Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V5S_0011/AA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4V5S_0031/AA/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_35490.2
HL_4V5S_0041/AA/189C:189HNo text annotation
Not in a motif group
HL_4V5S_0051/AA/201:216No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_91104.1
HL_4V5S_0061/AA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4V5S_0071/AA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_35490.2
HL_4V5S_0081/AA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4V5S_0101/AA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_35490.2
HL_4V5S_0111/AA/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_4V5S_0121/AA/458:473No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4V5S_0131/AA/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_70546.1
HL_4V5S_0141/AA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.3
HL_4V5S_0151/AA/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_4V5S_0161/AA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_4V5S_0171/AA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4V5S_0181/AA/838:848No text annotation
Not in a motif group
HL_4V5S_0191/AA/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_35490.2
HL_4V5S_0201/AA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_35490.2
HL_4V5S_0211/AA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V5S_0221/AA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_35490.2
HL_4V5S_0231/AA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_35490.2
HL_4V5S_0241/AA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V5S_0251/AA/1128:1143No text annotation
Not in a motif group
HL_4V5S_0261/AA/1165:1171No text annotation
Not in a motif group
HL_4V5S_0271/AA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_35490.2
HL_4V5S_0281/AA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_41998.1
HL_4V5S_0291/AA/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_4V5S_0301/AA/1445:1457No text annotation
Not in a motif group
HL_4V5S_0311/AA/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_4V5S_0331/AV/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4TUE_034
HL_53597.4
HL_4V5S_0361/AW/30:40No text annotation
Not in a motif group
homologous
HL_4V7M_039
HL_36684.1
HL_4V5S_0371/AW/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_1U0B_003
HL_22280.4
HL_4V5S_0381/AY/13:22No text annotation
Not in a motif group
homologous
HL_5E81_205
NA
HL_4V5S_0391/AY/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_5IBB_210
HL_53597.4
HL_4V5S_0401/AY/53:61No text annotation
Not in a motif group
homologous
HL_6CFJ_108
NA
HL_4V5S_0411/BA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.2
HL_4V5S_0421/BA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_4V5S_0431/BA/123:128No text annotation
Not in a motif group
homologous
HL_7RQB_003
HL_70546.1
HL_4V5S_0441/BA/139:142ANo text annotation
Not in a motif group
HL_4V5S_0451/BA/154A:171No text annotation
Not in a motif group
geometric
HL_4O26_001
HL_86343.1
HL_4V5S_0461/BA/194:201No text annotation
Not in a motif group
homologous
HL_7RQB_006
HL_06192.2
HL_4V5S_0471/BA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_4V5S_0481/BA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_4V5S_0491/BA/271F:271RNo text annotation
Not in a motif group
HL_4V5S_0501/BA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_41998.1
HL_4V5S_0511/BA/319:323No text annotation
Not in a motif group
homologous
HL_7A0S_011
HL_70546.1
HL_4V5S_0521/BA/326:336No text annotation
Not in a motif group
HL_4V5S_0531/BA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_4V5S_0541/BA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4V5S_0551/BA/462:467GNRA
Not in a motif group
homologous
HL_5J7L_147
HL_35490.2
HL_4V5S_0561/BA/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_35490.2
HL_4V5S_0571/BA/543:549GNRA
Not in a motif group
geometric
HL_6CU1_002
HL_35490.2
HL_4V5S_0581/BA/566:575No text annotation
Not in a motif group
homologous
HL_7RQB_018
HL_41998.1
HL_4V5S_0591/BA/612:615No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_4V5S_0601/BA/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_35490.2
HL_4V5S_0611/BA/641:647No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_35490.2
HL_4V5S_0621/BA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4V5S_0631/BA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_4V5S_0641/BA/779:785Other HL
Not in a motif group
geometric
HL_2NUE_001
HL_07518.1
HL_4V5S_0651/BA/826:831No text annotation
Not in a motif group
homologous
HL_7A0S_024
HL_53619.1
HL_4V5S_0661/BA/883:893No text annotation
Not in a motif group
HL_4V5S_0671/BA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_35490.2
HL_4V5S_0681/BA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_4V5S_0691/BA/1055:1104No text annotation
Not in a motif group
HL_4V5S_0701/BA/1168:1181No text annotation
Not in a motif group
HL_4V5S_0711/BA/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_35490.2
HL_4V5S_0721/BA/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_41998.1
HL_4V5S_0731/BA/1324:1330No text annotation
Not in a motif group
homologous
HL_4WF9_033
HL_46680.1
HL_4V5S_0741/BA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_4V5S_0751/BA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_4V5S_0761/BA/1450A:1461No text annotation
Not in a motif group
HL_4V5S_0771/BA/1492:1498No text annotation
Not in a motif group
HL_4V5S_0781/BA/1532:1537No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_70546.1
HL_4V5S_0791/BA/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.5
HL_4V5S_0801/BA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V5S_0811/BA/1631:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.2
HL_4V5S_0821/BA/1691:1696UNCG
Not in a motif group
homologous
HL_5J7L_175
HL_03562.2
HL_4V5S_0831/BA/1719:1743No text annotation
Not in a motif group
geometric
HL_2Y9H_005
HL_47100.1
HL_4V5S_0841/BA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.5
HL_4V5S_0851/BA/1777:1787No text annotation
Not in a motif group
homologous
HL_7RQB_045
HL_43613.5
HL_4V5S_0861/BA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_35490.2
HL_4V5S_0871/BA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_35490.2
HL_4V5S_0881/BA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V5S_0891/BA/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_4V5S_0901/BA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4V5S_0911/BA/2143:2148UNCG
Not in a motif group
homologous
HL_3U4M_001
HL_03562.2
HL_4V5S_0921/BA/2205:2219No text annotation
Not in a motif group
geometric
HL_5TBW_004
HL_98426.1
HL_4V5S_0931/BA/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_4V5S_0941/BA/2264:2276No text annotation
Not in a motif group
homologous
HL_4WF9_050
HL_19870.6
HL_4V5S_0951/BA/2303:2313No text annotation
Not in a motif group
homologous
HL_4WF9_051
NA
HL_4V5S_0961/BA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.4
HL_4V5S_0971/BA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_53619.1
HL_4V5S_0981/BA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_35490.2
HL_4V5S_0991/BA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_40210.2
HL_4V5S_1001/BA/2471:2479No text annotation
Not in a motif group
homologous
HL_7RQB_060
HL_06192.2
HL_4V5S_1011/BA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_91104.1
HL_4V5S_1021/BA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V5S_1031/BA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_35490.2
HL_4V5S_1041/BA/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_35490.2
HL_4V5S_1051/BA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_4V5S_1061/BA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_4V5S_1081/BA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_64690.1
HL_4V5S_1091/BA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_35490.2
HL_4V5S_1101/BB/38:44No text annotation
Not in a motif group
geometric
HL_7RQB_070
HL_87939.2
HL_4V5S_1111/BB/86:91No text annotation
Not in a motif group
homologous
HL_7RQB_071
HL_35490.2
HL_4V5S_1121/CA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4V5S_1141/CA/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_35490.2
HL_4V5S_1151/CA/189C:189HNo text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_61849.1
HL_4V5S_1161/CA/201:216No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_91104.1
HL_4V5S_1171/CA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4V5S_1181/CA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_35490.2
HL_4V5S_1191/CA/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_4V5S_1201/CA/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_4V5S_1211/CA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_35490.2
HL_4V5S_1221/CA/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_4V5S_1231/CA/458:473No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4V5S_1241/CA/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_70546.1
HL_4V5S_1251/CA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.3
HL_4V5S_1261/CA/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_4V5S_1271/CA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_4V5S_1281/CA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4V5S_1291/CA/838:848No text annotation
Not in a motif group
HL_4V5S_1301/CA/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_35490.2
HL_4V5S_1311/CA/897:902GNRA
Not in a motif group
homologous
HL_5J7L_020
HL_35490.2
HL_4V5S_1321/CA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V5S_1331/CA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_35490.2
HL_4V5S_1351/CA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_35490.2
HL_4V5S_1361/CA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V5S_1371/CA/1128:1143No text annotation
Not in a motif group
HL_4V5S_1381/CA/1163:1173No text annotation
Not in a motif group
HL_4V5S_1391/CA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_35490.2
HL_4V5S_1401/CA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_41998.1
HL_4V5S_1411/CA/1356:1366No text annotation
Not in a motif group
HL_4V5S_1421/CA/1445:1457No text annotation
Not in a motif group
geometric
HL_7RQB_011
HL_70546.1
HL_4V5S_1431/CA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V5S_1451/CV/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4TUE_034
HL_53597.4
HL_4V5S_1481/CW/29:41No text annotation
Not in a motif group
homologous
HL_6GSL_221
HL_06285.3
HL_4V5S_1491/CY/13:22No text annotation
Not in a motif group
homologous
HL_5E81_205
NA
HL_4V5S_1501/CY/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_5IBB_210
HL_53597.4
HL_4V5S_1511/CY/53:61No text annotation
Not in a motif group
homologous
HL_6CFJ_108
NA
HL_4V5S_1521/DA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.2
HL_4V5S_1531/DA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_4V5S_1541/DA/123:128No text annotation
Not in a motif group
homologous
HL_7RQB_003
HL_70546.1
HL_4V5S_1551/DA/137:143No text annotation
Not in a motif group
HL_4V5S_1561/DA/154A:171No text annotation
Not in a motif group
geometric
HL_4O26_001
HL_86343.1
HL_4V5S_1571/DA/194:201No text annotation
Not in a motif group
geometric
HL_7RQB_006
HL_06192.2
HL_4V5S_1581/DA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_4V5S_1591/DA/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_4V5S_1601/DA/271F:271RNo text annotation
Not in a motif group
HL_4V5S_1611/DA/304:313No text annotation
Not in a motif group
HL_4V5S_1621/DA/319:323No text annotation
Not in a motif group
homologous
HL_7A0S_011
HL_70546.1
HL_4V5S_1631/DA/326:336No text annotation
Not in a motif group
HL_4V5S_1641/DA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_4V5S_1651/DA/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_4V5S_1661/DA/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_35490.2
HL_4V5S_1671/DA/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_35490.2
HL_4V5S_1681/DA/543:549GNRA
Not in a motif group
geometric
HL_6CU1_002
HL_35490.2
HL_4V5S_1691/DA/566:575No text annotation
Not in a motif group
geometric
HL_7RQB_018
HL_41998.1
HL_4V5S_1701/DA/612:615No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_4V5S_1711/DA/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_35490.2
HL_4V5S_1721/DA/641:647No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_35490.2
HL_4V5S_1731/DA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4V5S_1741/DA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_4V5S_1751/DA/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_56241.1
HL_4V5S_1761/DA/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_53619.1
HL_4V5S_1771/DA/883:893No text annotation
Not in a motif group
HL_4V5S_1781/DA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_35490.2
HL_4V5S_1791/DA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_4V5S_1801/DA/1055:1104No text annotation
Not in a motif group
HL_4V5S_1811/DA/1168:1181No text annotation
Not in a motif group
HL_4V5S_1821/DA/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_35490.2
HL_4V5S_1831/DA/1281:1289No text annotation
Not in a motif group
homologous
HL_7A0S_032
HL_41998.1
HL_4V5S_1841/DA/1324:1330No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_4V5S_1851/DA/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_4V5S_1861/DA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_4V5S_1871/DA/1450A:1461No text annotation
Not in a motif group
HL_4V5S_1881/DA/1492:1498No text annotation
Not in a motif group
HL_4V5S_1891/DA/1532:1537No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_70546.1
HL_4V5S_1901/DA/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.5
HL_4V5S_1911/DA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V5S_1921/DA/1631:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.2
HL_4V5S_1931/DA/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_4V5S_1941/DA/1719:1743No text annotation
Not in a motif group
HL_4V5S_1951/DA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.5
HL_4V5S_1961/DA/1777:1787No text annotation
Not in a motif group
homologous
HL_7RQB_045
HL_43613.5
HL_4V5S_1971/DA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_35490.2
HL_4V5S_1981/DA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_35490.2
HL_4V5S_1991/DA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V5S_2001/DA/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_4V5S_2011/DA/1992:1996No text annotation
Not in a motif group
HL_4V5S_2021/DA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4V5S_2031/DA/2143:2148UNCG
Not in a motif group
homologous
HL_3U4M_001
HL_03562.2
HL_4V5S_2041/DA/2205:2219No text annotation
Not in a motif group
geometric
HL_5TBW_004
HL_98426.1
HL_4V5S_2051/DA/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_4V5S_2061/DA/2264:2276No text annotation
Not in a motif group
homologous
HL_4WF9_050
HL_19870.6
HL_4V5S_2071/DA/2303:2313No text annotation
Not in a motif group
homologous
HL_4WF9_051
NA
HL_4V5S_2081/DA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.4
HL_4V5S_2091/DA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_53619.1
HL_4V5S_2101/DA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_35490.2
HL_4V5S_2111/DA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_40210.2
HL_4V5S_2121/DA/2471:2479No text annotation
Not in a motif group
homologous
HL_7RQB_060
HL_06192.2
HL_4V5S_2131/DA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_91104.1
HL_4V5S_2141/DA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V5S_2151/DA/2594:2599No text annotation
Not in a motif group
homologous
HL_7A0S_062
HL_35490.2
HL_4V5S_2161/DA/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_35490.2
HL_4V5S_2171/DA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_4V5S_2181/DA/2745:2759No text annotation
Not in a motif group
homologous
HL_4WF9_062
HL_56677.7
HL_4V5S_2191/DA/2793:2804No text annotation
Not in a motif group
HL_4V5S_2201/DA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_64690.1
HL_4V5S_2211/DA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_35490.2
HL_4V5S_2221/DB/38:44No text annotation
Not in a motif group
geometric
HL_7RQB_070
HL_87939.2
HL_4V5S_2231/DB/86:91No text annotation
Not in a motif group
homologous
HL_7RQB_071
HL_35490.2

Problematic loops

#loop idProblemSequence
HL_4V5S_002No text annotation
HL_4V5S_009UNCG
HL_4V5S_032No text annotation
HL_4V5S_034T-loop with 2 stacked bulged bases
HL_4V5S_035No text annotation
HL_4V5S_107No text annotation
HL_4V5S_113No text annotation
HL_4V5S_134No text annotation
HL_4V5S_144No text annotation
HL_4V5S_146T-loop with 2 stacked bulged bases
HL_4V5S_147No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V5S_0011/AA/30:32,
1/AA/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.3
IL_4V5S_0021/AA/44:45,
1/AA/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.6
IL_4V5S_0031/AA/47:52,
1/AA/359:361
No text annotation
Not in a motif group
geometric
IL_4LFB_003
IL_14177.1
IL_4V5S_0041/AA/54:56,
1/AA/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_80097.1
IL_4V5S_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_6CZR_117
IL_76389.1
IL_4V5S_0061/AA/67:69,
1/AA/100:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_86319.2
IL_4V5S_0071/AA/129:131,
1/AA/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_4V5S_0081/AA/132:136,
1/AA/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_4V5S_0091/AA/148:153,
1/AA/168:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_4V5S_0101/AA/186:188,
1/AA/189L:191
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_86319.2
IL_4V5S_0111/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_4V5S_0121/AA/249:253,
1/AA/273:275
No text annotation
Not in a motif group
homologous
IL_6CZR_124
IL_38684.1
IL_4V5S_0131/AA/292:293,
1/AA/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_4V5S_0141/AA/367:369,
1/AA/392:393
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.16
IL_4V5S_0151/AA/371:375,
1/AA/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_4V5S_0161/AA/375:376,
1/AA/387:389
Single bulged G
Not in a motif group
homologous
IL_4LFB_016
IL_00225.3
IL_4V5S_0171/AA/409:416,
1/AA/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_4V5S_0181/AA/446:450,
1/AA/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4LFB_018
IL_88269.3
IL_4V5S_0191/AA/450:455,
1/AA/476:483
No text annotation
Not in a motif group
geometric
IL_4LFB_019
IL_11882.1
IL_4V5S_0201/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_4V5S_0211/AA/515:521,
1/AA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V5S_0221/AA/569:575,
1/AA/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_4V5S_0231/AA/580:584,
1/AA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_4V5S_0241/AA/594:596,
1/AA/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.3
IL_4V5S_0251/AA/597:598,
1/AA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.8
IL_4V5S_0261/AA/605:612,
1/AA/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_4V5S_0271/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_4V5S_0281/AA/657:658,
1/AA/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.3
IL_4V5S_0291/AA/662:666,
1/AA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_4V5S_0301/AA/673:678,
1/AA/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.2
IL_4V5S_0311/AA/683:688,
1/AA/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_4V5S_0321/AA/774:778,
1/AA/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_4V5S_0331/AA/779:783,
1/AA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_4V5S_0341/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4V5S_0351/AA/922:923,
1/AA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.6
IL_4V5S_0361/AA/925:927,
1/AA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.3
IL_4V5S_0371/AA/933:935,
1/AA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_4V5S_0381/AA/953:954,
1/AA/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.4
IL_4V5S_0391/AA/993:997,
1/AA/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_4LFB_039
IL_47078.1
IL_4V5S_0411/AA/1048:1050,
1/AA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.16
IL_4V5S_0421/AA/1052:1056,
1/AA/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_4V5S_0431/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_4LFB_045
IL_80097.1
IL_4V5S_0441/AA/1060:1061,
1/AA/1195:1197
Single bulged U
Not in a motif group
geometric
IL_4LFB_046
IL_83039.16
IL_4V5S_0451/AA/1061:1063,
1/AA/1193:1195
No text annotation
Not in a motif group
homologous
IL_5J7L_050
IL_86319.2
IL_4V5S_0461/AA/1124:1128,
1/AA/1143:1149
No text annotation
Not in a motif group
homologous
IL_4LFB_048
IL_85222.1
IL_4V5S_0471/AA/1247:1253,
1/AA/1284:1290
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_4V5S_0481/AA/1255:1258,
1/AA/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_4V5S_0491/AA/1259:1262,
1/AA/1273:1276
Double sheared
Not in a motif group
geometric
IL_5J7L_256
IL_09705.10
IL_4V5S_0501/AA/1303:1308,
1/AA/1329:1334
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_4V5S_0511/AA/1399:1401,
1/AA/1501:1504
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.3
IL_4V5S_0521/AA/1401:1404,
1/AA/1497:1501
No text annotation
Not in a motif group
geometric