6FRK Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6FRK_001 | 1/1/10:17 | No text annotation Not in a motif group | geometric HL_1E8O_001 HL_93727.5 | |
| HL_6FRK_002 | 1/1/31:40 | No text annotation Not in a motif group | geometric HL_1E8O_002 HL_26501.1 | |
| HL_6FRK_003 | 1/1/146:151 | Other HL Not in a motif group | homologous HL_1MFQ_001 HL_43074.18 | |
| HL_6FRK_004 | 1/1/197:202 | GNRA Not in a motif group | homologous HL_1L9A_002 HL_43074.18 | |
| HL_6FRK_005 | 1/2/12:23 | No text annotation Not in a motif group | homologous HL_1F7U_001 NA | |
| HL_6FRK_006 | 1/2/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_97724.2 | |
| HL_6FRK_007 | 1/2/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_2DU3_003 HL_33239.17 | |
| HL_6FRK_008 | 1/5/37:44 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_23481.5 | |
| HL_6FRK_009 | 1/5/68:73 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_96776.3 | |
| HL_6FRK_010 | 1/5/89:95 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.5 | |
| HL_6FRK_011 | 1/5/131:137 | No text annotation Not in a motif group | ||
| HL_6FRK_012 | 1/5/204:211 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_68493.6 | |
| HL_6FRK_013 | 1/5/222:226 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98557.5 | |
| HL_6FRK_014 | 1/5/230:238 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.6 | |
| HL_6FRK_015 | 1/5/289:298 | No text annotation Not in a motif group | ||
| HL_6FRK_016 | 1/5/314:323 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_46142.8 | |
| HL_6FRK_017 | 1/5/368:373 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_43074.18 | |
| HL_6FRK_018 | 1/5/393:398 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_43074.18 | |
| HL_6FRK_019 | 1/5/1178:1183 | GNRA Not in a motif group | geometric HL_4FRG_002 HL_43074.18 | |
| HL_6FRK_020 | 1/5/1252:1258 | No text annotation Not in a motif group | geometric HL_4LFB_012 HL_68304.6 | |
| HL_6FRK_021 | 1/5/1317:1326 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_33239.17 | |
| HL_6FRK_022 | 1/5/1363:1374 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_18218.2 | |
| HL_6FRK_023 | 1/5/1389:1394 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_43074.18 | |
| HL_6FRK_024 | 1/5/1406:1411 | No text annotation Not in a motif group | ||
| HL_6FRK_025 | 1/5/1436:1448 | No text annotation Not in a motif group | ||
| HL_6FRK_026 | 1/5/1479:1486 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_40469.1 | |
| HL_6FRK_027 | 1/5/1561:1566 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_43074.18 | |
| HL_6FRK_028 | 1/5/1593:1602 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.5 | |
| HL_6FRK_029 | 1/5/1627:1635 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_05832.1 | |
| HL_6FRK_030 | 1/5/1675:1680 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_15942.5 | |
| HL_6FRK_031 | 1/5/1763:1769 | GNRA Not in a motif group | homologous HL_5TBW_023 HL_43074.18 | |
| HL_6FRK_032 | 1/5/1814:1823 | No text annotation Not in a motif group | ||
| HL_6FRK_033 | 1/5/1864:1870 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_43074.18 | |
| HL_6FRK_034 | 1/5/1886:1893 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_72451.5 | |
| HL_6FRK_035 | 1/5/1978:1988 | No text annotation Not in a motif group | homologous HL_5TBW_027 HL_92304.3 | |
| HL_6FRK_036 | 1/5/2006:2013 | No text annotation Not in a motif group | geometric HL_4WRT_001 HL_35894.3 | |
| HL_6FRK_037 | 1/5/2130:2244 | No text annotation Not in a motif group | ||
| HL_6FRK_038 | 1/5/2317:2322 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_43074.18 | |
| HL_6FRK_039 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_33239.17 | |
| HL_6FRK_040 | 1/5/2420:2426 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_86880.5 | |
| HL_6FRK_041 | 1/5/2458:2463 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_43074.18 | |
| HL_6FRK_042 | 1/5/2487:2491 | No text annotation Not in a motif group | geometric HL_5TBW_044 HL_05667.1 | |
| HL_6FRK_043 | 1/5/2523:2532 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_78457.4 | |
| HL_6FRK_044 | 1/5/2561:2566 | GNRA Not in a motif group | geometric HL_5J7L_147 HL_43074.18 | |
| HL_6FRK_045 | 1/5/2578:2583 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_43074.18 | |
| HL_6FRK_046 | 1/5/2624:2632 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_73793.2 | |
| HL_6FRK_047 | 1/5/2664:2670 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_00923.1 | |
| HL_6FRK_048 | 1/5/2705:2710 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_6FRK_049 | 1/5/2738:2742 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_69353.7 | |
| HL_6FRK_050 | 1/5/2792:2799 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_66171.3 | |
| HL_6FRK_051 | 1/5/2810:2816 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_02361.6 | |
| HL_6FRK_052 | 1/5/2872:2877 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_79299.11 | |
| HL_6FRK_053 | 1/5/3614:3618 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_99223.1 | |
| HL_6FRK_054 | 1/5/3639:3649 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.4 | |
| HL_6FRK_055 | 1/5/3668:3674 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_43074.18 | |
| HL_6FRK_056 | 1/5/3724:3729 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_43074.18 | |
| HL_6FRK_057 | 1/5/3757:3767 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_98248.1 | |
| HL_6FRK_058 | 1/5/3796:3804 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_53760.4 | |
| HL_6FRK_059 | 1/5/3873:3882 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.5 | |
| HL_6FRK_060 | 1/5/3948:4065 | No text annotation Not in a motif group | ||
| HL_6FRK_061 | 1/5/4102:4107 | UNCG Not in a motif group | geometric HL_4PDB_001 HL_79299.11 | |
| HL_6FRK_062 | 1/5/4139:4145 | No text annotation Not in a motif group | ||
| HL_6FRK_063 | 1/5/4193:4201 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_46891.3 | |
| HL_6FRK_064 | 1/5/4210:4222 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.5 | |
| HL_6FRK_065 | 1/5/4250:4258 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.3 | |
| HL_6FRK_066 | 1/5/4270:4277 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_46142.8 | |
| HL_6FRK_067 | 1/5/4301:4309 | No text annotation Not in a motif group | homologous HL_5TBW_058 HL_14725.1 | |
| HL_6FRK_068 | 1/5/4321:4326 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_43074.18 | |
| HL_6FRK_069 | 1/5/4352:4362 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_18218.2 | |
| HL_6FRK_070 | 1/5/4417:4425 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_36421.5 | |
| HL_6FRK_071 | 1/5/4474:4481 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_92681.5 | |
| HL_6FRK_072 | 1/5/4497:4503 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_26055.6 | |
| HL_6FRK_073 | 1/5/4540:4545 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_43074.18 | |
| HL_6FRK_074 | 1/5/4603:4608 | GNRA Not in a motif group | geometric HL_4AOB_003 HL_43074.18 | |
| HL_6FRK_075 | 1/5/4646:4651 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_67719.1 | |
| HL_6FRK_076 | 1/5/4688:4702 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.5 | |
| HL_6FRK_077 | 1/5/4907:4914 | No text annotation Not in a motif group | ||
| HL_6FRK_078 | 1/5/4975:4983 | No text annotation Not in a motif group | geometric HL_5J7L_201 HL_05018.6 | |
| HL_6FRK_079 | 1/5/5021:5028 | No text annotation Not in a motif group | ||
| HL_6FRK_080 | 1/7/36:41 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_58912.1 | |
| HL_6FRK_081 | 1/7/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_43074.18 | |
| HL_6FRK_082 | 1/8/47:56 | No text annotation Not in a motif group | geometric HL_4V9F_001 HL_55136.1 | |
| HL_6FRK_084 | 1/8/107:112 | No text annotation Not in a motif group | ||
| HL_6FRK_085 | 1/8/121:129 | Other HL Not in a motif group | geometric HL_5J7L_167 HL_43074.18 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6FRK_083 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6FRK_001 | 1/1/52:54, 1/1/292:294 | Isolated cWH basepair Not in a motif group | geometric IL_406D_002 IL_42589.6 | |
| IL_6FRK_002 | 1/1/55:60, 1/1/287:291 | No text annotation Not in a motif group | ||
| IL_6FRK_003 | 1/1/91:93, 1/1/257:258 | Not an internal loop Not in a motif group | geometric IL_4LFB_053 IL_31836.1 | |
| IL_6FRK_004 | 1/1/112:114, 1/1/237:238 | Single bulged G Not in a motif group | geometric IL_5TBW_037 IL_59137.10 | |
| IL_6FRK_005 | 1/1/117:123, 1/1/227:234 | No text annotation Not in a motif group | ||
| IL_6FRK_006 | 1/1/132:134, 1/1/163:165 | No text annotation Not in a motif group | homologous IL_1MFQ_003 IL_01312.13 | |
| IL_6FRK_007 | 1/1/138:141, 1/1/156:159 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_1MFQ_004 IL_85877.10 | |
| IL_6FRK_008 | 1/1/175:177, 1/1/220:221 | Single bulged A Not in a motif group | geometric IL_6D3P_004 IL_80007.16 | |
| IL_6FRK_009 | 1/1/181:187, 1/1/212:216 | No text annotation Not in a motif group | ||
| IL_6FRK_010 | 1/1/190:195, 1/1/204:209 | tSH-tHW-tHS-cWW Not in a motif group | homologous IL_1MFQ_007 IL_76308.3 | |
| IL_6FRK_011 | 1/5/6:7, 1/8/149:151 | Single bulged C Not in a motif group | homologous IL_5TBW_002 IL_61258.10 | |
| IL_6FRK_012 | 1/5/12:14, 1/8/143:144 | Single bulged U Not in a motif group | homologous IL_5TBW_003 IL_83039.11 | |
| IL_6FRK_013 | 1/5/16:18, 1/8/139:141 | Isolated cWH basepair Not in a motif group | geometric IL_4J50_003 IL_01312.13 | |
| IL_6FRK_014 | 1/5/26:27, 1/5/55:57 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_04038.4 | |
| IL_6FRK_015 | 1/5/30:37, 1/5/44:52 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_61812.1 | |
| IL_6FRK_016 | 1/5/81:88, 1/5/96:102 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_29509.1 | |
| IL_6FRK_017 | 1/5/118:121, 1/5/152:153 | Multiple bulged bases Not in a motif group | geometric IL_1FUF_002 IL_13730.12 | |
| IL_6FRK_018 | 1/5/121:122, 1/5/147:152 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.1 | |
| IL_6FRK_019 | 1/5/125:127, 1/5/141:144 | No text annotation Not in a motif group | homologous IL_5TBW_008 IL_01312.13 | |
| IL_6FRK_020 | 1/5/160:161, 1/5/274:276 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_04038.4 | |
| IL_6FRK_021 | 1/5/168:173, 1/5/263:267 | No text annotation Not in a motif group | ||
| IL_6FRK_022 | 1/5/180:182, 1/5/255:256 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_04038.4 | |
| IL_6FRK_023 | 1/5/184:189, 1/5/252:253 | No text annotation Not in a motif group | ||
| IL_6FRK_024 | 1/5/195:196, 1/5/244:246 | Single bulged C Not in a motif group | geometric IL_1S03_006 IL_61258.10 | |
| IL_6FRK_025 | 1/5/199:201, 1/5/214:215 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.11 | |
| IL_6FRK_026 | 1/5/339:342, 1/8/32:33 | Minor groove platform Not in a motif group | geometric IL_7RQB_073 IL_06437.11 | |
| IL_6FRK_027 | 1/5/348:350, 1/8/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_80007.16 | |
| IL_6FRK_028 | 1/5/387:390, 1/5/401:414 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.5 | |
| IL_6FRK_029 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.5 | |
| IL_6FRK_030 | 1/5/443:446, 1/5/1300:1304 | No text annotation Not in a motif group | ||
| IL_6FRK_031 | 1/5/459:460, 1/5/695:697 | Single bulged C Not in a motif group | geometric IL_1KUQ_002 IL_61258.10 | |
| IL_6FRK_032 | 1/5/462:464, 1/5/691:693 | No text annotation Not in a motif group | geometric IL_5UNE_003 IL_01312.13 | |
| IL_6FRK_033 | 1/5/466:472, 1/5/682:689 | No text annotation Not in a motif group | ||
| IL_6FRK_034 | 1/5/482:486, 1/5/670:672 | No text annotation Not in a motif group | ||
| IL_6FRK_035 | 1/5/488:490, 1/5/664:668 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_411 IL_87332.1 | |
| IL_6FRK_036 | 1/5/490:493, 1/5/661:664 | No text annotation Not in a motif group | ||
| IL_6FRK_037 | 1/5/495:496, 1/5/657:659 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_04038.4 | |
| IL_6FRK_038 | 1/5/497:499, 1/5/655:656 | No text annotation Not in a motif group | ||
| IL_6FRK_039 | 1/5/500:505, 1/5/653:654 | Single stack bend Not in a motif group | geometric IL_4V9F_005 IL_04038.4 | |
| IL_6FRK_040 | 1/5/508:510, 1/5/649:650 | Single bulged A Not in a motif group | geometric IL_7A0S_012 IL_80007.16 | |
| IL_6FRK_041 | 1/5/511:515, 1/5/646:648 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_01312.13 | |
| IL_6FRK_042 | 1/5/708:709, 1/5/1287:1289 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_59137.10 | |
| IL_6FRK_043 | 1/5/722:724, 1/5/942:946 | No text annotation Not in a motif group | ||
| IL_6FRK_044 | 1/5/726:731, 1/5/938:940 | No text annotation Not in a motif group | ||
| IL_6FRK_045 | 1/5/731:735, 1/5/928:938 | No text annotation Not in a motif group | ||
| IL_6FRK_046 | 1/5/736:738, 1/5/926:927 | Single base bend Not in a motif group | geometric IL_5IBB_340 IL_83121.7 | |
| IL_6FRK_047 | 1/5/740:742, 1/5/922:924 | No text annotation Not in a motif group | geometric IL_4P43_004 IL_01312.13 | |
| IL_6FRK_048 | 1/5/745:750, 1/5/912:919 | No text annotation Not in a motif group | ||
| IL_6FRK_049 | 1/5/750:753, 1/5/910:912 | No text annotation Not in a motif group | geometric IL_4V84_070 IL_34626.4 | |
| IL_6FRK_050 | 1/5/989:992, 1/5/1051:1064 | No text annotation Not in a motif group | ||
| IL_6FRK_051 | 1/5/1074:1077, 1/5/1234:1236 | No text annotation Not in a motif group | geometric IL_4V84_070 IL_34626.4 | |
| IL_6FRK_052 | 1/5/1077:1079, 1/5/1221:1234 | No text annotation Not in a motif group | ||
| IL_6FRK_053 | 1/5/1081:1082, 1/5/1217:1219 | No text annotation Not in a motif group | ||
| IL_6FRK_054 | 1/5/1082:1085, 1/5/1212:1217 | No text annotation Not in a motif group | ||
| IL_6FRK_055 | 1/5/1086:1087, 1/5/1209:1211 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.10 | |
| IL_6FRK_056 | 1/5/1097:1098, 1/5/1197:1199 | Single stack bend Not in a motif group | geometric IL_5J7L_249 IL_04038.4 | |
| IL_6FRK_057 | 1/5/1173:1175, 1/5/1186:1188 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_01312.13 | |
| IL_6FRK_058 | 1/5/1357:1361, 1/5/1376:1382 | No text annotation Not in a motif group | ||
| IL_6FRK_059 | 1/5/1425:1429, 1/5/1455:1460 | No text annotation Not in a motif group | ||
| IL_6FRK_060 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared Not in a motif group | geometric IL_1SAQ_002 IL_09705.7 | |
| IL_6FRK_061 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_80007.16 | |
| IL_6FRK_062 | 1/5/1474:1476, 1/5/1489:1490 | Single base bend Not in a motif group | geometric IL_5IBB_340 IL_83121.7 | |
| IL_6FRK_063 | 1/5/1520:1522, 1/5/1655:1657 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_01312.13 | |
| IL_6FRK_064 | 1/5/1522:1526, 1/5/1648:1655 | No text annotation Not in a motif group | homologous IL_5TBW_028 IL_17470.5 | |
| IL_6FRK_065 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G Not in a motif group | homologous IL_5TBW_029 IL_99645.1 | |
| IL_6FRK_066 | 1/5/1551:1555, 1/5/1572:1576 | Triple sheared Not in a motif group | geometric IL_4V9F_027 IL_56467.6 | |
| IL_6FRK_067 | 1/5/1586:1589, 1/5/1605:1607 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_95485.6 | |
| IL_6FRK_068 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U Not in a motif group | homologous IL_5TBW_032 IL_83039.11 | |
| IL_6FRK_069 | 1/5/1624:1626, 1/5/1636:1640 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_033 IL_90991.5 | |
| IL_6FRK_070 | 1/5/1671:1673, 1/5/1682:1684 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_01312.13 | |
| IL_6FRK_071 | 1/5/1686:1688, 1/5/1848:1851 | No text annotation Not in a motif group | ||
| IL_6FRK_072 | 1/5/1694:1725, 1/5/1837:1842 | No text annotation Not in a motif group | ||
| IL_6FRK_073 | 1/5/1732:1737, 1/5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_89193.1 | |
| IL_6FRK_074 | 1/5/1737:1738, 1/5/1790:1792 | Minor groove platform Not in a motif group | homologous IL_5TBW_039 IL_06437.11 | |
| IL_6FRK_075 | 1/5/1739:1744, 1/5/1786:1789 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_63596.4 | |
| IL_6FRK_076 | 1/5/1746:1749, 1/5/1781:1784 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_85877.10 | |
| IL_6FRK_077 | 1/5/1749:1751, 1/5/1779:1781 | No text annotation Not in a motif group | homologous IL_5TBW_042 IL_01312.13 | |
| IL_6FRK_078 | 1/5/1752:1757, 1/5/1775:1778 | No text annotation Not in a motif group | ||
| IL_6FRK_079 | 1/5/1759:1763, 1/5/1769:1773 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05867.1 | |
| IL_6FRK_080 | 1/5/1858:1860, 1/5/1874:1876 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_01312.13 | |
| IL_6FRK_081 | 1/5/1861:1863, 1/5/1871:1873 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_047 IL_67621.5 | |
| IL_6FRK_082 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_53523.5 | |
| IL_6FRK_083 | 1/5/1911:1918, 1/5/2064:2065 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V9F_038 IL_15861.6 | |
| IL_6FRK_084 | 1/5/1918:1920, 1/5/2063:2064 | No text annotation Not in a motif group | ||
| IL_6FRK_085 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation Not in a motif group | ||
| IL_6FRK_086 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation Not in a motif group | homologous IL_5TBW_051 IL_17971.1 | |
| IL_6FRK_087 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_94878.1 | |
| IL_6FRK_088 | 1/5/1945:1948, 1/5/2035:2037 | Intercalated cWW Not in a motif group | geometric IL_7A0S_044 IL_04038.4 | |
| IL_6FRK_089 | 1/5/1957:1965, 1/5/2022:2026 | Kink-turn Not in a motif group | geometric IL_4V9F_042 IL_90538.3 | |
| IL_6FRK_090 | 1/5/1973:1977, 1/5/1989:1993 | No text annotation Not in a motif group | homologous IL_5TBW_291 NA | |
| IL_6FRK_091 | 1/5/2001:2005, 1/5/2014:2016 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_056 IL_95485.6 | |
| IL_6FRK_092 | 1/5/2083:2085, 1/5/2272:2273 | Single bulged C Not in a motif group | geometric IL_3W3S_001 IL_61258.10 | |
| IL_6FRK_093 | 1/5/2290:2292, 1/5/2342:2345 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_01312.13 | |
| IL_6FRK_094 | 1/5/2299:2301, 1/5/2334:2335 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_80007.16 | |
| IL_6FRK_095 | 1/5/2302:2309, 1/5/2329:2333 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_29549.9 | |
| IL_6FRK_096 | 1/5/2312:2314, 1/5/2325:2326 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_80007.16 | |
| IL_6FRK_097 | 1/5/2358:2364, 1/5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_35110.5 | |
| IL_6FRK_098 | 1/5/2415:2419, 1/5/2427:2429 | C-loop Not in a motif group | geometric IL_7A0S_047 IL_63596.4 | |
| IL_6FRK_099 | 1/5/2446:2450, 1/5/2509:2514 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_53523.5 | |
| IL_6FRK_100 | 1/5/2477:2479, 1/5/2499:2500 | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_31836.1 | |
| IL_6FRK_101 | 1/5/2542:2547, 1/5/2772:2774 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_55456.1 | |
| IL_6FRK_102 | 1/5/2589:2593, 1/5/2752:2756 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.6 | |
| IL_6FRK_103 | 1/5/2613:2614, 1/5/2724:2726 | Single bulged A Not in a motif group | geometric IL_3MJA_001 IL_80007.16 | |
| IL_6FRK_104 | 1/5/2614:2615, 1/5/2722:2724 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_72766.2 | |
| IL_6FRK_105 | 1/5/2646:2648, 1/5/2685:2688 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.6 | |
| IL_6FRK_106 | 1/5/2651:2653, 1/5/2681:2682 | No text annotation Not in a motif group | ||
| IL_6FRK_107 | 1/5/2656:2662, 1/5/2672:2678 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_76900.1 | |
| IL_6FRK_108 | 1/5/2704:2705, 1/5/2710:2712 | No text annotation Not in a motif group | ||
| IL_6FRK_109 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_79393.8 | |
| IL_6FRK_110 | 1/5/2844:2846, 1/5/3842:3844 | Isolated tWW turn Not in a motif group | homologous IL_5TBW_075 IL_54997.5 | |
| IL_6FRK_111 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5TBW_076 IL_80663.10 | |
| IL_6FRK_112 | 1/5/2850:2855, 1/5/3837:3840 | Intercalated tWH Not in a motif group | geometric IL_5J7L_307 IL_01312.13 | |
| IL_6FRK_113 | 1/5/2867:2872, 1/5/2877:2883 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_5TBW_078 IL_66584.5 | |
| IL_6FRK_114 | 1/5/2889:2891, 1/5/3610:3612 | No text annotation Not in a motif group | homologous IL_5TBW_079 IL_01312.13 | |
| IL_6FRK_115 | 1/5/2896:2897, 1/5/3602:3605 | No text annotation Not in a motif group | homologous IL_5TBW_080 IL_76195.1 | |
| IL_6FRK_116 | 1/5/2901:2905, 1/5/3589:3598 | No text annotation Not in a motif group | ||
| IL_6FRK_117 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_80007.16 | |
| IL_6FRK_118 | 1/5/3660:3665, 1/5/3677:3684 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_95993.1 | |
| IL_6FRK_119 | 1/5/3700:3703, 1/5/3749:3750 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_72766.2 | |
| IL_6FRK_120 | 1/5/3704:3705, 1/5/3745:3748 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_085 IL_13730.12 | |
| IL_6FRK_121 | 1/5/3708:3714, 1/5/3739:3742 | No text annotation Not in a motif group | ||
| IL_6FRK_122 | 1/5/3714:3721, 1/5/3732:3739 | No text annotation Not in a motif group | ||
| IL_6FRK_123 | 1/5/3780:3781, 1/5/3811:3814 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_69632.1 | |
| IL_6FRK_124 | 1/5/3781:3792, 1/5/3808:3811 | No text annotation Not in a motif group | homologous IL_5TBW_090 IL_45481.1 | |
| IL_6FRK_125 | 1/5/3895:3898, 1/5/4563:4565 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_87630.5 | |
| IL_6FRK_126 | 1/5/3900:3902, 1/5/4558:4561 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_86964.1 | |
| IL_6FRK_127 | 1/5/3913:3915, 1/5/4388:4389 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.11 | |
| IL_6FRK_128 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_06437.11 | |
| IL_6FRK_129 | 1/5/3927:3929, 1/5/4181:4184 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.6 | |
| IL_6FRK_130 | 1/5/4082:4088, 1/5/4161:4164 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_98353.1 | |
| IL_6FRK_131 | 1/5/4094:4097, 1/5/4112:4114 | No text annotation Not in a motif group | ||
| IL_6FRK_132 | 1/5/4191:4192, 1/5/4202:4204 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_80007.16 | |
| IL_6FRK_133 | 1/5/4243:4245, 1/5/4263:4267 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5TBW_099 IL_38958.6 | |
| IL_6FRK_134 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_80007.16 | |
| IL_6FRK_135 | 1/5/4295:4298, 1/5/4312:4315 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_85877.10 | |
| IL_6FRK_136 | 1/5/4347:4350, 1/5/4364:4365 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_04038.4 | |
| IL_6FRK_137 | 1/5/4400:4401, 1/5/4442:4444 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_80663.10 | |
| IL_6FRK_138 | 1/5/4401:4403, 1/5/4440:4442 | No text annotation Not in a motif group | homologous IL_5TBW_103 IL_05265.1 | |
| IL_6FRK_139 | 1/5/4403:4405, 1/5/4439:4440 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_80663.10 | |
| IL_6FRK_140 | 1/5/4405:4407, 1/5/4435:4439 | No text annotation Not in a motif group | homologous IL_5TBW_105 IL_07931.5 | |
| IL_6FRK_141 | 1/5/4412:4416, 1/5/4426:4430 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.6 | |
| IL_6FRK_142 | 1/5/4453:4454, 1/5/4526:4528 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_80663.10 | |
| IL_6FRK_143 | 1/5/4456:4458, 1/5/4520:4524 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_108 IL_01312.13 | |
| IL_6FRK_144 | 1/5/4458:4459, 1/5/4517:4520 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_13730.12 | |
| IL_6FRK_145 | 1/5/4466:4468, 1/5/4489:4491 | No text annotation Not in a motif group | geometric IL_4KR9_001 IL_01312.13 | |
| IL_6FRK_146 | 1/5/4468:4470, 1/5/4485:4489 | No text annotation Not in a motif group | ||
| IL_6FRK_147 | 1/5/4495:4497, 1/5/4503:4505 | No text annotation Not in a motif group | homologous IL_5TBW_112 IL_01312.13 | |
| IL_6FRK_148 | 1/5/4537:4538, 1/5/4547:4549 | Single bulged A Not in a motif group | geometric IL_2VPL_002 IL_80007.16 | |
| IL_6FRK_149 | 1/5/4580:4582, 1/5/4721:4723 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_01312.13 | |
| IL_6FRK_150 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.7 | |
| IL_6FRK_151 | 1/5/4590:4592, 1/5/4618:4620 | No text annotation Not in a motif group | homologous IL_5TBW_115 IL_01312.13 | |
| IL_6FRK_152 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_116 IL_04346.5 | |
| IL_6FRK_153 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation Not in a motif group | ||
| IL_6FRK_154 | 1/5/4632:4637, 1/5/4662:4666 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_53523.5 | |
| IL_6FRK_155 | 1/5/4638:4640, 1/5/4659:4661 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_018 IL_42589.6 | |
| IL_6FRK_156 | 1/5/4641:4642, 1/5/4655:4658 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_13730.12 | |
| IL_6FRK_157 | 1/5/4680:4685, 1/5/4705:4710 | UAA/GAN with extra cWW Not in a motif group | geometric IL_7RQB_107 IL_49767.4 | |
| IL_6FRK_158 | 1/5/4739:4746, 1/5/4954:4960 | No text annotation Not in a motif group | ||
| IL_6FRK_159 | 1/5/4755:4766, 1/5/4868:4878 | No text annotation Not in a motif group | ||
| IL_6FRK_160 | 1/5/4768:4772, 1/5/4863:4866 | No text annotation Not in a motif group | ||
| IL_6FRK_161 | 1/5/4885:4888, 1/5/4931:4934 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_110 IL_85877.10 | |
| IL_6FRK_162 | 1/5/4891:4896, 1/5/4924:4928 | No text annotation Not in a motif group | ||
| IL_6FRK_163 | 1/5/4899:4901, 1/5/4920:4921 | No text annotation Not in a motif group | ||
| IL_6FRK_164 | 1/5/4972:4975, 1/5/4983:4986 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_129 IL_85877.10 | |
| IL_6FRK_165 | 1/5/4996:4997, 1/5/5053:5055 | No text annotation Not in a motif group | ||
| IL_6FRK_166 | 1/5/5000:5002, 1/5/5045:5050 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_55456.1 | |
| IL_6FRK_167 | 1/5/5003:5009, 1/5/5039:5044 | No text annotation Not in a motif group | ||
| IL_6FRK_168 | 1/5/5012:5014, 1/5/5035:5036 | Single bulged C Not in a motif group | geometric IL_4WF9_035 IL_61258.10 | |
| IL_6FRK_169 | 1/5/5014:5017, 1/5/5032:5035 | tWS-tSW Not in a motif group | homologous IL_5TBW_135 IL_09705.7 | |
| IL_6FRK_170 | 1/7/15:16, 1/7/62:64 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_80007.16 | |
| IL_6FRK_171 | 1/7/21:27, 1/7/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_05523.1 | |
| IL_6FRK_172 | 1/7/28:29, 1/7/48:51 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.4 | |
| IL_6FRK_173 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.5 | |
| IL_6FRK_174 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.5 | |
| IL_6FRK_175 | 1/7/79:81, 1/7/95:97 | No text annotation Not in a motif group | geometric IL_4V88_470 IL_01312.13 | |
| IL_6FRK_176 | 1/7/82:85, 1/7/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_01312.13 | |
| IL_6FRK_177 | 1/8/64:66, 1/8/92:95 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_55456.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6FRK_001 | 1/1/3:4, 1/1/23:28, 1/1/43:44 | No text annotation Not in a motif group | ||
| J3_6FRK_002 | 1/1/128:129, 1/1/168:175, 1/1/221:222 | No text annotation Not in a motif group | ||
| J3_6FRK_003 | 1/5/112:116, 1/5/155:160, 1/5/276:278 | No text annotation Not in a motif group | ||
| J3_6FRK_004 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation Not in a motif group | ||
| J3_6FRK_005 | 1/5/448:456, 1/5/700:704, 1/5/1293:1298 | No text annotation Not in a motif group | ||
| J3_6FRK_006 | 1/5/711:713, 1/5/955:976, 1/5/1278:1285 | No text annotation Not in a motif group | ||
| J3_6FRK_007 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation Not in a motif group | ||
| J3_6FRK_008 | 1/5/1545:1548, 1/5/1580:1584, 1/5/1609:1614 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_6FRK_009 | 1/5/1969:1971, 1/5/1995:2001, 1/5/2016:2018 | No text annotation Not in a motif group | ||
| J3_6FRK_010 | 1/5/2393:2399, 1/5/2805:2807, 1/5/2819:2822 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_6FRK_011 | 1/5/2402:2405, 1/5/2785:2791, 1/5/2800:2802 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_6FRK_012 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_6FRK_013 | 1/5/2549:2555, 1/5/2572:2575, 1/5/2757:2770 | No text annotation Not in a motif group | ||
| J3_6FRK_014 | 1/5/2575:2576, 1/5/2585:2589, 1/5/2756:2757 | No text annotation Not in a motif group | ||
| J3_6FRK_015 | 1/5/3937:3939, 1/5/4074:4078, 1/5/4168:4173 | No text annotation Not in a motif group | ||
| J3_6FRK_016 | 1/5/4091:4094, 1/5/4114:4129, 1/5/4155:4158 | No text annotation Not in a motif group | ||
| J3_6FRK_017 | 1/5/4228:4230, 1/5/4331:4342, 1/5/4370:4375 | No text annotation Not in a motif group | ||
| J3_6FRK_018 | 1/5/4241:4243, 1/5/4267:4269, 1/5/4278:4283 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_6FRK_019 | 1/5/4463:4466, 1/5/4491:4493, 1/5/4507:4513 | No text annotation Not in a motif group | ||
| J3_6FRK_020 | 1/5/4970:4972, 1/5/4986:4994, 1/5/5057:5063 | No text annotation Not in a motif group | ||
| J3_6FRK_021 | 1/7/9:14, 1/7/65:66, 1/7/109:110 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_6FRK_022 | 1/8/44:45, 1/8/58:64, 1/8/95:99 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: