5V8I | Motifs

206 Hairpin loops
345 Internal loops
54 Junction loops

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	HL_5V8I_001	1/1A/59:68	homologous HL_7RQB_001	NA HL_29414.1*
2	HL_5V8I_002	1/1A/87:95	homologous HL_7RQB_002	NA HL_17926.5*
3	HL_5V8I_003	1/1A/123:128	homologous HL_7RQB_003	NA HL_62869.3*
4	HL_5V8I_004	1/1A/139:142A	homologous HL_7RQB_004	NA HL_86069.1*
5	HL_5V8I_005	1/1A/194:201	geometric HL_7RQB_006	NA HL_23481.5*
6	HL_5V8I_006	1/1A/225:230	homologous HL_7RQB_007	NA HL_06569.2*
7	HL_5V8I_007	1/1A/246:252	homologous HL_7RQB_008	NA HL_67216.5*
8	HL_5V8I_008	1/1A/271I:271O	geometric HL_5J7L_018	NA HL_93229.1*
9	HL_5V8I_009	1/1A/305:312	homologous HL_7RQB_010	NA HL_68493.6*
10	HL_5V8I_010	1/1A/319:323	homologous HL_7RQB_011	NA HL_98557.5*
11	HL_5V8I_011	1/1A/327:335	homologous HL_7RQB_012	NA HL_08002.6*
12	HL_5V8I_012	1/1A/382:392	homologous HL_7RQB_013	NA HL_91503.3*
13	HL_5V8I_013	1/1A/410:417	homologous HL_7RQB_014	NA HL_32512.8*
14	HL_5V8I_014	1/1A/462:467	homologous HL_7RQB_015	NA HL_43074.18*
15	HL_5V8I_015	1/1A/487:493	homologous HL_7RQB_016	NA HL_43074.18*
16	HL_5V8I_017	1/1A/566:575	homologous HL_7RQB_018	NA HL_33239.17*
17	HL_5V8I_018	1/1A/612:615	homologous HL_7RQB_019	NA HL_49196.4*
18	HL_5V8I_019	1/1A/629:634	homologous HL_7RQB_020	NA HL_43074.18*
19	HL_5V8I_020	1/1A/641:647	homologous HL_7RQB_021	NA HL_02361.6*
20	HL_5V8I_021	1/1A/712:719	homologous HL_7RQB_022	NA HL_93727.5*
21	HL_5V8I_022	1/1A/744:753	homologous HL_7RQB_023	NA HL_39334.5*
22	HL_5V8I_023	1/1A/779:785	homologous HL_7RQB_024	NA HL_16898.3*
23	HL_5V8I_024	1/1A/826:831	homologous HL_7RQB_025	NA HL_15942.5*
24	HL_5V8I_025	1/1A/884:892	homologous HL_7RQB_026	NA HL_24454.1*
25	HL_5V8I_026	1/1A/955:962	homologous HL_7RQB_027	NA HL_43074.18*
26	HL_5V8I_027	1/1A/978:985	homologous HL_7RQB_028	NA HL_72451.5*
27	HL_5V8I_028	1/1A/1059:1079	NA	NA
28	HL_5V8I_029	1/1A/1092:1099	homologous HL_7RQB_030	NA
29	HL_5V8I_030	1/1A/1171:1178	homologous HL_7RQB_031	NA HL_01253.1*
30	HL_5V8I_031	1/1A/1222:1227	homologous HL_7RQB_032	NA HL_43074.18*
31	HL_5V8I_032	1/1A/1281:1289	homologous HL_7RQB_033	NA HL_33239.17*
32	HL_5V8I_033	1/1A/1324:1330	homologous HL_7RQB_034	NA HL_86880.5*
33	HL_5V8I_034	1/1A/1363:1368	homologous HL_7RQB_035	NA HL_43074.18*
34	HL_5V8I_035	1/1A/1389:1398	homologous HL_7RQB_036	NA HL_78457.4*
35	HL_5V8I_036	1/1A/1451:1459	homologous HL_7RQB_037	NA HL_71540.1*
36	HL_5V8I_037	1/1A/1492:1498	homologous HL_7RQB_038	NA HL_86880.5*
37	HL_5V8I_038	1/1A/1565:1568	homologous HL_7RQB_039	NA HL_69353.7*
38	HL_5V8I_039	1/1A/1612:1619	homologous HL_7RQB_040	NA HL_66171.3*
39	HL_5V8I_040	1/1A/1631:1635	homologous HL_7RQB_041	NA HL_86880.5*
40	HL_5V8I_041	1/1A/1691:1696	homologous HL_7RQB_042	NA HL_79299.11*
41	HL_5V8I_042	1/1A/1720:1742	homologous HL_7RQB_043	NA HL_49638.1*
42	HL_5V8I_043	1/1A/1752:1756	homologous HL_7RQB_044	NA HL_79272.3*
43	HL_5V8I_044	1/1A/1777:1787	homologous HL_7RQB_045	NA HL_43613.4*
44	HL_5V8I_045	1/1A/1806:1811	homologous HL_7RQB_046	NA HL_43074.18*
45	HL_5V8I_046	1/1A/1864:1878	homologous HL_7RQB_047	NA HL_43074.18*
46	HL_5V8I_047	1/1A/1909:1921	homologous HL_7RQB_048	NA
47	HL_5V8I_048	1/1A/1949:1957	homologous HL_7RQB_049	NA HL_53760.4*
48	HL_5V8I_049	1/1A/2027:2036	homologous HL_7RQB_050	NA HL_90642.5*
49	HL_5V8I_051	1/1A/2205:2219	homologous HL_7RQB_052	NA HL_82131.1*
50	HL_5V8I_052	1/1A/2248:2256	homologous HL_7RQB_053	NA
51	HL_5V8I_053	1/1A/2264:2276	homologous HL_7RQB_054	NA HL_19870.5*
52	HL_5V8I_054	1/1A/2303:2313	homologous HL_7RQB_055	NA HL_11805.3*
53	HL_5V8I_055	1/1A/2324:2331	homologous HL_7RQB_056	NA HL_46142.8*
54	HL_5V8I_056	1/1A/2355:2362	homologous HL_7RQB_057	NA HL_93727.5*
55	HL_5V8I_057	1/1A/2374:2379	homologous HL_7RQB_058	NA HL_43074.18*
56	HL_5V8I_058	1/1A/2404:2413	homologous HL_7RQB_059	NA HL_48376.4*
57	HL_5V8I_059	1/1A/2471:2479	homologous HL_7RQB_060	NA HL_36421.5*
58	HL_5V8I_060	1/1A/2528:2535	homologous HL_7RQB_061	NA HL_92681.5*
59	HL_5V8I_061	1/1A/2551:2557	homologous HL_7RQB_062	NA
60	HL_5V8I_062	1/1A/2594:2599	homologous HL_7RQB_063	NA HL_43074.18*
61	HL_5V8I_063	1/1A/2658:2663	homologous HL_7RQB_064	NA HL_43074.18*
62	HL_5V8I_064	1/1A/2701:2706	homologous HL_7RQB_065	NA HL_31583.1*
63	HL_5V8I_065	1/1A/2745:2759	homologous HL_7RQB_066	NA HL_56677.5*
64	HL_5V8I_067	1/1A/2819:2827	homologous HL_7RQB_068	NA HL_05018.6*
65	HL_5V8I_068	1/1A/2856:2861	homologous HL_7RQB_069	NA HL_43074.18*
66	HL_5V8I_069	1/1B/38:44	NA	NA
67	HL_5V8I_070	1/1B/86:91	NA	NA
68	HL_5V8I_071	1/1a/12:22	NA	NA
69	HL_5V8I_073	1/1a/158:163	NA	NA
70	HL_5V8I_074	1/1a/189C:189H	NA	NA
71	HL_5V8I_075	1/1a/200:217	NA	NA
72	HL_5V8I_076	1/1a/259:267	NA	NA
73	HL_5V8I_077	1/1a/296:301	NA	NA
74	HL_5V8I_078	1/1a/320:333	NA	NA
75	HL_5V8I_079	1/1a/342:347	NA	NA
76	HL_5V8I_080	1/1a/379:384	NA	NA
77	HL_5V8I_081	1/1a/419:424	NA	NA
78	HL_5V8I_082	1/1a/458:473	NA	NA
79	HL_5V8I_083	1/1a/521:528	NA	NA
80	HL_5V8I_084	1/1a/617:623	NA	NA
81	HL_5V8I_085	1/1a/689:698	NA	NA
82	HL_5V8I_086	1/1a/726:731	NA	NA
83	HL_5V8I_087	1/1a/786:796	NA	NA
84	HL_5V8I_088	1/1a/838:848	NA	NA
85	HL_5V8I_089	1/1a/862:867	NA	NA
86	HL_5V8I_090	1/1a/897:902	NA	NA
87	HL_5V8I_091	1/1a/963:972	NA	NA
88	HL_5V8I_092	1/1a/1012:1017	NA	NA
89	HL_5V8I_093	1/1a/1029:1032	NA	NA
90	HL_5V8I_094	1/1a/1076:1081	NA	NA
91	HL_5V8I_095	1/1a/1089:1096	NA	NA
92	HL_5V8I_096	1/1a/1134:1140	NA	NA
93	HL_5V8I_097	1/1a/1165:1171	NA	NA
94	HL_5V8I_098	1/1a/1265:1270	NA	NA
95	HL_5V8I_099	1/1a/1314:1323	NA	NA
96	HL_5V8I_100	1/1a/1356:1366	NA	NA
97	HL_5V8I_101	1/1a/1445:1457	NA	NA
98	HL_5V8I_102	1/1a/1515:1520	NA	NA
99	HL_5V8I_103	1/2A/59:68	homologous HL_7RQB_001	NA HL_29414.1*
100	HL_5V8I_104	1/2A/87:95	homologous HL_7RQB_002	NA HL_17926.5*
101	HL_5V8I_105	1/2A/123:128	homologous HL_7RQB_003	NA HL_62869.3*
102	HL_5V8I_106	1/2A/139:142A	homologous HL_7RQB_004	NA HL_86069.1*
103	HL_5V8I_108	1/2A/194:201	geometric HL_5J7L_139	NA HL_23481.5*
104	HL_5V8I_109	1/2A/225:230	homologous HL_7RQB_007	NA HL_06569.2*
105	HL_5V8I_110	1/2A/246:252	homologous HL_7RQB_008	NA HL_67216.5*
106	HL_5V8I_111	1/2A/271I:271O	Other HL geometric HL_5J7L_200	NA HL_96776.3*
107	HL_5V8I_112	1/2A/305:312	homologous HL_7RQB_010	NA HL_68493.6*
108	HL_5V8I_113	1/2A/319:323	homologous HL_7RQB_011	NA HL_98557.5*
109	HL_5V8I_114	1/2A/327:335	homologous HL_7RQB_012	NA HL_08002.6*
110	HL_5V8I_115	1/2A/382:392	homologous HL_7RQB_013	NA HL_91503.3*
111	HL_5V8I_116	1/2A/410:417	homologous HL_7RQB_014	NA HL_32512.8*
112	HL_5V8I_117	1/2A/462:467	homologous HL_7RQB_015	NA HL_43074.18*
113	HL_5V8I_118	1/2A/487:493	homologous HL_7RQB_016	NA HL_43074.18*
114	HL_5V8I_120	1/2A/566:575	geometric HL_7RQB_018	NA HL_33239.17*
115	HL_5V8I_121	1/2A/612:615	homologous HL_7RQB_019	NA HL_49196.4*
116	HL_5V8I_122	1/2A/629:634	homologous HL_7RQB_020	NA HL_43074.18*
117	HL_5V8I_123	1/2A/641:647	homologous HL_7RQB_021	NA HL_02361.6*
118	HL_5V8I_124	1/2A/712:719	homologous HL_7RQB_022	NA HL_93727.5*
119	HL_5V8I_125	1/2A/744:753	homologous HL_7RQB_023	NA HL_39334.5*
120	HL_5V8I_126	1/2A/779:785	homologous HL_7RQB_024	NA HL_16898.3*
121	HL_5V8I_127	1/2A/826:831	homologous HL_7RQB_025	NA HL_15942.5*
122	HL_5V8I_128	1/2A/884:892	homologous HL_7RQB_026	NA HL_24454.1*
123	HL_5V8I_129	1/2A/955:962	homologous HL_7RQB_027	NA HL_43074.18*
124	HL_5V8I_130	1/2A/978:985	homologous HL_7RQB_028	NA HL_72451.5*
125	HL_5V8I_131	1/2A/1063:1075	NA	NA
126	HL_5V8I_132	1/2A/1091:1100	NA	NA
127	HL_5V8I_134	1/2A/1222:1227	homologous HL_7RQB_032	NA HL_43074.18*
128	HL_5V8I_135	1/2A/1281:1289	homologous HL_7RQB_033	NA HL_33239.17*
129	HL_5V8I_136	1/2A/1324:1330	homologous HL_7RQB_034	NA HL_86880.5*
130	HL_5V8I_137	1/2A/1363:1368	homologous HL_7RQB_035	NA HL_43074.18*
131	HL_5V8I_138	1/2A/1389:1398	homologous HL_7RQB_036	NA HL_78457.4*
132	HL_5V8I_139	1/2A/1451:1459	geometric HL_7RQB_037	NA HL_71540.1*
133	HL_5V8I_140	1/2A/1492:1498	homologous HL_7RQB_038	NA HL_86880.5*
134	HL_5V8I_142	1/2A/1565:1568	homologous HL_7RQB_039	NA HL_69353.7*
135	HL_5V8I_143	1/2A/1612:1619	homologous HL_7RQB_040	NA HL_66171.3*
136	HL_5V8I_144	1/2A/1631:1635	homologous HL_7RQB_041	NA HL_86880.5*
137	HL_5V8I_145	1/2A/1691:1696	homologous HL_7RQB_042	NA HL_79299.11*
138	HL_5V8I_146	1/2A/1720:1742	homologous HL_7RQB_043	NA HL_49638.1*
139	HL_5V8I_147	1/2A/1752:1756	homologous HL_7RQB_044	NA HL_79272.3*
140	HL_5V8I_148	1/2A/1777:1787	homologous HL_7RQB_045	NA HL_43613.4*
141	HL_5V8I_149	1/2A/1806:1811	homologous HL_7RQB_046	NA HL_43074.18*
142	HL_5V8I_150	1/2A/1864:1878	homologous HL_7RQB_047	NA HL_43074.18*
143	HL_5V8I_151	1/2A/1909:1921	homologous HL_7RQB_048	NA
144	HL_5V8I_152	1/2A/1949:1957	homologous HL_7RQB_049	NA HL_53760.4*
145	HL_5V8I_153	1/2A/2027:2036	homologous HL_7RQB_050	NA HL_90642.5*
146	HL_5V8I_155	1/2A/2205:2219	homologous HL_7RQB_052	NA HL_82131.1*
147	HL_5V8I_156	1/2A/2248:2256	homologous HL_7RQB_053	NA
148	HL_5V8I_157	1/2A/2264:2276	homologous HL_7RQB_054	NA HL_19870.5*
149	HL_5V8I_158	1/2A/2303:2313	homologous HL_7RQB_055	NA HL_11805.3*
150	HL_5V8I_159	1/2A/2324:2331	homologous HL_7RQB_056	NA HL_46142.8*
151	HL_5V8I_160	1/2A/2355:2362	homologous HL_7RQB_057	NA HL_93727.5*
152	HL_5V8I_161	1/2A/2374:2379	homologous HL_7RQB_058	NA HL_43074.18*
153	HL_5V8I_162	1/2A/2404:2413	homologous HL_7RQB_059	NA HL_48376.4*
154	HL_5V8I_163	1/2A/2471:2479	homologous HL_7RQB_060	NA HL_36421.5*
155	HL_5V8I_164	1/2A/2528:2535	homologous HL_7RQB_061	NA HL_92681.5*
156	HL_5V8I_165	1/2A/2551:2557	homologous HL_7RQB_062	NA
157	HL_5V8I_166	1/2A/2594:2599	homologous HL_7RQB_063	NA HL_43074.18*
158	HL_5V8I_167	1/2A/2658:2663	GNRA geometric HL_5B2T_003	NA HL_43074.18*
159	HL_5V8I_168	1/2A/2701:2706	homologous HL_7RQB_065	NA HL_31583.1*
160	HL_5V8I_169	1/2A/2745:2759	homologous HL_7RQB_066	NA HL_56677.5*
161	HL_5V8I_171	1/2A/2819:2827	homologous HL_7RQB_068	NA HL_05018.6*
162	HL_5V8I_172	1/2A/2856:2861	homologous HL_7RQB_069	NA HL_43074.18*
163	HL_5V8I_173	1/2B/38:44	homologous HL_5TBW_185	NA HL_02733.5*
164	HL_5V8I_174	1/2B/86:91	GNRA homologous HL_5TBW_186	NA HL_43074.18*
165	HL_5V8I_175	1/2a/12:22	NA	NA
166	HL_5V8I_177	1/2a/158:163	NA	NA
167	HL_5V8I_178	1/2a/189C:189H	NA	NA
168	HL_5V8I_179	1/2a/200:217	NA	NA
169	HL_5V8I_180	1/2a/259:267	NA	NA
170	HL_5V8I_181	1/2a/296:301	NA	NA
171	HL_5V8I_182	1/2a/320:333	NA	NA
172	HL_5V8I_183	1/2a/342:347	NA	NA
173	HL_5V8I_184	1/2a/379:384	NA	NA
174	HL_5V8I_185	1/2a/419:424	NA	NA
175	HL_5V8I_186	1/2a/458:473	NA	NA
176	HL_5V8I_187	1/2a/521:528	NA	NA
177	HL_5V8I_188	1/2a/617:623	NA	NA
178	HL_5V8I_189	1/2a/689:698	NA	NA
179	HL_5V8I_190	1/2a/726:731	NA	NA
180	HL_5V8I_191	1/2a/786:796	NA	NA
181	HL_5V8I_192	1/2a/838:848	NA	NA
182	HL_5V8I_193	1/2a/862:867	NA	NA
183	HL_5V8I_194	1/2a/897:902	NA	NA
184	HL_5V8I_195	1/2a/963:972	NA	NA
185	HL_5V8I_196	1/2a/1012:1017	NA	NA
186	HL_5V8I_198	1/2a/1076:1081	NA	NA
187	HL_5V8I_199	1/2a/1089:1096	NA	NA
188	HL_5V8I_200	1/2a/1134:1140	NA	NA
189	HL_5V8I_201	1/2a/1165:1171	NA	NA
190	HL_5V8I_202	1/2a/1265:1270	NA	NA
191	HL_5V8I_203	1/2a/1314:1323	NA	NA
192	HL_5V8I_204	1/2a/1356:1366	NA	NA
193	HL_5V8I_205	1/2a/1445:1457	NA	NA
194	HL_5V8I_206	1/2a/1515:1520	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_5V8I_016	missing nts	homologous HL_7RQB_017
2	HL_5V8I_050	all high RSRZ	homologous HL_7RQB_051
3	HL_5V8I_066	missing nts	NA
4	HL_5V8I_072	missing nts	NA
5	HL_5V8I_107	missing nts	NA
6	HL_5V8I_119	missing nts	homologous HL_7RQB_017
7	HL_5V8I_133	missing nts	NA
8	HL_5V8I_141	missing nts	NA
9	HL_5V8I_154	all high RSRZ	NA
10	HL_5V8I_170	missing nts	NA
11	HL_5V8I_176	missing nts	NA
12	HL_5V8I_197	all high RSRZ	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	IL_5V8I_001	1/1A/24:30, 1/1A/510:516	Triple sheared with non-canonical cWW homologous IL_7RQB_001	NA IL_66414.5*
2	IL_5V8I_002	1/1A/36:37, 1/1A/442:444	Single bulged A homologous IL_7RQB_002	NA IL_80007.16*
3	IL_5V8I_003	1/1A/42:43, 1/1A/434:436	Minor groove platform homologous IL_7RQB_003	NA IL_06437.11*
4	IL_5V8I_004	1/1A/81:85, 1/1A/97:105	Kink-turn homologous IL_7RQB_004	NA IL_29549.9*
5	IL_5V8I_005	1/1A/183:184, 1/1A/212:214	Single stack bend homologous IL_7RQB_005	NA IL_04038.4*
6	IL_5V8I_006	1/1A/188:194, 1/1A/201:208	8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_006	NA IL_04346.5*
7	IL_5V8I_007	1/1A/239:245, 1/1A/253:258	7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007	NA IL_35110.5*
8	IL_5V8I_008	1/1A/272D:272E, 1/1A/363E:364	Major groove platform homologous IL_7RQB_009	NA IL_13730.12*
9	IL_5V8I_010	1/1A/280:284, 1/1A/357:360	tSH-tHW homologous IL_7RQB_011	NA IL_08757.3*
10	IL_5V8I_011	1/1A/288:290, 1/1A/350:353	Isolated tHS basepair with bulges homologous IL_7RQB_012	NA IL_38958.6*
11	IL_5V8I_012	1/1A/293:295, 1/1A/343:347	homologous IL_7RQB_013	NA IL_69440.1*
12	IL_5V8I_013	1/1A/481:484, 1/1A/496:509	homologous IL_7RQB_014	NA IL_60992.5*
13	IL_5V8I_014	1/1A/564:566, 1/1A/575:577	geometric IL_5J7L_257	NA IL_01312.13*
14	IL_5V8I_015	1/1A/606:610, 1/1A/618:622	AAA cross-strand stack homologous IL_7RQB_016	NA IL_56467.6*
15	IL_5V8I_016	1/1A/672:674, 1/1A/806:808	homologous IL_7RQB_017	NA IL_01312.13*
16	IL_5V8I_017	1/1A/674:678, 1/1A/799:806	geometric IL_7RQB_018	NA IL_17470.5*
17	IL_5V8I_018	1/1A/697:698, 1/1A/763:765	Single bulged A geometric IL_7RQB_019	NA IL_80007.16*
18	IL_5V8I_019	1/1A/702:703, 1/1A/728:730	Single bulged G homologous IL_7RQB_020	NA IL_59137.10*
19	IL_5V8I_020	1/1A/703:707, 1/1A/724:728	Triple sheared geometric IL_7RQB_021	NA IL_56467.6*
20	IL_5V8I_021	1/1A/738:741, 1/1A/756:758	Major groove platform with extra cWW homologous IL_7RQB_022	NA IL_95485.6*
21	IL_5V8I_022	1/1A/775:777, 1/1A/787:791	Multiple bulged bases geometric IL_7RQB_023	NA IL_90991.5*
22	IL_5V8I_023	1/1A/837:838, 1/1A/940:942	Single stack bend homologous IL_7RQB_024	NA IL_04038.4*
23	IL_5V8I_024	1/1A/844:846, 1/1A/931:934	Intercalated cWW geometric IL_7RQB_025	NA IL_01312.13*
24	IL_5V8I_025	1/1A/846:850, 1/1A/927:931	homologous IL_7RQB_026	NA IL_94165.1*
25	IL_5V8I_026	1/1A/857:862, 1/1A/915:920	5x5 Sarcin-Ricin with intercalated A; G-bulge geometric IL_7A0S_027	NA IL_89193.1*
26	IL_5V8I_027	1/1A/862:863, 1/1A/913:915	Minor groove platform homologous IL_7RQB_028	NA IL_06437.11*
27	IL_5V8I_028	1/1A/864:868, 1/1A/909:912	C-loop homologous IL_7RQB_029	NA IL_63596.4*
28	IL_5V8I_029	1/1A/875:877, 1/1A/899:902	Minor groove platform with extra cWW geometric IL_7RQB_031	NA IL_87332.1*
29	IL_5V8I_030	1/1A/877:879, 1/1A/898:899	Minor groove platform homologous IL_7RQB_032	NA IL_06437.11*
30	IL_5V8I_031	1/1A/880:881, 1/1A/895:897	Single bulged A homologous IL_7RQB_033	NA IL_80007.16*
31	IL_5V8I_032	1/1A/952:954, 1/1A/963:965	homologous IL_7RQB_034	NA IL_01312.13*
32	IL_5V8I_033	1/1A/994:996, 1/1A/1159:1160	Single bulged C homologous IL_7RQB_035	NA IL_61258.10*
33	IL_5V8I_034	1/1A/998:1002, 1/1A/1153:1157	UAA/GAN homologous IL_7RQB_036	NA IL_53523.5*
34	IL_5V8I_035	1/1A/1004:1011, 1/1A/1150:1151	SSU/LSU pseudoknot geometric IL_7RQB_037	NA IL_15861.6*
35	IL_5V8I_036	1/1A/1011:1013, 1/1A/1149:1150	Single bulged U homologous IL_7RQB_038	NA IL_83039.11*
36	IL_5V8I_037	1/1A/1018:1024, 1/1A/1140:1144	geometric IL_7RQB_039	NA IL_57188.3*
37	IL_5V8I_038	1/1A/1024:1030, 1/1A/1124:1140	homologous IL_7RQB_040	NA IL_55786.1*
38	IL_5V8I_039	1/1A/1031:1034, 1/1A/1121:1123	Isolated non-canonical cWW with bulges homologous IL_7RQB_041	NA IL_55456.1*
39	IL_5V8I_040	1/1A/1043:1051, 1/1A/1108:1112	Kink-turn homologous IL_7RQB_042	NA IL_90538.3*
40	IL_5V8I_041	1/1A/1087:1091, 1/1A/1100:1102	homologous IL_7RQB_044	NA
41	IL_5V8I_042	1/1A/1196:1198, 1/1A/1247:1250	Isolated cWS basepair homologous IL_7RQB_045	NA IL_67621.5*
42	IL_5V8I_043	1/1A/1202:1206, 1/1A/1240:1243	homologous IL_7RQB_046	NA IL_68574.2*
43	IL_5V8I_044	1/1A/1208:1215, 1/1A/1234:1238	Kink-turn homologous IL_7RQB_047	NA IL_29549.9*
44	IL_5V8I_045	1/1A/1219:1221, 1/1A/1229:1230	Single bulged A homologous IL_7RQB_048	NA IL_80007.16*
45	IL_5V8I_046	1/1A/1262:1269, 1/1A/2011:2017	8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049	NA IL_04346.5*
46	IL_5V8I_047	1/1A/1310:1313, 1/1A/1603:1604	Major groove platform; stack outside cWW homologous IL_7RQB_050	NA IL_70995.6*
47	IL_5V8I_048	1/1A/1319:1323, 1/1A/1331:1333	C-loop homologous IL_7RQB_051	NA IL_63596.4*
48	IL_5V8I_049	1/1A/1351:1355, 1/1A/1376:1380	UAA/GAN homologous IL_7RQB_052	NA IL_53523.5*
49	IL_5V8I_050	1/1A/1357:1361, 1/1A/1370:1374	tSH-tHW-tHS homologous IL_7RQB_053	NA IL_39521.5*
50	IL_5V8I_051	1/1A/1415:1416, 1/1A/1582:1587	homologous IL_7RQB_054	NA IL_67474.3*
51	IL_5V8I_052	1/1A/1417:1421, 1/1A/1577:1581	UAA/GAN homologous IL_7RQB_055	NA IL_53523.5*
52	IL_5V8I_053	1/1A/1433:1435, 1/1A/1557:1560	Isolated tWW turn homologous IL_7RQB_056	NA IL_54997.5*
53	IL_5V8I_054	1/1A/1437:1440, 1/1A/1551:1555	tSH-tHW homologous IL_7RQB_057	NA IL_08757.3*
54	IL_5V8I_055	1/1A/1448:1450, 1/1A/1462:1463	Single stack bend homologous IL_7RQB_058	NA IL_31836.1*
55	IL_5V8I_056	1/1A/1450A:1451, 1/1A/1459:1461	Single bulged A geometric IL_7RQB_059	NA IL_80007.16*
56	IL_5V8I_057	1/1A/1469:1473, 1/1A/1518:1523	UAA/GAN homologous IL_7RQB_060	NA IL_53523.5*
57	IL_5V8I_058	1/1A/1481:1482, 1/1A/1506:1510	homologous IL_7RQB_061	NA IL_46464.1*
58	IL_5V8I_059	1/1A/1489:1491, 1/1A/1499:1500	Single bulged A homologous IL_7RQB_062	NA IL_40508.4*
59	IL_5V8I_060	1/1A/1526:1529, 1/1A/1540:1546	homologous IL_7RQB_063	NA IL_89836.1*
60	IL_5V8I_061	1/1A/1651:1656, 1/1A/2004:2006	homologous IL_7RQB_064	NA IL_12566.2*
61	IL_5V8I_062	1/1A/1663:1665, 1/1A/1995:1997	Isolated tWW turn homologous IL_7RQB_065	NA IL_54997.5*
62	IL_5V8I_063	1/1A/1666:1669, 1/1A/1993:1994	Major groove platform; stack outside cWW geometric IL_7RQB_066	NA IL_80663.10*
63	IL_5V8I_064	1/1A/1669:1674, 1/1A/1990:1993	Intercalated tWH homologous IL_7RQB_067	NA IL_01312.13*
64	IL_5V8I_065	1/1A/1686:1691, 1/1A/1696:1702	tSH-tSH-tHH-tHS geometric IL_7RQB_068	NA IL_66584.5*
65	IL_5V8I_066	1/1A/1770:1771, 1/1A/1980:1982	Single bulged A homologous IL_7RQB_069	NA IL_80007.16*
66	IL_5V8I_067	1/1A/1798:1804, 1/1A/1813:1821	Kink-turn related homologous IL_7RQB_070	NA IL_17069.3*
67	IL_5V8I_068	1/1A/1837:1840, 1/1A/1902:1903	Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071	NA IL_31836.1*
68	IL_5V8I_069	1/1A/1841:1842, 1/1A/1898:1901	Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_072	NA IL_13730.12*
69	IL_5V8I_070	1/1A/1846:1849, 1/1A/1893:1894	Minor groove platform homologous IL_7RQB_073	NA IL_06437.11*
70	IL_5V8I_071	1/1A/1851:1855, 1/1A/1887:1891	UAA/GAN with extra pair homologous IL_7RQB_074	NA IL_34907.2*
71	IL_5V8I_072	1/1A/1856:1860, 1/1A/1882:1886	Triple sheared homologous IL_7RQB_075	NA IL_56467.6*
72	IL_5V8I_073	1/1A/1933:1934, 1/1A/1964:1967	Multiple bulged bases homologous IL_7RQB_076	NA IL_69632.1*
73	IL_5V8I_074	1/1A/1934:1945, 1/1A/1961:1964	geometric IL_4WF9_077	NA IL_70285.1*
74	IL_5V8I_075	1/1A/2050:2052, 1/1A/2617:2618	Major groove platform homologous IL_7RQB_078	NA IL_80663.10*
75	IL_5V8I_076	1/1A/2054:2057, 1/1A/2611:2615	NA	NA
76	IL_5V8I_077	1/1A/2067:2069, 1/1A/2442:2443	Single bulged U homologous IL_7RQB_080	NA IL_83039.11*
77	IL_5V8I_078	1/1A/2070:2071, 1/1A/2438:2441	Minor groove platform homologous IL_7RQB_081	NA IL_06437.11*
78	IL_5V8I_079	1/1A/2081:2083, 1/1A/2236:2239	Isolated tHS basepair with bulges homologous IL_7RQB_082	NA IL_38958.6*
79	IL_5V8I_080	1/1A/2085:2087, 1/1A/2232:2234	homologous IL_7RQB_083	NA IL_01312.13*
80	IL_5V8I_082	1/1A/2110:2120, 1/1A/2178:2179	homologous IL_7RQB_085	NA
81	IL_5V8I_084	1/1A/2129:2136, 1/1A/2155:2159	homologous IL_7RQB_087	NA
82	IL_5V8I_085	1/1A/2297:2299, 1/1A/2317:2321	Isolated tHS basepair with bulges geometric IL_7RQB_088	NA IL_38958.6*
83	IL_5V8I_086	1/1A/2350:2353, 1/1A/2364:2367	Double sheared homologous IL_7RQB_089	NA IL_09705.7*
84	IL_5V8I_087	1/1A/2401:2403, 1/1A/2414:2415	Major groove platform homologous IL_7RQB_090	NA IL_80663.10*
85	IL_5V8I_088	1/1A/2453:2454, 1/1A/2498:2500	Single stack bend geometric IL_7RQB_091	NA IL_04038.4*
86	IL_5V8I_089	1/1A/2454:2455, 1/1A/2496:2498	Major groove platform homologous IL_7RQB_092	NA IL_80663.10*
87	IL_5V8I_090	1/1A/2457:2459, 1/1A/2493:2494	Major groove platform geometric IL_4WF9_091	NA IL_80663.10*
88	IL_5V8I_091	1/1A/2459:2461, 1/1A/2489:2493	Major groove minor groove platform with extra cWW geometric IL_7RQB_094	NA IL_96042.4*
89	IL_5V8I_092	1/1A/2466:2470, 1/1A/2480:2484	Triple sheared homologous IL_7RQB_095	NA IL_56467.6*
90	IL_5V8I_093	1/1A/2507:2508, 1/1A/2580:2582	Major groove platform homologous IL_7RQB_096	NA IL_02060.4*
91	IL_5V8I_094	1/1A/2510:2512, 1/1A/2574:2578	Isolated non-canonical cWW with bulges homologous IL_7RQB_097	NA IL_01312.13*
92	IL_5V8I_095	1/1A/2512:2513, 1/1A/2571:2574	Multiple bulged bases geometric IL_7RQB_098	NA IL_13730.12*
93	IL_5V8I_096	1/1A/2522:2523, 1/1A/2540:2543	Minor groove platform with intercalation homologous IL_7RQB_099	NA IL_95601.1*
94	IL_5V8I_097	1/1A/2588:2590, 1/1A/2604:2606	homologous IL_7RQB_100	NA
95	IL_5V8I_098	1/1A/2591:2592, 1/1A/2601:2603	Single bulged A geometric IL_4V9F_090	NA IL_80007.16*
96	IL_5V8I_099	1/1A/2636:2640, 1/1A/2774:2782	tSH-tHS-tHW homologous IL_7RQB_102	NA IL_34907.2*
97	IL_5V8I_100	1/1A/2652:2658, 1/1A/2663:2668	Sarcin-Ricin target in LSU H95; G-bulge geometric IL_7RQB_103	NA IL_35110.5*
98	IL_5V8I_101	1/1A/2680:2684, 1/1A/2725:2727	C-loop homologous IL_7RQB_104	NA IL_63596.4*
99	IL_5V8I_102	1/1A/2687:2691, 1/1A/2718:2722	homologous IL_7RQB_105	NA IL_08296.3*
100	IL_5V8I_103	1/1A/2695:2696, 1/1A/2711:2714	Multiple bulged bases homologous IL_7RQB_106	NA IL_77034.1*
101	IL_5V8I_104	1/1A/2737:2742, 1/1A/2762:2767	UAA/GAN with extra cWW homologous IL_7RQB_107	NA IL_49767.4*
102	IL_5V8I_105	1/1A/2838:2839, 1/1A/2878:2880	Single bulged C homologous IL_7RQB_108	NA IL_61258.10*
103	IL_5V8I_106	1/1A/2843:2846, 1/1A/2870:2874	homologous IL_7RQB_109	NA IL_58764.1*
104	IL_5V8I_107	1/1A/2847:2852, 1/1A/2865:2869	homologous IL_7RQB_110	NA IL_83162.3*
105	IL_5V8I_108	1/1B/17:18, 1/1B/65:67	NA	NA
106	IL_5V8I_109	1/1B/23:28, 1/1B/56:60	NA	NA
107	IL_5V8I_110	1/1B/30:31, 1/1B/51:54	NA	NA
108	IL_5V8I_111	1/1B/34:38, 1/1B/44:48	NA	NA
109	IL_5V8I_112	1/1B/71:79, 1/1B/98:106	NA	NA
110	IL_5V8I_113	1/1a/30:32, 1/1a/552:553	NA	NA
111	IL_5V8I_114	1/1a/44:45, 1/1a/396:398	NA	NA
112	IL_5V8I_115	1/1a/47:52, 1/1a/359:361	NA	NA
113	IL_5V8I_116	1/1a/54:56, 1/1a/356:357	NA	NA
114	IL_5V8I_117	1/1a/63:66, 1/1a/103:104	NA	NA
115	IL_5V8I_118	1/1a/67:69, 1/1a/100:102	NA	NA
116	IL_5V8I_119	1/1a/129:131, 1/1a/231:232	NA	NA
117	IL_5V8I_120	1/1a/132:136, 1/1a/227:230	NA	NA
118	IL_5V8I_121	1/1a/148:153, 1/1a/168:174	NA	NA
119	IL_5V8I_122	1/1a/186:188, 1/1a/189L:191	NA	NA
120	IL_5V8I_123	1/1a/242:247, 1/1a/277:284	NA	NA
121	IL_5V8I_124	1/1a/249:252, 1/1a/274:275	NA	NA
122	IL_5V8I_125	1/1a/292:293, 1/1a/304:308	NA	NA
123	IL_5V8I_126	1/1a/367:369, 1/1a/392:393	NA	NA
124	IL_5V8I_127	1/1a/371:375, 1/1a/389:390	NA	NA
125	IL_5V8I_128	1/1a/375:376, 1/1a/387:389	NA	NA
126	IL_5V8I_129	1/1a/409:416, 1/1a/427:433	NA	NA
127	IL_5V8I_130	1/1a/446:450, 1/1a/483:488	NA	NA
128	IL_5V8I_131	1/1a/450:455, 1/1a/476:483	NA	NA
129	IL_5V8I_132	1/1a/504:511, 1/1a/540:541	NA	NA
130	IL_5V8I_133	1/1a/515:521, 1/1a/528:536	NA	NA
131	IL_5V8I_134	1/1a/569:575, 1/1a/880:881	NA	NA
132	IL_5V8I_135	1/1a/580:584, 1/1a/757:761	NA	NA
133	IL_5V8I_136	1/1a/594:596, 1/1a/644:645	NA	NA
134	IL_5V8I_137	1/1a/597:598, 1/1a/640:643	NA	NA
135	IL_5V8I_138	1/1a/605:612, 1/1a/628:633	NA	NA
136	IL_5V8I_139	1/1a/654:655, 1/1a/751:754	NA	NA
137	IL_5V8I_140	1/1a/657:658, 1/1a/747:749	NA	NA
138	IL_5V8I_141	1/1a/662:666, 1/1a/740:743	NA	NA
139	IL_5V8I_142	1/1a/673:678, 1/1a/712:717	NA	NA
140	IL_5V8I_143	1/1a/683:688, 1/1a/699:707	NA	NA
141	IL_5V8I_144	1/1a/774:778, 1/1a/804:805	NA	NA
142	IL_5V8I_145	1/1a/779:783, 1/1a/799:803	NA	NA
143	IL_5V8I_146	1/1a/887:894, 1/1a/905:910	NA	NA
144	IL_5V8I_147	1/1a/922:923, 1/1a/1393:1395	NA	NA
145	IL_5V8I_148	1/1a/925:927, 1/1a/1390:1391	NA	NA
146	IL_5V8I_149	1/1a/933:935, 1/1a/1380:1384	NA	NA
147	IL_5V8I_150	1/1a/953:954, 1/1a/1226:1228	NA	NA
148	IL_5V8I_151	1/1a/993:997, 1/1a/1044:1045	NA	NA
149	IL_5V8I_152	1/1a/1048:1050, 1/1a/1208:1209	NA	NA
150	IL_5V8I_153	1/1a/1050:1052, 1/1a/1206:1208	NA	NA
151	IL_5V8I_154	1/1a/1052:1056, 1/1a/1204:1206	NA	NA
152	IL_5V8I_155	1/1a/1057:1058, 1/1a/1199:1203	NA	NA
153	IL_5V8I_156	1/1a/1060:1061, 1/1a/1195:1197	NA	NA
154	IL_5V8I_157	1/1a/1061:1063, 1/1a/1193:1195	NA	NA
155	IL_5V8I_158	1/1a/1124:1127, 1/1a/1145:1149	NA	NA
156	IL_5V8I_159	1/1a/1129:1132, 1/1a/1142:1143	NA	NA
157	IL_5V8I_160	1/1a/1247:1253, 1/1a/1284:1290	NA	NA
158	IL_5V8I_161	1/1a/1255:1258, 1/1a/1277:1282	NA	NA
159	IL_5V8I_162	1/1a/1259:1260, 1/1a/1274:1276	NA	NA
160	IL_5V8I_163	1/1a/

5V8I Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops