,
1/DA/1102:1104
No text annotation
Not in a motif group
homologous
J3_6PRV_001
NA
J3_4V6E_0461/DA/1298:1303,
1/DA/1625:1627,
1/DA/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_4V6E_0471/DA/1306:1309,
1/DA/1605:1611,
1/DA/1620:1622
No text annotation
Not in a motif group
homologous
J3_7RQB_008
NA
J3_4V6E_0481/DA/2091:2093,
1/DA/2196:2200,
1/DA/2223:2228
No text annotation
Not in a motif group
homologous
J3_5J7L_044
NA
J3_4V6E_0491/DA/2295:2299,
1/DA/2317:2323,
1/DA/2332:2337
No text annotation
Not in a motif group
J3_4V6E_0501/DA/2517:2520,
1/DA/2545:2547,
1/DA/2561:2567
No text annotation
Not in a motif group
homologous
J3_5J7L_046
NA
J3_4V6E_0511/DA/2789:2791,
1/DA/2805:2806,
1/DA/2892:2894
No text annotation
Not in a motif group
J3_4V6E_0521/DA/2812:2815,
1/DA/2831:2836,
1/DA/2882:2888
No text annotation
Not in a motif group
homologous
J3_5J7L_048
NA
J3_4V6E_0531/DB/10:16,
1/DB/68:70,
1/DB/106:110
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA

Problematic loops

No problematic loops


Coloring options:
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