3JCJ Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/0/38:44 | NA | NA | ||
| 1/0/86:90 | NA | NA | ||
| 1/A/59:68 | geometric HL_5J7L_134 | NA HL_29414.1* | ||
| 1/A/87:95 | geometric HL_5J7L_135 | NA HL_17926.5* | ||
| 1/A/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
| 1/A/136:143 | NA | NA | ||
| 1/A/158:168 | geometric HL_5J7L_138 | NA HL_81820.1* | ||
| 1/A/194:201 | geometric HL_4WF9_006 | NA HL_23481.5* | ||
| 1/A/225:230 | geometric HL_5J7L_140 | NA HL_35894.3* | ||
| 1/A/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/A/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
| 1/A/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
| 1/A/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/A/381:393 | NA | NA | ||
| 1/A/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/A/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/A/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/A/543:550 | homologous HL_7RQB_017 | NA | ||
| 1/A/566:575 | T-loop with 2 stacked bulged bases geometric HL_5J7L_150 | NA HL_33239.17* | ||
| 1/A/611:617 | geometric HL_5J7L_151 | NA HL_25660.1* | ||
| 1/A/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/A/641:647 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
| 1/A/779:785 | geometric HL_5U3G_001 | NA HL_40469.1* | ||
| 1/A/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/A/954:963 | geometric HL_3RG5_006 | NA HL_83315.1* | ||
| 1/A/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
| 1/A/1172:1177 | geometric HL_4V88_198 | NA HL_30541.1* | ||
| 1/A/1222:1227 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/A/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/A/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
| 1/A/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/A/1389:1398 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
| 1/A/1451:1459 | homologous HL_7RQB_037 | NA HL_71540.1* | ||
| 1/A/1492:1498 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
| 1/A/1533:1538 | UNCG geometric HL_5J7L_011 | NA HL_79299.11* | ||
| 1/A/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/A/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/A/1630:1636 | GNRA with one bulged base geometric HL_5J7L_174 | NA HL_02361.6* | ||
| 1/A/1725:1735 | geometric HL_4V90_032 | NA HL_88918.1* | ||
| 1/A/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/A/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
| 1/A/2658:2663 | homologous HL_7RQB_064 | NA HL_43074.18* | ||
| 1/A/2701:2706 | Ribsomal LSU H95 geometric HL_5J7L_198 | NA HL_67719.1* | ||
| 1/A/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/A/2795:2801 | Other HL geometric HL_5J7L_200 | NA HL_96776.3* | ||
| 1/A/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/A/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
| 1/g/12:22 | NA | NA | ||
| 1/g/83:86 | NA | NA | ||
| 1/g/158:163 | NA | NA | ||
| 1/g/186:191 | NA | NA | ||
| 1/g/203:214 | NA | NA | ||
| 1/g/259:267 | NA | NA | ||
| 1/g/296:301 | NA | NA | ||
| 1/g/320:333 | NA | NA | ||
| 1/g/342:347 | NA | NA | ||
| 1/g/379:384 | NA | NA | ||
| 1/g/419:424 | NA | NA | ||
| 1/g/462:470 | NA | NA | ||
| 1/g/522:527 | NA | NA | ||
| 1/g/617:623 | NA | NA | ||
| 1/g/689:698 | NA | NA | ||
| 1/g/726:731 | NA | NA | ||
| 1/g/786:796 | NA | NA | ||
| 1/g/840:846 | NA | NA | ||
| 1/g/862:867 | NA | NA | ||
| 1/g/897:902 | NA | NA | ||
| 1/g/963:972 | NA | NA | ||
| 1/g/1012:1017 | NA | NA | ||
| 1/g/1028:1033 | NA | NA | ||
| 1/g/1076:1081 | NA | NA | ||
| 1/g/1089:1096 | NA | NA | ||
| 1/g/1134:1140 | NA | NA | ||
| 1/g/1165:1171 | NA | NA | ||
| 1/g/1265:1270 | NA | NA | ||
| 1/g/1314:1323 | NA | NA | ||
| 1/g/1355:1367 | NA | NA | ||
| 1/g/1449:1454 | NA | NA | ||
| 1/g/1515:1520 | NA | NA | ||
| 1/v/13:22 | NA | NA | ||
| 1/v/31:39 | NA | NA | ||
| 1/v/52:62 | NA | NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3JCJ_023 | homologous HL_7RQB_022 | ||
| HL_3JCJ_024 | homologous HL_7RQB_023 | ||
| HL_3JCJ_027 | NA | ||
| HL_3JCJ_030 | homologous HL_7RQB_029 | ||
| HL_3JCJ_031 | homologous HL_7RQB_030 | ||
| HL_3JCJ_044 | UNCG geometric HL_4PMI_004 | ||
| HL_3JCJ_047 | homologous HL_7RQB_045 | ||
| HL_3JCJ_048 | homologous HL_7RQB_046 | ||
| HL_3JCJ_049 | Other HL geometric HL_5J7L_180 | ||
| HL_3JCJ_050 | geometric HL_5TBW_049 | ||
| HL_3JCJ_051 | homologous HL_7RQB_049 | ||
| HL_3JCJ_053 | NA | ||
| HL_3JCJ_054 | geometric HL_5J7L_185 | ||
| HL_3JCJ_055 | homologous HL_7RQB_053 | ||
| HL_3JCJ_056 | homologous HL_7RQB_054 | ||
| HL_3JCJ_057 | homologous HL_7RQB_055 | ||
| HL_3JCJ_058 | geometric HL_2ZZM_002 | ||
| HL_3JCJ_059 | geometric HL_7RQB_047 | ||
| HL_3JCJ_060 | homologous HL_7RQB_058 | ||
| HL_3JCJ_061 | homologous HL_7RQB_059 | ||
| HL_3JCJ_062 | homologous HL_7RQB_060 | ||
| HL_3JCJ_063 | homologous HL_7RQB_061 | ||
| HL_3JCJ_064 | geometric HL_5TBW_063 | ||
| HL_3JCJ_065 | homologous HL_7RQB_063 |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/0/17:18, 1/0/65:67 | NA | NA | ||
| 1/0/23:28, 1/0/56:60 | NA | NA | ||
| 1/0/30:32, 1/0/50:54 | NA | NA | ||
| 1/0/33:38, 1/0/44:49 | NA | NA | ||
| 1/0/71:79, 1/0/97:105 | NA | NA | ||
| 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW homologous IL_7RQB_001 | NA IL_66414.5* | ||
| 1/A/36:37, 1/A/442:444 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
| 1/A/43:44, 1/A/434:436 | Minor groove platform homologous IL_7RQB_003 | NA IL_06437.11* | ||
| 1/A/81:85, 1/A/97:105 | Kink-turn homologous IL_7RQB_004 | NA IL_29549.9* | ||
| 1/A/183:184, 1/A/212:214 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
| 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_006 | NA IL_04346.5* | ||
| 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007 | NA IL_35110.5* | ||
| 1/A/269:273, 1/A/364:370 | NA | NA | ||
| 1/A/274:281, 1/A/359:363 | geometric IL_5J7L_253 | NA IL_77870.1* | ||
| 1/A/293:295, 1/A/343:347 | homologous IL_7RQB_013 | NA IL_69440.1* | ||
| 1/A/481:484, 1/A/496:509 | homologous IL_7RQB_014 | NA IL_60992.5* | ||
| 1/A/536:539, 1/A/554:557 | Double sheared geometric IL_5J7L_256 | NA IL_09705.7* | ||
| 1/A/564:566, 1/A/575:577 | homologous IL_7RQB_015 | NA IL_01312.13* | ||
| 1/A/606:610, 1/A/618:622 | AAA cross-strand stack homologous IL_7RQB_016 | NA IL_56467.6* | ||
| 1/A/672:674, 1/A/806:808 | geometric IL_7RQB_017 | NA IL_01312.13* | ||
| 1/A/674:678, 1/A/799:806 | homologous IL_7RQB_018 | NA IL_17470.5* | ||
| 1/A/837:838, 1/A/940:942 | NA | NA | ||
| 1/A/844:848, 1/A/930:934 | NA | NA | ||
| 1/A/850:851, 1/A/926:928 | Single stack bend geometric IL_5J7L_269 | NA IL_04038.4* | ||
| 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge geometric IL_5J7L_270 | NA IL_93830.2* | ||
| 1/A/862:863, 1/A/913:915 | Single bulged G geometric IL_5J7L_271 | NA IL_59137.10* | ||
| 1/A/994:996, 1/A/1159:1160 | Single bulged C homologous IL_7RQB_035 | NA IL_61258.10* | ||
| 1/A/998:1002, 1/A/1153:1157 | UAA/GAN homologous IL_7RQB_036 | NA IL_53523.5* | ||
| 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot homologous IL_7RQB_037 | NA IL_15861.6* | ||
| 1/A/1011:1013, 1/A/1149:1150 | Single bulged U geometric IL_5J7L_279 | NA IL_83039.11* | ||
| 1/A/1018:1024, 1/A/1140:1144 | geometric IL_5J7L_280 | NA IL_57188.3* | ||
| 1/A/1024:1030, 1/A/1124:1140 | geometric IL_5J7L_281 | NA IL_22615.1* | ||
| 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair homologous IL_7RQB_045 | NA IL_67621.5* | ||
| 1/A/1202:1206, 1/A/1240:1243 | geometric IL_5J7L_287 | NA IL_91920.1* | ||
| 1/A/1208:1215, 1/A/1234:1238 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
| 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049 | NA IL_04346.5* | ||
| 1/A/1319:1323, 1/A/1331:1333 | C-loop homologous IL_7RQB_051 | NA IL_63596.4* | ||
| 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN geometric IL_5J7L_292 | NA IL_34907.2* | ||
| 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
| 1/A/1415:1416, 1/A/1582:1587 | geometric IL_5J7L_294 | NA IL_90348.1* | ||
| 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN homologous IL_7RQB_055 | NA IL_53523.5* | ||
| 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs geometric IL_5J7L_296 | NA IL_85877.10* | ||
| 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW homologous IL_7RQB_057 | NA IL_08757.3* | ||
| 1/A/1450:1451, 1/A/1459:1461 | Single bulged U geometric IL_5J7L_298 | NA IL_83039.11* | ||
| 1/A/1467:1471, 1/A/1520:1525 | tSH-tHH-tHS geometric IL_4V9F_056 | NA IL_62654.1* | ||
| 1/A/1474:1479, 1/A/1512:1517 | NA | NA | ||
| 1/A/1481:1482, 1/A/1507:1510 | geometric IL_5J7L_301 | NA IL_67474.3* | ||
| 1/A/1489:1491, 1/A/1499:1500 | Single bulged A homologous IL_7RQB_062 | NA IL_40508.4* | ||
| 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation geometric IL_5J7L_303 | NA IL_81389.2* | ||
| 1/A/1651:1656, 1/A/2004:2006 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
| 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn homologous IL_7RQB_065 | NA IL_54997.5* | ||
| 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW geometric IL_7RQB_066 | NA IL_80663.10* | ||
| 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH homologous IL_7RQB_067 | NA IL_01312.13* | ||
| 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge geometric IL_5J7L_309 | NA IL_88269.2* | ||
| 1/A/1720:1725, 1/A/1735:1740 | Triple sheared with non-canonical cWW geometric IL_7A0S_018 | NA IL_74353.1* | ||
| 1/A/2050:2052, 1/A/2617:2618 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
| 1/A/2054:2056, 1/A/2612:2615 | NA | NA | ||
| 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW homologous IL_7RQB_102 | NA IL_34907.2* | ||
| 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge geometric IL_7RQB_103 | NA IL_35110.5* | ||
| 1/A/2679:2685, 1/A/2724:2728 | geometric IL_4LFB_048 | NA IL_79393.8* | ||
| 1/A/2687:2691, 1/A/2718:2722 | homologous IL_7RQB_105 | NA IL_08296.3* | ||
| 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases homologous IL_7RQB_106 | NA IL_77034.1* | ||
| 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW homologous IL_7RQB_107 | NA IL_49767.4* | ||
| 1/A/2806:2811, 1/A/2889:2892 | geometric IL_5J7L_351 | NA IL_82988.1* | ||
| 1/A/2838:2839, 1/A/2878:2880 | Single bulged C homologous IL_7RQB_108 | NA IL_61258.10* | ||
| 1/A/2843:2846, 1/A/2870:2874 | homologous IL_7RQB_109 | NA IL_58764.1* | ||
| 1/A/2847:2852, 1/A/2865:2869 | homologous IL_7RQB_110 | NA IL_83162.3* | ||
| 1/g/30:32, 1/g/552:553 | NA | NA | ||
| 1/g/44:45, 1/g/396:398 | NA | NA | ||
| 1/g/47:52, 1/g/359:361 | NA | NA | ||
| 1/g/54:56, 1/g/356:357 | NA | NA | ||
| 1/g/63:67, 1/g/102:104 | NA | NA | ||
| 1/g/67:69, 1/g/99:102 | NA | NA | ||
| 1/g/70:73, 1/g/97:98 | NA | NA | ||
| 1/g/75:76, 1/g/93:95 | NA | NA | ||
| 1/g/79:82, 1/g/88:90 | NA | NA | ||
| 1/g/82:83, 1/g/86:88 | NA | NA | ||
| 1/g/128:131, 1/g/231:233 | NA | NA | ||
| 1/g/132:136, 1/g/227:230 | NA | NA | ||
| 1/g/144:146, 1/g/176:178 | NA | NA | ||
| 1/g/147:153, 1/g/168:175 | NA | NA | ||
| 1/g/242:247, 1/g/277:284 | NA | NA | ||
| 1/g/249:253, 1/g/273:275 | NA | NA | ||
| 1/g/292:293, 1/g/304:308 | NA | NA | ||
| 1/g/371:375, 1/g/389:390 | NA | NA | ||
| 1/g/375:376, 1/g/387:389 | NA | NA | ||
| 1/g/409:416, 1/g/427:433 | NA | NA | ||
| 1/g/440:442, 1/g/492:497 | NA | NA | ||
| 1/g/446:450, 1/g/483:488 | NA | NA | ||
| 1/g/450:455, 1/g/477:483 | NA | NA | ||
| 1/g/504:511, 1/g/540:541 | NA | NA | ||
| 1/g/515:521, 1/g/528:536 | NA | NA | ||
| 1/g/569:575, 1/g/880:881 | NA | NA | ||
| 1/g/580:584, 1/g/757:761 | NA | NA | ||
| 1/g/594:596, 1/g/644:645 | NA | NA | ||
| 1/g/597:598, 1/g/640:643 | NA | NA | ||
| 1/g/605:612, 1/g/628:633 | NA | NA | ||
| 1/g/654:655, 1/g/751:754 | NA | NA | ||
| 1/g/658:659, 1/g/746:748 | NA | NA | ||
| 1/g/662:666, 1/g/740:743 | NA | NA | ||
| 1/g/683:688, 1/g/699:707 | NA | NA | ||
| 1/g/774:778, 1/g/804:805 | NA | NA | ||
| 1/g/779:783, 1/g/799:803 | NA | NA | ||
| 1/g/887:894, 1/g/905:910 | NA | NA | ||
| 1/g/922:923, 1/g/1393:1395 | NA | NA | ||
| 1/g/925:927, 1/g/1390:1391 | NA | NA | ||
| 1/g/933:935, 1/g/1380:1384 | NA | NA | ||
| 1/g/953:954, 1/g/1226:1228 | NA | NA | ||
| 1/g/993:997, 1/g/1044:1045 | NA | NA | ||
| 1/g/998:999, 1/g/1041:1043 | NA | NA | ||
| 1/g/1048:1050, 1/g/1208:1209 | NA | NA | ||
| 1/g/1052:1056, 1/g/1204:1206 | NA | NA | ||
| 1/g/1057:1058, 1/g/1199:1203 | NA | NA | ||
| 1/g/1060:1061, 1/g/1195:1197 | NA | NA | ||
| 1/g/1061:1063, 1/g/1193:1195 | NA | NA | ||
| 1/g/1124:1128, 1/g/1144:1149 | NA | NA | ||
| 1/g/1129:1132, 1/g/1142:1143 | NA | NA | ||
| 1/g/1158:1161, 1/g/1175:1181 | NA | NA | ||
| 1/g/1246:1253, 1/g/1284:1291 | NA | NA | ||
| 1/g/1255:1258, 1/g/1277:1282 | NA | NA | ||
| 1/g/1259:1263, 1/g/1272:1276 | NA | NA | ||
| 1/g/1303:1308, 1/g/1329:1334 | NA | NA | ||
| 1/g/1399:1401, 1/g/1501:1504 | NA | NA | ||
| 1/g/1401:1404, 1/g/1497:1501 | NA | NA | ||
| 1/g/1405:1407, 1/g/1494:1496 | NA | NA | ||
| 1/g/1407:1409, 1/g/1491:1494 | NA | NA | ||
| 1/g/1412:1415, 1/g/1485:1488 | NA | NA | ||
| 1/g/1416:1419, 1/g/1481:1484 | NA | NA | ||
| 1/g/1430:1435, 1/g/1466:1470 | NA | NA | ||
| 1/g/1440:1442, 1/g/1460:1461 | NA | NA | ||
| 1/g/1445:1448, 1/g/1455:1457 | NA | NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3JCJ_022 | Single bulged A homologous IL_7RQB_019 | ||
| IL_3JCJ_023 | Single bulged G homologous IL_7RQB_020 | ||
| IL_3JCJ_024 | Triple sheared geometric IL_4V9F_027 | ||
| IL_3JCJ_025 | NA | ||
| IL_3JCJ_026 | Multiple bulged bases homologous IL_7RQB_023 | ||
| IL_3JCJ_032 | C-loop homologous IL_7RQB_029 | ||
| IL_3JCJ_033 | Isolated cWS basepair homologous IL_7RQB_030 | ||
| IL_3JCJ_034 | Triple sheared geometric IL_4WFL_001 | ||
| IL_3JCJ_035 | NA | ||
| IL_3JCJ_042 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | ||
| IL_3JCJ_043 | Tandem non-canonical cWW pairs geometric IL_5TBW_100 | ||
| IL_3JCJ_044 | Kink-turn homologous IL_7RQB_042 | ||
| IL_3JCJ_045 | NA | ||
| IL_3JCJ_046 | Major groove platform geometric IL_3OXE_003 | ||
| IL_3JCJ_068 | tSH-tSH-tHH-tHS homologous IL_7RQB_068 | ||
| IL_3JCJ_071 | Single bulged A homologous IL_7RQB_069 | ||
| IL_3JCJ_072 | Kink-turn related homologous IL_7RQB_070 | ||
| IL_3JCJ_073 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071 | ||
| IL_3JCJ_074 | Isolated non-canonical cWW with bulges geometric IL_5ML7_010 | ||
| IL_3JCJ_075 | Minor groove platform homologous IL_7RQB_073 | ||
| IL_3JCJ_076 | UAA/GAN related geometric IL_5J7L_317 | ||
| IL_3JCJ_077 | Multiple bulged bases homologous IL_7RQB_076 | ||
| IL_3JCJ_078 | geometric IL_7A0S_072 | ||
| IL_3JCJ_081 | Single bulged U homologous IL_7RQB_080 | ||
| IL_3JCJ_082 | Minor groove platform homologous IL_7RQB_081 | ||
| IL_3JCJ_083 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | ||
| IL_3JCJ_084 | homologous IL_7RQB_083 | ||
| IL_3JCJ_085 | Single bulged U geometric IL_5J7L_331 | ||
| IL_3JCJ_086 | Double sheared homologous IL_7RQB_089 | ||
| IL_3JCJ_087 | NA | ||
| IL_3JCJ_088 | Major groove platform geometric IL_4V9F_082 | ||
| IL_3JCJ_089 | Major groove platform with extra pair homologous IL_7RQB_093 | ||
| IL_3JCJ_090 | Major groove minor groove platform with extra cWW geometric IL_5J7L_337 | ||
| IL_3JCJ_091 | Triple sheared homologous IL_7RQB_095 | ||
| IL_3JCJ_092 | Major groove platform homologous IL_7RQB_096 | ||
| IL_3JCJ_093 | Isolated non-canonical cWW with bulges homologous IL_7RQB_097 | ||
| IL_3JCJ_094 | geometric IL_4WF9_096 | ||
| IL_3JCJ_095 | Minor groove platform with intercalation homologous IL_7RQB_099 | ||
| IL_3JCJ_096 | Single bulged A homologous IL_7RQB_101 |
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/0/10:16, 1/0/68:70, 1/0/106:110 | NA | NA | ||
| 1/A/30:31, 1/A/474:481, 1/A/509:510 | NA | NA | ||
| 1/A/55:57, 1/A/70:76, 1/A/110:115 | NA | NA | ||
| 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | homologous J3_7RQB_007 | NA | ||
| 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | homologous J3_7RQB_008 | NA | ||
| 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | NA | NA | ||
| 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | NA | NA | ||
| 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | NA | NA | ||
| 1/g/46:47, 1/g/361:369, 1/g/392:395 | NA | NA | ||
| 1/g/586:588, 1/g/651:654, 1/g/754:755 | NA | NA | ||
| 1/g/826:829, 1/g/857:861, 1/g/868:874 | NA | NA | ||
| 1/g/936:939, 1/g/1344:1350, 1/g/1372:1379 | NA | NA | ||
| 1/g/943:946, 1/g/1235:1237, 1/g/1337:1340 | NA | NA | ||
| 1/g/955:962, 1/g/973:984, 1/g/1221:1225 | NA | NA | ||
| 1/g/990:993, 1/g/1045:1047, 1/g/1210:1215 | NA | NA | ||
| 1/g/1002:1006, 1/g/1023:1028, 1/g/1033:1038 | NA | NA | ||
| 1/g/1063:1068, 1/g/1107:1113, 1/g/1187:1193 | NA | NA | ||
| 1/g/1073:1074, 1/g/1083:1087, 1/g/1098:1102 | NA | NA | ||
| 1/g/1116:1118, 1/g/1155:1158, 1/g/1181:1184 | NA | NA | ||
| 1/g/1237:1241, 1/g/1296:1303, 1/g/1334:1337 | NA | NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3JCJ_004 | NA | ||
| J3_3JCJ_005 | NA | ||
| J3_3JCJ_006 | NA | ||
| J3_3JCJ_010 | homologous J3_7RQB_010 | ||
| J3_3JCJ_011 | NA | ||
| J3_3JCJ_012 | NA |
Coloring options: