5DOX | Motifs

208 Hairpin loops
356 Internal loops
33 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	HL_5DOX_001 ➜	1/1A/59:68	NA	NA
2	HL_5DOX_002 ➜	1/1A/87:95	NA	NA
3	HL_5DOX_003 ➜	1/1A/123:128	NA	NA
4	HL_5DOX_004 ➜	1/1A/139:142A	NA	NA
5	HL_5DOX_005 ➜	1/1A/194:201	NA	NA
6	HL_5DOX_006 ➜	1/1A/225:230	NA	NA
7	HL_5DOX_007 ➜	1/1A/246:252	NA	NA
8	HL_5DOX_008 ➜	1/1A/271I:271O	NA	NA
9	HL_5DOX_009 ➜	1/1A/305:312	NA	NA
10	HL_5DOX_010 ➜	1/1A/319:323	NA	NA
11	HL_5DOX_011 ➜	1/1A/327:335	NA	NA
12	HL_5DOX_012 ➜	1/1A/382:392	NA	NA
13	HL_5DOX_013 ➜	1/1A/410:417	NA	NA
14	HL_5DOX_014 ➜	1/1A/462:467	NA	NA
15	HL_5DOX_015 ➜	1/1A/487:493	NA	NA
16	HL_5DOX_017 ➜	1/1A/566:575	NA	NA
17	HL_5DOX_018 ➜	1/1A/612:615	NA	NA
18	HL_5DOX_019 ➜	1/1A/629:634	NA	NA
19	HL_5DOX_020 ➜	1/1A/641:647	NA	NA
20	HL_5DOX_022 ➜	1/1A/712:719	NA	NA
21	HL_5DOX_023 ➜	1/1A/744:753	NA	NA
22	HL_5DOX_024 ➜	1/1A/779:785	NA	NA
23	HL_5DOX_025 ➜	1/1A/826:831	NA	NA
24	HL_5DOX_026 ➜	1/1A/881:895	NA	NA
25	HL_5DOX_027 ➜	1/1A/955:962	NA	NA
26	HL_5DOX_028 ➜	1/1A/978:985	NA	NA
27	HL_5DOX_031 ➜	1/1A/1171:1178	NA	NA
28	HL_5DOX_032 ➜	1/1A/1222:1227	NA	NA
29	HL_5DOX_033 ➜	1/1A/1281:1289	NA	NA
30	HL_5DOX_034 ➜	1/1A/1324:1330	NA	NA
31	HL_5DOX_035 ➜	1/1A/1363:1368	NA	NA
32	HL_5DOX_036 ➜	1/1A/1389:1398	NA	NA
33	HL_5DOX_037 ➜	1/1A/1451:1459	NA	NA
34	HL_5DOX_038 ➜	1/1A/1492:1498	NA	NA
35	HL_5DOX_039 ➜	1/1A/1565:1568	NA	NA
36	HL_5DOX_040 ➜	1/1A/1612:1619	NA	NA
37	HL_5DOX_042 ➜	1/1A/1691:1696	NA	NA
38	HL_5DOX_043 ➜	1/1A/1720:1742	NA	NA
39	HL_5DOX_044 ➜	1/1A/1752:1756	NA	NA
40	HL_5DOX_045 ➜	1/1A/1777:1787	NA	NA
41	HL_5DOX_046 ➜	1/1A/1806:1811	NA	NA
42	HL_5DOX_047 ➜	1/1A/1864:1878	NA	NA
43	HL_5DOX_048 ➜	1/1A/1909:1921	NA	NA
44	HL_5DOX_049 ➜	1/1A/1949:1957	NA	NA
45	HL_5DOX_051 ➜	1/1A/2027:2036	NA	NA
46	HL_5DOX_053 ➜	1/1A/2205:2219	NA	NA
47	HL_5DOX_054 ➜	1/1A/2248:2256	NA	NA
48	HL_5DOX_055 ➜	1/1A/2264:2276	NA	NA
49	HL_5DOX_056 ➜	1/1A/2303:2313	NA	NA
50	HL_5DOX_057 ➜	1/1A/2324:2331	NA	NA
51	HL_5DOX_058 ➜	1/1A/2355:2362	NA	NA
52	HL_5DOX_059 ➜	1/1A/2374:2379	NA	NA
53	HL_5DOX_060 ➜	1/1A/2404:2413	NA	NA
54	HL_5DOX_061 ➜	1/1A/2471:2479	NA	NA
55	HL_5DOX_062 ➜	1/1A/2528:2535	NA	NA
56	HL_5DOX_063 ➜	1/1A/2551:2557	NA	NA
57	HL_5DOX_064 ➜	1/1A/2594:2599	NA	NA
58	HL_5DOX_065 ➜	1/1A/2658:2663	NA	NA
59	HL_5DOX_066 ➜	1/1A/2701:2706	NA	NA
60	HL_5DOX_067 ➜	1/1A/2745:2759	NA	NA
61	HL_5DOX_070 ➜	1/1A/2856:2861	NA	NA
62	HL_5DOX_071 ➜	1/1B/38:44	NA	NA
63	HL_5DOX_072 ➜	1/1B/86:91	NA	NA
64	HL_5DOX_073 ➜	1/1a/12:22	NA	NA
65	HL_5DOX_075 ➜	1/1a/156:165	NA	NA
66	HL_5DOX_076 ➜	1/1a/189C:189H	NA	NA
67	HL_5DOX_077 ➜	1/1a/199:218	NA	NA
68	HL_5DOX_078 ➜	1/1a/258:268	NA	NA
69	HL_5DOX_079 ➜	1/1a/296:301	NA	NA
70	HL_5DOX_080 ➜	1/1a/320:333	NA	NA
71	HL_5DOX_083 ➜	1/1a/419:424	NA	NA
72	HL_5DOX_084 ➜	1/1a/458:473	NA	NA
73	HL_5DOX_085 ➜	1/1a/521:528	NA	NA
74	HL_5DOX_087 ➜	1/1a/689:698	NA	NA
75	HL_5DOX_089 ➜	1/1a/786:796	NA	NA
76	HL_5DOX_090 ➜	1/1a/838:848	NA	NA
77	HL_5DOX_091 ➜	1/1a/862:867	NA	NA
78	HL_5DOX_092 ➜	1/1a/897:902	NA	NA
79	HL_5DOX_093 ➜	1/1a/963:972	NA	NA
80	HL_5DOX_095 ➜	1/1a/1076:1081	NA	NA
81	HL_5DOX_096 ➜	1/1a/1089:1096	NA	NA
82	HL_5DOX_097 ➜	1/1a/1134:1140	NA	NA
83	HL_5DOX_098 ➜	1/1a/1165:1171	NA	NA
84	HL_5DOX_102 ➜	1/1a/1445:1457	NA	NA
85	HL_5DOX_103 ➜	1/1a/1515:1520	NA	NA
86	HL_5DOX_104 ➜	1/2A/59:68	NA	NA
87	HL_5DOX_105 ➜	1/2A/87:95	NA	NA
88	HL_5DOX_106 ➜	1/2A/123:128	NA	NA
89	HL_5DOX_107 ➜	1/2A/139:142A	NA	NA
90	HL_5DOX_109 ➜	1/2A/194:201	NA	NA
91	HL_5DOX_110 ➜	1/2A/225:230	NA	NA
92	HL_5DOX_111 ➜	1/2A/246:252	NA	NA
93	HL_5DOX_112 ➜	1/2A/271I:271O	NA	NA
94	HL_5DOX_113 ➜	1/2A/305:312	NA	NA
95	HL_5DOX_114 ➜	1/2A/319:323	NA	NA
96	HL_5DOX_115 ➜	1/2A/327:335	NA	NA
97	HL_5DOX_116 ➜	1/2A/382:392	NA	NA
98	HL_5DOX_117 ➜	1/2A/410:417	NA	NA
99	HL_5DOX_118 ➜	1/2A/462:467	NA	NA
100	HL_5DOX_119 ➜	1/2A/487:493	NA	NA
101	HL_5DOX_121 ➜	1/2A/566:575	NA	NA
102	HL_5DOX_122 ➜	1/2A/612:615	NA	NA
103	HL_5DOX_123 ➜	1/2A/629:634	NA	NA
104	HL_5DOX_124 ➜	1/2A/641:647	NA	NA
105	HL_5DOX_126 ➜	1/2A/712:719	NA	NA
106	HL_5DOX_127 ➜	1/2A/744:753	NA	NA
107	HL_5DOX_130 ➜	1/2A/882:894	NA	NA
108	HL_5DOX_131 ➜	1/2A/955:962	NA	NA
109	HL_5DOX_132 ➜	1/2A/978:985	NA	NA
110	HL_5DOX_136 ➜	1/2A/1222:1227	NA	NA
111	HL_5DOX_137 ➜	1/2A/1281:1289	NA	NA
112	HL_5DOX_138 ➜	1/2A/1324:1330	NA	NA
113	HL_5DOX_139 ➜	1/2A/1363:1368	NA	NA
114	HL_5DOX_140 ➜	1/2A/1389:1398	NA	NA
115	HL_5DOX_141 ➜	1/2A/1451:1459	NA	NA
116	HL_5DOX_142 ➜	1/2A/1492:1498	NA	NA
117	HL_5DOX_144 ➜	1/2A/1565:1568	NA	NA
118	HL_5DOX_145 ➜	1/2A/1612:1619	NA	NA
119	HL_5DOX_146 ➜	1/2A/1631:1635	NA	NA
120	HL_5DOX_147 ➜	1/2A/1691:1696	NA	NA
121	HL_5DOX_148 ➜	1/2A/1720:1742	NA	NA
122	HL_5DOX_149 ➜	1/2A/1752:1756	NA	NA
123	HL_5DOX_150 ➜	1/2A/1777:1787	NA	NA
124	HL_5DOX_151 ➜	1/2A/1806:1811	NA	NA
125	HL_5DOX_152 ➜	1/2A/1864:1878	NA	NA
126	HL_5DOX_153 ➜	1/2A/1909:1921	NA	NA
127	HL_5DOX_154 ➜	1/2A/1949:1957	NA	NA
128	HL_5DOX_155 ➜	1/2A/2027:2036	NA	NA
129	HL_5DOX_157 ➜	1/2A/2205:2219	NA	NA
130	HL_5DOX_158 ➜	1/2A/2248:2256	NA	NA
131	HL_5DOX_159 ➜	1/2A/2264:2276	NA	NA
132	HL_5DOX_160 ➜	1/2A/2303:2313	NA	NA
133	HL_5DOX_161 ➜	1/2A/2324:2331	NA	NA
134	HL_5DOX_162 ➜	1/2A/2355:2362	NA	NA
135	HL_5DOX_163 ➜	1/2A/2374:2379	NA	NA
136	HL_5DOX_164 ➜	1/2A/2404:2413	NA	NA
137	HL_5DOX_165 ➜	1/2A/2471:2479	NA	NA
138	HL_5DOX_166 ➜	1/2A/2527:2536	NA	NA
139	HL_5DOX_167 ➜	1/2A/2551:2557	NA	NA
140	HL_5DOX_168 ➜	1/2A/2594:2599	NA	NA
141	HL_5DOX_169 ➜	1/2A/2658:2663	NA	NA
142	HL_5DOX_170 ➜	1/2A/2701:2706	NA	NA
143	HL_5DOX_171 ➜	1/2A/2745:2759	NA	NA
144	HL_5DOX_173 ➜	1/2A/2819:2827	NA	NA
145	HL_5DOX_174 ➜	1/2A/2856:2861	NA	NA
146	HL_5DOX_175 ➜	1/2B/38:44	NA	NA
147	HL_5DOX_176 ➜	1/2B/86:91	NA	NA
148	HL_5DOX_177 ➜	1/2a/12:22	NA	NA
149	HL_5DOX_179 ➜	1/2a/158:163	NA	NA
150	HL_5DOX_180 ➜	1/2a/189C:189H	NA	NA
151	HL_5DOX_181 ➜	1/2a/200:217	NA	NA
152	HL_5DOX_182 ➜	1/2a/258:268	NA	NA
153	HL_5DOX_183 ➜	1/2a/296:301	NA	NA
154	HL_5DOX_184 ➜	1/2a/320:333	NA	NA
155	HL_5DOX_185 ➜	1/2a/342:347	NA	NA
156	HL_5DOX_186 ➜	1/2a/379:384	NA	NA
157	HL_5DOX_187 ➜	1/2a/419:424	NA	NA
158	HL_5DOX_188 ➜	1/2a/458:473	NA	NA
159	HL_5DOX_189 ➜	1/2a/521:528	NA	NA
160	HL_5DOX_191 ➜	1/2a/689:698	NA	NA
161	HL_5DOX_193 ➜	1/2a/786:796	NA	NA
162	HL_5DOX_194 ➜	1/2a/838:848	NA	NA
163	HL_5DOX_195 ➜	1/2a/862:867	NA	NA
164	HL_5DOX_196 ➜	1/2a/897:902	NA	NA
165	HL_5DOX_197 ➜	1/2a/963:972	NA	NA
166	HL_5DOX_200 ➜	1/2a/1076:1081	NA	NA
167	HL_5DOX_202 ➜	1/2a/1134:1140	NA	NA
168	HL_5DOX_203 ➜	1/2a/1165:1171	NA	NA
169	HL_5DOX_204 ➜	1/2a/1265:1270	NA	NA
170	HL_5DOX_207 ➜	1/2a/1445:1457	NA	NA
171	HL_5DOX_208 ➜	1/2a/1515:1520	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_5DOX_016 ➜	missing nts	NA
2	HL_5DOX_021 ➜	missing nts	NA
3	HL_5DOX_029 ➜	missing nts	NA
4	HL_5DOX_030 ➜	missing nts	NA
5	HL_5DOX_041 ➜	all high RSRZ	NA
6	HL_5DOX_050 ➜	all high RSRZ	NA
7	HL_5DOX_052 ➜	missing nts	NA
8	HL_5DOX_068 ➜	missing nts	NA
9	HL_5DOX_069 ➜	all high RSRZ	NA
10	HL_5DOX_074 ➜	missing nts	NA
11	HL_5DOX_081 ➜	missing nts	NA
12	HL_5DOX_082 ➜	all high RSRZ	NA
13	HL_5DOX_086 ➜	all high RSRZ	NA
14	HL_5DOX_088 ➜	all high RSRZ	NA
15	HL_5DOX_094 ➜	all high RSRZ	NA
16	HL_5DOX_099 ➜	all high RSRZ	NA
17	HL_5DOX_100 ➜	all high RSRZ	NA
18	HL_5DOX_101 ➜	all high RSRZ	NA
19	HL_5DOX_108 ➜	missing nts	NA
20	HL_5DOX_120 ➜	missing nts	NA
21	HL_5DOX_125 ➜	missing nts	NA
22	HL_5DOX_128 ➜	all high RSRZ	NA
23	HL_5DOX_129 ➜	all high RSRZ	NA
24	HL_5DOX_133 ➜	missing nts	NA
25	HL_5DOX_134 ➜	missing nts	NA
26	HL_5DOX_135 ➜	missing nts	NA
27	HL_5DOX_143 ➜	missing nts	NA
28	HL_5DOX_156 ➜	missing nts	NA
29	HL_5DOX_172 ➜	missing nts	NA
30	HL_5DOX_178 ➜	missing nts	NA
31	HL_5DOX_190 ➜	all high RSRZ	NA
32	HL_5DOX_192 ➜	all high RSRZ	NA
33	HL_5DOX_198 ➜	all high RSRZ	NA
34	HL_5DOX_199 ➜	missing nts	NA
35	HL_5DOX_201 ➜	all high RSRZ	NA
36	HL_5DOX_205 ➜	all high RSRZ	NA
37	HL_5DOX_206 ➜	all high RSRZ	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_5DOX_001 ➜	1/1A/24:30,1/1A/510:516	NA	NA
2	IL_5DOX_002 ➜	1/1A/36:37,1/1A/442:444	NA	NA
3	IL_5DOX_003 ➜	1/1A/42:43,1/1A/434:436	NA	NA
4	IL_5DOX_004 ➜	1/1A/81:85,1/1A/97:105	NA	NA
5	IL_5DOX_005 ➜	1/1A/183:184,1/1A/212:214	NA	NA
6	IL_5DOX_006 ➜	1/1A/188:194,1/1A/201:208	NA	NA
7	IL_5DOX_007 ➜	1/1A/239:245,1/1A/253:258	NA	NA
8	IL_5DOX_008 ➜	1/1A/272D:272E,1/1A/363E:364	NA	NA
9	IL_5DOX_010 ➜	1/1A/280:284,1/1A/357:360	NA	NA
10	IL_5DOX_011 ➜	1/1A/288:290,1/1A/350:353	NA	NA
11	IL_5DOX_012 ➜	1/1A/293:295,1/1A/343:347	NA	NA
12	IL_5DOX_013 ➜	1/1A/481:484,1/1A/496:509	NA	NA
13	IL_5DOX_014 ➜	1/1A/564:566,1/1A/575:577	NA	NA
14	IL_5DOX_015 ➜	1/1A/606:610,1/1A/618:622	NA	NA
15	IL_5DOX_016 ➜	1/1A/672:674,1/1A/806:808	NA	NA
16	IL_5DOX_017 ➜	1/1A/674:678,1/1A/799:806	NA	NA
17	IL_5DOX_018 ➜	1/1A/697:698,1/1A/763:765	NA	NA
18	IL_5DOX_019 ➜	1/1A/702:703,1/1A/728:730	NA	NA
19	IL_5DOX_020 ➜	1/1A/703:707,1/1A/724:728	NA	NA
20	IL_5DOX_021 ➜	1/1A/738:741,1/1A/756:758	NA	NA
21	IL_5DOX_022 ➜	1/1A/775:777,1/1A/787:791	NA	NA
22	IL_5DOX_023 ➜	1/1A/837:838,1/1A/940:942	NA	NA
23	IL_5DOX_024 ➜	1/1A/844:846,1/1A/931:934	NA	NA
24	IL_5DOX_025 ➜	1/1A/846:850,1/1A/927:931	NA	NA
25	IL_5DOX_028 ➜	1/1A/864:868,1/1A/909:912	NA	NA
26	IL_5DOX_029 ➜	1/1A/870:872,1/1A/905:907	NA	NA
27	IL_5DOX_030 ➜	1/1A/875:877,1/1A/899:902	NA	NA
28	IL_5DOX_031 ➜	1/1A/877:879,1/1A/898:899	NA	NA
29	IL_5DOX_032 ➜	1/1A/880:881,1/1A/895:897	NA	NA
30	IL_5DOX_034 ➜	1/1A/994:996,1/1A/1159:1160	NA	NA
31	IL_5DOX_035 ➜	1/1A/998:1002,1/1A/1153:1157	NA	NA
32	IL_5DOX_036 ➜	1/1A/1004:1011,1/1A/1150:1151	NA	NA
33	IL_5DOX_037 ➜	1/1A/1011:1013,1/1A/1149:1150	NA	NA
34	IL_5DOX_038 ➜	1/1A/1018:1024,1/1A/1140:1144	NA	NA
35	IL_5DOX_039 ➜	1/1A/1024:1030,1/1A/1124:1140	NA	NA
36	IL_5DOX_040 ➜	1/1A/1031:1034,1/1A/1121:1123	NA	NA
37	IL_5DOX_041 ➜	1/1A/1041:1043,1/1A/1112:1114	NA	NA
38	IL_5DOX_042 ➜	1/1A/1043:1051,1/1A/1108:1112	NA	NA
39	IL_5DOX_045 ➜	1/1A/1196:1198,1/1A/1247:1250	NA	NA
40	IL_5DOX_046 ➜	1/1A/1202:1206,1/1A/1240:1243	NA	NA
41	IL_5DOX_047 ➜	1/1A/1208:1215,1/1A/1234:1238	NA	NA
42	IL_5DOX_048 ➜	1/1A/1219:1221,1/1A/1229:1230	NA	NA
43	IL_5DOX_049 ➜	1/1A/1262:1269,1/1A/2011:2017	NA	NA
44	IL_5DOX_050 ➜	1/1A/1310:1313,1/1A/1603:1604	NA	NA
45	IL_5DOX_051 ➜	1/1A/1319:1323,1/1A/1331:1333	NA	NA
46	IL_5DOX_052 ➜	1/1A/1351:1355,1/1A/1376:1380	NA	NA
47	IL_5DOX_053 ➜	1/1A/1357:1361,1/1A/1370:1374	NA	NA
48	IL_5DOX_054 ➜	1/1A/1415:1416,1/1A/1582:1587	NA	NA
49	IL_5DOX_055 ➜	1/1A/1417:1421,1/1A/1577:1581	NA	NA
50	IL_5DOX_056 ➜	1/1A/1433:1435,1/1A/1557:1560	NA	NA
51	IL_5DOX_057 ➜	1/1A/1437:1440,1/1A/1551:1555	NA	NA
52	IL_5DOX_058 ➜	1/1A/1448:1450,1/1A/1462:1463	NA	NA
53	IL_5DOX_059 ➜	1/1A/1450A:1451,1/1A/1459:1461	NA	NA
54	IL_5DOX_060 ➜	1/1A/1469:1473,1/1A/1518:1523	NA	NA
55	IL_5DOX_061 ➜	1/1A/1481:1482,1/1A/1506:1510	NA	NA
56	IL_5DOX_062 ➜	1/1A/1489:1491,1/1A/1499:1500	NA	NA
57	IL_5DOX_063 ➜	1/1A/1526:1529,1/1A/1540:1546	NA	NA
58	IL_5DOX_064 ➜	1/1A/1651:1656,1/1A/2004:2006	NA	NA
59	IL_5DOX_065 ➜	1/1A/1686:1691,1/1A/1696:1702	NA	NA
60	IL_5DOX_067 ➜	1/1A/1798:1804,1/1A/1813:1821	NA	NA
61	IL_5DOX_068 ➜	1/1A/1837:1840,1/1A/1902:1903	NA	NA
62	IL_5DOX_069 ➜	1/1A/1841:1842,1/1A/1898:1901	NA	NA
63	IL_5DOX_070 ➜	1/1A/1846:1849,1/1A/1893:1894	NA	NA
64	IL_5DOX_071 ➜	1/1A/1851:1855,1/1A/1887:1891	NA	NA
65	IL_5DOX_072 ➜	1/1A/1856:1860,1/1A/1882:1886	NA	NA
66	IL_5DOX_073 ➜	1/1A/1933:1934,1/1A/1964:1967	NA	NA
67	IL_5DOX_074 ➜	1/1A/1934:1945,1/1A/1961:1964	NA	NA
68	IL_5DOX_075 ➜	1/1A/2050:2052,1/1A/2617:2618	NA	NA
69	IL_5DOX_076 ➜	1/1A/2054:2057,1/1A/2611:2615	NA	NA
70	IL_5DOX_077 ➜	1/1A/2067:2069,1/1A/2442:2443	NA	NA
71	IL_5DOX_078 ➜	1/1A/2070:2071,1/1A/2438:2441	NA	NA
72	IL_5DOX_079 ➜	1/1A/2081:2083,1/1A/2236:2239	NA	NA
73	IL_5DOX_080 ➜	1/1A/2085:2087,1/1A/2232:2234	NA	NA
74	IL_5DOX_081 ➜	1/1A/2101:2103,1/1A/2186:2188	NA	NA
75	IL_5DOX_089 ➜	1/1A/2350:2353,1/1A/2364:2367	NA	NA
76	IL_5DOX_090 ➜	1/1A/2401:2403,1/1A/2414:2415	NA	NA
77	IL_5DOX_092 ➜	1/1A/2454:2455,1/1A/2496:2498	NA	NA
78	IL_5DOX_093 ➜	1/1A/2457:2459,1/1A/2493:2494	NA	NA
79	IL_5DOX_094 ➜	1/1A/2459:2461,1/1A/2489:2493	NA	NA
80	IL_5DOX_095 ➜	1/1A/2466:2470,1/1A/2480:2484	NA	NA
81	IL_5DOX_097 ➜	1/1A/2510:2512,1/1A/2574:2578	NA	NA
82	IL_5DOX_098 ➜	1/1A/2512:2513,1/1A/2571:2574	NA	NA
83	IL_5DOX_100 ➜	1/1A/2588:2590,1/1A/2604:2606	NA	NA
84	IL_5DOX_101 ➜	1/1A/2591:2592,1/1A/2601:2603	NA	NA
85	IL_5DOX_102 ➜	1/1A/2636:2640,1/1A/2774:2782	NA	NA
86	IL_5DOX_103 ➜	1/1A/2652:2658,1/1A/2663:2668	NA	NA
87	IL_5DOX_104 ➜	1/1A/2680:2684,1/1A/2725:2727	NA	NA
88	IL_5DOX_105 ➜	1/1A/2687:2691,1/1A/2718:2722	NA	NA
89	IL_5DOX_107 ➜	1/1A/2737:2742,1/1A/2762:2767	NA	NA
90	IL_5DOX_108 ➜	1/1A/2838:2839,1/1A/2878:2880	NA	NA
91	IL_5DOX_109 ➜	1/1A/2843:2846,1/1A/2870:2874	NA	NA
92	IL_5DOX_110 ➜	1/1A/2847:2852,1/1A/2865:2869	NA	NA
93	IL_5DOX_111 ➜	1/1B/17:18,1/1B/65:67	NA	NA
94	IL_5DOX_113 ➜	1/1B/30:32,1/1B/50:54	NA	NA
95	IL_5DOX_114 ➜	1/1B/34:38,1/1B/44:48	NA	NA
96	IL_5DOX_115 ➜	1/1B/71:79,1/1B/98:106	NA	NA
97	IL_5DOX_116 ➜	1/1a/30:32,1/1a/552:553	NA	NA
98	IL_5DOX_117 ➜	1/1a/44:46,1/1a/395:398	NA	NA
99	IL_5DOX_118 ➜	1/1a/47:52,1/1a/359:361	NA	NA
100	IL_5DOX_119 ➜	1/1a/54:57,1/1a/355:357	NA	NA
101	IL_5DOX_121 ➜	1/1a/67:69,1/1a/100:102	NA	NA
102	IL_5DOX_122 ➜	1/1a/129:131,1/1a/231:232	NA	NA
103	IL_5DOX_123 ➜	1/1a/132:137,1/1a/226:230	NA	NA
104	IL_5DOX_126 ➜	1/1a/148:153,1/1a/168:174	NA	NA
105	IL_5DOX_127 ➜	1/1a/186:189,1/1a/189K:191	NA	NA
106	IL_5DOX_128 ➜	1/1a/242:247,1/1a/277:284	NA	NA
107	IL_5DOX_129 ➜	1/1a/249:252,1/1a/274:275	NA	NA
108	IL_5DOX_131 ➜	1/1a/367:369,1/1a/392:393	NA	NA
109	IL_5DOX_132 ➜	1/1a/371:375,1/1a/389:390	NA	NA
110	IL_5DOX_133 ➜	1/1a/375:377,1/1a/386:389	NA	NA
111	IL_5DOX_134 ➜	1/1a/409:417,1/1a/426:433	NA	NA
112	IL_5DOX_135 ➜	1/1a/446:450,1/1a/483:488	NA	NA
113	IL_5DOX_136 ➜	1/1a/450:456,1/1a/475:483	NA	NA
114	IL_5DOX_137 ➜	1/1a/504:511,1/1a/540:541	NA	NA
115	IL_5DOX_138 ➜	1/1a/515:521,1/1a/528:536	NA	NA
116	IL_5DOX_139 ➜	1/1a/569:575,1/1a/880:881	NA	NA
117	IL_5DOX_140 ➜	1/1a/580:584,1/1a/757:761	NA	NA
118	IL_5DOX_141 ➜	1/1a/594:596,1/1a/644:645	NA	NA
119	IL_5DOX_142 ➜	1/1a/597:598,1/1a/640:643	NA	NA
120	IL_5DOX_143 ➜	1/1a/605:612,1/1a/628:633	NA	NA
121	IL_5DOX_144 ➜	1/1a/654:655,1/1a/751:754	NA	NA
122	IL_5DOX_145 ➜	1/1a/657:658,1/1a/747:749	NA	NA
123	IL_5DOX_146 ➜	1/1a/662:666,1/1a/740:743	NA	NA
124	IL_5DOX_147 ➜	1/1a/673:678,1/1a/712:717	NA	NA
125	IL_5DOX_148 ➜	1/1a/683:688,1/1a/699:707	NA	NA
126	IL_5DOX_149 ➜	1/1a/774:778,1/1a/804:805	NA	NA
127	IL_5DOX_150 ➜	1/1a/779:783,1/1a/799:803	NA	NA
128	IL_5DOX_151 ➜	1/1a/835:837,1/1a/849:851	NA	NA
129	IL_5DOX_152 ➜	1/1a/887:894,1/1a/905:910	NA	NA
130	IL_5DOX_153 ➜	1/1a/922:923,1/1a/1393:1395	NA	NA
131	IL_5DOX_154 ➜	1/1a/925:927,1/1a/1390:1391	NA	NA
132	IL_5DOX_156 ➜	1/1a/953:954,1/1a/1226:1228	NA	NA
133	IL_5DOX_159 ➜	1/1a/1002:1007,1/1a/1022:1038	NA	NA
134	IL_5DOX_161 ➜	1/1a/1050:1052,1/1a/1206:1208	NA	NA
135	IL_5DOX_162 ➜	1/1a/1052:1056,1/1a/1204:1206	NA	NA
136	IL_5DOX_163 ➜	1/1a/1057:1058,1/1a/1199:1203	NA	NA
137	IL_5DOX_164 ➜	1/1a/1060:1061,1/1a/1195:1197	NA	NA
138	IL_5DOX_165 ➜	1/1a/1061:1063,1/1a/1193:1195	NA	NA
139	IL_5DOX_166 ➜	1/1a/1124:1127,1/1a/1145:1149	NA	NA
140	IL_5DOX_167 ➜	1/1a/1129:1132,1/1a/1142:1143	NA	NA
141	IL_5DOX_168 ➜	1/1a/1247:1253,1/1a/1284:1290	NA	NA
142	IL_5DOX_169 ➜	1/1a/1255:1258,1/1a/1277:1282	NA	NA
143	IL_5DOX_171 ➜	1/1a/1260:1262,1/1a/1273:1274	NA	NA
144	IL_5DOX_173 ➜	1/1a/1399:1401,1/1a/1501:1504	NA	NA
145	IL_5DOX_174 ➜	1/1a/1401:1405,1/1a/1496:1501	NA	NA
146	IL_5DOX_175 ➜	1/1a/1405:1409,1/1a/1491:1496	NA	NA
147	IL_5DOX_176 ➜	1/1a/1412:1414,1/1a/1486:1488	NA	NA
148	IL_5DOX_177 ➜	1/1a/1416:1419,1/1a/1481:1484	NA	NA
149	IL_5DOX_178 ➜	1/1a/1431:1435,1/1a/1466:1469	NA	NA
150	IL_5DOX_179 ➜	1/1a/1435:1437,1/1a/1464:1466	NA	NA
151	IL_5DOX_180 ➜	1/1a/1440:1443,1/1a/1459:1461	NA	NA
152	IL_5DOX_181 ➜	1/2A/24:30,1/2A/510:516	NA	NA
153	IL_5DOX_182 ➜	1/2A/36:37,1/2A/442:444	NA	NA
154	IL_5DOX_183 ➜	1/2A/42:43,1/2A/434:436	NA	NA
155	IL_5DOX_184 ➜	1/2A/81:85,1/2A/97:105	NA	NA
156	IL_5DOX_185 ➜	1/2A/183:184,1/2A/212:214	NA	NA
157	IL_5DOX_186 ➜	1/2A/188:194,1/2A/201:208	NA	NA
158	IL_5DOX_187 ➜	1/2A/239:245,1/2A/253:258	NA	NA
159	IL_5DOX_188 ➜	1/2A/272D:272F,1/2A/363D:364	NA	NA
160	IL_5DOX_189 ➜	1/2A/272J:279,1/2A/361:363	NA	NA
161	IL_5DOX_190 ➜	1/2A/280:284,1/2A/357:360	NA	NA
162	IL_5DOX_191 ➜	1/2A/288:290,1/2A/350:353	NA	NA
163	IL_5DOX_192 ➜	1/2A/293:295,1/2A/343:347	NA	NA
164	IL_5DOX_193 ➜	1/2A/481:484,1/2A/496:509	NA	NA
165	IL_5DOX_195 ➜	1/2A/606:610,1/2A/618:622	NA	NA
166	IL_5DOX_196 ➜	1/2A/672:674,1/2A/806:808	NA	NA
167	IL_5DOX_197 ➜	1/2A/674:678,1/2A/799:806	NA	NA
168	IL_5DOX_198 ➜	1/2A/697:698,1/2A/763:765	NA	NA
169	IL_5DOX_199 ➜	1/2A/702:703,1/2A/728:730	NA	NA
170	IL_5DOX_200 ➜	1/2A/703:707,1/2A/724:728	NA	NA
171	IL_5DOX_201 ➜	1/2A/738:741,1/2A/756:758	NA	NA
172	IL_5DOX_202 ➜	1/2A/775:777,1/2A/787:791	NA	NA
173	IL_5DOX_203 ➜	1/2A/837:838,1/2A/940:942	NA	NA
174	IL_5DOX_204 ➜	1/2A/844:846,1/2A/931:934	NA	NA
175	IL_5DOX_205 ➜	1/2A/846:850,1/2A/927:931	NA	NA
176	IL_5DOX_206 ➜	1/2A/858:862,1/2A/915:919	NA	NA
177	IL_5DOX_208 ➜	1/2A/864:868,1/2A/909:912	NA	NA
178	IL_5DOX_209 ➜	1/2A/870:872,1/2A/905:907	NA	NA
179	IL_5DOX_210 ➜	1/2A/875:880,1/2A/897:902	NA	NA
180	IL_5DOX_211 ➜	1/2A/880:882,1/2A/894:897	NA	NA
181	IL_5DOX_212 ➜	1/2A/952:954,1/2A/963:965	NA	NA
182	IL_5DOX_213 ➜	1/2A/994:996,1/2A/1159:1160	NA	NA
183	IL_5DOX_214 ➜	1/2A/998:1002,1/2A/1153:1157	NA	NA
184	IL_5DOX_215 ➜	1/2A/1004:1011,1/2A/1150:1151	NA	NA
185	IL_5DOX_216 ➜	1/2A/1011:1013,1/2A/1149:1150	NA	NA
186	IL_5DOX_217 ➜	1/2A/1018:1024,1/2A/1140:1144	NA	NA
187	IL_5DOX_218 ➜	1/2A/1024:1030,1/2A/1124:1140	NA	NA
188	IL_5DOX_219 ➜	1/2A/1031:1034,1/2A/1121:1123	NA	NA
189	IL_5DOX_223 ➜	1/2A/1196:1198,1/2A/1247:1250	NA	NA
190	IL_5DOX_224 ➜	1/2A/1202:1206,1/2A/1240:1243	NA	NA
191	IL_5DOX_225 ➜	1/2A/1208:1215,1/2A/1234:1238	NA	NA
192	IL_5DOX_226 ➜	1/2A/1219:1221,1/2A/1229:1230	NA	NA
193	IL_5DOX_227 ➜	1/2A/1262:1269,1/2A/2011:2017	NA	NA
194	IL_5DOX_228 ➜	1/2A/1310:1313,1/2A/1603:1604	NA	NA
195	IL_5DOX_229 ➜	1/2A/1319:1323,1/2A/1331:1333	NA	NA
196	IL_5DOX_231 ➜	1/2A/1357:1361,1/2A/1370:1374	NA	NA
197	IL_5DOX_233 ➜	1/2A/1415:1416,1/2A/1582:1587	NA	NA
198	IL_5DOX_234 ➜	1/2A/1417:1421,1/2A/1577:1581	NA	NA
199	IL_5DOX_235 ➜	1/2A/1433:1435,1/2A/1557:1560	NA	NA
200	IL_5DOX_236 ➜	1/2A/1437:1440,1/2A/1551:1555	NA	NA
201	IL_5DOX_237 ➜	1/2A/1448:1450,1/2A/1462:1463	NA	NA
202	IL_5DOX_238 ➜	1/2A/1450A:1451,1/2A/1459:1461	NA	NA
203	IL_5DOX_239 ➜	1/2A/1469:1473,1/2A/1518:1523	NA	NA
204	IL_5DOX_240 ➜	1/2A/1481:1482,1/2A/1506:1510	NA	NA
205	IL_5DOX_241 ➜	1/2A/1489:1491,1/2A/1499:1500	NA	NA
206	IL_5DOX_242 ➜	1/2A/1526:1529,1/2A/1540:1546	NA	NA
207	IL_5DOX_243 ➜	1/2A/1651:1656,1/2A/2004:2006	NA	NA
208	IL_5DOX_244 ➜	1/2A/1663:1665,1/2A/1995:1997	NA	NA
209	IL_5DOX_245 ➜	1/2A/1666:1669,1/2A/1993:1994	NA	NA
210	IL_5DOX_246 ➜	1/2A/1669:1674,1/2A/1990:1993	NA	NA
211	IL_5DOX_247 ➜	1/2A/1686:1691,1/2A/1696:1702	NA	NA
212	IL_5DOX_249 ➜	1/2A/1798:1804,1/2A/1813:1821	NA	NA
213	IL_5DOX_250 ➜	1/2A/1837:1840,1/2A/1902:1903	NA	NA
214	IL_5DOX_251 ➜	1/2A/1841:1842,1/2A/1898:1901	NA	NA
215	IL_5DOX_252 ➜	1/2A/1846:1849,1/2A/1893:1894	NA	NA
216	IL_5DOX_253 ➜	1/2A/1851:1855,1/2A/1887:1891	NA	NA
217	IL_5DOX_254 ➜	1/2A/1856:1860,1/2A/1882:1886	NA	NA
218	IL_5DOX_255 ➜	1/2A/1933:1934,1/2A/1964:1967	NA	NA
219	IL_5DOX_256 ➜	1/2A/1934:1945,1/2A/1961:1964	NA	NA
220	IL_5DOX_257 ➜	1/2A/2050:2052,1/2A/2617:2618	NA	NA
221	IL_5DOX_258 ➜	1/2A/2054:2057,1/2A/2611:2615	NA	NA
222	IL_5DOX_259 ➜	1/2A/2067:2069,1/2A/2442:2443	NA	NA
223	IL_5DOX_260 ➜	1/2A/2070:2071,1/2A/2438:2441	NA	NA
224	IL_5DOX_261 ➜	1/2A/2081:2083,1/2A/2236:2239	NA	NA
225	IL_5DOX_262 ➜	1/2A/2085:2087,1/2A/2232:2234	NA	NA
226	IL_5DOX_269 ➜	1/2A/2297:2299,1/2A/2317:2321	NA	NA
227	IL_5DOX_270 ➜	1/2A/2350:2353,1/2A/2364:2367	NA	NA
228	IL_5DOX_271 ➜	1/2A/2401:2403,1/2A/2414:2415	NA	NA
229	IL_5DOX_272 ➜	1/2A/2453:2454,1/2A/2498:2500	NA	NA
230	IL_5DOX_273 ➜	1/2A/2454:2455,1/2A/2496:2498	NA	NA
231	IL_5DOX_274 ➜	1/2A/2457:2459,1/2A/2493:2494	NA	NA
232	IL_5DOX_275 ➜	1/2A/2459:2461,1/2A/2489:2493	NA	NA
233	IL_5DOX_276 ➜	1/2A/2466:2470,1/2A/2480:2484	NA	NA
234	IL_5DOX_277 ➜	1/2A/2507:2508,1/2A/2580:2582	NA	NA
235	IL_5DOX_278 ➜	1/2A/2510:2512,1/2A/2574:2578	NA	NA
236	IL_5DOX_279 ➜	1/2A/2512:2513,1/2A/2571:2574	NA	NA
237	IL_5DOX_280 ➜	1/2A/2522:2523,1/2A/2540:2543	NA	NA
238	IL_5DOX_281 ➜	1/2A/2588:2590,1/2A/2604:2606	NA	NA
239	IL_5DOX_282 ➜	1/2A/2591:2592,1/2A/2601:2603	NA	NA
240	IL_5DOX_283 ➜	1/2A/2636:2640,1/2A/2774:2782	NA	NA
241	IL_5DOX_284 ➜	1/2A/2652:2658,1/2A/2663:2668	NA	NA
242	IL_5DOX_285 ➜	1/2A/2680:2684,1/2A/2725:2727	NA	NA
243	IL_5DOX_286 ➜	1/2A/2687:2691,1/2A/2718:2722	NA	NA
244	IL_5DOX_287 ➜	1/2A/2695:2696,1/2A/2711:2714	NA	NA
245	IL_5DOX_288 ➜	1/2A/2737:2742,1/2A/2762:2767	NA	NA
246	IL_5DOX_289 ➜	1/2A/2838:2839,1/2A/2878:2880	NA	NA
247	IL_5DOX_290 ➜	1/2A/2843:2846,1/2A/2870:2874	NA	NA
248	IL_5DOX_291 ➜	1/2A/2847:2852,1/2A/2865:2869	NA	NA
249	IL_5DOX_292 ➜	1/2B/17:18,1/2B/65:67	NA	NA
250	IL_5DOX_293 ➜	1/2B/23:28,1/2B/56:60	NA	NA
251	IL_5DOX_294 ➜	1/2B/28:32,1/2B/50:56	NA	NA
252	IL_5DOX_295 ➜	1/2B/34:38,1/2B/44:48	NA	NA
253	IL_5DOX_296 ➜	1/2B/71:79,1/2B/98:106	NA	NA
254	IL_5DOX_297 ➜	1/2a/30:32,1/2a/552:553	NA	NA
255	IL_5DOX_299 ➜	1/2a/47:52,1/2a/359:361	NA	NA
256	IL_5DOX_300 ➜	1/2a/54:57,1/2a/355:357	NA	NA
257	IL_5DOX_301 ➜	1/2a/63:66,1/2a/103:104	NA	NA
258	IL_5DOX_302 ➜	1/2a/67:69,1/2a/100:102	NA	NA
259	IL_5DOX_303 ➜	1/2a/129:131,1/2a/231:232	NA	NA
260	IL_5DOX_304 ➜	1/2a/132:136,1/2a/227:230	NA	NA
261	IL_5DOX_305 ➜	1/2a/148:153,1/2a/168:174	NA	NA
262	IL_5DOX_306 ➜	1/2a/186:188,1/2a/189L:191	NA	NA
263	IL_5DOX_307 ➜	1/2a/242:247,1/2a/277:284	NA	NA
264	IL_5DOX_308 ➜	1/2a/249:252,1/2a/274:275	NA	NA
265	IL_5DOX_309 ➜	1/2a/292:293,1/2a/304:308	NA	NA
266	IL_5DOX_310 ➜	1/2a/367:369,1/2a/392:393	NA	NA
267	IL_5DOX_311 ➜	1/2a/371:375,1/2a/389:390	NA	NA
268	IL_5DOX_312 ➜	1/2a/375:376,1/2a/387:389	NA	NA
269	IL_5DOX_313 ➜	1/2a/409:416,1/2a/427:433	NA	NA
270	IL_5DOX_314 ➜	1/2a/446:450,1/2a/483:488	NA	NA
271	IL_5DOX_315 ➜	1/2a/450:456,1/2a/475:483	NA	NA
272	IL_5DOX_317 ➜	1/2a/504:511,1/2a/540:541	NA	NA
273	IL_5DOX_318 ➜	1/2a/515:521,1/2a/528:536	NA	NA
274	IL_5DOX_319 ➜	1/2a/569:575,1/2a/880:881	NA	NA
275	IL_5DOX_320 ➜	1/2a/580:584,1/2a/757:761	NA	NA
276	IL_5DOX_321 ➜	1/2a/594:596,1/2a/644:645	NA	NA
277	IL_5DOX_322 ➜	1/2a/597:598,1/2a/640:643	NA	NA
278	IL_5DOX_323 ➜	1/2a/605:612,1/2a/628:633	NA	NA
279	IL_5DOX_324 ➜	1/2a/654:655,1/2a/751:754	NA	NA
280	IL_5DOX_325 ➜	1/2a/657:658,1/2a/747:749	NA	NA
281	IL_5DOX_326 ➜	1/2a/662:666,1/2a/740:743	NA	NA
282	IL_5DOX_327 ➜	1/2a/673:678,1/2a/712:717	NA	NA
283	IL_5DOX_328 ➜	1/2a/683:688,1/2a/699:707	NA	NA
284	IL_5DOX_329 ➜	1/2a/774:778,1/2a/804:805	NA	NA
285	IL_5DOX_331 ➜	1/2a/887:894,1/2a/905:910	NA	NA
286	IL_5DOX_332 ➜	1/2a/922:923,1/2a/1393:1395	NA	NA
287	IL_5DOX_333 ➜	1/2a/925:927,1/2a/1390:1391	NA	NA
288	IL_5DOX_334 ➜	1/2a/933:935,1/2a/1380:1384	NA	NA
289	IL_5DOX_335 ➜	1/2a/953:954,1/2a/1226:1228	NA	NA
290	IL_5DOX_337 ➜	1/2a/1050:1052,1/2a/1206:1208	NA	NA
291	IL_5DOX_338 ➜	1/2a/1052:1056,1/2a/1204:1206	NA	NA
292	IL_5DOX_339 ➜	1/2a/1057:1058,1/2a/1199:1203	NA	NA
293	IL_5DOX_340 ➜	1/2a/1060:1061,1/2a/1195:1197	NA	NA
294	IL_5DOX_343 ➜	1/2a/1129:1132,1/2a/1142:1143	NA	NA
295	IL_5DOX_345 ➜	1/2a/1255:1258,1/2a/1277:1282	NA	NA
296	IL_5DOX_346 ➜	1/2a/1259:1260,1/2a/1274:1276	NA	NA
297	IL_5DOX_347 ➜	1/2a/1260:1262,1/2a/1273:1274	NA	NA
298	IL_5DOX_349 ➜	1/2a/1399:1401,1/2a/1501:1504	NA	NA
299	IL_5DOX_350 ➜	1/2a/1401:1405,1/2a/1496:1501	NA	NA
300	IL_5DOX_351 ➜	1/2a/1405:1409,1/2a/1491:1496	NA	NA
301	IL_5DOX_352 ➜	1/2a/1412:1414,1/2a/1486:1488	NA	NA
302	IL_5DOX_353 ➜	1/2a/1416:1419,1/2a/1481:1484	NA	NA
303	IL_5DOX_354 ➜	1/2a/1431:1435,1/2a/1466:1469	NA	NA
304	IL_5DOX_355 ➜	1/2a/1435:1437,1/2a/1464:1466	NA	NA
305	IL_5DOX_356 ➜	1/2a/1440:1443,1/2a/1459:1461	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_5DOX_009 ➜	missing nts	NA
2	IL_5DOX_026 ➜	all high RSRZ	NA
3	IL_5DOX_027 ➜	all high RSRZ	NA
4	IL_5DOX_033 ➜	all high RSRZ	NA
5	IL_5DOX_043 ➜	missing nts	NA
6	IL_5DOX_044 ➜	missing nts	NA
7	IL_5DOX_066 ➜	all high RSRZ	NA
8	IL_5DOX_082 ➜	missing nts	NA
9	IL_5DOX_083 ➜	missing nts	NA
10	IL_5DOX_084 ➜	missing nts	NA
11	IL_5DOX_085 ➜	missing nts	NA
12	IL_5DOX_086 ➜	missing nts	NA
13	IL_5DOX_087 ➜	missing nts	NA
14	IL_5DOX_088 ➜	all high RSRZ	NA
15	IL_5DOX_091 ➜	all high RSRZ	NA
16	IL_5DOX_096 ➜	all high RSRZ	NA
17	IL_5DOX_099 ➜	all high RSRZ	NA
18	IL_5DOX_106 ➜	all high RSRZ	NA
19	IL_5DOX_112 ➜	incomplete nts	NA
20	IL_5DOX_120 ➜	all high RSRZ	NA
21	IL_5DOX_124 ➜	complementary	NA
22	IL_5DOX_125 ➜	complementary	NA
23	IL_5DOX_130 ➜	all high RSRZ	NA
24	IL_5DOX_155 ➜	all high RSRZ	NA
25	IL_5DOX_157 ➜	complementary	NA
26	IL_5DOX_158 ➜	complementary	NA
27	IL_5DOX_160 ➜	all high RSRZ	NA
28	IL_5DOX_170 ➜	all high RSRZ	NA
29	IL_5DOX_172 ➜	all high RSRZ	NA
30	IL_5DOX_194 ➜	all high RSRZ	NA
31	IL_5DOX_207 ➜	all high RSRZ	NA
32	IL_5DOX_220 ➜	missing nts	NA
33	IL_5DOX_221 ➜	missing nts	NA
34	IL_5DOX_222 ➜	missing nts	NA
35	IL_5DOX_230 ➜	all high RSRZ	NA
36	IL_5DOX_232 ➜	complementary	NA
37	IL_5DOX_248 ➜	all high RSRZ	NA
38	IL_5DOX_263 ➜	missing nts	NA
39	IL_5DOX_264 ➜	missing nts	NA
40	IL_5DOX_265 ➜	missing nts	NA
41	IL_5DOX_266 ➜	missing nts	NA
42	IL_5DOX_267 ➜	missing nts	NA
43	IL_5DOX_268 ➜	missing nts	NA
44	IL_5DOX_298 ➜	all high RSRZ	NA
45	IL_5DOX_316 ➜	complementary	NA
46	IL_5DOX_330 ➜	all high RSRZ	NA
47	IL_5DOX_336 ➜	all high RSRZ	NA
48	IL_5DOX_341 ➜	all high RSRZ	NA
49	IL_5DOX_342 ➜	all high RSRZ	NA
50	IL_5DOX_344 ➜	all high RSRZ	NA
51	IL_5DOX_348 ➜	all high RSRZ	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_5DOX_001 ➜	1/1A/683:689,1/1A/773:775,1/1A/791:794	NA	NA
2	J3_5DOX_002 ➜	1/1A/698:700,1/1A/732:736,1/1A/760:763	NA	NA
3	J3_5DOX_004 ➜	1/1A/1298:1303,1/1A/1625:1627,1/1A/1639:1642	NA	NA
4	J3_5DOX_005 ➜	1/1A/1306:1309,1/1A/1605:1611,1/1A/1620:1622	NA	NA
5	J3_5DOX_006 ➜	1/1A/2091:2093,1/1A/2196:2200,1/1A/2223:2228	NA	NA
6	J3_5DOX_008 ➜	1/1A/2517:2520,1/1A/2545:2547,1/1A/2561:2567	NA	NA
7	J3_5DOX_009 ➜	1/1a/826:829,1/1a/857:861,1/1a/868:874	NA	NA
8	J3_5DOX_010 ➜	1/1a/936:939,1/1a/1344:1350,1/1a/1372:1379	NA	NA
9	J3_5DOX_011 ➜	1/1a/943:946,1/1a/1235:1237,1/1a/1337:1340	NA	NA
10	J3_5DOX_012 ➜	1/1a/955:962,1/1a/973:984,1/1a/1221:1225	NA	NA
11	J3_5DOX_014 ➜	1/1a/1063:1068,1/1a/1107:1113,1/1a/1187:1193	NA	NA
12	J3_5DOX_015 ➜	1/1a/1116:1118,1/1a/1155:1161,1/1a/1175:1184	NA	NA
13	J3_5DOX_016 ➜	1/1a/1237:1241,1/1a/1296:1303,1/1a/1334:1337	NA	NA
14	J3_5DOX_017 ➜	1/2A/683:689,1/2A/773:775,1/2A/791:794	NA	NA
15	J3_5DOX_018 ➜	1/2A/698:700,1/2A/732:736,1/2A/760:763	NA	NA
16	J3_5DOX_020 ➜	1/2A/1298:1303,1/2A/1625:1627,1/2A/1639:1642	NA	NA
17	J3_5DOX_021 ➜	1/2A/1306:1309,1/2A/1605:1611,1/2A/1620:1622	NA	NA
18	J3_5DOX_022 ➜	1/2A/2091:2093,1/2A/2196:2200,1/2A/2223:2228	NA	NA
19	J3_5DOX_023 ➜	1/2A/2295:2297,1/2A/2321:2323,1/2A/2332:2337	NA	NA
20	J3_5DOX_024 ➜	1/2A/2517:2520,1/2A/2545:2547,1/2A/2561:2567	NA	NA
21	J3_5DOX_025 ➜	1/2a/826:829,1/2a/857:861,1/2a/868:874	NA	NA
22	J3_5DOX_026 ➜	1/2a/936:939,1/2a/1344:1350,1/2a/1372:1379	NA	NA
23	J3_5DOX_027 ➜	1/2a/943:946,1/2a/1235:1237,1/2a/1337:1340	NA	NA
24	J3_5DOX_028 ➜	1/2a/955:962,1/2a/973:984,1/2a/1221:1225	NA	NA
25	J3_5DOX_029 ➜	1/2a/989:997,1/2a/1044:1047,1/2a/1210:1216	NA	NA
26	J3_5DOX_030 ➜	1/2a/1002:1007,1/2a/1022:1029,1/2a/1032:1038	NA	NA
27	J3_5DOX_032 ➜	1/2a/1116:1118,1/2a/1155:1161,1/2a/1175:1184	NA	NA
28	J3_5DOX_033 ➜	1/2a/1237:1241,1/2a/1296:1303,1/2a/1334:1337	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_5DOX_003 ➜	missing nts	NA
2	J3_5DOX_007 ➜	all high RSRZ	NA
3	J3_5DOX_013 ➜	all high RSRZ	NA
4	J3_5DOX_019 ➜	missing nts	NA
5	J3_5DOX_031 ➜	all high RSRZ	NA

Coloring options: Nucleotide numbers

5DOX Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops