7D6Z Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_7D6Z_004 | 1/3/13:22 | No text annotation Not in a motif group | homologous HL_1QF6_001 NA | |
HL_7D6Z_010 | 1/A/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
HL_7D6Z_011 | 1/A/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
HL_7D6Z_012 | 1/A/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
HL_7D6Z_013 | 1/A/137:142 | No text annotation Not in a motif group | geometric HL_5TBW_040 HL_38927.2 | |
HL_7D6Z_014 | 1/A/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
HL_7D6Z_015 | 1/A/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_06192.2 | |
HL_7D6Z_016 | 1/A/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
HL_7D6Z_017 | 1/A/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
HL_7D6Z_018 | 1/A/305:312 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
HL_7D6Z_019 | 1/A/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
HL_7D6Z_020 | 1/A/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
HL_7D6Z_021 | 1/A/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
HL_7D6Z_022 | 1/A/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
HL_7D6Z_023 | 1/A/462:467 | No text annotation Not in a motif group | homologous HL_7A0S_015 HL_42097.1 | |
HL_7D6Z_024 | 1/A/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
HL_7D6Z_026 | 1/A/564:577 | No text annotation Not in a motif group | ||
HL_7D6Z_027 | 1/A/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
HL_7D6Z_028 | 1/A/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
HL_7D6Z_029 | 1/A/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_77805.2 | |
HL_7D6Z_030 | 1/A/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
HL_7D6Z_031 | 1/A/744:753 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
HL_7D6Z_032 | 1/A/779:785 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
HL_7D6Z_033 | 1/A/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
HL_7D6Z_035 | 1/A/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
HL_7D6Z_036 | 1/A/978:985 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_64430.2 | |
HL_7D6Z_037 | 1/A/1063:1075 | No text annotation Not in a motif group | ||
HL_7D6Z_038 | 1/A/1092:1099 | No text annotation Not in a motif group | ||
HL_7D6Z_040 | 1/A/1222:1227 | No text annotation Not in a motif group | homologous HL_4WF9_031 HL_87030.2 | |
HL_7D6Z_041 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
HL_7D6Z_042 | 1/A/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
HL_7D6Z_043 | 1/A/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
HL_7D6Z_044 | 1/A/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
HL_7D6Z_045 | 1/A/1451:1459 | No text annotation Not in a motif group | homologous HL_5J7L_169 HL_53837.1 | |
HL_7D6Z_046 | 1/A/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
HL_7D6Z_047 | 1/A/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_03562.2 | |
HL_7D6Z_048 | 1/A/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
HL_7D6Z_049 | 1/A/1612:1619 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
HL_7D6Z_050 | 1/A/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
HL_7D6Z_051 | 1/A/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
HL_7D6Z_052 | 1/A/1728:1731 | No text annotation Not in a motif group | geometric HL_5TBW_071 HL_53837.1 | |
HL_7D6Z_053 | 1/A/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
HL_7D6Z_054 | 1/A/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
HL_7D6Z_055 | 1/A/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
HL_7D6Z_056 | 1/A/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_42097.1 | |
HL_7D6Z_058 | 1/A/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
HL_7D6Z_059 | 1/A/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
HL_7D6Z_060 | 1/A/2143:2148 | UNCG Not in a motif group | homologous HL_3U4M_001 HL_03562.2 | |
HL_7D6Z_061 | 1/A/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
HL_7D6Z_062 | 1/A/2248:2256 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.2 | |
HL_7D6Z_063 | 1/A/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
HL_7D6Z_064 | 1/A/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
HL_7D6Z_065 | 1/A/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_12078.2 | |
HL_7D6Z_066 | 1/A/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
HL_7D6Z_067 | 1/A/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
HL_7D6Z_068 | 1/A/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
HL_7D6Z_069 | 1/A/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
HL_7D6Z_070 | 1/A/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
HL_7D6Z_071 | 1/A/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
HL_7D6Z_072 | 1/A/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
HL_7D6Z_073 | 1/A/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
HL_7D6Z_074 | 1/A/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
HL_7D6Z_075 | 1/A/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
HL_7D6Z_076 | 1/A/2796:2799 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
HL_7D6Z_077 | 1/A/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
HL_7D6Z_078 | 1/A/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
HL_7D6Z_079 | 1/B/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
HL_7D6Z_080 | 1/B/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
HL_7D6Z_081 | 1/f/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
HL_7D6Z_082 | 1/f/83:86 | No text annotation Not in a motif group | ||
HL_7D6Z_083 | 1/f/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
HL_7D6Z_084 | 1/f/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
HL_7D6Z_085 | 1/f/203:214 | No text annotation Not in a motif group | ||
HL_7D6Z_086 | 1/f/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
HL_7D6Z_087 | 1/f/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
HL_7D6Z_088 | 1/f/319:334 | No text annotation Not in a motif group | ||
HL_7D6Z_089 | 1/f/342:347 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_03562.2 | |
HL_7D6Z_090 | 1/f/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
HL_7D6Z_091 | 1/f/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
HL_7D6Z_092 | 1/f/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
HL_7D6Z_093 | 1/f/522:527 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
HL_7D6Z_094 | 1/f/617:623 | No text annotation Not in a motif group | homologous HL_6CZR_085 HL_26881.1 | |
HL_7D6Z_095 | 1/f/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
HL_7D6Z_096 | 1/f/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
HL_7D6Z_097 | 1/f/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
HL_7D6Z_098 | 1/f/840:846 | No text annotation Not in a motif group | ||
HL_7D6Z_099 | 1/f/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
HL_7D6Z_100 | 1/f/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
HL_7D6Z_101 | 1/f/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
HL_7D6Z_102 | 1/f/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
HL_7D6Z_103 | 1/f/1028:1033 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_75407.1 | |
HL_7D6Z_104 | 1/f/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
HL_7D6Z_105 | 1/f/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
HL_7D6Z_106 | 1/f/1134:1140 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_03562.2 | |
HL_7D6Z_107 | 1/f/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.2 | |
HL_7D6Z_108 | 1/f/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
HL_7D6Z_109 | 1/f/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
HL_7D6Z_110 | 1/f/1355:1367 | No text annotation Not in a motif group | ||
HL_7D6Z_111 | 1/f/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
HL_7D6Z_112 | 1/f/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7D6Z_001 | No text annotation | ||
HL_7D6Z_002 | No text annotation | ||
HL_7D6Z_003 | No text annotation | ||
HL_7D6Z_005 | No text annotation | ||
HL_7D6Z_006 | No text annotation | ||
HL_7D6Z_007 | No text annotation | ||
HL_7D6Z_008 | No text annotation | ||
HL_7D6Z_009 | No text annotation | ||
HL_7D6Z_025 | No text annotation | ||
HL_7D6Z_034 | No text annotation | ||
HL_7D6Z_039 | No text annotation | ||
HL_7D6Z_057 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_7D6Z_001 | 1/2/3:7, 1/2/66:71 | No text annotation Not in a motif group | ||
IL_7D6Z_002 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5J7L_245 IL_66414.6 | |
IL_7D6Z_003 | 1/A/36:37, 1/A/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
IL_7D6Z_004 | 1/A/43:44, 1/A/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
IL_7D6Z_005 | 1/A/81:85, 1/A/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
IL_7D6Z_006 | 1/A/183:184, 1/A/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
IL_7D6Z_007 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.7 | |
IL_7D6Z_008 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
IL_7D6Z_009 | 1/A/269:271, 1/A/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
IL_7D6Z_010 | 1/A/274:281, 1/A/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
IL_7D6Z_011 | 1/A/293:295, 1/A/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
IL_7D6Z_012 | 1/A/481:484, 1/A/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
IL_7D6Z_013 | 1/A/536:539, 1/A/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
IL_7D6Z_014 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
IL_7D6Z_015 | 1/A/672:674, 1/A/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
IL_7D6Z_016 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_5J7L_260 IL_17470.6 | |
IL_7D6Z_017 | 1/A/697:698, 1/A/763:765 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.2 | |
IL_7D6Z_018 | 1/A/702:703, 1/A/728:730 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
IL_7D6Z_019 | 1/A/703:707, 1/A/724:728 | Triple sheared Not in a motif group | homologous IL_4WF9_024 IL_56467.8 | |
IL_7D6Z_020 | 1/A/738:740, 1/A/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
IL_7D6Z_021 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
IL_7D6Z_022 | 1/A/844:848, 1/A/930:934 | No text annotation Not in a motif group | ||
IL_7D6Z_023 | 1/A/850:851, 1/A/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
IL_7D6Z_024 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
IL_7D6Z_025 | 1/A/862:863, 1/A/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.2 | |
IL_7D6Z_026 | 1/A/864:868, 1/A/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
IL_7D6Z_027 | 1/A/870:872, 1/A/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
IL_7D6Z_030 | 1/A/994:996, 1/A/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
IL_7D6Z_031 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
IL_7D6Z_032 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
IL_7D6Z_033 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
IL_7D6Z_034 | 1/A/1018:1024, 1/A/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
IL_7D6Z_035 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
IL_7D6Z_036 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
IL_7D6Z_037 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
IL_7D6Z_039 | 1/A/1059:1062, 1/A/1076:1079 | No text annotation Not in a motif group | homologous IL_6PRV_001 IL_23544.2 | |
IL_7D6Z_040 | 1/A/1087:1091, 1/A/1100:1102 | Major groove platform with extra cWW Not in a motif group | geometric IL_5D8H_003 IL_05564.2 | |
IL_7D6Z_041 | 1/A/1196:1199, 1/A/1246:1250 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
IL_7D6Z_042 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
IL_7D6Z_043 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
IL_7D6Z_044 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
IL_7D6Z_045 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
IL_7D6Z_046 | 1/A/1319:1323, 1/A/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
IL_7D6Z_047 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
IL_7D6Z_048 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
IL_7D6Z_049 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
IL_7D6Z_050 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
IL_7D6Z_051 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
IL_7D6Z_052 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
IL_7D6Z_053 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.13 | |
IL_7D6Z_054 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
IL_7D6Z_055 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
IL_7D6Z_056 | 1/A/1481:1482, 1/A/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.4 | |
IL_7D6Z_057 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
IL_7D6Z_058 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
IL_7D6Z_059 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
IL_7D6Z_060 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
IL_7D6Z_061 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_064 IL_50694.2 | |
IL_7D6Z_062 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
IL_7D6Z_063 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_65969.2 | |
IL_7D6Z_064 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
IL_7D6Z_065 | 1/A/1720:1724, 1/A/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
IL_7D6Z_066 | 1/A/1727:1728, 1/A/1731:1733 | Single bulged C Not in a motif group | geometric IL_5J7L_311 IL_61258.12 | |
IL_7D6Z_067 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
IL_7D6Z_068 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
IL_7D6Z_069 | 1/A/1837:1840, 1/A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
IL_7D6Z_070 | 1/A/1841:1842, 1/A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
IL_7D6Z_072 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
IL_7D6Z_073 | 1/A/1933:1934, 1/A/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
IL_7D6Z_074 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
IL_7D6Z_075 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
IL_7D6Z_076 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
IL_7D6Z_077 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
IL_7D6Z_078 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
IL_7D6Z_079 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
IL_7D6Z_080 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
IL_7D6Z_081 | 1/A/2098:2100, 1/A/2189:2191 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
IL_7D6Z_082 | 1/A/2103:2105, 1/A/2184:2186 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_95997.1 | |
IL_7D6Z_084 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
IL_7D6Z_085 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
IL_7D6Z_086 | 1/A/2401:2403, 1/A/2414:2415 | No text annotation Not in a motif group | ||
IL_7D6Z_087 | 1/A/2453:2454, 1/A/2498:2500 | Single stack bend Not in a motif group | homologous IL_4WF9_089 IL_76488.2 | |
IL_7D6Z_088 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform Not in a motif group | geometric IL_4WF9_090 IL_27635.1 | |
IL_7D6Z_089 | 1/A/2457:2459, 1/A/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
IL_7D6Z_090 | 1/A/2459:2462, 1/A/2488:2493 | No text annotation Not in a motif group | ||
IL_7D6Z_091 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
IL_7D6Z_092 | 1/A/2507:2508, 1/A/2580:2582 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
IL_7D6Z_093 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_340 IL_90933.2 | |
IL_7D6Z_094 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
IL_7D6Z_095 | 1/A/2522:2523, 1/A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
IL_7D6Z_096 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
IL_7D6Z_097 | 1/A/2636:2640, 1/A/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
IL_7D6Z_098 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_5J7L_346 IL_16458.1 | |
IL_7D6Z_099 | 1/A/2680:2684, 1/A/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
IL_7D6Z_100 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
IL_7D6Z_101 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
IL_7D6Z_102 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
IL_7D6Z_103 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A Not in a motif group | geometric IL_4WF9_022 IL_37497.2 | |
IL_7D6Z_104 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_49460.2 | |
IL_7D6Z_105 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
IL_7D6Z_106 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
IL_7D6Z_107 | 1/A/2847:2852, 1/A/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 | |
IL_7D6Z_108 | 1/B/17:18, 1/B/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.2 | |
IL_7D6Z_109 | 1/B/23:28, 1/B/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
IL_7D6Z_110 | 1/B/30:33, 1/B/49:54 | No text annotation Not in a motif group | homologous IL_7A0S_104 IL_05192.1 | |
IL_7D6Z_111 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_5J7L_358 IL_58103.6 | |
IL_7D6Z_112 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
IL_7D6Z_113 | 1/f/30:32, 1/f/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
IL_7D6Z_114 | 1/f/44:45, 1/f/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
IL_7D6Z_115 | 1/f/47:52, 1/f/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
IL_7D6Z_116 | 1/f/54:56, 1/f/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
IL_7D6Z_117 | 1/f/63:67, 1/f/102:104 | Multiple bulged bases, near cWW Not in a motif group | geometric IL_5M0H_002 IL_51629.2 | |
IL_7D6Z_118 | 1/f/67:69, 1/f/99:102 | Minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_006 IL_65006.1 | |
IL_7D6Z_119 | 1/f/70:73, 1/f/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
IL_7D6Z_120 | 1/f/74:83, 1/f/86:96 | No text annotation Not in a motif group | ||
IL_7D6Z_121 | 1/f/128:131, 1/f/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_82068.2 | |
IL_7D6Z_122 | 1/f/132:136, 1/f/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
IL_7D6Z_123 | 1/f/144:146, 1/f/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
IL_7D6Z_124 | 1/f/147:153, 1/f/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
IL_7D6Z_125 | 1/f/242:247, 1/f/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
IL_7D6Z_126 | 1/f/249:253, 1/f/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
IL_7D6Z_127 | 1/f/292:293, 1/f/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
IL_7D6Z_128 | 1/f/367:369, 1/f/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
IL_7D6Z_129 | 1/f/370:375, 1/f/389:391 | No text annotation Not in a motif group | ||
IL_7D6Z_130 | 1/f/375:376, 1/f/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
IL_7D6Z_131 | 1/f/440:442, 1/f/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
IL_7D6Z_132 | 1/f/446:450, 1/f/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_88269.3 | |
IL_7D6Z_133 | 1/f/450:455, 1/f/477:483 | No text annotation Not in a motif group | geometric IL_5J7L_023 IL_70801.1 | |
IL_7D6Z_134 | 1/f/504:511, 1/f/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
IL_7D6Z_135 | 1/f/515:521, 1/f/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
IL_7D6Z_136 | 1/f/569:575, 1/f/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
IL_7D6Z_137 | 1/f/580:584, 1/f/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
IL_7D6Z_138 | 1/f/594:596, 1/f/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
IL_7D6Z_139 | 1/f/597:598, 1/f/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
IL_7D6Z_140 | 1/f/605:612, 1/f/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
IL_7D6Z_141 | 1/f/654:655, 1/f/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
IL_7D6Z_142 | 1/f/659:660, 1/f/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
IL_7D6Z_143 | 1/f/662:666, 1/f/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
IL_7D6Z_144 | 1/f/683:688, 1/f/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
IL_7D6Z_145 | 1/f/774:778, 1/f/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
IL_7D6Z_146 | 1/f/779:783, 1/f/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
IL_7D6Z_147 | 1/f/887:894, 1/f/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
IL_7D6Z_148 | 1/f/922:923, 1/f/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
IL_7D6Z_149 | 1/f/925:927, 1/f/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
IL_7D6Z_150 | 1/f/933:935, 1/f/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
IL_7D6Z_151 | 1/f/953:954, 1/f/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
IL_7D6Z_152 | 1/f/993:997, 1/f/1044:1045 | Minor groove platform Not in a motif group | geometric IL_5J7L_043 IL_47078.1 | |
IL_7D6Z_153 | 1/f/998:999, 1/f/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
IL_7D6Z_154 | 1/f/1048:1050, 1/f/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
IL_7D6Z_155 | 1/f/1052:1056, 1/f/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
IL_7D6Z_156 | 1/f/1057:1058, 1/f/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
IL_7D6Z_157 | 1/f/1060:1061, 1/f/1195:1197 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
IL_7D6Z_158 | 1/f/1061:1063, 1/f/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
IL_7D6Z_159 | 1/f/1124:1128, 1/f/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
IL_7D6Z_160 | 1/f/1129:1132, 1/f/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
IL_7D6Z_161 | 1/f/1158:1161, 1/f/1175:1181 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
IL_7D6Z_162 | 1/f/1247:1253, 1/f/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
IL_7D6Z_163 | 1/f/1255:1258, 1/f/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
IL_7D6Z_164 | 1/f/1259:1263, 1/f/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
IL_7D6Z_165 | 1/f/1303:1308, 1/f/1329:1334 | No text annotation Not in a motif group | homologous IL_5J7L_057 IL_19954.2 | |
IL_7D6Z_166 | 1/f/1399:1401, 1/f/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
IL_7D6Z_167 | 1/f/1401:1404, 1/f/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
IL_7D6Z_168 | 1/f/1405:1407, 1/f/1494:1496 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
IL_7D6Z_169 | 1/f/1407:1409, 1/f/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
IL_7D6Z_170 | 1/f/1412:1414, 1/f/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
IL_7D6Z_171 | 1/f/1416:1419, 1/f/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
IL_7D6Z_172 | 1/f/1430:1435, 1/f/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
IL_7D6Z_173 | 1/f/1440:1442, 1/f/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_42622.2 | |
IL_7D6Z_174 | 1/f/1445:1448, 1/f/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_7D6Z_028 | Triple sheared | ||
IL_7D6Z_029 | No text annotation | ||
IL_7D6Z_038 | No text annotation | ||
IL_7D6Z_071 | Major groove minor groove platform; mini C-loop | ||
IL_7D6Z_083 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_7D6Z_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
J3_7D6Z_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
J3_7D6Z_003 | 1/A/682:689, 1/A/773:775, 1/A/791:795 | No text annotation Not in a motif group | ||
J3_7D6Z_004 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
J3_7D6Z_005 | 1/A/1055:1058, 1/A/1080:1087, 1/A/1102:1104 | No text annotation Not in a motif group | ||
J3_7D6Z_006 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
J3_7D6Z_007 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
J3_7D6Z_008 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
J3_7D6Z_009 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
J3_7D6Z_010 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation Not in a motif group | ||
J3_7D6Z_011 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation Not in a motif group | ||
J3_7D6Z_012 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation Not in a motif group | ||
J3_7D6Z_013 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
J3_7D6Z_014 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA | |
J3_7D6Z_015 | 1/f/46:47, 1/f/361:367, 1/f/393:395 | No text annotation Not in a motif group | ||
J3_7D6Z_016 | 1/f/586:588, 1/f/651:654, 1/f/754:755 | No text annotation Not in a motif group | ||
J3_7D6Z_017 | 1/f/826:829, 1/f/857:861, 1/f/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
J3_7D6Z_018 | 1/f/943:946, 1/f/1235:1237, 1/f/1337:1340 | No text annotation Not in a motif group | ||
J3_7D6Z_019 | 1/f/955:962, 1/f/973:984, 1/f/1221:1225 | No text annotation Not in a motif group | ||
J3_7D6Z_020 | 1/f/990:993, 1/f/1045:1047, 1/f/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
J3_7D6Z_021 | 1/f/1003:1006, 1/f/1023:1027, 1/f/1034:1037 | No text annotation Not in a motif group | ||
J3_7D6Z_022 | 1/f/1063:1068, 1/f/1107:1113, 1/f/1187:1193 | No text annotation Not in a motif group | ||
J3_7D6Z_023 | 1/f/1073:1074, 1/f/1083:1087, 1/f/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
J3_7D6Z_024 | 1/f/1116:1118, 1/f/1155:1158, 1/f/1181:1184 | No text annotation Not in a motif group | ||
J3_7D6Z_025 | 1/f/1237:1241, 1/f/1296:1303, 1/f/1334:1337 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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