Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6WNW_0011/3/12:22No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_6WNW_0021/3/78:91No text annotation
Not in a motif group
HL_6WNW_0031/3/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_6WNW_0041/3/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_6WNW_0051/3/206:213No text annotation
Not in a motif group
geometric
HL_2Y9H_005
HL_47100.1
HL_6WNW_0061/3/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_6WNW_0071/3/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_6WNW_0081/3/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_6WNW_0091/3/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_6WNW_0101/3/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_6WNW_0111/3/419:424No text annotation
Not in a motif group
geometric
HL_4V88_198
HL_56691.2
HL_6WNW_0121/3/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_6WNW_0131/3/522:527No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_6WNW_0141/3/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_6WNW_0151/3/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_6WNW_0161/3/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_6WNW_0171/3/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_6WNW_0181/3/840:846No text annotation
Not in a motif group
geometric
HL_5TBW_022
HL_94803.1
HL_6WNW_0191/3/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_42097.1
HL_6WNW_0201/3/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_6WNW_0211/3/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_6WNW_0221/3/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_6WNW_0231/3/1028:1033No text annotation
Not in a motif group
HL_6WNW_0241/3/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_6WNW_0251/3/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_6WNW_0261/3/1134:1140No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_6WNW_0271/3/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_6WNW_0281/3/1265:1270GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_42097.1
HL_6WNW_0291/3/1314:1323No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_89380.2
HL_6WNW_0301/3/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_6WNW_0311/3/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_6WNW_0321/3/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_6WNW_0331/4/59:68No text annotation
Not in a motif group
geometric
HL_4GXY_003
HL_96598.1
HL_6WNW_0341/4/87:95No text annotation
Not in a motif group
geometric
HL_5J7L_135
HL_84193.1
HL_6WNW_0351/4/123:128No text annotation
Not in a motif group
geometric
HL_7RQB_003
HL_75407.1
HL_6WNW_0361/4/136:143No text annotation
Not in a motif group
geometric
HL_5TBW_012
HL_86373.2
HL_6WNW_0371/4/158:168No text annotation
Not in a motif group
geometric
HL_5J7L_138
HL_81820.1
HL_6WNW_0381/4/194:201No text annotation
Not in a motif group
geometric
HL_5J7L_139
HL_06192.2
HL_6WNW_0391/4/225:230No text annotation
Not in a motif group
geometric
HL_5J7L_140
HL_27930.1
HL_6WNW_0401/4/246:252No text annotation
Not in a motif group
geometric
HL_5J7L_141
HL_67216.7
HL_6WNW_0411/4/305:312T-loop with 1 bulged base
Not in a motif group
geometric
HL_5J7L_142
HL_89380.2
HL_6WNW_0421/4/327:335No text annotation
Not in a motif group
geometric
HL_5J7L_144
HL_08002.8
HL_6WNW_0431/4/382:392No text annotation
Not in a motif group
geometric
HL_5J7L_145
HL_91503.4
HL_6WNW_0441/4/410:417No text annotation
Not in a motif group
geometric
HL_5J7L_146
HL_96598.1
HL_6WNW_0451/4/462:467GNRA
Not in a motif group
geometric
HL_5TBW_064
HL_42097.1
HL_6WNW_0461/4/487:493No text annotation
Not in a motif group
geometric
HL_5J7L_148
HL_42097.1
HL_6WNW_0471/4/544:549No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_6WNW_0481/4/566:575T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5J7L_150
HL_89380.2
HL_6WNW_0491/4/611:617No text annotation
Not in a motif group
geometric
HL_5J7L_151
HL_90617.2
HL_6WNW_0501/4/629:634GNRA
Not in a motif group
geometric
HL_5J7L_152
HL_42097.1
HL_6WNW_0511/4/641:647No text annotation
Not in a motif group
geometric
HL_5J7L_153
HL_77805.2
HL_6WNW_0521/4/712:719No text annotation
Not in a motif group
geometric
HL_5J7L_154
HL_84085.2
HL_6WNW_0531/4/744:753No text annotation
Not in a motif group
geometric
HL_4WF9_023
HL_39334.6
HL_6WNW_0541/4/779:785No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_6WNW_0551/4/826:831No text annotation
Not in a motif group
geometric
HL_7RQB_025
HL_64365.1
HL_6WNW_0561/4/885:891No text annotation
Not in a motif group
geometric
HL_5TBW_022
HL_94803.1
HL_6WNW_0571/4/955:962No text annotation
Not in a motif group
geometric
HL_7A0S_026
HL_42097.1
HL_6WNW_0581/4/978:985No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.2
HL_6WNW_0591/4/1061:1067No text annotation
Not in a motif group
geometric
HL_2ZNI_001
HL_75407.1
HL_6WNW_0601/4/1104:1110No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_6WNW_0611/4/1192:1202No text annotation
Not in a motif group
geometric
HL_5TBW_022
HL_94803.1
HL_6WNW_0621/4/1220:1227No text annotation
Not in a motif group
geometric
HL_7RQB_022
HL_84085.2
HL_6WNW_0631/4/1299:1306No text annotation
Not in a motif group
HL_6WNW_0641/4/1350:1355Other HL
Not in a motif group
geometric
HL_5J7L_164
HL_87030.2
HL_6WNW_0651/4/1409:1417T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5J7L_165
HL_89380.2
HL_6WNW_0661/4/1452:1458No text annotation
Not in a motif group
geometric
HL_5J7L_166
HL_46680.1
HL_6WNW_0671/4/1491:1496Other HL
Not in a motif group
geometric
HL_5J7L_167
HL_87030.2
HL_6WNW_0681/4/1517:1526No text annotation
Not in a motif group
geometric
HL_4V9F_037
HL_69023.2
HL_6WNW_0691/4/1579:1587No text annotation
Not in a motif group
geometric
HL_4V9F_041
HL_49678.1
HL_6WNW_0701/4/1620:1626No text annotation
Not in a motif group
geometric
HL_5J7L_170
HL_46680.1
HL_6WNW_0711/4/1661:1666Other HL
Not in a motif group
geometric
HL_3V7E_002
HL_03562.2
HL_6WNW_0721/4/1693:1696No text annotation
Not in a motif group
geometric
HL_7RQB_039
HL_38927.2
HL_6WNW_0731/4/1740:1747No text annotation
Not in a motif group
geometric
HL_7RQB_040
HL_64430.2
HL_6WNW_0741/4/1758:1764GNRA with one bulged base
Not in a motif group
geometric
HL_5J7L_174
HL_42097.1
HL_6WNW_0751/4/1819:1824UNCG
Not in a motif group
geometric
HL_4PMI_004
HL_03562.2
HL_6WNW_0761/4/1855:1861No text annotation
Not in a motif group
geometric
HL_361D_002
HL_90617.2
HL_6WNW_0771/4/1880:1884No text annotation
Not in a motif group
geometric
HL_5J7L_177
HL_76539.2
HL_6WNW_0781/4/1905:1915No text annotation
Not in a motif group
geometric
HL_5J7L_178
HL_43613.5
HL_6WNW_0791/4/1934:1939No text annotation
Not in a motif group
geometric
HL_5J7L_179
HL_42097.1
HL_6WNW_0801/4/1996:2001No text annotation
Not in a motif group
geometric
HL_5J7L_179
HL_42097.1
HL_6WNW_0811/4/2038:2048No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_6WNW_0821/4/2077:2085No text annotation
Not in a motif group
geometric
HL_7RQB_049
HL_51824.1
HL_6WNW_0831/4/2155:2164No text annotation
Not in a motif group
geometric
HL_4WF9_047
HL_90642.6
HL_6WNW_0841/4/2270:2277No text annotation
Not in a motif group
HL_6WNW_0851/4/2337:2343No text annotation
Not in a motif group
geometric
HL_5J7L_185
HL_16845.6
HL_6WNW_0861/4/2376:2384No text annotation
Not in a motif group
geometric
HL_7A0S_052
HL_53171.2
HL_6WNW_0871/4/2392:2404No text annotation
Not in a motif group
geometric
HL_5J7L_187
HL_19870.6
HL_6WNW_0881/4/2431:2441No text annotation
Not in a motif group
geometric
HL_5J7L_188
HL_11805.3
HL_6WNW_0891/4/2452:2459No text annotation
Not in a motif group
geometric
HL_5J7L_189
HL_12078.2
HL_6WNW_0901/4/2484:2489Other HL
Not in a motif group
geometric
HL_5J7L_190
HL_87030.2
HL_6WNW_0911/4/2502:2507No text annotation
Not in a motif group
geometric
HL_7RQB_020
HL_42097.1
HL_6WNW_0921/4/2532:2541No text annotation
Not in a motif group
geometric
HL_5J7L_192
HL_30784.2
HL_6WNW_0931/4/2599:2607No text annotation
Not in a motif group
geometric
HL_4WF9_056
HL_06192.2
HL_6WNW_0941/4/2656:2663No text annotation
Not in a motif group
geometric
HL_5J7L_194
HL_88526.2
HL_6WNW_0951/4/2679:2685No text annotation
Not in a motif group
geometric
HL_5TBW_063
HL_43656.2
HL_6WNW_0961/4/2722:2727GNRA
Not in a motif group
geometric
HL_5J7L_027
HL_42097.1
HL_6WNW_0971/4/2786:2791No text annotation
Not in a motif group
geometric
HL_7RQB_064
HL_42097.1
HL_6WNW_0981/4/2829:2834Ribsomal LSU H95
Not in a motif group
geometric
HL_5J7L_198
HL_46680.1
HL_6WNW_0991/4/2873:2887No text annotation
Not in a motif group
geometric
HL_5J7L_199
HL_56677.7
HL_6WNW_1001/4/2923:2929No text annotation
Not in a motif group
geometric
HL_7A0S_023
HL_27930.1
HL_6WNW_1011/4/2947:2955No text annotation
Not in a motif group
geometric
HL_5J7L_201
HL_27930.1
HL_6WNW_1021/4/2984:2989Other HL
Not in a motif group
geometric
HL_5J7L_202
HL_42097.1
HL_6WNW_1031/5/13:22No text annotation
Not in a motif group
homologous
HL_1QF6_001
NA
HL_6WNW_1041/5/31:39No text annotation
Not in a motif group
homologous
HL_6CFJ_107
NA
HL_6WNW_1051/5/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_3WQY_003
HL_22280.1
HL_6WNW_1061/7/13:22No text annotation
Not in a motif group
homologous
HL_3KFU_004
NA
HL_6WNW_1071/7/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_5IBB_210
HL_53597.2
HL_6WNW_1081/7/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_3WQY_003
HL_22280.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6WNW_0011/3/30:32,
1/3/552:553
Single bulged G
Not in a motif group
homologous
IL_6CZR_113
IL_00225.2
IL_6WNW_0021/3/44:45,
1/3/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_6WNW_0031/3/47:52,
1/3/359:361
No text annotation
Not in a motif group
geometric
IL_5J7L_003
IL_11178.1
IL_6WNW_0041/3/54:56,
1/3/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_6WNW_0051/3/63:67,
1/3/102:104
No text annotation
Not in a motif group
geometric
IL_4V88_426
IL_95997.1
IL_6WNW_0061/3/67:69,
1/3/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_6WNW_0071/3/70:73,
1/3/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_6WNW_0081/3/75:78,
1/3/91:95
No text annotation
Not in a motif group
IL_6WNW_0091/3/128:131,
1/3/231:233
No text annotation
Not in a motif group
IL_6WNW_0101/3/132:136,
1/3/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_6WNW_0111/3/144:146,
1/3/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_6WNW_0121/3/147:153,
1/3/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_6WNW_0131/3/203:206,
1/3/213:214
Minor groove platform
Not in a motif group
geometric
IL_3MXH_005
IL_15052.1
IL_6WNW_0141/3/242:247,
1/3/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_6WNW_0151/3/249:252,
1/3/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_6WNW_0161/3/292:293,
1/3/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_6WNW_0171/3/367:369,
1/3/392:393
Single bulged U
Not in a motif group
geometric
IL_4LFB_014
IL_83039.13
IL_6WNW_0181/3/371:375,
1/3/389:390
C-loop
Not in a motif group
homologous
IL_6CZR_127
IL_75255.1
IL_6WNW_0191/3/375:376,
1/3/387:389
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_6WNW_0201/3/408:416,
1/3/427:434
No text annotation
Not in a motif group
IL_6WNW_0211/3/440:442,
1/3/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_6WNW_0221/3/446:450,
1/3/483:488
tSH-tHW-tWW
Not in a motif group
geometric
IL_5J7L_022
IL_88269.3
IL_6WNW_0231/3/450:453,
1/3/479:483
No text annotation
Not in a motif group
IL_6WNW_0241/3/453:455,
1/3/477:479
No text annotation
Not in a motif group
geometric
IL_6CZR_118
IL_95997.1
IL_6WNW_0251/3/504:511,
1/3/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_6WNW_0261/3/515:521,
1/3/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_6WNW_0271/3/569:575,
1/3/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_6WNW_0281/3/580:584,
1/3/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_6WNW_0291/3/594:596,
1/3/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.1
IL_6WNW_0301/3/597:598,
1/3/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_6WNW_0311/3/605:612,
1/3/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_6WNW_0321/3/654:655,
1/3/751:754
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_5J7L_031
IL_50694.2
IL_6WNW_0331/3/659:660,
1/3/745:747
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_6WNW_0341/3/662:666,
1/3/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_6WNW_0351/3/673:678,
1/3/712:717
No text annotation
Not in a motif group
geometric
IL_5J7L_034
IL_04668.1
IL_6WNW_0361/3/684:688,
1/3/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_6WNW_0371/3/774:778,
1/3/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_6WNW_0381/3/779:783,
1/3/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_6WNW_0391/3/887:894,
1/3/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_6WNW_0401/3/922:923,
1/3/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.2
IL_6WNW_0411/3/925:927,
1/3/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_6WNW_0421/3/933:935,
1/3/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_6WNW_0431/3/953:954,
1/3/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_6WNW_0441/3/993:997,
1/3/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_5J7L_043
IL_47078.1
IL_6WNW_0451/3/998:999,
1/3/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_6WNW_0461/3/1048:1050,
1/3/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_6WNW_0471/3/1051:1056,
1/3/1204:1207
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_473
IL_30621.2
IL_6WNW_0481/3/1057:1058,
1/3/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_6WNW_0491/3/1060:1061,
1/3/1195:1197
Single bulged U
Not in a motif group
homologous
IL_4LFB_046
IL_83039.13
IL_6WNW_0501/3/1061:1063,
1/3/1193:1195
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_95997.1
IL_6WNW_0511/3/1124:1128,
1/3/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_6WNW_0521/3/1129:1132,
1/3/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_6WNW_0531/3/1158:1161,
1/3/1175:1181
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_6WNW_0541/3/1247:1253,
1/3/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_6WNW_0551/3/1255:1258,
1/3/1277:1282
No text annotation
Not in a motif group
homologous
IL_5J7L_055
IL_75461.4
IL_6WNW_0561/3/1259:1263,
1/3/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_6WNW_0571/3/1303:1308,
1/3/1329:1334
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_6WNW_0581/3/1399:1401,
1/3/1501:1504
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_6WNW_0591/3/1401:1404,
1/3/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_6WNW_0601/3/1405:1407,
1/3/1494:1496
No text annotation
Not in a motif group
geometric
IL_5VCI_002
IL_95997.1
IL_6WNW_0611/3/1407:1409,
1/3/1491:1494
Decoding loop related
Not in a motif group
geometric
IL_2O3X_003
IL_82842.2
IL_6WNW_0621/3/1412:1415,
1/3/1485:1488
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_6CZR_168
IL_67743.1
IL_6WNW_0631/3/1416:1419,
1/3/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_6WNW_0641/3/1430:1435,
1/3/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_6WNW_0651/3/1440:1442,
1/3/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_6WNW_0661/3/1445:1448,
1/3/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5
IL_6WNW_0671/4/24:30,
1/4/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_4WF9_001
IL_66414.6
IL_6WNW_0681/4/36:37,
1/4/442:444
Single bulged A
Not in a motif group
geometric
IL_7RQB_002
IL_37497.2
IL_6WNW_0691/4/43:44,
1/4/434:436
Minor groove platform
Not in a motif group
geometric
IL_5J7L_247
IL_42622.2
IL_6WNW_0701/4/81:85,
1/4/97:105
No text annotation
Not in a motif group
IL_6WNW_0711/4/183:184,
1/4/212:214
Single stack bend
Not in a motif group
geometric
IL_5J7L_249
IL_76488.2
IL_6WNW_0721/4/188:194,
1/4/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7RQB_006
IL_04346.7
IL_6WNW_0731/4/239:245,
1/4/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_251
IL_76042.2
IL_6WNW_0741/4/269:271,
1/4/366:370
No text annotation
Not in a motif group
geometric
IL_5J7L_252
IL_47972.1
IL_6WNW_0751/4/274:281,
1/4/359:363
No text annotation
Not in a motif group
geometric
IL_5J7L_253
IL_77870.1
IL_6WNW_0761/4/293:295,
1/4/343:347
No text annotation
Not in a motif group
geometric
IL_5J7L_254
IL_69440.1
IL_6WNW_0771/4/481:484,
1/4/496:509
No text annotation
Not in a motif group
geometric
IL_5J7L_255
IL_60992.6
IL_6WNW_0781/4/536:539,
1/4/554:557
Double sheared
Not in a motif group
geometric
IL_5J7L_256
IL_09705.9
IL_6WNW_0791/4/564:566,
1/4/575:577
No text annotation
Not in a motif group
geometric
IL_5J7L_257
IL_95997.1
IL_6WNW_0801/4/606:610,
1/4/618:622
AAA cross-strand stack
Not in a motif group
geometric
IL_5J7L_258
IL_17136.1
IL_6WNW_0811/4/672:674,
1/4/806:808
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_95997.1
IL_6WNW_0821/4/674:678,
1/4/799:806
No text annotation
Not in a motif group
geometric
IL_7RQB_018
IL_17470.6
IL_6WNW_0831/4/697:698,
1/4/763:765
Single bulged A
Not in a motif group
geometric
IL_5J7L_261
IL_37497.2
IL_6WNW_0841/4/702:703,
1/4/728:730
Single bulged G
Not in a motif group
geometric
IL_4V9F_026
IL_00225.2
IL_6WNW_0851/4/703:707,
1/4/724:728
Triple sheared
Not in a motif group
geometric
IL_5J7L_263
IL_56467.8
IL_6WNW_0861/4/738:740,
1/4/757:758
Major groove platform
Not in a motif group
geometric
IL_5J7L_264
IL_27635.1
IL_6WNW_0871/4/775:777,
1/4/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_265
IL_90991.6
IL_6WNW_0881/4/837:838,
1/4/940:942
Single stack bend
Not in a motif group
geometric
IL_7RQB_024
IL_92001.1
IL_6WNW_0891/4/844:847,
1/4/933:934
Other IL
Not in a motif group
geometric
IL_5J7L_267
IL_92001.1
IL_6WNW_0901/4/847:848,
1/4/930:933
Stack outside cWW
Not in a motif group
geometric
IL_5J7L_268
IL_37629.1
IL_6WNW_0911/4/850:851,
1/4/926:928
Single stack bend
Not in a motif group
geometric
IL_5J7L_269
IL_76488.2
IL_6WNW_0921/4/856:862,
1/4/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_5J7L_270
IL_93830.3
IL_6WNW_0931/4/862:863,
1/4/913:915
Single bulged G
Not in a motif group
geometric
IL_5J7L_271
IL_00225.2
IL_6WNW_0941/4/864:868,
1/4/909:912
C-loop
Not in a motif group
geometric
IL_5J7L_272
IL_63596.6
IL_6WNW_0951/4/870:872,
1/4/905:907
No text annotation
Not in a motif group
geometric
IL_5J7L_273
IL_95997.1
IL_6WNW_0961/4/875:879,
1/4/898:902
Triple sheared
Not in a motif group
geometric
IL_4WFL_001
IL_56467.8
IL_6WNW_0971/4/880:881,
1/4/895:897
No text annotation
Not in a motif group
IL_6WNW_0981/4/994:996,
1/4/1287:1288
Single bulged C
Not in a motif group
geometric
IL_7RQB_035
IL_61258.12
IL_6WNW_0991/4/998:1002,
1/4/1281:1285
UAA/GAN
Not in a motif group
geometric
IL_4WF9_036
IL_89002.2
IL_6WNW_1001/4/1004:1011,
1/4/1278:1279
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5J7L_278
IL_15861.7
IL_6WNW_1011/4/1011:1013,
1/4/1277:1278
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.13
IL_6WNW_1021/4/1018:1024,
1/4/1268:1272
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_6WNW_1031/4/1039:1047,
1/4/1137:1145
Bacterial 5S Loop E
Not in a motif group
geometric
IL_5J7L_359
IL_56455.3
IL_6WNW_1041/4/1083:1084,
1/4/1131:1133
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.2
IL_6WNW_1051/4/1089:1094,
1/4/1122:1126
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_6WNW_1061/4/1096:1097,
1/4/1117:1120
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4V9F_103
IL_09061.6
IL_6WNW_1071/4/1100:1104,
1/4/1110:1114
Symmetric double minor groove platform
Not in a motif group
geometric
IL_5J7L_358
IL_58103.6
IL_6WNW_1081/4/1159:1162,
1/4/1249:1251
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_7RQB_041
IL_82068.2
IL_6WNW_1091/4/1166:1169,
1/4/1242:1245
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5J7L_283
IL_30621.2
IL_6WNW_1101/4/1171:1179,
1/4/1236:1240
Kink-turn
Not in a motif group
geometric
IL_4V9F_042
IL_90538.4
IL_6WNW_1111/4/1187:1191,
1/4/1203:1207
No text annotation
Not in a motif group
IL_6WNW_1121/4/1215:1219,
1/4/1228:1230
Major groove platform with extra cWW
Not in a motif group
geometric
IL_1MMS_002
IL_05564.2
IL_6WNW_1131/4/1324:1326,
1/4/1375:1378
Isolated cWS basepair
Not in a motif group
geometric
IL_5J7L_286
IL_52767.2
IL_6WNW_1141/4/1330:1334,
1/4/1368:1371
No text annotation
Not in a motif group
geometric
IL_5J7L_287
IL_91920.1
IL_6WNW_1151/4/1336:1343,
1/4/1362:1366
Kink-turn
Not in a motif group
geometric
IL_5J7L_288
IL_70923.2
IL_6WNW_1161/4/1390:1397,
1/4/2139:2145
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_289
IL_04346.7
IL_6WNW_1171/4/1438:1441,
1/4/1731:1732
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_050
IL_50694.2
IL_6WNW_1181/4/1447:1451,
1/4/1459:1461
C-loop
Not in a motif group
geometric
IL_5J7L_291
IL_63596.6
IL_6WNW_1191/4/1479:1483,
1/4/1504:1508
UAA/GAN
Not in a motif group
geometric
IL_5J7L_292
IL_89002.2
IL_6WNW_1201/4/1485:1489,
1/4/1498:1502
tSH-tHW-tHS
Not in a motif group
geometric
IL_5J7L_293
IL_17136.1
IL_6WNW_1211/4/1543:1544,
1/4/1710:1715
No text annotation
Not in a motif group
geometric
IL_5J7L_294
IL_90348.1
IL_6WNW_1221/4/1545:1549,
1/4/1705:1709
UAA/GAN
Not in a motif group
geometric
IL_5J7L_295
IL_89002.2
IL_6WNW_1231/4/1560:1563,
1/4/1685:1689
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5J7L_296
IL_55178.1
IL_6WNW_1241/4/1565:1568,
1/4/1679:1683
tSH-tHW
Not in a motif group
geometric
IL_5J7L_297
IL_04059.1
IL_6WNW_1251/4/1578:1579,
1/4/1587:1589
Single bulged U
Not in a motif group
geometric
IL_5J7L_298
IL_83039.13
IL_6WNW_1261/4/1596:1599,
1/4/1648:1652
No text annotation
Not in a motif group
geometric
IL_5J7L_299
IL_68574.2
IL_6WNW_1271/4/1602:1606,
1/4/1641:1645
tSH-tHW-tHS
Not in a motif group
geometric
IL_5J7L_300
IL_38862.1
IL_6WNW_1281/4/1609:1610,
1/4/1635:1638
No text annotation
Not in a motif group
geometric
IL_5J7L_301
IL_67474.4
IL_6WNW_1291/4/1617:1619,
1/4/1627:1628
Single bulged A
Not in a motif group
geometric
IL_5J7L_302
IL_37497.2
IL_6WNW_1301/4/1654:1657,
1/4/1670:1674
UAA/GAN variation
Not in a motif group
geometric
IL_5J7L_303
IL_07235.1
IL_6WNW_1311/4/1779:1784,
1/4/2132:2134
No text annotation
Not in a motif group
geometric
IL_5J7L_304
IL_12566.2
IL_6WNW_1321/4/1791:1793,
1/4/2123:2125
Isolated tWW turn
Not in a motif group
geometric
IL_5J7L_305
IL_54997.7
IL_6WNW_1331/4/1794:1797,
1/4/2121:2122
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_6WNW_1341/4/1797:1802,
1/4/2118:2121
Intercalated tWH
Not in a motif group
geometric
IL_5J7L_307
IL_82842.2
IL_6WNW_1351/4/1814:1819,
1/4/1824:1830
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_7RQB_068
IL_65969.2
IL_6WNW_1361/4/1840:1846,
1/4/1870:1874
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_309
IL_88269.3
IL_6WNW_1371/4/1848:1852,
1/4/1864:1868
Triple sheared
Not in a motif group
geometric
IL_5J7L_310
IL_56467.8
IL_6WNW_1381/4/1898:1899,
1/4/2108:2110
Single bulged A
Not in a motif group
geometric
IL_7A0S_064
IL_37497.2
IL_6WNW_1391/4/1926:1932,
1/4/1941:1949
Kink-turn related
Not in a motif group
geometric
IL_5J7L_313
IL_17069.3
IL_6WNW_1401/4/1965:1968,
1/4/2030:2031
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_5J7L_314
IL_88739.1
IL_6WNW_1411/4/1969:1970,
1/4/2026:2029
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_5J7L_315
IL_16396.2
IL_6WNW_1421/4/1974:1977,
1/4/2021:2022
Major groove minor groove platform; mini C-loop
Not in a motif group
geometric
IL_1S03_003
IL_09061.6
IL_6WNW_1431/4/1992:1995,
1/4/2002:2006
UAA/GAN related
Not in a motif group
geometric
IL_5J7L_317
IL_77691.1
IL_6WNW_1441/4/2061:2062,
1/4/2092:2095
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_318
IL_59677.2
IL_6WNW_1451/4/2062:2073,
1/4/2089:2092
No text annotation
Not in a motif group
geometric
IL_7A0S_072
IL_81589.2
IL_6WNW_1461/4/2178:2180,
1/4/2745:2746
Major groove platform
Not in a motif group
geometric
IL_5J7L_320
IL_27635.1
IL_6WNW_1471/4/2182:2184,
1/4/2740:2743
No text annotation
Not in a motif group
IL_6WNW_1481/4/2195:2197,
1/4/2570:2571
Single bulged U
Not in a motif group
geometric
IL_4V9F_074
IL_83039.13
IL_6WNW_1491/4/2198:2199,
1/4/2566:2569
Minor groove platform
Not in a motif group
geometric
IL_7RQB_081
IL_42622.2
IL_6WNW_1501/4/2209:2211,
1/4/2364:2367
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_5J7L_325
IL_38958.7
IL_6WNW_1511/4/2213:2215,
1/4/2360:2362
No text annotation
Not in a motif group
geometric
IL_5J7L_326
IL_95997.1
IL_6WNW_1521/4/2230:2233,
1/4/2312:2315
No text annotation
Not in a motif group
IL_6WNW_1531/4/2233:2252,
1/4/2302:2312
No text annotation
Not in a motif group
IL_6WNW_1541/4/2330:2332,
1/4/2348:2349
Single bulged U
Not in a motif group
geometric
IL_5J7L_331
IL_83039.13
IL_6WNW_1551/4/2478:2481,
1/4/2492:2495
Double sheared
Not in a motif group
geometric
IL_5J7L_333
IL_09705.9
IL_6WNW_1561/4/2529:2531,
1/4/2542:2543
No text annotation
Not in a motif group
IL_6WNW_1591/4/2585:2587,
1/4/2621:2622
Major groove platform
Not in a motif group
geometric
IL_7A0S_085
IL_27635.1
IL_6WNW_1601/4/2587:2589,
1/4/2617:2621
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_5J7L_337
IL_92788.2
IL_6WNW_1611/4/2594:2598,
1/4/2608:2612
Triple sheared
Not in a motif group
geometric
IL_5J7L_338
IL_56467.8
IL_6WNW_1621/4/2635:2636,
1/4/2708:2710
Major groove platform
Not in a motif group
geometric
IL_5TBW_107
IL_76223.2
IL_6WNW_1631/4/2638:2640,
1/4/2702:2706
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_90933.2
IL_6WNW_1641/4/2640:2641,
1/4/2699:2702
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_6WNW_1651/4/2650:2651,
1/4/2668:2671
Minor groove platform with intercalation
Not in a motif group
geometric
IL_5J7L_342
IL_95601.3
IL_6WNW_1661/4/2719:2720,
1/4/2729:2731
Single bulged A
Not in a motif group
geometric
IL_7RQB_101
IL_37497.2
IL_6WNW_1671/4/2764:2768,
1/4/2902:2910
No text annotation
Not in a motif group
geometric
IL_5J7L_345
IL_04638.1
IL_6WNW_1681/4/2780:2786,
1/4/2791:2796
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_7RQB_103
IL_16458.1
IL_6WNW_1691/4/2808:2812,
1/4/2853:2855
C-loop
Not in a motif group
geometric
IL_5J7L_347
IL_63596.6
IL_6WNW_1701/4/2815:2819,
1/4/2846:2850
No text annotation
Not in a motif group
geometric
IL_5J7L_348
IL_08296.3
IL_6WNW_1711/4/2823:2824,
1/4/2839:2842
Multiple bulged bases
Not in a motif group
geometric
IL_4WF9_103
IL_71530.2
IL_6WNW_1721/4/2865:2870,
1/4/2890:2895
UAA/GAN with extra cWW
Not in a motif group
geometric
IL_5J7L_350
IL_49767.5
IL_6WNW_1731/4/2934:2939,
1/4/3017:3020
No text annotation
Not in a motif group
geometric
IL_5J7L_351
IL_49460.2
IL_6WNW_1741/4/2966:2967,
1/4/3006:3008
Major groove intercalation
Not in a motif group
geometric
IL_5J7L_352
IL_16396.2
IL_6WNW_1751/4/2971:2974,
1/4/2998:3002
Multiple bulged bases with non-canonical cWW
Not in a motif group
geometric
IL_5J7L_353
IL_58764.3
IL_6WNW_1761/4/2975:2980,
1/4/2993:2997
No text annotation
Not in a motif group
geometric
IL_5J7L_354
IL_83162.5

Problematic loops

#loop idProblemSequence
IL_6WNW_157Single stack bend
IL_6WNW_158Major groove platform

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6WNW_0011/3/46:47,
1/3/361:367,
1/3/393:395
No text annotation
Not in a motif group
homologous
J3_5J7L_001
NA
J3_6WNW_0021/3/586:588,
1/3/651:654,
1/3/754:755
No text annotation
Not in a motif group
J3_6WNW_0031/3/672:673,
1/3/717:725,
1/3/732:734
No text annotation
Not in a motif group
homologous
J3_5J7L_003
NA
J3_6WNW_0041/3/826:829,
1/3/857:861,
1/3/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_6WNW_0051/3/936:939,
1/3/1344:1350,
1/3/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_6WNW_0061/3/943:946,
1/3/1235:1237,
1/3/1337:1340
No text annotation
Not in a motif group
homologous
J3_4LFB_003
NA
J3_6WNW_0071/3/955:962,
1/3/973:984,
1/3/1221:1225
No text annotation
Not in a motif group
J3_6WNW_0081/3/990:993,
1/3/1045:1047,
1/3/1210:1215
No text annotation
Not in a motif group
homologous
J3_5J7L_007
NA
J3_6WNW_0091/3/1003:1006,
1/3/1023:1028,
1/3/1033:1037
No text annotation
Not in a motif group
J3_6WNW_0101/3/1063:1068,
1/3/1107:1113,
1/3/1187:1193
No text annotation
Not in a motif group
J3_6WNW_0111/3/1073:1074,
1/3/1083:1087,
1/3/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_6WNW_0121/3/1116:1118,
1/3/1155:1158,
1/3/1181:1184
No text annotation
Not in a motif group
homologous
J3_5J7L_010
NA
J3_6WNW_0131/3/1237:1241,
1/3/1296:1303,
1/3/1334:1337
No text annotation
Not in a motif group
J3_6WNW_0141/4/30:31,
1/4/474:481,
1/4/509:510
No text annotation
Not in a motif group
J3_6WNW_0151/4/56:57,
1/4/70:76,
1/4/110:114
No text annotation
Not in a motif group
J3_6WNW_0161/4/683:689,
1/4/773:775,
1/4/791:794
No text annotation
Not in a motif group
J3_6WNW_0171/4/698:700,
1/4/732:736,
1/4/760:763
No text annotation
Not in a motif group
J3_6WNW_0181/4/1048:1052,
1/4/1076:1082,
1/4/1134:1136
No text annotation
Not in a motif group
homologous
J3_5J7L_049
NA
J3_6WNW_0191/4/1183:1185,
1/4/1209:1215,
1/4/1230:1232
No text annotation
Not in a motif group
J3_6WNW_0201/4/1426:1431,
1/4/1753:1755,
1/4/1767:1770
No text annotation
Not in a motif group
J3_6WNW_0211/4/1434:1437,
1/4/1733:1739,
1/4/1748:1750
No text annotation
Not in a motif group
J3_6WNW_0221/4/1472:1477,
1/4/1510:1513,
1/4/1530:1531
No text annotation
Not in a motif group
J3_6WNW_0231/4/2219:2221,
1/4/2324:2328,
1/4/2351:2356
No text annotation
Not in a motif group
J3_6WNW_0241/4/2423:2427,
1/4/2445:2451,
1/4/2460:2465
No text annotation
Not in a motif group
J3_6WNW_0251/4/2645:2648,
1/4/2673:2675,
1/4/2689:2695
No text annotation
Not in a motif group
J3_6WNW_0261/4/2917:2919,
1/4/2933:2934,
1/4/3020:3022
No text annotation
Not in a motif group
J3_6WNW_0271/4/2940:2943,
1/4/2959:2964,
1/4/3010:3016
No text annotation
Not in a motif group

Problematic loops

No problematic loops


Coloring options:
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