Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V8X_0011/AA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4V8X_0021/AA/77:92No text annotation
Not in a motif group
HL_4V8X_0031/AA/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.1
HL_4V8X_0041/AA/189C:189HNo text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_10278.1
HL_4V8X_0051/AA/201:216No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_56691.2
HL_4V8X_0061/AA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4V8X_0071/AA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_4V8X_0081/AA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4V8X_0091/AA/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_4V8X_0101/AA/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_4V8X_0111/AA/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_4V8X_0121/AA/458:473No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4V8X_0131/AA/522:527No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_4V8X_0141/AA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_4V8X_0151/AA/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_4V8X_0161/AA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_4V8X_0171/AA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4V8X_0181/AA/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.1
HL_4V8X_0191/AA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_4V8X_0201/AA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_4V8X_0211/AA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V8X_0221/AA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_4V8X_0231/AA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_4V8X_0241/AA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V8X_0251/AA/1128:1143No text annotation
Not in a motif group
HL_4V8X_0261/AA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_4V8X_0271/AA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_4V8X_0281/AA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4V8X_0291/AA/1355:1367No text annotation
Not in a motif group
HL_4V8X_0301/AA/1445:1457UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_4V8X_0311/AA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V8X_0321/AV/13:22No text annotation
Not in a motif group
homologous
HL_1QF6_001
NA
HL_4V8X_0331/AV/31:39No text annotation
Not in a motif group
homologous
HL_6CFJ_107
NA
HL_4V8X_0341/AV/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4WT8_217
HL_22280.1
HL_4V8X_0351/AW/12:23No text annotation
Not in a motif group
homologous
HL_1SER_001
NA
HL_4V8X_0361/AW/30:40No text annotation
Not in a motif group
HL_4V8X_0371/AW/53:61T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_4YCO_003
HL_22280.1
HL_4V8X_0381/BA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4V8X_0391/BA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_4V8X_0401/BA/123:128No text annotation
Not in a motif group
homologous
HL_7RQB_003
HL_75407.1
HL_4V8X_0411/BA/139:142ANo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_4V8X_0431/BA/194:201No text annotation
Not in a motif group
geometric
HL_5J7L_139
HL_06192.2
HL_4V8X_0441/BA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_4V8X_0451/BA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_4V8X_0461/BA/271J:271MNo text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_4V8X_0471/BA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_4V8X_0481/BA/319:323No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_75407.1
HL_4V8X_0491/BA/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.8
HL_4V8X_0501/BA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_4V8X_0511/BA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4V8X_0521/BA/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_4V8X_0531/BA/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.1
HL_4V8X_0551/BA/566:575No text annotation
Not in a motif group
homologous
HL_7RQB_018
HL_89380.2
HL_4V8X_0561/BA/612:615No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_4V8X_0571/BA/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.1
HL_4V8X_0581/BA/641:647GNRA with one bulged base
Not in a motif group
homologous
HL_4WF9_021
HL_42097.1
HL_4V8X_0591/BA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4V8X_0601/BA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_4V8X_0611/BA/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_27930.1
HL_4V8X_0621/BA/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_4V8X_0631/BA/883:893No text annotation
Not in a motif group
HL_4V8X_0641/BA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_4V8X_0651/BA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_4V8X_0661/BA/1051:1108No text annotation
Not in a motif group
HL_4V8X_0671/BA/1171:1178No text annotation
Not in a motif group
HL_4V8X_0681/BA/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_4V8X_0691/BA/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_4V8X_0701/BA/1324:1330No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_4V8X_0711/BA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_4V8X_0721/BA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_4V8X_0731/BA/1450A:1461No text annotation
Not in a motif group
HL_4V8X_0741/BA/1491:1499No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_4V8X_0761/BA/1565:1568No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.2
HL_4V8X_0771/BA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V8X_0781/BA/1631:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_4V8X_0791/BA/1691:1696No text annotation
Not in a motif group
geometric
HL_7RQB_042
HL_03562.2
HL_4V8X_0801/BA/1719:1743No text annotation
Not in a motif group
HL_4V8X_0811/BA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4V8X_0821/BA/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_4V8X_0831/BA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_4V8X_0841/BA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_4V8X_0851/BA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V8X_0861/BA/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_4V8X_0871/BA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4V8X_0891/BA/2205:2219No text annotation
Not in a motif group
geometric
HL_5TBW_004
HL_98426.1
HL_4V8X_0901/BA/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_4V8X_0911/BA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_4V8X_0921/BA/2303:2313No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_4V8X_0931/BA/2324:2331No text annotation
Not in a motif group
homologous
HL_4WF9_052
HL_12078.2
HL_4V8X_0941/BA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_4V8X_0951/BA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_4V8X_0961/BA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_4V8X_0971/BA/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_4V8X_0981/BA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_4V8X_0991/BA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V8X_1001/BA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_4V8X_1011/BA/2658:2663No text annotation
Not in a motif group
geometric
HL_7RQB_064
HL_42097.1
HL_4V8X_1021/BA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_4V8X_1031/BA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_4V8X_1051/BA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_4V8X_1061/BA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_4V8X_1071/BB/38:44No text annotation
Not in a motif group
homologous
HL_7RQB_070
HL_87939.1
HL_4V8X_1081/BB/86:91No text annotation
Not in a motif group
homologous
HL_7RQB_071
HL_42097.1
HL_4V8X_1091/CA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4V8X_1101/CA/77:92No text annotation
Not in a motif group
HL_4V8X_1111/CA/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.1
HL_4V8X_1121/CA/189C:189HNo text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_10278.1
HL_4V8X_1131/CA/201:216No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_56691.2
HL_4V8X_1141/CA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4V8X_1151/CA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_4V8X_1161/CA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4V8X_1171/CA/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_4V8X_1181/CA/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_4V8X_1191/CA/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_4V8X_1201/CA/458:473No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4V8X_1211/CA/522:527No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_4V8X_1221/CA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_4V8X_1231/CA/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_4V8X_1241/CA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_4V8X_1251/CA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4V8X_1261/CA/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.1
HL_4V8X_1271/CA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_4V8X_1281/CA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_4V8X_1291/CA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V8X_1301/CA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_4V8X_1311/CA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_4V8X_1321/CA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V8X_1331/CA/1128:1143No text annotation
Not in a motif group
HL_4V8X_1341/CA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_4V8X_1351/CA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_4V8X_1361/CA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4V8X_1371/CA/1355:1367No text annotation
Not in a motif group
HL_4V8X_1381/CA/1445:1457UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_4V8X_1391/CA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V8X_1401/CV/13:22No text annotation
Not in a motif group
homologous
HL_6PMO_003
NA
HL_4V8X_1411/CV/31:39No text annotation
Not in a motif group
homologous
HL_6CFJ_107
NA
HL_4V8X_1421/CV/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4WT8_217
HL_22280.1
HL_4V8X_1431/CW/13:22No text annotation
Not in a motif group
HL_4V8X_1441/CW/29:41No text annotation
Not in a motif group
homologous
HL_6GSL_221
HL_06285.2
HL_4V8X_1451/CW/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4YCO_003
HL_22280.1
HL_4V8X_1461/DA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4V8X_1471/DA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_4V8X_1481/DA/123:128No text annotation
Not in a motif group
homologous
HL_7RQB_003
HL_75407.1
HL_4V8X_1491/DA/139:142ANo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_4V8X_1511/DA/194:201No text annotation
Not in a motif group
geometric
HL_5J7L_139
HL_06192.2
HL_4V8X_1521/DA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_4V8X_1531/DA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_4V8X_1541/DA/271J:271MNo text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_4V8X_1551/DA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_4V8X_1561/DA/319:323No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_75407.1
HL_4V8X_1571/DA/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.8
HL_4V8X_1581/DA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_4V8X_1591/DA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4V8X_1601/DA/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_4V8X_1611/DA/487:493GNRA
Not in a motif group
homologous
HL_4WF9_016
HL_42097.1
HL_4V8X_1631/DA/566:575No text annotation
Not in a motif group
geometric
HL_7RQB_018
HL_89380.2
HL_4V8X_1641/DA/612:615No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_4V8X_1651/DA/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.1
HL_4V8X_1661/DA/641:647GNRA with one bulged base
Not in a motif group
homologous
HL_4WF9_021
HL_42097.1
HL_4V8X_1671/DA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4V8X_1681/DA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_4V8X_1691/DA/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_27930.1
HL_4V8X_1701/DA/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_4V8X_1711/DA/883:893No text annotation
Not in a motif group
HL_4V8X_1721/DA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_4V8X_1731/DA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_4V8X_1741/DA/1051:1108No text annotation
Not in a motif group
HL_4V8X_1751/DA/1171:1178No text annotation
Not in a motif group
HL_4V8X_1761/DA/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_4V8X_1771/DA/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_4V8X_1781/DA/1324:1330No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_4V8X_1791/DA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_4V8X_1801/DA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_4V8X_1811/DA/1450A:1461No text annotation
Not in a motif group
HL_4V8X_1821/DA/1491:1499No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_4V8X_1841/DA/1565:1568No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.2
HL_4V8X_1851/DA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V8X_1861/DA/1631:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_4V8X_1871/DA/1691:1696No text annotation
Not in a motif group
geometric
HL_7RQB_042
HL_03562.2
HL_4V8X_1881/DA/1719:1743No text annotation
Not in a motif group
HL_4V8X_1891/DA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4V8X_1901/DA/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_4V8X_1911/DA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_4V8X_1921/DA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_4V8X_1931/DA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V8X_1941/DA/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_4V8X_1951/DA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4V8X_1971/DA/2205:2219No text annotation
Not in a motif group
geometric
HL_5TBW_004
HL_98426.1
HL_4V8X_1981/DA/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_4V8X_1991/DA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_4V8X_2001/DA/2303:2313No text annotation
Not in a motif group
homologous
HL_4WF9_051
NA
HL_4V8X_2011/DA/2324:2331No text annotation
Not in a motif group
homologous
HL_4WF9_052
HL_12078.2
HL_4V8X_2021/DA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_4V8X_2031/DA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_4V8X_2041/DA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_4V8X_2051/DA/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_4V8X_2061/DA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_4V8X_2071/DA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V8X_2081/DA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_4V8X_2091/DA/2658:2663No text annotation
Not in a motif group
geometric
HL_7RQB_064
HL_42097.1
HL_4V8X_2101/DA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_4V8X_2111/DA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_4V8X_2131/DA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_4V8X_2141/DA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_4V8X_2151/DB/38:44No text annotation
Not in a motif group
homologous
HL_7RQB_070
HL_87939.1
HL_4V8X_2161/DB/86:91No text annotation
Not in a motif group
homologous
HL_7RQB_071
HL_42097.1

Problematic loops

#loop idProblemSequence
HL_4V8X_042No text annotation
HL_4V8X_054No text annotation
HL_4V8X_075No text annotation
HL_4V8X_088No text annotation
HL_4V8X_104No text annotation
HL_4V8X_150No text annotation
HL_4V8X_162No text annotation
HL_4V8X_183No text annotation
HL_4V8X_196No text annotation
HL_4V8X_212No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V8X_0011/AA/30:32,
1/AA/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.2
IL_4V8X_0021/AA/44:45,
1/AA/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.2
IL_4V8X_0031/AA/47:52,
1/AA/359:361
No text annotation
Not in a motif group
homologous
IL_4LFB_003
IL_11178.1
IL_4V8X_0041/AA/54:56,
1/AA/356:357
Minor groove platform
Not in a motif group
homologous
IL_5J7L_004
IL_93353.1
IL_4V8X_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_6CZR_117
IL_76389.1
IL_4V8X_0061/AA/67:69,
1/AA/100:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_4V8X_0071/AA/129:131,
1/AA/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_4V8X_0081/AA/132:136,
1/AA/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_4V8X_0091/AA/148:153,
1/AA/168:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_4V8X_0101/AA/186:188,
1/AA/189L:191
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_95997.1
IL_4V8X_0111/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_4V8X_0121/AA/249:252,
1/AA/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_4V8X_0131/AA/292:293,
1/AA/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_4V8X_0141/AA/367:369,
1/AA/392:393
Single bulged U
Not in a motif group
homologous
IL_4LFB_014
IL_83039.13
IL_4V8X_0151/AA/370:375,
1/AA/389:391
No text annotation
Not in a motif group
IL_4V8X_0161/AA/375:376,
1/AA/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.2
IL_4V8X_0171/AA/409:416,
1/AA/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_4V8X_0181/AA/446:450,
1/AA/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4LFB_018
IL_88269.3
IL_4V8X_0191/AA/450:455,
1/AA/476:483
No text annotation
Not in a motif group
geometric
IL_4LFB_019
IL_11882.1
IL_4V8X_0201/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_4V8X_0211/AA/515:521,
1/AA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V8X_0221/AA/569:575,
1/AA/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_4V8X_0231/AA/580:584,
1/AA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_4V8X_0241/AA/594:596,
1/AA/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.1
IL_4V8X_0251/AA/597:598,
1/AA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_4V8X_0261/AA/605:612,
1/AA/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_4V8X_0271/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_4V8X_0281/AA/657:658,
1/AA/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.1
IL_4V8X_0291/AA/662:666,
1/AA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_4V8X_0301/AA/673:678,
1/AA/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_4V8X_0311/AA/683:688,
1/AA/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_4V8X_0321/AA/774:778,
1/AA/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_4V8X_0331/AA/779:783,
1/AA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_4V8X_0341/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4V8X_0351/AA/921:923,
1/AA/1393:1396
No text annotation
Not in a motif group
geometric
IL_4WF9_018
IL_51629.2
IL_4V8X_0361/AA/925:927,
1/AA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_4V8X_0371/AA/933:935,
1/AA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_4V8X_0381/AA/952:954,
1/AA/1226:1229
No text annotation
Not in a motif group
geometric
IL_4KYY_002
IL_51629.2
IL_4V8X_0391/AA/1010:1012,
1/AA/1017:1019
No text annotation
Not in a motif group
geometric
IL_5TBW_103
IL_95997.1
IL_4V8X_0401/AA/1048:1050,
1/AA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.13
IL_4V8X_0411/AA/1052:1057,
1/AA/1203:1206
No text annotation
Not in a motif group
IL_4V8X_0421/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
Not in a motif group
geometric
IL_5J7L_048
IL_93353.1
IL_4V8X_0431/AA/1060:1061,
1/AA/1195:1197
Single bulged U
Not in a motif group
geometric
IL_6CZR_156
IL_83039.13
IL_4V8X_0441/AA/1061:1063,
1/AA/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_95997.1
IL_4V8X_0461/AA/1124:1128,
1/AA/1143:1149
No text annotation
Not in a motif group
geometric
IL_4LFB_048
IL_85222.1
IL_4V8X_0471/AA/1247:1253,
1/AA/1284:1290
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_4V8X_0481/AA/1254:1259,
1/AA/1276:1283
No text annotation
Not in a motif group
IL_4V8X_0491/AA/1259:1262,
1/AA/1273:1276
Double sheared
Not in a motif group
geometric
IL_5J7L_256
IL_09705.9
IL_4V8X_0511/AA/1303:1308,
1/AA/1329:1334
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_4V8X_0521/AA/1350:1352,
1/AA/1370:1372
No text annotation
Not in a motif group
geometric
IL_1YZ9_002
IL_95997.1
IL_4V8X_0531/AA/1399:1401,
1/AA/1501:1504
No text annotation
Not in a motif group
homologous
IL_4LFB_056
NA
IL_4V8X_0541/AA/1401:1404,
1/AA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4V8X_0551/AA/1405:1407,
1/AA/1494:1496
No text annotation
Not in a motif group
geometric
IL_4V88_465
IL_95997.1
IL_4V8X_0561/AA/1407:1409,
1/AA/1491:1494
Not an internal loop
Not in a motif group
geometric
IL_5VCI_005
IL_82842.2
IL_4V8X_0571/AA/1412:1414,
1/AA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_4V8X_0581/AA/1416:1419,
1/AA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_4V8X_0591/AA/1431:1435,
1/AA/1466:1469
UAA/GAN variation
Not in a motif group
geometric
IL_4LFB_062
IL_07235.1
IL_4V8X_0601/AA/1435:1437,
1/AA/1464:1466
No text annotation
Not in a motif group
homologous
IL_4LFB_063
IL_95997.1
IL_4V8X_0611/AA/1440:1443,
1/AA/1459:1461
No text annotation
Not in a motif group
homologous
IL_4LFB_064
IL_92788.2
IL_4V8X_0621/AV/50:52,
1/AV/62:64
No text annotation
Not in a motif group
homologous
IL_4V9K_064
IL_95997.1
IL_4V8X_0631/AW/49:53,
1/AW/61:65
No text annotation
Not in a motif group
geometric
IL_5BTM_001
IL_05145.2
IL_4V8X_0641/BA/24:30,
1/BA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_7RQB_001
IL_66414.6
IL_4V8X_0651/BA/36:37,
1/BA/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.2
IL_4V8X_0661/BA/42:43,
1/BA/434:436
Minor groove platform
Not in a motif group
homologous
IL_7RQB_003
IL_42622.2
IL_4V8X_0671/BA/81:85,
1/BA/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_4V8X_0681/BA/183:184,
1/BA/212:214
Single stack bend
Not in a motif group
homologous
IL_7RQB_005
IL_76488.2
IL_4V8X_0691/BA/188:194,
1/BA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_006
IL_04346.7
IL_4V8X_0701/BA/239:245,
1/BA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_4V8X_0711/BA/271I:271J,
1/BA/271M:271O
Single bulged U
Not in a motif group
homologous
IL_7RQB_008
IL_83039.13
IL_4V8X_0721/BA/272D:272E,
1/BA/363E:364
Major groove platform
Not in a motif group
homologous
IL_7RQB_009
IL_27635.1
IL_4V8X_0741/BA/280:284,
1/BA/357:360
tSH-tHW
Not in a motif group
homologous
IL_7RQB_011
IL_04059.1
IL_4V8X_0751/BA/288:290,
1/BA/350:353
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_012
IL_38958.7
IL_4V8X_0761/BA/293:295,
1/BA/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_4V8X_0771/BA/481:484,
1/BA/496:509
No text annotation
Not in a motif group
homologous
IL_7RQB_014
IL_60992.6
IL_4V8X_0781/BA/564:566,
1/BA/575:577
No text annotation
Not in a motif group
geometric
IL_7RQB_015
IL_95997.1
IL_4V8X_0791/BA/606:610,
1/BA/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_4WF9_019
IL_17136.1
IL_4V8X_0801/BA/672:674,
1/BA/806:808
No text annotation
Not in a motif group
homologous
IL_7RQB_017
IL_95997.1
IL_4V8X_0811/BA/674:678,
1/BA/799:806
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_4WF9_021
IL_17470.6
IL_4V8X_0821/BA/697:698,
1/BA/763:765
Single bulged A
Not in a motif group
geometric
IL_7RQB_019
IL_37497.2