4V5S Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_4V5S_001 | 1/AA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
HL_4V5S_003 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_85603.1 | |
HL_4V5S_004 | 1/AA/189C:189H | No text annotation Not in a motif group | ||
HL_4V5S_005 | 1/AA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_91104.2 | |
HL_4V5S_006 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.3 | |
HL_4V5S_007 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_85603.1 | |
HL_4V5S_008 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
HL_4V5S_010 | 1/AA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_85603.1 | |
HL_4V5S_011 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_29960.1 | |
HL_4V5S_012 | 1/AA/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_85603.1 | |
HL_4V5S_013 | 1/AA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_70546.2 | |
HL_4V5S_014 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.3 | |
HL_4V5S_015 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.2 | |
HL_4V5S_016 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.3 | |
HL_4V5S_017 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.2 | |
HL_4V5S_018 | 1/AA/838:848 | No text annotation Not in a motif group | ||
HL_4V5S_019 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_85603.1 | |
HL_4V5S_020 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_85603.1 | |
HL_4V5S_021 | 1/AA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
HL_4V5S_022 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_85603.1 | |
HL_4V5S_023 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_85603.1 | |
HL_4V5S_024 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
HL_4V5S_025 | 1/AA/1128:1143 | No text annotation Not in a motif group | ||
HL_4V5S_026 | 1/AA/1165:1171 | No text annotation Not in a motif group | ||
HL_4V5S_027 | 1/AA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_85603.1 | |
HL_4V5S_028 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_41998.2 | |
HL_4V5S_029 | 1/AA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
HL_4V5S_030 | 1/AA/1445:1457 | No text annotation Not in a motif group | ||
HL_4V5S_031 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
HL_4V5S_033 | 1/AV/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.4 | |
HL_4V5S_036 | 1/AW/30:40 | No text annotation Not in a motif group | homologous HL_4V7M_039 HL_36684.1 | |
HL_4V5S_037 | 1/AW/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_1U0B_003 HL_22280.5 | |
HL_4V5S_038 | 1/AY/13:22 | No text annotation Not in a motif group | homologous HL_5E81_205 NA | |
HL_4V5S_039 | 1/AY/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_5IBB_210 HL_53597.4 | |
HL_4V5S_040 | 1/AY/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
HL_4V5S_041 | 1/BA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 NA | |
HL_4V5S_042 | 1/BA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 NA | |
HL_4V5S_043 | 1/BA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 NA | |
HL_4V5S_044 | 1/BA/139:142A | No text annotation Not in a motif group | ||
HL_4V5S_045 | 1/BA/154A:171 | No text annotation Not in a motif group | geometric HL_4O26_001 HL_86343.1 | |
HL_4V5S_046 | 1/BA/194:201 | No text annotation Not in a motif group | homologous HL_7RQB_006 NA | |
HL_4V5S_047 | 1/BA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 NA | |
HL_4V5S_048 | 1/BA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 NA | |
HL_4V5S_049 | 1/BA/271F:271R | No text annotation Not in a motif group | ||
HL_4V5S_050 | 1/BA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 NA | |
HL_4V5S_051 | 1/BA/319:323 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_70546.2 | |
HL_4V5S_052 | 1/BA/326:336 | No text annotation Not in a motif group | ||
HL_4V5S_053 | 1/BA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 NA | |
HL_4V5S_054 | 1/BA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 NA | |
HL_4V5S_055 | 1/BA/462:467 | GNRA Not in a motif group | homologous HL_5J7L_147 HL_85603.1 | |
HL_4V5S_056 | 1/BA/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 NA | |
HL_4V5S_057 | 1/BA/543:549 | GNRA Not in a motif group | geometric HL_6CU1_002 HL_85603.1 | |
HL_4V5S_058 | 1/BA/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 NA | |
HL_4V5S_059 | 1/BA/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 NA | |
HL_4V5S_060 | 1/BA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 NA | |
HL_4V5S_061 | 1/BA/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 NA | |
HL_4V5S_062 | 1/BA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 NA | |
HL_4V5S_063 | 1/BA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 NA | |
HL_4V5S_064 | 1/BA/779:785 | Other HL Not in a motif group | geometric HL_2NUE_001 HL_07518.1 | |
HL_4V5S_065 | 1/BA/826:831 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_55195.1 | |
HL_4V5S_066 | 1/BA/883:893 | No text annotation Not in a motif group | ||
HL_4V5S_067 | 1/BA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 NA | |
HL_4V5S_068 | 1/BA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 NA | |
HL_4V5S_069 | 1/BA/1055:1104 | No text annotation Not in a motif group | ||
HL_4V5S_070 | 1/BA/1168:1181 | No text annotation Not in a motif group | ||
HL_4V5S_071 | 1/BA/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 NA | |
HL_4V5S_072 | 1/BA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 NA | |
HL_4V5S_073 | 1/BA/1324:1330 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.2 | |
HL_4V5S_074 | 1/BA/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 NA | |
HL_4V5S_075 | 1/BA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 NA | |
HL_4V5S_076 | 1/BA/1450A:1461 | No text annotation Not in a motif group | ||
HL_4V5S_077 | 1/BA/1492:1498 | No text annotation Not in a motif group | ||
HL_4V5S_078 | 1/BA/1532:1537 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_70546.2 | |
HL_4V5S_079 | 1/BA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 NA | |
HL_4V5S_080 | 1/BA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 NA | |
HL_4V5S_081 | 1/BA/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 NA | |
HL_4V5S_082 | 1/BA/1691:1696 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_29960.1 | |
HL_4V5S_083 | 1/BA/1719:1743 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
HL_4V5S_084 | 1/BA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 NA | |
HL_4V5S_085 | 1/BA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 NA | |
HL_4V5S_086 | 1/BA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 NA | |
HL_4V5S_087 | 1/BA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 NA | |
HL_4V5S_088 | 1/BA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
HL_4V5S_089 | 1/BA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 NA | |
HL_4V5S_090 | 1/BA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 NA | |
HL_4V5S_091 | 1/BA/2143:2148 | UNCG Not in a motif group | homologous HL_3U4M_001 HL_29960.1 | |
HL_4V5S_092 | 1/BA/2205:2219 | No text annotation Not in a motif group | geometric HL_5TBW_004 HL_75930.1 | |
HL_4V5S_093 | 1/BA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
HL_4V5S_094 | 1/BA/2264:2276 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.7 | |
HL_4V5S_095 | 1/BA/2303:2313 | No text annotation Not in a motif group | homologous HL_4WF9_051 NA | |
HL_4V5S_096 | 1/BA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 NA | |
HL_4V5S_097 | 1/BA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 NA | |
HL_4V5S_098 | 1/BA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 NA | |
HL_4V5S_099 | 1/BA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 NA | |
HL_4V5S_100 | 1/BA/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 NA | |
HL_4V5S_101 | 1/BA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 NA | |
HL_4V5S_102 | 1/BA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_22584.1 | |
HL_4V5S_103 | 1/BA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 NA | |
HL_4V5S_104 | 1/BA/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_85603.1 | |
HL_4V5S_105 | 1/BA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 NA | |
HL_4V5S_106 | 1/BA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 NA | |
HL_4V5S_108 | 1/BA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 NA | |
HL_4V5S_109 | 1/BA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 NA | |
HL_4V5S_110 | 1/BB/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_070 NA | |
HL_4V5S_111 | 1/BB/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 NA | |
HL_4V5S_112 | 1/CA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
HL_4V5S_114 | 1/CA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_85603.1 | |
HL_4V5S_115 | 1/CA/189C:189H | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_61849.1 | |
HL_4V5S_116 | 1/CA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_91104.2 | |
HL_4V5S_117 | 1/CA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.3 | |
HL_4V5S_118 | 1/CA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_85603.1 | |
HL_4V5S_119 | 1/CA/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
HL_4V5S_120 | 1/CA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_29960.1 | |
HL_4V5S_121 | 1/CA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_85603.1 | |
HL_4V5S_122 | 1/CA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_29960.1 | |
HL_4V5S_123 | 1/CA/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_85603.1 | |
HL_4V5S_124 | 1/CA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_70546.2 | |
HL_4V5S_125 | 1/CA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.3 | |
HL_4V5S_126 | 1/CA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.2 | |
HL_4V5S_127 | 1/CA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.3 | |
HL_4V5S_128 | 1/CA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.2 | |
HL_4V5S_129 | 1/CA/838:848 | No text annotation Not in a motif group | ||
HL_4V5S_130 | 1/CA/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_85603.1 | |
HL_4V5S_131 | 1/CA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_85603.1 | |
HL_4V5S_132 | 1/CA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
HL_4V5S_133 | 1/CA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_85603.1 | |
HL_4V5S_135 | 1/CA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_85603.1 | |
HL_4V5S_136 | 1/CA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
HL_4V5S_137 | 1/CA/1128:1143 | No text annotation Not in a motif group | ||
HL_4V5S_138 | 1/CA/1163:1173 | No text annotation Not in a motif group | ||
HL_4V5S_139 | 1/CA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_85603.1 | |
HL_4V5S_140 | 1/CA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_41998.2 | |
HL_4V5S_141 | 1/CA/1356:1366 | No text annotation Not in a motif group | ||
HL_4V5S_142 | 1/CA/1445:1457 | No text annotation Not in a motif group | geometric HL_7RQB_011 NA | |
HL_4V5S_143 | 1/CA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
HL_4V5S_145 | 1/CV/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.4 | |
HL_4V5S_148 | 1/CW/29:41 | No text annotation Not in a motif group | homologous HL_6GSL_221 HL_06285.3 | |
HL_4V5S_149 | 1/CY/13:22 | No text annotation Not in a motif group | homologous HL_5E81_205 NA | |
HL_4V5S_150 | 1/CY/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_5IBB_210 HL_53597.4 | |
HL_4V5S_151 | 1/CY/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
HL_4V5S_152 | 1/DA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 NA | |
HL_4V5S_153 | 1/DA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 NA | |
HL_4V5S_154 | 1/DA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 NA | |
HL_4V5S_155 | 1/DA/137:143 | No text annotation Not in a motif group | ||
HL_4V5S_156 | 1/DA/154A:171 | No text annotation Not in a motif group | geometric HL_4O26_001 HL_86343.1 | |
HL_4V5S_157 | 1/DA/194:201 | No text annotation Not in a motif group | geometric HL_7RQB_006 NA | |
HL_4V5S_158 | 1/DA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 NA | |
HL_4V5S_159 | 1/DA/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.8 | |
HL_4V5S_160 | 1/DA/271F:271R | No text annotation Not in a motif group | ||
HL_4V5S_161 | 1/DA/304:313 | No text annotation Not in a motif group | ||
HL_4V5S_162 | 1/DA/319:323 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_70546.2 | |
HL_4V5S_163 | 1/DA/326:336 | No text annotation Not in a motif group | ||
HL_4V5S_164 | 1/DA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 NA | |
HL_4V5S_165 | 1/DA/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.2 | |
HL_4V5S_166 | 1/DA/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_85603.1 | |
HL_4V5S_167 | 1/DA/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 NA | |
HL_4V5S_168 | 1/DA/543:549 | GNRA Not in a motif group | geometric HL_6CU1_002 HL_85603.1 | |
HL_4V5S_169 | 1/DA/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_018 NA | |
HL_4V5S_170 | 1/DA/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 NA | |
HL_4V5S_171 | 1/DA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 NA | |
HL_4V5S_172 | 1/DA/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 NA | |
HL_4V5S_173 | 1/DA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 NA | |
HL_4V5S_174 | 1/DA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 NA | |
HL_4V5S_175 | 1/DA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_56241.2 | |
HL_4V5S_176 | 1/DA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 NA | |
HL_4V5S_177 | 1/DA/883:893 | No text annotation Not in a motif group | ||
HL_4V5S_178 | 1/DA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 NA | |
HL_4V5S_179 | 1/DA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 NA | |
HL_4V5S_180 | 1/DA/1055:1104 | No text annotation Not in a motif group | ||
HL_4V5S_181 | 1/DA/1168:1181 | No text annotation Not in a motif group | ||
HL_4V5S_182 | 1/DA/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 NA | |
HL_4V5S_183 | 1/DA/1281:1289 | No text annotation Not in a motif group | homologous HL_7A0S_032 HL_41998.2 | |
HL_4V5S_184 | 1/DA/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 NA | |
HL_4V5S_185 | 1/DA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.3 | |
HL_4V5S_186 | 1/DA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 NA | |
HL_4V5S_187 | 1/DA/1450A:1461 | No text annotation Not in a motif group | ||
HL_4V5S_188 | 1/DA/1492:1498 | No text annotation Not in a motif group | ||
HL_4V5S_189 | 1/DA/1532:1537 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_70546.2 | |
HL_4V5S_190 | 1/DA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 NA | |
HL_4V5S_191 | 1/DA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 NA | |
HL_4V5S_192 | 1/DA/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 NA | |
HL_4V5S_193 | 1/DA/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 NA | |
HL_4V5S_194 | 1/DA/1719:1743 | No text annotation Not in a motif group | ||
HL_4V5S_195 | 1/DA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 NA | |
HL_4V5S_196 | 1/DA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 NA | |
HL_4V5S_197 | 1/DA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 NA | |
HL_4V5S_198 | 1/DA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 NA | |
HL_4V5S_199 | 1/DA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
HL_4V5S_200 | 1/DA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 NA | |
HL_4V5S_201 | 1/DA/1992:1996 | No text annotation Not in a motif group | ||
HL_4V5S_202 | 1/DA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 NA | |
HL_4V5S_203 | 1/DA/2143:2148 | UNCG Not in a motif group | homologous HL_3U4M_001 HL_29960.1 | |
HL_4V5S_204 | 1/DA/2205:2219 | No text annotation Not in a motif group | geometric HL_5TBW_004 HL_75930.1 | |
HL_4V5S_205 | 1/DA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
HL_4V5S_206 | 1/DA/2264:2276 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.7 | |
HL_4V5S_207 | 1/DA/2303:2313 | No text annotation Not in a motif group | homologous HL_4WF9_051 NA | |
HL_4V5S_208 | 1/DA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 NA | |
HL_4V5S_209 | 1/DA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 NA | |
HL_4V5S_210 | 1/DA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 NA | |
HL_4V5S_211 | 1/DA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 NA | |
HL_4V5S_212 | 1/DA/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 NA | |
HL_4V5S_213 | 1/DA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 NA | |
HL_4V5S_214 | 1/DA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_22584.1 | |
HL_4V5S_215 | 1/DA/2594:2599 | No text annotation Not in a motif group | homologous HL_7A0S_062 HL_85603.1 | |
HL_4V5S_216 | 1/DA/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_85603.1 | |
HL_4V5S_217 | 1/DA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 NA | |
HL_4V5S_218 | 1/DA/2745:2759 | No text annotation Not in a motif group | homologous HL_4WF9_062 HL_56677.8 | |
HL_4V5S_219 | 1/DA/2793:2804 | No text annotation Not in a motif group | ||
HL_4V5S_220 | 1/DA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 NA | |
HL_4V5S_221 | 1/DA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 NA | |
HL_4V5S_222 | 1/DB/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_070 NA | |
HL_4V5S_223 | 1/DB/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4V5S_002 | No text annotation | ||
HL_4V5S_009 | UNCG | ||
HL_4V5S_032 | No text annotation | ||
HL_4V5S_034 | T-loop with 2 stacked bulged bases | ||
HL_4V5S_035 | No text annotation | ||
HL_4V5S_107 | No text annotation | ||
HL_4V5S_113 | No text annotation | ||
HL_4V5S_134 | No text annotation | ||
HL_4V5S_144 | No text annotation | ||
HL_4V5S_146 | T-loop with 2 stacked bulged bases | ||
HL_4V5S_147 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_4V5S_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.4 | |
IL_4V5S_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.7 | |
IL_4V5S_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | geometric IL_4LFB_003 IL_14177.1 | |
IL_4V5S_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_80097.2 | |
IL_4V5S_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
IL_4V5S_006 | 1/AA/67:69, 1/AA/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_86319.3 | |
IL_4V5S_007 | 1/AA/129:131, 1/AA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.3 | |
IL_4V5S_008 | 1/AA/132:136, 1/AA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.4 | |
IL_4V5S_009 | 1/AA/148:153, 1/AA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
IL_4V5S_010 | 1/AA/186:188, 1/AA/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_86319.3 | |
IL_4V5S_011 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.3 | |
IL_4V5S_012 | 1/AA/249:253, 1/AA/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
IL_4V5S_013 | 1/AA/292:293, 1/AA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
IL_4V5S_014 | 1/AA/367:369, 1/AA/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.17 | |
IL_4V5S_015 | 1/AA/371:375, 1/AA/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
IL_4V5S_016 | 1/AA/375:376, 1/AA/387:389 | Single bulged G Not in a motif group | homologous IL_4LFB_016 IL_00225.4 | |
IL_4V5S_017 | 1/AA/409:416, 1/AA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
IL_4V5S_018 | 1/AA/446:450, 1/AA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
IL_4V5S_019 | 1/AA/450:455, 1/AA/476:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
IL_4V5S_020 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.8 | |
IL_4V5S_021 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
IL_4V5S_022 | 1/AA/569:575, 1/AA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.1 | |
IL_4V5S_023 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.2 | |
IL_4V5S_024 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.4 | |
IL_4V5S_025 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.9 | |
IL_4V5S_026 | 1/AA/605:612, 1/AA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
IL_4V5S_027 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.3 | |
IL_4V5S_028 | 1/AA/657:658, 1/AA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.4 | |
IL_4V5S_029 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
IL_4V5S_030 | 1/AA/673:678, 1/AA/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.2 | |
IL_4V5S_031 | 1/AA/683:688, 1/AA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
IL_4V5S_032 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
IL_4V5S_033 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.2 | |
IL_4V5S_034 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
IL_4V5S_035 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.7 | |
IL_4V5S_036 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.4 | |
IL_4V5S_037 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
IL_4V5S_038 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.5 | |
IL_4V5S_039 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform Not in a motif group | homologous IL_4LFB_039 IL_47078.1 | |
IL_4V5S_041 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.17 | |
IL_4V5S_042 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
IL_4V5S_043 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_80097.2 | |
IL_4V5S_044 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.17 | |
IL_4V5S_045 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | homologous IL_5J7L_050 IL_86319.3 | |
IL_4V5S_046 | 1/AA/1124:1128, 1/AA/1143:1149 | No text annotation Not in a motif group | homologous IL_4LFB_048 IL_85222.1 | |
IL_4V5S_047 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
IL_4V5S_048 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
IL_4V5S_049 | 1/AA/1259:1262, 1/AA/1273:1276 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.11 | |
IL_4V5S_050 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
IL_4V5S_051 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
IL_4V5S_052 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
IL_4V5S_053 | 1/AA/1405:1407, 1/AA/1494:1496 | No text annotation Not in a motif group | geometric IL_5MWI_004 IL_86319.3 | |
IL_4V5S_054 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.2 | |
IL_4V5S_055 | 1/AA/1412:1414, 1/AA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_86319.3 | |
IL_4V5S_056 | 1/AA/1416:1420, 1/AA/1480:1484 | No text annotation Not in a motif group | ||
IL_4V5S_057 | 1/AA/1431:1435, 1/AA/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.2 | |
IL_4V5S_058 | 1/AA/1435:1437, 1/AA/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_86319.3 | |
IL_4V5S_059 | 1/AA/1440:1444, 1/AA/1458:1461 | No text annotation Not in a motif group | ||
IL_4V5S_060 | 1/AY/26:28, 1/AY/42:45 | No text annotation Not in a motif group | homologous IL_5E81_376 IL_86319.3 | |
IL_4V5S_061 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 NA | |
IL_4V5S_062 | 1/BA/36:37, 1/BA/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.7 | |
IL_4V5S_063 | 1/BA/42:43, 1/BA/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 NA | |
IL_4V5S_064 | 1/BA/81:85, 1/BA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 NA | |
IL_4V5S_065 | 1/BA/183:184, 1/BA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 NA | |
IL_4V5S_066 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 NA | |
IL_4V5S_067 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 NA | |
IL_4V5S_068 | 1/BA/272D:272E, 1/BA/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 NA | |
IL_4V5S_069 | 1/BA/272J:280, 1/BA/360:363 | No text annotation Not in a motif group | ||
IL_4V5S_070 | 1/BA/280:284, 1/BA/357:360 | tSH-tHW Not in a motif group | geometric IL_7RQB_011 NA | |
IL_4V5S_071 | 1/BA/287:290, 1/BA/350:354 | tSH-tHW Not in a motif group | geometric IL_7RQB_057 NA | |
IL_4V5S_072 | 1/BA/293:295, 1/BA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 NA | |
IL_4V5S_073 | 1/BA/481:484, 1/BA/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 NA | |
IL_4V5S_074 | 1/BA/564:566, 1/BA/575:577 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_86319.3 | |
IL_4V5S_075 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.2 | |
IL_4V5S_076 | 1/BA/672:674, 1/BA/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 NA | |
IL_4V5S_077 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_4WF9_021 IL_17470.7 | |
IL_4V5S_078 | 1/BA/697:698, 1/BA/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 NA | |
IL_4V5S_079 | 1/BA/702:703, 1/BA/728:730 | Single bulged G Not in a motif group | homologous IL_7RQB_020 NA | |
IL_4V5S_080 | 1/BA/703:707, 1/BA/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 NA | |
IL_4V5S_081 | 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 NA | |
IL_4V5S_082 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 NA | |
IL_4V5S_083 | 1/BA/837:838, 1/BA/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 NA | |
IL_4V5S_084 | 1/BA/844:846, 1/BA/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 NA | |
IL_4V5S_085 | 1/BA/846:850, 1/BA/927:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 NA | |
IL_4V5S_086 | 1/BA/857:862, 1/BA/915:920 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
IL_4V5S_087 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform Not in a motif group | homologous IL_7A0S_028 IL_42622.5 | |
IL_4V5S_088 | 1/BA/864:868, 1/BA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 NA | |
IL_4V5S_089 | 1/BA/870:872, 1/BA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 NA | |
IL_4V5S_090 | 1/BA/875:877, 1/BA/899:902 | Minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_031 NA | |
IL_4V5S_091 | 1/BA/877:879, 1/BA/898:899 | Minor groove platform Not in a motif group | geometric IL_7RQB_032 NA | |
IL_4V5S_092 | 1/BA/880:881, 1/BA/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 NA | |
IL_4V5S_093 | 1/BA/952:954, 1/BA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 NA | |
IL_4V5S_094 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 NA | |
IL_4V5S_095 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 NA | |
IL_4V5S_096 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.8 | |
IL_4V5S_097 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.17 | |
IL_4V5S_098 | 1/BA/1018:1024, 1/BA/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.4 | |
IL_4V5S_099 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 NA | |
IL_4V5S_100 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_041 IL_43275.2 | |
IL_4V5S_101 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 NA | |
IL_4V5S_102 | 1/BA/1202:1207, 1/BA/1239:1243 | tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_056 IL_62654.1 | |
IL_4V5S_103 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 NA | |
IL_4V5S_104 | 1/BA/1219:1221, 1/BA/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 NA | |
IL_4V5S_105 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 NA | |
IL_4V5S_106 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 NA | |
IL_4V5S_107 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 NA | |
IL_4V5S_108 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 NA | |
IL_4V5S_109 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 NA | |
IL_4V5S_110 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 NA | |
IL_4V5S_111 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN Not in a motif group | geometric IL_4WF9_051 IL_89002.3 | |
IL_4V5S_112 | 1/BA/1433:1435, 1/BA/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 NA | |
IL_4V5S_113 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 NA | |
IL_4V5S_114 | 1/BA/1448:1450, 1/BA/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 NA | |
IL_4V5S_115 | 1/BA/1469:1473, 1/BA/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 NA | |
IL_4V5S_116 | 1/BA/1481:1482, 1/BA/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 NA | |
IL_4V5S_117 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.7 | |
IL_4V5S_118 | 1/BA/1526:1530, 1/BA/1539:1546 | No text annotation Not in a motif group | ||
IL_4V5S_119 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.3 | |
IL_4V5S_120 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7A0S_060 IL_54997.8 | |
IL_4V5S_121 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 NA | |
IL_4V5S_122 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 NA | |
IL_4V5S_123 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_65969.3 | |
IL_4V5S_124 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 NA | |
IL_4V5S_125 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 NA | |
IL_4V5S_126 | 1/BA/1837:1840, 1/BA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.4 | |
IL_4V5S_127 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.3 | |
IL_4V5S_128 | 1/BA/1846:1849, 1/BA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 NA | |
IL_4V5S_129 | 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7A0S_069 IL_90318.2 | |
IL_4V5S_130 | 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 NA | |
IL_4V5S_131 | 1/BA/1933:1934, 1/BA/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 NA | |
IL_4V5S_132 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
IL_4V5S_133 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 NA | |
IL_4V5S_134 | 1/BA/2054:2057, 1/BA/2611:2615 | No text annotation Not in a motif group | ||
IL_4V5S_135 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 NA | |
IL_4V5S_136 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 NA | |
IL_4V5S_137 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 NA | |
IL_4V5S_138 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 NA | |
IL_4V5S_139 | 1/BA/2120:2123, 1/BA/2174:2177 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.4 | |
IL_4V5S_140 | 1/BA/2123:2127, 1/BA/2161:2174 | No text annotation Not in a motif group | homologous IL_3U4M_003 IL_75283.2 | |
IL_4V5S_141 | 1/BA/2129:2137, 1/BA/2154:2159 | No text annotation Not in a motif group | ||
IL_4V5S_142 | 1/BA/2297:2299, 1/BA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 NA | |
IL_4V5S_143 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 NA | |
IL_4V5S_144 | 1/BA/2401:2403, 1/BA/2414:2415 | Single bulged U Not in a motif group | homologous IL_5J7L_334 IL_83039.17 | |
IL_4V5S_145 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend Not in a motif group | homologous IL_7RQB_091 NA | |
IL_4V5S_146 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform Not in a motif group | geometric IL_7RQB_092 NA | |
IL_4V5S_147 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.4 | |
IL_4V5S_148 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 NA | |
IL_4V5S_149 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 NA | |
IL_4V5S_150 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7A0S_088 IL_76223.3 | |
IL_4V5S_151 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 NA | |
IL_4V5S_152 | 1/BA/2512:2513, 1/BA/2571:2574 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 NA | |
IL_4V5S_153 | 1/BA/2522:2523, 1/BA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 NA | |
IL_4V5S_154 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 NA | |
IL_4V5S_155 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 NA | |
IL_4V5S_156 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 NA | |
IL_4V5S_157 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 NA | |
IL_4V5S_158 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 NA | |
IL_4V5S_159 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 NA | |
IL_4V5S_160 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 NA | |
IL_4V5S_161 | 1/BA/2838:2839, 1/BA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 NA | |
IL_4V5S_162 | 1/BA/2843:2846, 1/BA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 NA | |
IL_4V5S_163 | 1/BA/2847:2852, 1/BA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 NA | |
IL_4V5S_164 | 1/BB/16:18, 1/BB/65:68 | No text annotation Not in a motif group | ||
IL_4V5S_165 | 1/BB/23:28, 1/BB/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
IL_4V5S_166 | 1/BB/30:32, 1/BB/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
IL_4V5S_167 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 NA | |
IL_4V5S_168 | 1/BB/71:79, 1/BB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 NA | |
IL_4V5S_169 | 1/CA/30:32, 1/CA/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.4 | |
IL_4V5S_170 | 1/CA/44:45, 1/CA/396:398 | Single bulged A Not in a motif group | homologous IL_6CZR_114 IL_37497.7 | |
IL_4V5S_171 | 1/CA/47:52, 1/CA/359:361 | No text annotation Not in a motif group | geometric IL_4LFB_003 IL_14177.1 | |
IL_4V5S_172 | 1/CA/54:56, 1/CA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_80097.2 | |
IL_4V5S_173 | 1/CA/63:66, 1/CA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
IL_4V5S_174 | 1/CA/67:69, 1/CA/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_86319.3 | |
IL_4V5S_175 | 1/CA/129:131, 1/CA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.3 | |
IL_4V5S_176 | 1/CA/132:136, 1/CA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.4 | |
IL_4V5S_177 | 1/CA/148:153, 1/CA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
IL_4V5S_178 | 1/CA/186:188, 1/CA/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_86319.3 | |
IL_4V5S_179 | 1/CA/242:247, 1/CA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.3 | |
IL_4V5S_180 | 1/CA/249:253, 1/CA/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
IL_4V5S_181 | 1/CA/292:293, 1/CA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
IL_4V5S_182 | 1/CA/367:369, 1/CA/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.17 | |
IL_4V5S_183 | 1/CA/371:375, 1/CA/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
IL_4V5S_184 | 1/CA/375:376, 1/CA/387:389 | Single bulged G Not in a motif group | geometric IL_4LFB_016 IL_00225.4 | |
IL_4V5S_185 | 1/CA/409:416, 1/CA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
IL_4V5S_186 | 1/CA/446:450, 1/CA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
IL_4V5S_187 | 1/CA/450:455, 1/CA/476:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
IL_4V5S_188 | 1/CA/504:511, 1/CA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.8 | |
IL_4V5S_189 | 1/CA/515:521, 1/CA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
IL_4V5S_190 | 1/CA/569:575, 1/CA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.1 | |
IL_4V5S_191 | 1/CA/580:584, 1/CA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_135 IL_17136.2 | |
IL_4V5S_192 | 1/CA/594:596, 1/CA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.4 | |
IL_4V5S_193 | 1/CA/597:598, 1/CA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.9 | |
IL_4V5S_194 | 1/CA/605:612, 1/CA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
IL_4V5S_195 | 1/CA/654:655, 1/CA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.3 | |
IL_4V5S_196 | 1/CA/657:658, 1/CA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.4 | |
IL_4V5S_197 | 1/CA/662:666, 1/CA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
IL_4V5S_198 | 1/CA/673:678, 1/CA/712:717 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.2 | |
IL_4V5S_199 | 1/CA/683:688, 1/CA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
IL_4V5S_200 | 1/CA/774:778, 1/CA/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
IL_4V5S_201 | 1/CA/779:783, 1/CA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.2 | |
IL_4V5S_202 | 1/CA/887:894, 1/CA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
IL_4V5S_203 | 1/CA/922:923, 1/CA/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.7 | |
IL_4V5S_204 | 1/CA/925:927, 1/CA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.4 | |
IL_4V5S_205 | 1/CA/933:935, 1/CA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
IL_4V5S_206 | 1/CA/952:954, 1/CA/1226:1229 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4WF9_003 IL_65006.1 | |
IL_4V5S_207 | 1/CA/993:999, 1/CA/1042:1045 | No text annotation Not in a motif group | ||
IL_4V5S_208 | 1/CA/1048:1050, 1/CA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.17 | |
IL_4V5S_209 | 1/CA/1052:1056, 1/CA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
IL_4V5S_210 | 1/CA/1057:1058, 1/CA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_80097.2 | |
IL_4V5S_211 | 1/CA/1060:1061, 1/CA/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.17 | |
IL_4V5S_212 | 1/CA/1061:1063, 1/CA/1193:1195 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_86319.3 | |
IL_4V5S_213 | 1/CA/1122:1128, 1/CA/1143:1151 | No text annotation Not in a motif group | ||
IL_4V5S_214 | 1/CA/1247:1253, 1/CA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
IL_4V5S_215 | 1/CA/1255:1258, 1/CA/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
IL_4V5S_216 | 1/CA/1259:1262, 1/CA/1273:1276 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.11 | |
IL_4V5S_217 | 1/CA/1303:1308, 1/CA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
IL_4V5S_218 | 1/CA/1399:1401, 1/CA/1501:1504 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
IL_4V5S_219 | 1/CA/1401:1404, 1/CA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
IL_4V5S_220 | 1/CA/1405:1407, 1/CA/1494:1496 | No text annotation Not in a motif group | geometric IL_5MWI_007 IL_86319.3 | |
IL_4V5S_221 | 1/CA/1407:1409, 1/CA/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.2 | |
IL_4V5S_222 | 1/CA/1412:1414, 1/CA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_86319.3 | |
IL_4V5S_223 | 1/CA/1416:1419, 1/CA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.11 | |
IL_4V5S_224 | 1/CA/1431:1435, 1/CA/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.2 | |
IL_4V5S_225 | 1/CA/1435:1437, 1/CA/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_86319.3 | |
IL_4V5S_226 | 1/CA/1440:1443, 1/CA/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.3 | |
IL_4V5S_227 | 1/CY/26:28, 1/CY/42:45 | No text annotation Not in a motif group | homologous IL_5E81_376 IL_86319.3 | |
IL_4V5S_228 | 1/DA/24:30, 1/DA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 NA | |
IL_4V5S_229 | 1/DA/36:37, 1/DA/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.7 | |
IL_4V5S_230 | 1/DA/42:43, 1/DA/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 NA | |
IL_4V5S_231 | 1/DA/81:85, 1/DA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 NA | |
IL_4V5S_232 | 1/DA/183:184, 1/DA/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.5 | |
IL_4V5S_233 | 1/DA/188:194, 1/DA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 NA | |
IL_4V5S_234 | 1/DA/239:245, 1/DA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 NA | |
IL_4V5S_235 | 1/DA/272D:272E, 1/DA/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 NA | |
IL_4V5S_236 | 1/DA/272J:280, 1/DA/360:363 | No text annotation Not in a motif group | ||
IL_4V5S_237 | 1/DA/280:284, 1/DA/357:360 | tSH-tHW Not in a motif group | geometric IL_7RQB_011 NA | |
IL_4V5S_238 | 1/DA/287:290, 1/DA/350:354 | No text annotation Not in a motif group | ||
IL_4V5S_239 | 1/DA/293:295, 1/DA/343:347 | No text annotation Not in a motif group | ||
IL_4V5S_240 | 1/DA/481:484, 1/DA/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 NA | |
IL_4V5S_241 | 1/DA/564:566, 1/DA/575:577 | No text annotation Not in a motif group | homologous IL_4WF9_017 IL_86319.3 | |
IL_4V5S_242 | 1/DA/606:610, 1/DA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.2 | |
IL_4V5S_243 | 1/DA/672:674, 1/DA/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 NA | |
IL_4V5S_244 | 1/DA/674:678, 1/DA/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_4WF9_021 IL_17470.7 | |
IL_4V5S_245 | 1/DA/697:698, 1/DA/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 NA | |
IL_4V5S_246 | 1/DA/702:703, 1/DA/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 NA | |
IL_4V5S_247 | 1/DA/703:707, 1/DA/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 NA | |
IL_4V5S_248 | 1/DA/738:741, 1/DA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 NA | |
IL_4V5S_249 | 1/DA/775:777, 1/DA/787:791 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 NA | |
IL_4V5S_250 | 1/DA/837:838, 1/DA/940:942 | Single stack bend Not in a motif group | homologous IL_5J7L_266 IL_92001.2 | |
IL_4V5S_251 | 1/DA/844:846, 1/DA/931:934 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 NA | |
IL_4V5S_252 | 1/DA/846:850, 1/DA/927:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 NA | |
IL_4V5S_253 | 1/DA/857:862, 1/DA/915:920 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7A0S_027 IL_81631.1 | |
IL_4V5S_254 | 1/DA/862:863, 1/DA/913:915 | Minor groove platform Not in a motif group | geometric IL_4V9F_034 IL_42622.5 | |
IL_4V5S_255 | 1/DA/864:868, 1/DA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 NA | |
IL_4V5S_256 | 1/DA/875:877, 1/DA/899:902 | Minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_031 NA | |
IL_4V5S_257 | 1/DA/877:879, 1/DA/898:899 | Minor groove platform Not in a motif group | geometric IL_7RQB_032 NA | |
IL_4V5S_258 | 1/DA/880:881, 1/DA/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 NA | |
IL_4V5S_259 | 1/DA/952:954, 1/DA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 NA | |
IL_4V5S_260 | 1/DA/994:996, 1/DA/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 NA | |
IL_4V5S_261 | 1/DA/998:1002, 1/DA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 NA | |
IL_4V5S_262 | 1/DA/1004:1011, 1/DA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.8 | |
IL_4V5S_263 | 1/DA/1011:1013, 1/DA/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.17 | |
IL_4V5S_264 | 1/DA/1018:1024, 1/DA/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.4 | |
IL_4V5S_265 | 1/DA/1024:1030, 1/DA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 NA | |
IL_4V5S_266 | 1/DA/1031:1034, 1/DA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 NA | |
IL_4V5S_267 | 1/DA/1196:1198, 1/DA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.5 | |
IL_4V5S_268 | 1/DA/1202:1207, 1/DA/1239:1243 | tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_056 IL_62654.1 | |
IL_4V5S_269 | 1/DA/1208:1215, 1/DA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 NA | |
IL_4V5S_270 | 1/DA/1219:1221, 1/DA/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 NA | |
IL_4V5S_271 | 1/DA/1262:1269, 1/DA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 NA | |
IL_4V5S_272 | 1/DA/1310:1313, 1/DA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.3 | |
IL_4V5S_273 | 1/DA/1319:1323, 1/DA/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 NA | |
IL_4V5S_274 | 1/DA/1351:1355, 1/DA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 NA | |
IL_4V5S_275 | 1/DA/1357:1361, 1/DA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 NA | |
IL_4V5S_276 | 1/DA/1415:1416, 1/DA/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 NA | |
IL_4V5S_277 | 1/DA/1417:1421, 1/DA/1577:1581 | UAA/GAN Not in a motif group | geometric IL_4WF9_051 IL_89002.3 | |
IL_4V5S_278 | 1/DA/1433:1435, 1/DA/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 NA | |
IL_4V5S_279 | 1/DA/1437:1440, 1/DA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 NA | |
IL_4V5S_280 | 1/DA/1448:1450, 1/DA/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 NA | |
IL_4V5S_281 | 1/DA/1469:1473, 1/DA/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 NA | |
IL_4V5S_282 | 1/DA/1481:1482, 1/DA/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 NA | |
IL_4V5S_283 | 1/DA/1489:1491, 1/DA/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.7 | |
IL_4V5S_284 | 1/DA/1526:1530, 1/DA/1539:1546 | No text annotation Not in a motif group | ||
IL_4V5S_285 | 1/DA/1651:1656, 1/DA/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.3 | |
IL_4V5S_286 | 1/DA/1686:1691, 1/DA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_65969.3 | |
IL_4V5S_287 | 1/DA/1770:1771, 1/DA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 NA | |
IL_4V5S_288 | 1/DA/1798:1804, 1/DA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 NA | |
IL_4V5S_289 | 1/DA/1837:1840, 1/DA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.4 | |
IL_4V5S_290 | 1/DA/1841:1842, 1/DA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.3 | |
IL_4V5S_291 | 1/DA/1846:1849, 1/DA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 NA | |
IL_4V5S_292 | 1/DA/1851:1855, 1/DA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7A0S_069 IL_90318.2 | |
IL_4V5S_293 | 1/DA/1856:1860, 1/DA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 NA | |
IL_4V5S_294 | 1/DA/1933:1934, 1/DA/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 NA | |
IL_4V5S_295 | 1/DA/1934:1945, 1/DA/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
IL_4V5S_296 | 1/DA/2050:2052, 1/DA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 NA | |
IL_4V5S_297 | 1/DA/2054:2057, 1/DA/2611:2615 | No text annotation Not in a motif group | ||
IL_4V5S_298 | 1/DA/2067:2069, 1/DA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 NA | |
IL_4V5S_299 | 1/DA/2070:2071, 1/DA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_4WF9_081 IL_42622.5 | |
IL_4V5S_300 | 1/DA/2081:2083, 1/DA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 NA | |
IL_4V5S_301 | 1/DA/2085:2087, 1/DA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 NA | |
IL_4V5S_302 | 1/DA/2120:2123, 1/DA/2174:2177 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.4 | |
IL_4V5S_303 | 1/DA/2123:2127, 1/DA/2161:2174 | No text annotation Not in a motif group | homologous IL_3U4M_003 IL_75283.2 | |
IL_4V5S_304 | 1/DA/2129:2137, 1/DA/2154:2159 | No text annotation Not in a motif group | ||
IL_4V5S_305 | 1/DA/2297:2299, 1/DA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 NA | |
IL_4V5S_306 | 1/DA/2350:2353, 1/DA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 NA | |
IL_4V5S_307 | 1/DA/2401:2403, 1/DA/2414:2415 | Single bulged U Not in a motif group | homologous IL_5J7L_334 IL_83039.17 | |
IL_4V5S_308 | 1/DA/2453:2454, 1/DA/2498:2500 | Single stack bend Not in a motif group | homologous IL_7RQB_091 NA | |
IL_4V5S_309 | 1/DA/2454:2455, 1/DA/2496:2498 | Major groove platform Not in a motif group | geometric IL_7RQB_092 NA | |
IL_4V5S_310 | 1/DA/2457:2459, 1/DA/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.4 | |
IL_4V5S_311 | 1/DA/2459:2461, 1/DA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 NA | |
IL_4V5S_312 | 1/DA/2466:2470, 1/DA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 NA | |
IL_4V5S_313 | 1/DA/2507:2508, 1/DA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7A0S_088 IL_76223.3 | |
IL_4V5S_314 | 1/DA/2510:2512, 1/DA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 NA | |
IL_4V5S_315 | 1/DA/2512:2513, 1/DA/2571:2574 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 NA | |
IL_4V5S_316 | 1/DA/2522:2523, 1/DA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 NA | |
IL_4V5S_317 | 1/DA/2591:2592, 1/DA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 NA | |
IL_4V5S_318 | 1/DA/2636:2640, 1/DA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 NA | |
IL_4V5S_319 | 1/DA/2652:2658, 1/DA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7A0S_094 IL_16458.2 | |
IL_4V5S_320 | 1/DA/2680:2684, 1/DA/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 NA | |
IL_4V5S_321 | 1/DA/2687:2691, 1/DA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 NA | |
IL_4V5S_322 | 1/DA/2695:2696, 1/DA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 NA | |
IL_4V5S_323 | 1/DA/2737:2742, 1/DA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 NA | |
IL_4V5S_324 | 1/DA/2838:2839, 1/DA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 NA | |
IL_4V5S_325 | 1/DA/2843:2846, 1/DA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 NA | |
IL_4V5S_326 | 1/DA/2847:2852, 1/DA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 NA | |
IL_4V5S_327 | 1/DB/16:18, 1/DB/65:68 | No text annotation Not in a motif group | ||
IL_4V5S_328 | 1/DB/23:28, 1/DB/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
IL_4V5S_329 | 1/DB/30:32, 1/DB/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
IL_4V5S_330 | 1/DB/34:38, 1/DB/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 NA | |
IL_4V5S_331 | 1/DB/71:79, 1/DB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_4V5S_040 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_4V5S_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
J3_4V5S_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
J3_4V5S_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation Not in a motif group | homologous J3_6CZR_017 NA | |
J3_4V5S_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
J3_4V5S_005 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
J3_4V5S_006 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
J3_4V5S_007 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation Not in a motif group | ||
J3_4V5S_008 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
J3_4V5S_009 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation Not in a motif group | ||
J3_4V5S_010 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
J3_4V5S_011 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation Not in a motif group | ||
J3_4V5S_012 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
J3_4V5S_013 | 1/BA/30:31, 1/BA/474:481, 1/BA/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
J3_4V5S_014 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
J3_4V5S_015 | 1/BA/269:271B, 1/BA/271V:272B, 1/BA/366:370 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
J3_4V5S_016 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
J3_4V5S_017 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation Not in a motif group | homologous J3_7A0S_005 NA | |
J3_4V5S_018 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
J3_4V5S_019 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
J3_4V5S_020 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
J3_4V5S_021 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
J3_4V5S_022 | 1/BA/2295:2297, 1/BA/2321:2323, 1/BA/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
J3_4V5S_023 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation Not in a motif group | ||
J3_4V5S_024 | 1/BA/2814:2815, 1/BA/2831:2836, 1/BA/2882:2886 | No text annotation Not in a motif group | ||
J3_4V5S_025 | 1/BB/11:16, 1/BB/68:70, 1/BB/107:110 | No text annotation Not in a motif group | ||
J3_4V5S_026 | 1/CA/46:47, 1/CA/361:367, 1/CA/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
J3_4V5S_027 | 1/CA/586:588, 1/CA/651:654, 1/CA/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
J3_4V5S_028 | 1/CA/672:673, 1/CA/717:725, 1/CA/732:734 | No text annotation Not in a motif group | homologous J3_6CZR_017 NA | |
J3_4V5S_029 | 1/CA/826:829, 1/CA/857:861, 1/CA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
J3_4V5S_030 | 1/CA/936:939, 1/CA/1344:1350, 1/CA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
J3_4V5S_031 | 1/CA/943:946, 1/CA/1235:1237, 1/CA/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
J3_4V5S_032 | 1/CA/955:962, 1/CA/973:985, 1/CA/1220:1225 | No text annotation Not in a motif group | ||
J3_4V5S_033 | 1/CA/990:993, 1/CA/1045:1047, 1/CA/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
J3_4V5S_035 | 1/CA/1063:1068, 1/CA/1107:1113, 1/CA/1187:1193 | No text annotation Not in a motif group | ||
J3_4V5S_036 | 1/CA/1073:1074, 1/CA/1083:1087, 1/CA/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
J3_4V5S_037 | 1/CA/1116:1118, 1/CA/1155:1161, 1/CA/1175:1184 | No text annotation Not in a motif group | ||
J3_4V5S_038 | 1/CA/1237:1241, 1/CA/1296:1303, 1/CA/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
J3_4V5S_039 | 1/DA/30:31, 1/DA/474:481, 1/DA/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
J3_4V5S_040 | 1/DA/56:57, 1/DA/70:76, 1/DA/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
J3_4V5S_041 | 1/DA/269:271B, 1/DA/271V:272B, 1/DA/366:370 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
J3_4V5S_042 | 1/DA/683:689, 1/DA/773:775, 1/DA/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
J3_4V5S_043 | 1/DA/698:700, 1/DA/732:736, 1/DA/760:763 | No text annotation Not in a motif group | homologous J3_7A0S_005 NA | |
J3_4V5S_044 | 1/DA/1298:1303, 1/DA/1625:1627, 1/DA/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
J3_4V5S_045 | 1/DA/1306:1309, 1/DA/1605:1611, 1/DA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
J3_4V5S_046 | 1/DA/1344:1350, 1/DA/1381:1385, 1/DA/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
J3_4V5S_047 | 1/DA/1663:1674, 1/DA/1990:1992, 1/DA/1996:1997 | No text annotation Not in a motif group | ||
J3_4V5S_048 | 1/DA/2091:2093, 1/DA/2196:2200, 1/DA/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
J3_4V5S_049 | 1/DA/2295:2297, 1/DA/2321:2323, 1/DA/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
J3_4V5S_050 | 1/DA/2517:2520, 1/DA/2545:2547, 1/DA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
J3_4V5S_051 | 1/DA/2814:2815, 1/DA/2831:2836, 1/DA/2882:2886 | No text annotation Not in a motif group | ||
J3_4V5S_052 | 1/DB/11:16, 1/DB/68:70, 1/DB/107:110 | No text annotation Not in a motif group |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_4V5S_034 | No text annotation |
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