5DOX Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5DOX_001 | 1/1A/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 NA | |
| HL_5DOX_002 | 1/1A/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 NA | |
| HL_5DOX_003 | 1/1A/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 NA | |
| HL_5DOX_004 | 1/1A/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 NA | |
| HL_5DOX_005 | 1/1A/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_06192.3 | |
| HL_5DOX_006 | 1/1A/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 NA | |
| HL_5DOX_007 | 1/1A/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 NA | |
| HL_5DOX_008 | 1/1A/271I:271O | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.3 | |
| HL_5DOX_009 | 1/1A/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 NA | |
| HL_5DOX_010 | 1/1A/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 NA | |
| HL_5DOX_011 | 1/1A/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 NA | |
| HL_5DOX_012 | 1/1A/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 NA | |
| HL_5DOX_013 | 1/1A/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 NA | |
| HL_5DOX_014 | 1/1A/462:467 | GNRA Not in a motif group | homologous HL_5J7L_147 HL_85603.1 | |
| HL_5DOX_015 | 1/1A/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 NA | |
| HL_5DOX_017 | 1/1A/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 NA | |
| HL_5DOX_018 | 1/1A/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 NA | |
| HL_5DOX_019 | 1/1A/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 NA | |
| HL_5DOX_020 | 1/1A/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 NA | |
| HL_5DOX_022 | 1/1A/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 NA | |
| HL_5DOX_023 | 1/1A/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 NA | |
| HL_5DOX_024 | 1/1A/779:785 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.2 | |
| HL_5DOX_025 | 1/1A/826:831 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_55195.1 | |
| HL_5DOX_026 | 1/1A/881:895 | No text annotation Not in a motif group | ||
| HL_5DOX_027 | 1/1A/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 NA | |
| HL_5DOX_028 | 1/1A/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 NA | |
| HL_5DOX_031 | 1/1A/1171:1178 | No text annotation Not in a motif group | homologous HL_7RQB_031 NA | |
| HL_5DOX_032 | 1/1A/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 NA | |
| HL_5DOX_033 | 1/1A/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 NA | |
| HL_5DOX_034 | 1/1A/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 NA | |
| HL_5DOX_035 | 1/1A/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 NA | |
| HL_5DOX_036 | 1/1A/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 NA | |
| HL_5DOX_037 | 1/1A/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 NA | |
| HL_5DOX_038 | 1/1A/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 NA | |
| HL_5DOX_039 | 1/1A/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.6 | |
| HL_5DOX_040 | 1/1A/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 NA | |
| HL_5DOX_042 | 1/1A/1691:1696 | No text annotation Not in a motif group | geometric HL_7RQB_042 NA | |
| HL_5DOX_043 | 1/1A/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 NA | |
| HL_5DOX_044 | 1/1A/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 NA | |
| HL_5DOX_045 | 1/1A/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 NA | |
| HL_5DOX_046 | 1/1A/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 NA | |
| HL_5DOX_047 | 1/1A/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 NA | |
| HL_5DOX_048 | 1/1A/1909:1921 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
| HL_5DOX_049 | 1/1A/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 NA | |
| HL_5DOX_051 | 1/1A/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 NA | |
| HL_5DOX_053 | 1/1A/2205:2219 | No text annotation Not in a motif group | homologous HL_7RQB_052 NA | |
| HL_5DOX_054 | 1/1A/2248:2256 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.3 | |
| HL_5DOX_055 | 1/1A/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 NA | |
| HL_5DOX_056 | 1/1A/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 NA | |
| HL_5DOX_057 | 1/1A/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 NA | |
| HL_5DOX_058 | 1/1A/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 NA | |
| HL_5DOX_059 | 1/1A/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 NA | |
| HL_5DOX_060 | 1/1A/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 NA | |
| HL_5DOX_061 | 1/1A/2471:2479 | No text annotation Not in a motif group | homologous HL_7A0S_059 HL_06192.3 | |
| HL_5DOX_062 | 1/1A/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 NA | |
| HL_5DOX_063 | 1/1A/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_5DOX_064 | 1/1A/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 NA | |
| HL_5DOX_065 | 1/1A/2658:2663 | No text annotation Not in a motif group | homologous HL_7RQB_064 NA | |
| HL_5DOX_066 | 1/1A/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 NA | |
| HL_5DOX_067 | 1/1A/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 NA | |
| HL_5DOX_070 | 1/1A/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 NA | |
| HL_5DOX_071 | 1/1B/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 NA | |
| HL_5DOX_072 | 1/1B/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 NA | |
| HL_5DOX_073 | 1/1a/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5DOX_075 | 1/1a/156:165 | No text annotation Not in a motif group | ||
| HL_5DOX_076 | 1/1a/189C:189H | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_61849.1 | |
| HL_5DOX_077 | 1/1a/199:218 | No text annotation Not in a motif group | geometric HL_5TBW_015 HL_03345.1 | |
| HL_5DOX_078 | 1/1a/258:268 | No text annotation Not in a motif group | ||
| HL_5DOX_079 | 1/1a/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_85603.1 | |
| HL_5DOX_080 | 1/1a/320:333 | No text annotation Not in a motif group | homologous HL_6CZR_079 HL_81205.2 | |
| HL_5DOX_083 | 1/1a/419:424 | No text annotation Not in a motif group | homologous HL_6CZR_082 HL_29960.1 | |
| HL_5DOX_084 | 1/1a/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_85603.1 | |
| HL_5DOX_085 | 1/1a/521:528 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.6 | |
| HL_5DOX_087 | 1/1a/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.2 | |
| HL_5DOX_089 | 1/1a/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.2 | |
| HL_5DOX_090 | 1/1a/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_69858.1 | |
| HL_5DOX_091 | 1/1a/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_85603.1 | |
| HL_5DOX_092 | 1/1a/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_85603.1 | |
| HL_5DOX_093 | 1/1a/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5DOX_095 | 1/1a/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_85603.1 | |
| HL_5DOX_096 | 1/1a/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
| HL_5DOX_097 | 1/1a/1134:1140 | No text annotation Not in a motif group | ||
| HL_5DOX_098 | 1/1a/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_85603.1 | |
| HL_5DOX_102 | 1/1a/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_5DOX_103 | 1/1a/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_5DOX_104 | 1/2A/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 NA | |
| HL_5DOX_105 | 1/2A/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 NA | |
| HL_5DOX_106 | 1/2A/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_70546.2 | |
| HL_5DOX_107 | 1/2A/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 NA | |
| HL_5DOX_109 | 1/2A/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.3 | |
| HL_5DOX_110 | 1/2A/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 NA | |
| HL_5DOX_111 | 1/2A/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 NA | |
| HL_5DOX_112 | 1/2A/271I:271O | No text annotation Not in a motif group | ||
| HL_5DOX_113 | 1/2A/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 NA | |
| HL_5DOX_114 | 1/2A/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_70546.2 | |
| HL_5DOX_115 | 1/2A/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 NA | |
| HL_5DOX_116 | 1/2A/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 NA | |
| HL_5DOX_117 | 1/2A/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 NA | |
| HL_5DOX_118 | 1/2A/462:467 | GNRA Not in a motif group | homologous HL_5J7L_147 HL_85603.1 | |
| HL_5DOX_119 | 1/2A/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 NA | |
| HL_5DOX_121 | 1/2A/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_018 NA | |
| HL_5DOX_122 | 1/2A/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 NA | |
| HL_5DOX_123 | 1/2A/629:634 | GNRA Not in a motif group | homologous HL_4WF9_020 HL_85603.1 | |
| HL_5DOX_124 | 1/2A/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 NA | |
| HL_5DOX_126 | 1/2A/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 NA | |
| HL_5DOX_127 | 1/2A/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 NA | |
| HL_5DOX_130 | 1/2A/882:894 | No text annotation Not in a motif group | ||
| HL_5DOX_131 | 1/2A/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 NA | |
| HL_5DOX_132 | 1/2A/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 NA | |
| HL_5DOX_136 | 1/2A/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 NA | |
| HL_5DOX_137 | 1/2A/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 NA | |
| HL_5DOX_138 | 1/2A/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 NA | |
| HL_5DOX_139 | 1/2A/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 NA | |
| HL_5DOX_140 | 1/2A/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 NA | |
| HL_5DOX_141 | 1/2A/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 NA | |
| HL_5DOX_142 | 1/2A/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 NA | |
| HL_5DOX_144 | 1/2A/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.6 | |
| HL_5DOX_145 | 1/2A/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 NA | |
| HL_5DOX_146 | 1/2A/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 NA | |
| HL_5DOX_147 | 1/2A/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 NA | |
| HL_5DOX_148 | 1/2A/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 NA | |
| HL_5DOX_149 | 1/2A/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 NA | |
| HL_5DOX_150 | 1/2A/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 NA | |
| HL_5DOX_151 | 1/2A/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 NA | |
| HL_5DOX_152 | 1/2A/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 NA | |
| HL_5DOX_153 | 1/2A/1909:1921 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
| HL_5DOX_154 | 1/2A/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 NA | |
| HL_5DOX_155 | 1/2A/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 NA | |
| HL_5DOX_157 | 1/2A/2205:2219 | No text annotation Not in a motif group | homologous HL_7RQB_052 NA | |
| HL_5DOX_158 | 1/2A/2248:2256 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.3 | |
| HL_5DOX_159 | 1/2A/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 NA | |
| HL_5DOX_160 | 1/2A/2303:2313 | No text annotation Not in a motif group | ||
| HL_5DOX_161 | 1/2A/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 NA | |
| HL_5DOX_162 | 1/2A/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 NA | |
| HL_5DOX_163 | 1/2A/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 NA | |
| HL_5DOX_164 | 1/2A/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 NA | |
| HL_5DOX_165 | 1/2A/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 NA | |
| HL_5DOX_166 | 1/2A/2527:2536 | tRNA anticodon loop Not in a motif group | geometric HL_3W3S_002 HL_65167.1 | |
| HL_5DOX_167 | 1/2A/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_5DOX_168 | 1/2A/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 NA | |
| HL_5DOX_169 | 1/2A/2658:2663 | GNRA Not in a motif group | geometric HL_2OIU_001 HL_85603.1 | |
| HL_5DOX_170 | 1/2A/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 NA | |
| HL_5DOX_171 | 1/2A/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 NA | |
| HL_5DOX_173 | 1/2A/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 NA | |
| HL_5DOX_174 | 1/2A/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 NA | |
| HL_5DOX_175 | 1/2B/38:44 | No text annotation Not in a motif group | geometric HL_4V9F_071 HL_83767.1 | |
| HL_5DOX_176 | 1/2B/86:91 | No text annotation Not in a motif group | homologous HL_7A0S_070 HL_85603.1 | |
| HL_5DOX_177 | 1/2a/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5DOX_179 | 1/2a/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_85603.1 | |
| HL_5DOX_180 | 1/2a/189C:189H | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_61849.1 | |
| HL_5DOX_181 | 1/2a/200:217 | No text annotation Not in a motif group | homologous HL_6CZR_076 HL_34168.3 | |
| HL_5DOX_182 | 1/2a/258:268 | No text annotation Not in a motif group | geometric HL_4WSM_226 HL_22031.2 | |
| HL_5DOX_183 | 1/2a/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_85603.1 | |
| HL_5DOX_184 | 1/2a/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_5DOX_185 | 1/2a/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_29960.1 | |
| HL_5DOX_186 | 1/2a/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_85603.1 | |
| HL_5DOX_187 | 1/2a/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_29960.1 | |
| HL_5DOX_188 | 1/2a/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_85603.1 | |
| HL_5DOX_189 | 1/2a/521:528 | No text annotation Not in a motif group | homologous HL_4LFB_013 NA | |
| HL_5DOX_191 | 1/2a/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.2 | |
| HL_5DOX_193 | 1/2a/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.2 | |
| HL_5DOX_194 | 1/2a/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_69858.1 | |
| HL_5DOX_195 | 1/2a/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_85603.1 | |
| HL_5DOX_196 | 1/2a/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_85603.1 | |
| HL_5DOX_197 | 1/2a/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5DOX_200 | 1/2a/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_85603.1 | |
| HL_5DOX_202 | 1/2a/1134:1140 | No text annotation Not in a motif group | ||
| HL_5DOX_203 | 1/2a/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_85603.1 | |
| HL_5DOX_204 | 1/2a/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_85603.1 | |
| HL_5DOX_207 | 1/2a/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_5DOX_208 | 1/2a/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5DOX_016 | No text annotation | ||
| HL_5DOX_021 | No text annotation | ||
| HL_5DOX_029 | No text annotation | ||
| HL_5DOX_030 | No text annotation | ||
| HL_5DOX_041 | No text annotation | ||
| HL_5DOX_050 | No text annotation | ||
| HL_5DOX_052 | No text annotation | ||
| HL_5DOX_068 | No text annotation | ||
| HL_5DOX_069 | No text annotation | ||
| HL_5DOX_074 | No text annotation | ||
| HL_5DOX_081 | UNCG | ||
| HL_5DOX_082 | GNRA | ||
| HL_5DOX_086 | No text annotation | ||
| HL_5DOX_088 | Other HL | ||
| HL_5DOX_094 | GNRA | ||
| HL_5DOX_099 | Other HL | ||
| HL_5DOX_100 | No text annotation | ||
| HL_5DOX_101 | No text annotation | ||
| HL_5DOX_108 | No text annotation | ||
| HL_5DOX_120 | No text annotation | ||
| HL_5DOX_125 | No text annotation | ||
| HL_5DOX_128 | No text annotation | ||
| HL_5DOX_129 | No text annotation | ||
| HL_5DOX_133 | No text annotation | ||
| HL_5DOX_134 | No text annotation | ||
| HL_5DOX_135 | No text annotation | ||
| HL_5DOX_143 | No text annotation | ||
| HL_5DOX_156 | No text annotation | ||
| HL_5DOX_172 | No text annotation | ||
| HL_5DOX_178 | No text annotation | ||
| HL_5DOX_190 | No text annotation | ||
| HL_5DOX_192 | Other HL | ||
| HL_5DOX_198 | GNRA | ||
| HL_5DOX_199 | No text annotation | ||
| HL_5DOX_201 | No text annotation | ||
| HL_5DOX_205 | No text annotation | ||
| HL_5DOX_206 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5DOX_001 | 1/1A/24:30, 1/1A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 NA | |
| IL_5DOX_002 | 1/1A/36:37, 1/1A/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 NA | |
| IL_5DOX_003 | 1/1A/42:43, 1/1A/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 NA | |
| IL_5DOX_004 | 1/1A/81:85, 1/1A/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 NA | |
| IL_5DOX_005 | 1/1A/183:184, 1/1A/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 NA | |
| IL_5DOX_006 | 1/1A/188:194, 1/1A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 NA | |
| IL_5DOX_007 | 1/1A/239:245, 1/1A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 NA | |
| IL_5DOX_008 | 1/1A/272D:272E, 1/1A/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 NA | |
| IL_5DOX_010 | 1/1A/280:284, 1/1A/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 NA | |
| IL_5DOX_011 | 1/1A/288:290, 1/1A/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 NA | |
| IL_5DOX_012 | 1/1A/293:295, 1/1A/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 NA | |
| IL_5DOX_013 | 1/1A/481:484, 1/1A/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 NA | |
| IL_5DOX_014 | 1/1A/564:566, 1/1A/575:577 | No text annotation Not in a motif group | geometric IL_7RQB_015 NA | |
| IL_5DOX_015 | 1/1A/606:610, 1/1A/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 NA | |
| IL_5DOX_016 | 1/1A/672:674, 1/1A/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 NA | |
| IL_5DOX_017 | 1/1A/674:678, 1/1A/799:806 | No text annotation Not in a motif group | geometric IL_7RQB_018 NA | |
| IL_5DOX_018 | 1/1A/697:698, 1/1A/763:765 | Single bulged A Not in a motif group | homologous IL_7A0S_016 IL_37497.7 | |
| IL_5DOX_019 | 1/1A/702:703, 1/1A/728:730 | Single bulged G Not in a motif group | homologous IL_5J7L_262 IL_00225.4 | |
| IL_5DOX_020 | 1/1A/703:707, 1/1A/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 NA | |
| IL_5DOX_021 | 1/1A/738:741, 1/1A/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 NA | |
| IL_5DOX_022 | 1/1A/775:777, 1/1A/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 NA | |
| IL_5DOX_023 | 1/1A/837:838, 1/1A/940:942 | Single stack bend Not in a motif group | homologous IL_5J7L_266 IL_92001.2 | |
| IL_5DOX_024 | 1/1A/844:846, 1/1A/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 NA | |
| IL_5DOX_025 | 1/1A/846:850, 1/1A/927:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 NA | |
| IL_5DOX_028 | 1/1A/864:868, 1/1A/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 NA | |
| IL_5DOX_029 | 1/1A/870:872, 1/1A/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 NA | |
| IL_5DOX_030 | 1/1A/875:877, 1/1A/899:902 | Minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_031 NA | |
| IL_5DOX_031 | 1/1A/877:879, 1/1A/898:899 | Minor groove platform Not in a motif group | geometric IL_7RQB_032 NA | |
| IL_5DOX_032 | 1/1A/880:881, 1/1A/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 NA | |
| IL_5DOX_034 | 1/1A/994:996, 1/1A/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 NA | |
| IL_5DOX_035 | 1/1A/998:1002, 1/1A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 NA | |
| IL_5DOX_036 | 1/1A/1004:1011, 1/1A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7RQB_037 NA | |
| IL_5DOX_037 | 1/1A/1011:1013, 1/1A/1149:1150 | Single bulged U Not in a motif group | geometric IL_7RQB_038 NA | |
| IL_5DOX_038 | 1/1A/1018:1024, 1/1A/1140:1144 | No text annotation Not in a motif group | homologous IL_7RQB_039 NA | |
| IL_5DOX_039 | 1/1A/1024:1030, 1/1A/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 NA | |
| IL_5DOX_040 | 1/1A/1031:1034, 1/1A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 NA | |
| IL_5DOX_041 | 1/1A/1041:1043, 1/1A/1112:1114 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_018 IL_70707.3 | |
| IL_5DOX_042 | 1/1A/1043:1051, 1/1A/1108:1112 | Kink-turn Not in a motif group | geometric IL_7RQB_042 NA | |
| IL_5DOX_045 | 1/1A/1196:1198, 1/1A/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 NA | |
| IL_5DOX_046 | 1/1A/1202:1206, 1/1A/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 NA | |
| IL_5DOX_047 | 1/1A/1208:1215, 1/1A/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 NA | |
| IL_5DOX_048 | 1/1A/1219:1221, 1/1A/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 NA | |
| IL_5DOX_049 | 1/1A/1262:1269, 1/1A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 NA | |
| IL_5DOX_050 | 1/1A/1310:1313, 1/1A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 NA | |
| IL_5DOX_051 | 1/1A/1319:1323, 1/1A/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 NA | |
| IL_5DOX_052 | 1/1A/1351:1355, 1/1A/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 NA | |
| IL_5DOX_053 | 1/1A/1357:1361, 1/1A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 NA | |
| IL_5DOX_054 | 1/1A/1415:1416, 1/1A/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 NA | |
| IL_5DOX_055 | 1/1A/1417:1421, 1/1A/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 NA | |
| IL_5DOX_056 | 1/1A/1433:1435, 1/1A/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 NA | |
| IL_5DOX_057 | 1/1A/1437:1440, 1/1A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 NA | |
| IL_5DOX_058 | 1/1A/1448:1450, 1/1A/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 NA | |
| IL_5DOX_059 | 1/1A/1450A:1451, 1/1A/1459:1461 | Single bulged A Not in a motif group | geometric IL_7RQB_059 NA | |
| IL_5DOX_060 | 1/1A/1469:1473, 1/1A/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 NA | |
| IL_5DOX_061 | 1/1A/1481:1482, 1/1A/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 NA | |
| IL_5DOX_062 | 1/1A/1489:1491, 1/1A/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 NA | |
| IL_5DOX_063 | 1/1A/1526:1529, 1/1A/1540:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 NA | |
| IL_5DOX_064 | 1/1A/1651:1656, 1/1A/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 NA | |
| IL_5DOX_065 | 1/1A/1686:1691, 1/1A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 NA | |
| IL_5DOX_067 | 1/1A/1798:1804, 1/1A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 NA | |
| IL_5DOX_068 | 1/1A/1837:1840, 1/1A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 NA | |
| IL_5DOX_069 | 1/1A/1841:1842, 1/1A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.3 | |
| IL_5DOX_070 | 1/1A/1846:1849, 1/1A/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 NA | |
| IL_5DOX_071 | 1/1A/1851:1855, 1/1A/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 NA | |
| IL_5DOX_072 | 1/1A/1856:1860, 1/1A/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 NA | |
| IL_5DOX_073 | 1/1A/1933:1934, 1/1A/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 NA | |
| IL_5DOX_074 | 1/1A/1934:1945, 1/1A/1961:1964 | No text annotation Not in a motif group | homologous IL_7RQB_077 NA | |
| IL_5DOX_075 | 1/1A/2050:2052, 1/1A/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 NA | |
| IL_5DOX_076 | 1/1A/2054:2057, 1/1A/2611:2615 | No text annotation Not in a motif group | ||
| IL_5DOX_077 | 1/1A/2067:2069, 1/1A/2442:2443 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.17 | |
| IL_5DOX_078 | 1/1A/2070:2071, 1/1A/2438:2441 | Minor groove platform Not in a motif group | homologous IL_4WF9_081 IL_42622.5 | |
| IL_5DOX_079 | 1/1A/2081:2083, 1/1A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 NA | |
| IL_5DOX_080 | 1/1A/2085:2087, 1/1A/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 NA | |
| IL_5DOX_081 | 1/1A/2101:2103, 1/1A/2186:2188 | No text annotation Not in a motif group | geometric IL_6CZR_157 IL_86319.3 | |
| IL_5DOX_089 | 1/1A/2350:2353, 1/1A/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 NA | |
| IL_5DOX_090 | 1/1A/2401:2403, 1/1A/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 NA | |
| IL_5DOX_092 | 1/1A/2454:2455, 1/1A/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 NA | |
| IL_5DOX_093 | 1/1A/2457:2459, 1/1A/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.4 | |
| IL_5DOX_094 | 1/1A/2459:2461, 1/1A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 NA | |
| IL_5DOX_095 | 1/1A/2466:2470, 1/1A/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 NA | |
| IL_5DOX_097 | 1/1A/2510:2512, 1/1A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 NA | |
| IL_5DOX_098 | 1/1A/2512:2513, 1/1A/2571:2574 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 NA | |
| IL_5DOX_100 | 1/1A/2588:2590, 1/1A/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_5DOX_101 | 1/1A/2591:2592, 1/1A/2601:2603 | Single bulged A Not in a motif group | geometric IL_4V9F_090 IL_37497.7 | |
| IL_5DOX_102 | 1/1A/2636:2640, 1/1A/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 NA | |
| IL_5DOX_103 | 1/1A/2652:2658, 1/1A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 NA | |
| IL_5DOX_104 | 1/1A/2680:2684, 1/1A/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 NA | |
| IL_5DOX_105 | 1/1A/2687:2691, 1/1A/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 NA | |
| IL_5DOX_107 | 1/1A/2737:2742, 1/1A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 NA | |
| IL_5DOX_108 | 1/1A/2838:2839, 1/1A/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 NA | |
| IL_5DOX_109 | 1/1A/2843:2846, 1/1A/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 NA | |
| IL_5DOX_110 | 1/1A/2847:2852, 1/1A/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 NA | |
| IL_5DOX_111 | 1/1B/17:18, 1/1B/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 NA | |
| IL_5DOX_113 | 1/1B/30:32, 1/1B/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_5DOX_114 | 1/1B/34:38, 1/1B/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 NA | |
| IL_5DOX_115 | 1/1B/71:79, 1/1B/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 NA | |
| IL_5DOX_116 | 1/1a/30:32, 1/1a/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.4 | |
| IL_5DOX_117 | 1/1a/44:46, 1/1a/395:398 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_43275.2 | |
| IL_5DOX_118 | 1/1a/47:52, 1/1a/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_14177.1 | |
| IL_5DOX_119 | 1/1a/54:57, 1/1a/355:357 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 NA | |
| IL_5DOX_121 | 1/1a/67:69, 1/1a/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_86319.3 | |
| IL_5DOX_122 | 1/1a/129:131, 1/1a/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.3 | |
| IL_5DOX_123 | 1/1a/132:137, 1/1a/226:230 | No text annotation Not in a motif group | ||
| IL_5DOX_126 | 1/1a/148:153, 1/1a/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_5DOX_127 | 1/1a/186:189, 1/1a/189K:191 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_413D_001 IL_90802.1 | |
| IL_5DOX_128 | 1/1a/242:247, 1/1a/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_6CZR_123 IL_45067.3 | |
| IL_5DOX_129 | 1/1a/249:252, 1/1a/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_5DOX_131 | 1/1a/367:369, 1/1a/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.17 | |
| IL_5DOX_132 | 1/1a/371:375, 1/1a/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_5DOX_133 | 1/1a/375:377, 1/1a/386:389 | Single bulged G, near cWW Not in a motif group | homologous IL_6CZR_128 IL_52767.5 | |
| IL_5DOX_134 | 1/1a/409:417, 1/1a/426:433 | No text annotation Not in a motif group | homologous IL_6CZR_129 IL_58819.1 | |
| IL_5DOX_135 | 1/1a/446:450, 1/1a/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_5DOX_136 | 1/1a/450:456, 1/1a/475:483 | No text annotation Not in a motif group | geometric IL_6CZR_131 IL_30149.1 | |
| IL_5DOX_137 | 1/1a/504:511, 1/1a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.8 | |
| IL_5DOX_138 | 1/1a/515:521, 1/1a/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_5DOX_139 | 1/1a/569:575, 1/1a/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.1 | |
| IL_5DOX_140 | 1/1a/580:584, 1/1a/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_135 IL_17136.2 | |
| IL_5DOX_141 | 1/1a/594:596, 1/1a/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.4 | |
| IL_5DOX_142 | 1/1a/597:598, 1/1a/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.9 | |
| IL_5DOX_143 | 1/1a/605:612, 1/1a/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_5DOX_144 | 1/1a/654:655, 1/1a/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.3 | |
| IL_5DOX_145 | 1/1a/657:658, 1/1a/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.4 | |
| IL_5DOX_146 | 1/1a/662:666, 1/1a/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_5DOX_147 | 1/1a/673:678, 1/1a/712:717 | No text annotation Not in a motif group | homologous IL_5J7L_034 IL_04668.2 | |
| IL_5DOX_148 | 1/1a/683:688, 1/1a/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5DOX_149 | 1/1a/774:778, 1/1a/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_5DOX_150 | 1/1a/779:783, 1/1a/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.2 | |
| IL_5DOX_151 | 1/1a/835:837, 1/1a/849:851 | Isolated cWH basepair Not in a motif group | geometric IL_406D_002 IL_70707.3 | |
| IL_5DOX_152 | 1/1a/887:894, 1/1a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5DOX_153 | 1/1a/922:923, 1/1a/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.7 | |
| IL_5DOX_154 | 1/1a/925:927, 1/1a/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.4 | |
| IL_5DOX_156 | 1/1a/953:954, 1/1a/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.5 | |
| IL_5DOX_159 | 1/1a/1002:1007, 1/1a/1022:1038 | No text annotation Not in a motif group | ||
| IL_5DOX_161 | 1/1a/1050:1052, 1/1a/1206:1208 | No text annotation Not in a motif group | geometric IL_5Y7M_007 IL_70707.3 | |
| IL_5DOX_162 | 1/1a/1052:1056, 1/1a/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_5DOX_163 | 1/1a/1057:1058, 1/1a/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_80097.2 | |
| IL_5DOX_164 | 1/1a/1060:1061, 1/1a/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.17 | |
| IL_5DOX_165 | 1/1a/1061:1063, 1/1a/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_86319.3 | |
| IL_5DOX_166 | 1/1a/1124:1127, 1/1a/1145:1149 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.7 | |
| IL_5DOX_167 | 1/1a/1129:1132, 1/1a/1142:1143 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_5DOX_168 | 1/1a/1247:1253, 1/1a/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_5DOX_169 | 1/1a/1255:1258, 1/1a/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_5DOX_171 | 1/1a/1260:1262, 1/1a/1273:1274 | Minor groove platform Not in a motif group | homologous IL_4LFB_054 IL_80097.2 | |
| IL_5DOX_173 | 1/1a/1399:1401, 1/1a/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_5DOX_174 | 1/1a/1401:1405, 1/1a/1496:1501 | No text annotation Not in a motif group | homologous IL_4LFB_057 NA | |
| IL_5DOX_175 | 1/1a/1405:1409, 1/1a/1491:1496 | No text annotation Not in a motif group | homologous IL_6CZR_167 NA | |
| IL_5DOX_176 | 1/1a/1412:1414, 1/1a/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_86319.3 | |
| IL_5DOX_177 | 1/1a/1416:1419, 1/1a/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.11 | |
| IL_5DOX_178 | 1/1a/1431:1435, 1/1a/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.2 | |
| IL_5DOX_179 | 1/1a/1435:1437, 1/1a/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_86319.3 | |
| IL_5DOX_180 | 1/1a/1440:1443, 1/1a/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.3 | |
| IL_5DOX_181 | 1/2A/24:30, 1/2A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 NA | |
| IL_5DOX_182 | 1/2A/36:37, 1/2A/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 NA | |
| IL_5DOX_183 | 1/2A/42:43, 1/2A/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 NA | |
| IL_5DOX_184 | 1/2A/81:85, 1/2A/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 NA | |
| IL_5DOX_185 | 1/2A/183:184, 1/2A/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 NA | |
| IL_5DOX_186 | 1/2A/188:194, 1/2A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 NA | |
| IL_5DOX_187 | 1/2A/239:245, 1/2A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 NA | |
| IL_5DOX_188 | 1/2A/272D:272F, 1/2A/363D:364 | Major groove platform with extra pair Not in a motif group | geometric IL_5TBW_091 IL_63450.3 | |
| IL_5DOX_189 | 1/2A/272J:279, 1/2A/361:363 | No text annotation Not in a motif group | ||
| IL_5DOX_190 | 1/2A/280:284, 1/2A/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 NA | |
| IL_5DOX_191 | 1/2A/288:290, 1/2A/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 NA | |
| IL_5DOX_192 | 1/2A/293:295, 1/2A/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 NA | |
| IL_5DOX_193 | 1/2A/481:484, 1/2A/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 NA | |
| IL_5DOX_195 | 1/2A/606:610, 1/2A/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 NA | |
| IL_5DOX_196 | 1/2A/672:674, 1/2A/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 NA | |
| IL_5DOX_197 | 1/2A/674:678, 1/2A/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 NA | |
| IL_5DOX_198 | 1/2A/697:698, 1/2A/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 NA | |
| IL_5DOX_199 | 1/2A/702:703, 1/2A/728:730 | Single bulged G Not in a motif group | homologous IL_7RQB_020 NA | |
| IL_5DOX_200 | 1/2A/703:707, 1/2A/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 NA | |
| IL_5DOX_201 | 1/2A/738:741, 1/2A/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 NA | |
| IL_5DOX_202 | 1/2A/775:777, 1/2A/787:791 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 NA | |
| IL_5DOX_203 | 1/2A/837:838, 1/2A/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 NA | |
| IL_5DOX_204 | 1/2A/844:846, 1/2A/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 NA | |
| IL_5DOX_205 | 1/2A/846:850, 1/2A/927:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 NA | |
| IL_5DOX_206 | 1/2A/858:862, 1/2A/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 NA | |
| IL_5DOX_208 | 1/2A/864:868, 1/2A/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 NA | |
| IL_5DOX_209 | 1/2A/870:872, 1/2A/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 NA | |
| IL_5DOX_210 | 1/2A/875:880, 1/2A/897:902 | No text annotation Not in a motif group | ||
| IL_5DOX_211 | 1/2A/880:882, 1/2A/894:897 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_43275.2 | |
| IL_5DOX_212 | 1/2A/952:954, 1/2A/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 NA | |
| IL_5DOX_213 | 1/2A/994:996, 1/2A/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 NA | |
| IL_5DOX_214 | 1/2A/998:1002, 1/2A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 NA | |
| IL_5DOX_215 | 1/2A/1004:1011, 1/2A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.8 | |
| IL_5DOX_216 | 1/2A/1011:1013, 1/2A/1149:1150 | Single bulged U Not in a motif group | geometric IL_7RQB_038 NA | |
| IL_5DOX_217 | 1/2A/1018:1024, 1/2A/1140:1144 | No text annotation Not in a motif group | geometric IL_4V9F_040 IL_57188.4 | |
| IL_5DOX_218 | 1/2A/1024:1030, 1/2A/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 NA | |
| IL_5DOX_219 | 1/2A/1031:1034, 1/2A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 NA | |
| IL_5DOX_223 | 1/2A/1196:1198, 1/2A/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 NA | |
| IL_5DOX_224 | 1/2A/1202:1206, 1/2A/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 NA | |
| IL_5DOX_225 | 1/2A/1208:1215, 1/2A/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 NA | |
| IL_5DOX_226 | 1/2A/1219:1221, 1/2A/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 NA | |
| IL_5DOX_227 | 1/2A/1262:1269, 1/2A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 NA | |
| IL_5DOX_228 | 1/2A/1310:1313, 1/2A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 NA | |
| IL_5DOX_229 | 1/2A/1319:1323, 1/2A/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 NA | |
| IL_5DOX_231 | 1/2A/1357:1361, 1/2A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 NA | |
| IL_5DOX_233 | 1/2A/1415:1416, 1/2A/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 NA | |
| IL_5DOX_234 | 1/2A/1417:1421, 1/2A/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 NA | |
| IL_5DOX_235 | 1/2A/1433:1435, 1/2A/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 NA | |
| IL_5DOX_236 | 1/2A/1437:1440, 1/2A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 NA | |
| IL_5DOX_237 | 1/2A/1448:1450, 1/2A/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 NA | |
| IL_5DOX_238 | 1/2A/1450A:1451, 1/2A/1459:1461 | Single bulged A Not in a motif group | geometric IL_7RQB_059 NA | |
| IL_5DOX_239 | 1/2A/1469:1473, 1/2A/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 NA | |
| IL_5DOX_240 | 1/2A/1481:1482, 1/2A/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 NA | |
| IL_5DOX_241 | 1/2A/1489:1491, 1/2A/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 NA | |
| IL_5DOX_242 | 1/2A/1526:1529, 1/2A/1540:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 NA | |
| IL_5DOX_243 | 1/2A/1651:1656, 1/2A/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 NA | |
| IL_5DOX_244 | 1/2A/1663:1665, 1/2A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 NA | |
| IL_5DOX_245 | 1/2A/1666:1669, 1/2A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 NA | |
| IL_5DOX_246 | 1/2A/1669:1674, 1/2A/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 NA | |
| IL_5DOX_247 | 1/2A/1686:1691, 1/2A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 NA | |
| IL_5DOX_249 | 1/2A/1798:1804, 1/2A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 NA | |
| IL_5DOX_250 | 1/2A/1837:1840, 1/2A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 NA | |
| IL_5DOX_251 | 1/2A/1841:1842, 1/2A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 NA | |
| IL_5DOX_252 | 1/2A/1846:1849, 1/2A/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 NA | |
| IL_5DOX_253 | 1/2A/1851:1855, 1/2A/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 NA | |
| IL_5DOX_254 | 1/2A/1856:1860, 1/2A/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 NA | |
| IL_5DOX_255 | 1/2A/1933:1934, 1/2A/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_59677.3 | |
| IL_5DOX_256 | 1/2A/1934:1945, 1/2A/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_5DOX_257 | 1/2A/2050:2052, 1/2A/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 NA | |
| IL_5DOX_258 | 1/2A/2054:2057, 1/2A/2611:2615 | No text annotation Not in a motif group | homologous IL_7RQB_079 NA | |
| IL_5DOX_259 | 1/2A/2067:2069, 1/2A/2442:2443 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.17 | |
| IL_5DOX_260 | 1/2A/2070:2071, 1/2A/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 NA | |
| IL_5DOX_261 | 1/2A/2081:2083, 1/2A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 NA | |
| IL_5DOX_262 | 1/2A/2085:2087, 1/2A/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 NA | |
| IL_5DOX_269 | 1/2A/2297:2299, 1/2A/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 NA | |
| IL_5DOX_270 | 1/2A/2350:2353, 1/2A/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 NA | |
| IL_5DOX_271 | 1/2A/2401:2403, 1/2A/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 NA | |
| IL_5DOX_272 | 1/2A/2453:2454, 1/2A/2498:2500 | Single stack bend Not in a motif group | homologous IL_7A0S_083 IL_76488.5 | |
| IL_5DOX_273 | 1/2A/2454:2455, 1/2A/2496:2498 | Major groove platform Not in a motif group | geometric IL_7RQB_092 NA | |
| IL_5DOX_274 | 1/2A/2457:2459, 1/2A/2493:2494 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.4 | |
| IL_5DOX_275 | 1/2A/2459:2461, 1/2A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 NA | |
| IL_5DOX_276 | 1/2A/2466:2470, 1/2A/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 NA | |
| IL_5DOX_277 | 1/2A/2507:2508, 1/2A/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 NA | |
| IL_5DOX_278 | 1/2A/2510:2512, 1/2A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_340 IL_90933.3 | |
| IL_5DOX_279 | 1/2A/2512:2513, 1/2A/2571:2574 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 NA | |
| IL_5DOX_280 | 1/2A/2522:2523, 1/2A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 NA | |
| IL_5DOX_281 | 1/2A/2588:2590, 1/2A/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_5DOX_282 | 1/2A/2591:2592, 1/2A/2601:2603 | Single bulged A Not in a motif group | geometric IL_4V9F_090 IL_37497.7 | |
| IL_5DOX_283 | 1/2A/2636:2640, 1/2A/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 NA | |
| IL_5DOX_284 | 1/2A/2652:2658, 1/2A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 NA | |
| IL_5DOX_285 | 1/2A/2680:2684, 1/2A/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 NA | |
| IL_5DOX_286 | 1/2A/2687:2691, 1/2A/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 NA | |
| IL_5DOX_287 | 1/2A/2695:2696, 1/2A/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 NA | |
| IL_5DOX_288 | 1/2A/2737:2742, 1/2A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 NA | |
| IL_5DOX_289 | 1/2A/2838:2839, 1/2A/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 NA | |
| IL_5DOX_290 | 1/2A/2843:2846, 1/2A/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 NA | |
| IL_5DOX_291 | 1/2A/2847:2852, 1/2A/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 NA | |
| IL_5DOX_292 | 1/2B/17:18, 1/2B/65:67 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.7 | |
| IL_5DOX_293 | 1/2B/23:28, 1/2B/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_5DOX_294 | 1/2B/28:32, 1/2B/50:56 | No text annotation Not in a motif group | ||
| IL_5DOX_295 | 1/2B/34:38, 1/2B/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 NA | |
| IL_5DOX_296 | 1/2B/71:79, 1/2B/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 NA | |
| IL_5DOX_297 | 1/2a/30:32, 1/2a/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.4 | |
| IL_5DOX_299 | 1/2a/47:52, 1/2a/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_14177.1 | |
| IL_5DOX_300 | 1/2a/54:57, 1/2a/355:357 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.2 | |
| IL_5DOX_301 | 1/2a/63:66, 1/2a/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_5DOX_302 | 1/2a/67:69, 1/2a/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_86319.3 | |
| IL_5DOX_303 | 1/2a/129:131, 1/2a/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.3 | |
| IL_5DOX_304 | 1/2a/132:136, 1/2a/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.4 | |
| IL_5DOX_305 | 1/2a/148:153, 1/2a/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_5DOX_306 | 1/2a/186:188, 1/2a/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_86319.3 | |
| IL_5DOX_307 | 1/2a/242:247, 1/2a/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.3 | |
| IL_5DOX_308 | 1/2a/249:252, 1/2a/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_5DOX_309 | 1/2a/292:293, 1/2a/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5DOX_310 | 1/2a/367:369, 1/2a/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.17 | |
| IL_5DOX_311 | 1/2a/371:375, 1/2a/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_5DOX_312 | 1/2a/375:376, 1/2a/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.4 | |
| IL_5DOX_313 | 1/2a/409:416, 1/2a/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5DOX_314 | 1/2a/446:450, 1/2a/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
| IL_5DOX_315 | 1/2a/450:456, 1/2a/475:483 | No text annotation Not in a motif group | homologous IL_6CZR_131 IL_30149.1 | |
| IL_5DOX_317 | 1/2a/504:511, 1/2a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.8 | |
| IL_5DOX_318 | 1/2a/515:521, 1/2a/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_5DOX_319 | 1/2a/569:575, 1/2a/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.1 | |
| IL_5DOX_320 | 1/2a/580:584, 1/2a/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.2 | |
| IL_5DOX_321 | 1/2a/594:596, 1/2a/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.4 | |
| IL_5DOX_322 | 1/2a/597:598, 1/2a/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.9 | |
| IL_5DOX_323 | 1/2a/605:612, 1/2a/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_5DOX_324 | 1/2a/654:655, 1/2a/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.3 | |
| IL_5DOX_325 | 1/2a/657:658, 1/2a/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.4 | |
| IL_5DOX_326 | 1/2a/662:666, 1/2a/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_5DOX_327 | 1/2a/673:678, 1/2a/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.2 | |
| IL_5DOX_328 | 1/2a/683:688, 1/2a/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5DOX_329 | 1/2a/774:778, 1/2a/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_5DOX_331 | 1/2a/887:894, 1/2a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5DOX_332 | 1/2a/922:923, 1/2a/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.7 | |
| IL_5DOX_333 | 1/2a/925:927, 1/2a/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.4 | |
| IL_5DOX_334 | 1/2a/933:935, 1/2a/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_5DOX_335 | 1/2a/953:954, 1/2a/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.5 | |
| IL_5DOX_337 | 1/2a/1050:1052, 1/2a/1206:1208 | No text annotation Not in a motif group | homologous IL_4LFB_043 NA | |
| IL_5DOX_338 | 1/2a/1052:1056, 1/2a/1204:1206 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_5DOX_339 | 1/2a/1057:1058, 1/2a/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_80097.2 | |
| IL_5DOX_340 | 1/2a/1060:1061, 1/2a/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.17 | |
| IL_5DOX_343 | 1/2a/1129:1132, 1/2a/1142:1143 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_5DOX_345 | 1/2a/1255:1258, 1/2a/1277:1282 | No text annotation Not in a motif group | homologous IL_6CZR_161 IL_75461.4 | |
| IL_5DOX_346 | 1/2a/1259:1260, 1/2a/1274:1276 | Not an internal loop Not in a motif group | homologous IL_4LFB_053 IL_80097.2 | |
| IL_5DOX_347 | 1/2a/1260:1262, 1/2a/1273:1274 | Minor groove platform Not in a motif group | geometric IL_4LFB_054 IL_80097.2 | |
| IL_5DOX_349 | 1/2a/1399:1401, 1/2a/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_5DOX_350 | 1/2a/1401:1405, 1/2a/1496:1501 | No text annotation Not in a motif group | ||
| IL_5DOX_351 | 1/2a/1405:1409, 1/2a/1491:1496 | No text annotation Not in a motif group | ||
| IL_5DOX_352 | 1/2a/1412:1414, 1/2a/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_86319.3 | |
| IL_5DOX_353 | 1/2a/1416:1419, 1/2a/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.11 | |
| IL_5DOX_354 | 1/2a/1431:1435, 1/2a/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.2 | |
| IL_5DOX_355 | 1/2a/1435:1437, 1/2a/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_86319.3 | |
| IL_5DOX_356 | 1/2a/1440:1443, 1/2a/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5DOX_009 | No text annotation | ||
| IL_5DOX_026 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5DOX_027 | Minor groove platform | ||
| IL_5DOX_033 | No text annotation | ||
| IL_5DOX_043 | No text annotation | ||
| IL_5DOX_044 | No text annotation | ||
| IL_5DOX_066 | Single bulged A | ||
| IL_5DOX_082 | No text annotation | ||
| IL_5DOX_083 | No text annotation | ||
| IL_5DOX_084 | No text annotation | ||
| IL_5DOX_085 | No text annotation | ||
| IL_5DOX_086 | Kink-turn | ||
| IL_5DOX_087 | No text annotation | ||
| IL_5DOX_088 | Isolated tHS basepair with bulges | ||
| IL_5DOX_091 | Single stack bend | ||
| IL_5DOX_096 | Major groove platform | ||
| IL_5DOX_099 | Minor groove platform with intercalation | ||
| IL_5DOX_106 | Multiple bulged bases | ||
| IL_5DOX_112 | No text annotation | ||
| IL_5DOX_120 | Multiple bulged bases | ||
| IL_5DOX_124 | Tandem non-canonical cWW pairs | ||
| IL_5DOX_125 | No text annotation | ||
| IL_5DOX_130 | C-loop | ||
| IL_5DOX_155 | Minor groove platform | ||
| IL_5DOX_157 | No text annotation | ||
| IL_5DOX_158 | UU cWW | ||
| IL_5DOX_160 | Single bulged U | ||
| IL_5DOX_170 | Not an internal loop | ||
| IL_5DOX_172 | No text annotation | ||
| IL_5DOX_194 | No text annotation | ||
| IL_5DOX_207 | Minor groove platform | ||
| IL_5DOX_220 | No text annotation | ||
| IL_5DOX_221 | No text annotation | ||
| IL_5DOX_222 | No text annotation | ||
| IL_5DOX_230 | UAA/GAN | ||
| IL_5DOX_232 | No text annotation | ||
| IL_5DOX_248 | Single bulged A | ||
| IL_5DOX_263 | No text annotation | ||
| IL_5DOX_264 | No text annotation | ||
| IL_5DOX_265 | No text annotation | ||
| IL_5DOX_266 | No text annotation | ||
| IL_5DOX_267 | No text annotation | ||
| IL_5DOX_268 | No text annotation | ||
| IL_5DOX_298 | Single bulged A | ||
| IL_5DOX_316 | UG cWW | ||
| IL_5DOX_330 | tSH-tHW-tHS | ||
| IL_5DOX_336 | Single bulged U | ||
| IL_5DOX_341 | No text annotation | ||
| IL_5DOX_342 | Minor groove platform | ||
| IL_5DOX_344 | No text annotation | ||
| IL_5DOX_348 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5DOX_001 | 1/1A/683:689, 1/1A/773:775, 1/1A/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_5DOX_002 | 1/1A/698:700, 1/1A/732:736, 1/1A/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_5DOX_004 | 1/1A/1298:1303, 1/1A/1625:1627, 1/1A/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_5DOX_005 | 1/1A/1306:1309, 1/1A/1605:1611, 1/1A/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_5DOX_006 | 1/1A/2091:2093, 1/1A/2196:2200, 1/1A/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_5DOX_008 | 1/1A/2517:2520, 1/1A/2545:2547, 1/1A/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_5DOX_009 | 1/1a/826:829, 1/1a/857:861, 1/1a/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_5DOX_010 | 1/1a/936:939, 1/1a/1344:1350, 1/1a/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_5DOX_011 | 1/1a/943:946, 1/1a/1235:1237, 1/1a/1337:1340 | No text annotation Not in a motif group | ||
| J3_5DOX_012 | 1/1a/955:962, 1/1a/973:984, 1/1a/1221:1225 | No text annotation Not in a motif group | ||
| J3_5DOX_014 | 1/1a/1063:1068, 1/1a/1107:1113, 1/1a/1187:1193 | No text annotation Not in a motif group | ||
| J3_5DOX_015 | 1/1a/1116:1118, 1/1a/1155:1161, 1/1a/1175:1184 | No text annotation Not in a motif group | ||
| J3_5DOX_016 | 1/1a/1237:1241, 1/1a/1296:1303, 1/1a/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
| J3_5DOX_017 | 1/2A/683:689, 1/2A/773:775, 1/2A/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_5DOX_018 | 1/2A/698:700, 1/2A/732:736, 1/2A/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_5DOX_020 | 1/2A/1298:1303, 1/2A/1625:1627, 1/2A/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_5DOX_021 | 1/2A/1306:1309, 1/2A/1605:1611, 1/2A/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_5DOX_022 | 1/2A/2091:2093, 1/2A/2196:2200, 1/2A/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_5DOX_023 | 1/2A/2295:2297, 1/2A/2321:2323, 1/2A/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_5DOX_024 | 1/2A/2517:2520, 1/2A/2545:2547, 1/2A/2561:2567 | No text annotation Not in a motif group | ||
| J3_5DOX_025 | 1/2a/826:829, 1/2a/857:861, 1/2a/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_5DOX_026 | 1/2a/936:939, 1/2a/1344:1350, 1/2a/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_5DOX_027 | 1/2a/943:946, 1/2a/1235:1237, 1/2a/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_5DOX_028 | 1/2a/955:962, 1/2a/973:984, 1/2a/1221:1225 | No text annotation Not in a motif group | ||
| J3_5DOX_029 | 1/2a/989:997, 1/2a/1044:1047, 1/2a/1210:1216 | No text annotation Not in a motif group | ||
| J3_5DOX_030 | 1/2a/1002:1007, 1/2a/1022:1029, 1/2a/1032:1038 | No text annotation Not in a motif group | ||
| J3_5DOX_032 | 1/2a/1116:1118, 1/2a/1155:1161, 1/2a/1175:1184 | No text annotation Not in a motif group | ||
| J3_5DOX_033 | 1/2a/1237:1241, 1/2a/1296:1303, 1/2a/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5DOX_003 | No text annotation | ||
| J3_5DOX_007 | No text annotation | ||
| J3_5DOX_013 | No text annotation | ||
| J3_5DOX_019 | No text annotation | ||
| J3_5DOX_031 | No text annotation |
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